AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046027.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046027.01.T01 MTR_4g097790 90.166 783 52 4 1 758 1 783 0.0 1149
MsG0880046027.01.T01 MTR_5g005430 44.156 77 31 3 1 68 1 74 2.50e-14 77.0
MsG0880046027.01.T01 MTR_1g105890 35.204 196 96 8 1 184 1 177 3.96e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046027.01.T01 AT4G33740 51.429 70 25 2 8 68 7 76 1.99e-17 86.3
MsG0880046027.01.T01 AT4G33740 51.429 70 25 2 8 68 7 76 1.99e-17 86.3
MsG0880046027.01.T01 AT4G33740 51.429 70 25 2 8 68 7 76 1.99e-17 86.3
MsG0880046027.01.T01 AT4G33740 51.429 70 25 2 8 68 7 76 1.99e-17 86.3
MsG0880046027.01.T01 AT4G33740 51.429 70 25 2 8 68 7 76 1.99e-17 86.3

Find 131 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTCTTTGAGTCATTC+TGG 0.163643 8:-67885031 None:intergenic
TTTCCTCCACATGAGGTTTA+AGG 0.231421 8:-67883273 None:intergenic
GTTTGGTTAGTTTATCAAAT+TGG 0.237146 8:+67883172 MsG0880046027.01.T01:CDS
GCATGACGAGCAAACAAAAT+TGG 0.258368 8:+67883357 MsG0880046027.01.T01:CDS
TAAAGAATCTCGTGTAGATT+TGG 0.278934 8:+67885274 MsG0880046027.01.T01:CDS
AGAGAATGAGGAAATTAAAA+AGG 0.285576 8:+67883552 MsG0880046027.01.T01:CDS
GAGGAGAATTAGGCATGTTT+AGG 0.292908 8:+67883065 None:intergenic
GGCAATGAAGTTGTTAAGTT+AGG 0.297885 8:+67883241 MsG0880046027.01.T01:CDS
CTCTCCTCCTTCTGTTCCAT+TGG 0.306465 8:-67884076 None:intergenic
AGAAGAACAATTTGACAAAA+AGG 0.307480 8:+67884254 MsG0880046027.01.T01:CDS
GATTTAGAATCTTCATTGTT+TGG 0.315496 8:-67884588 None:intergenic
CCTTCGCATCACTACCATTC+TGG 0.322961 8:-67884002 None:intergenic
CTCTACACTTTCCCTCTCCT+TGG 0.335719 8:-67883527 None:intergenic
ACAAAATTGGATGATGTTAA+TGG 0.336252 8:+67883370 MsG0880046027.01.T01:CDS
CTTAGATCTTTGACTCCTCC+TGG 0.358867 8:-67883095 None:intergenic
AGAAGGGCATGATAAGATTC+AGG 0.361284 8:+67884101 MsG0880046027.01.T01:CDS
TGAATCAGTGGAGTCGAAAA+AGG 0.361299 8:+67885163 MsG0880046027.01.T01:CDS
GAAAACCCGGAAAAGAATTC+TGG 0.364276 8:+67884711 MsG0880046027.01.T01:CDS
CCCGAGTTTGCATTGTCATT+CGG 0.373470 8:-67884888 None:intergenic
AATGAAGAGAACAAAGAAAC+TGG 0.374256 8:+67883628 MsG0880046027.01.T01:CDS
GAAGTAGAGGACACAGAAAC+TGG 0.375669 8:+67883574 MsG0880046027.01.T01:CDS
AAAGAATCTCGTGTAGATTT+GGG 0.384407 8:+67885275 MsG0880046027.01.T01:CDS
TTCTTGTTGGTGTTTGTGTT+TGG 0.390640 8:+67883155 MsG0880046027.01.T01:CDS
CTTGTTTACTATCTTGCTCA+TGG 0.391649 8:-67884041 None:intergenic
ACTTCCTTGATCATTCGAAT+TGG 0.392875 8:-67885225 None:intergenic
TTCATCTGATAATCAGGTTC+AGG 0.393266 8:+67884131 MsG0880046027.01.T01:CDS
CCTTCTCACTCTCACTTCCT+TGG 0.393945 8:-67884353 None:intergenic
TGGCTTTCTCCGTTGCTGTC+TGG 0.398238 8:-67885305 None:intergenic
CTACAAATATGTGTTCTTGT+TGG 0.398603 8:+67883142 MsG0880046027.01.T01:CDS
AGAGACTTCATCTGATAATC+AGG 0.414886 8:+67884125 MsG0880046027.01.T01:CDS
GTCATTAGCACTTTCATCAC+TGG 0.424247 8:-67884925 None:intergenic
ATCAGATGTTGCTGGAGATC+AGG 0.424407 8:+67884608 MsG0880046027.01.T01:CDS
AGAAGTGTTTCCGCTGTCAT+TGG 0.432416 8:-67885060 None:intergenic
GCTAGGGAGGAAAATTATTC+CGG 0.440944 8:+67884174 MsG0880046027.01.T01:CDS
AAGATCTAAGAACGGCTTCA+AGG 0.444974 8:+67883108 MsG0880046027.01.T01:CDS
TTCTGAGCATAAAGAGGATT+CGG 0.445078 8:+67883405 MsG0880046027.01.T01:CDS
GCAATGAAGTTGTTAAGTTA+GGG 0.446418 8:+67883242 MsG0880046027.01.T01:CDS
TCCTTGGCTGTTTCGTGTGA+CGG 0.462243 8:-67884337 None:intergenic
CCATTCTGCGATGATGTATC+CGG 0.462742 8:-67884483 None:intergenic
CAAGATGGCAATACAAATCA+TGG 0.470308 8:+67884666 MsG0880046027.01.T01:CDS
GAGAATGAAAAGATCAAAGA+TGG 0.475291 8:+67883835 MsG0880046027.01.T01:CDS
GATTCTAAATCAGATGTTGC+TGG 0.478943 8:+67884600 MsG0880046027.01.T01:CDS
CGGAGTTTGTACATCATCCT+TGG 0.484472 8:-67884463 None:intergenic
GAGAATGAAGAGAACAAAGA+TGG 0.485331 8:+67883718 MsG0880046027.01.T01:CDS
GAGAATGAAGAGAACAAAGA+TGG 0.485331 8:+67883757 MsG0880046027.01.T01:CDS
AAGTGAGAGTGAGAAGGATC+AGG 0.486082 8:+67884359 MsG0880046027.01.T01:CDS
ATCTTTGTTGTCAAATGTGT+TGG 0.490461 8:-67884766 None:intergenic
ACCGAATGACAATGCAAACT+CGG 0.494622 8:+67884887 MsG0880046027.01.T01:CDS
GACGAATCTGCTCACAAAGA+TGG 0.500432 8:+67885191 MsG0880046027.01.T01:CDS
TTAGATCTTTGACTCCTCCT+GGG 0.501240 8:-67883094 None:intergenic
CCGGATACATCATCGCAGAA+TGG 0.507562 8:+67884483 MsG0880046027.01.T01:CDS
CGGATACATCATCGCAGAAT+GGG 0.508789 8:+67884484 MsG0880046027.01.T01:CDS
AGCACTGGAGGCGTTATCTC+CGG 0.510765 8:-67884193 None:intergenic
AAGTGTAGAGAAAGAGAATG+AGG 0.515167 8:+67883540 MsG0880046027.01.T01:CDS
TGAGACAAAGAGTAACGATA+AGG 0.520367 8:+67883963 MsG0880046027.01.T01:CDS
AGATGCAAACTCAAAGAAAG+AGG 0.524658 8:+67884542 MsG0880046027.01.T01:CDS
AATTCCAATTCGAATGATCA+AGG 0.525233 8:+67885221 MsG0880046027.01.T01:CDS
TTCTGAGGAAGATGTAGTAG+TGG 0.531925 8:-67884640 None:intergenic
ACAGAAGGAGGAGAGAAAGA+AGG 0.532633 8:+67884084 MsG0880046027.01.T01:CDS
ATGAAGTTGTTAAGTTAGGG+AGG 0.537095 8:+67883245 MsG0880046027.01.T01:CDS
TTTGTTATCCACTACAGCAC+TGG 0.540846 8:-67884208 None:intergenic
AGTTGTTAAGTTAGGGAGGA+AGG 0.542263 8:+67883249 MsG0880046027.01.T01:CDS
TCAAAATGCTAAGACTGACT+TGG 0.542530 8:+67883453 MsG0880046027.01.T01:CDS
TAACGCCTCCAGTGCTGTAG+TGG 0.547992 8:+67884200 MsG0880046027.01.T01:CDS
CAGAAGGAGGAGAGAAAGAA+GGG 0.549074 8:+67884085 MsG0880046027.01.T01:CDS
CATGAGCAAGATAGTAAACA+AGG 0.550003 8:+67884042 MsG0880046027.01.T01:CDS
CAAGGGACGGCGGAGACCAA+TGG 0.550548 8:+67884060 MsG0880046027.01.T01:CDS
TCATCTGAAAACAGTGCAGA+GGG 0.551686 8:+67884975 MsG0880046027.01.T01:CDS
TGAGGAAGATGTAGTAGTGG+TGG 0.552598 8:-67884637 None:intergenic
GTGAAAAGAACAATGAGGCT+AGG 0.556837 8:+67884157 MsG0880046027.01.T01:CDS
GACAGAAAATGATTCACAGA+AGG 0.558166 8:+67884386 MsG0880046027.01.T01:CDS
GAAAAGAATTCTGGTCAAGA+AGG 0.566269 8:+67884720 MsG0880046027.01.T01:CDS
TACAAATCATGGTGAATACA+AGG 0.567359 8:+67884677 MsG0880046027.01.T01:CDS
GCATGTTTAGGTTATCTCCC+AGG 0.568543 8:+67883077 None:intergenic
GCGGAGACCAATGGAACAGA+AGG 0.571738 8:+67884069 MsG0880046027.01.T01:CDS
TTCTGATACATCAGTCACTC+AGG 0.572160 8:+67885247 MsG0880046027.01.T01:CDS
GCAAGAGAATGAAGAGAACA+AGG 0.572488 8:+67883792 MsG0880046027.01.T01:CDS
AGAATTACTTTCTGCACTCG+AGG 0.576669 8:-67884856 None:intergenic
CAGAAGAAACATCATTGTGA+TGG 0.579215 8:-67885325 None:intergenic
CCAGAATGGTAGTGATGCGA+AGG 0.580966 8:+67884002 MsG0880046027.01.T01:CDS
TGAAAAGAACAATGAGGCTA+GGG 0.583974 8:+67884158 MsG0880046027.01.T01:CDS
GAGACCAATGGAACAGAAGG+AGG 0.585754 8:+67884072 MsG0880046027.01.T01:CDS
TGACAACAAAGATTCTAGCC+AGG 0.586204 8:+67884944 MsG0880046027.01.T01:CDS
AGATAATTCTGAGCATAAAG+AGG 0.586342 8:+67883399 MsG0880046027.01.T01:CDS
ATTGCCATCTTGAGTTTCTG+AGG 0.586725 8:-67884655 None:intergenic
GTTCTGATTCTCATTCACAT+TGG 0.587926 8:-67885090 None:intergenic
GAATGACAATGCAGAGACCA+AGG 0.588611 8:+67883510 MsG0880046027.01.T01:CDS
ACAGAAGTTTCCTCCACATG+AGG 0.598636 8:-67883280 None:intergenic
TACTACCTCTGATACCTCAT+CGG 0.598827 8:+67884815 MsG0880046027.01.T01:CDS
ACCAAGACTAGTGAAAATGA+AGG 0.600742 8:+67885128 MsG0880046027.01.T01:CDS
CCAAGGAAGTGAGAGTGAGA+AGG 0.602518 8:+67884353 MsG0880046027.01.T01:CDS
AATGAAGAAAGCAACCAGAA+TGG 0.603174 8:+67883988 MsG0880046027.01.T01:CDS
CAAGGATGATGTACAAACTC+CGG 0.604858 8:+67884464 MsG0880046027.01.T01:CDS
GAAGGACCTTAAACCTCATG+TGG 0.607015 8:+67883267 MsG0880046027.01.T01:CDS
GGAACTTTGCCAGACAGCAA+CGG 0.607653 8:+67885296 MsG0880046027.01.T01:CDS
AATGCTAAGACTGACTTGGA+AGG 0.608284 8:+67883457 MsG0880046027.01.T01:CDS
TTGTTCCGATGAGGTATCAG+AGG 0.610717 8:-67884820 None:intergenic
ACAGAAAATGATTCACAGAA+GGG 0.613293 8:+67884387 MsG0880046027.01.T01:CDS
CAAGAAGGAACACAAGAAAG+TGG 0.614187 8:+67884735 MsG0880046027.01.T01:CDS
TCTTCCTCAGAAACTCAAGA+TGG 0.618250 8:+67884651 MsG0880046027.01.T01:CDS
CCGAATGACAATGCAAACTC+GGG 0.619630 8:+67884888 MsG0880046027.01.T01:CDS
GTTATCCACTACAGCACTGG+AGG 0.622028 8:-67884205 None:intergenic
TGATGCTCAAAATGAATCAG+TGG 0.624955 8:+67885151 MsG0880046027.01.T01:CDS
ACCGTCACACGAAACAGCCA+AGG 0.625338 8:+67884336 MsG0880046027.01.T01:CDS
ATTGGATGATGTTAATGGTG+TGG 0.625827 8:+67883375 MsG0880046027.01.T01:CDS
GCAAGATAGTAAACAAGGGA+CGG 0.627652 8:+67884047 MsG0880046027.01.T01:CDS
CAATGCAGAGACCAAGGAGA+GGG 0.630030 8:+67883516 MsG0880046027.01.T01:CDS
TTCATCTGAAAACAGTGCAG+AGG 0.631596 8:+67884974 MsG0880046027.01.T01:CDS
GGACACCACTAATGAAAACC+CGG 0.633456 8:+67884698 MsG0880046027.01.T01:CDS
AAAGAACAATGAGGCTAGGG+AGG 0.643597 8:+67884161 MsG0880046027.01.T01:CDS
AGAAACTGGAGAAAGTAATG+AGG 0.649473 8:+67883588 MsG0880046027.01.T01:CDS
TCTGATAATCAGGTTCAGGA+TGG 0.650784 8:+67884135 MsG0880046027.01.T01:CDS
TGTTATAGATGCAAGACACA+AGG 0.650888 8:+67883300 MsG0880046027.01.T01:CDS
TCGTGTGACGGTAGAAACAG+TGG 0.651794 8:-67884325 None:intergenic
TTTCAGATGAAGTAGTGACC+TGG 0.653028 8:-67884962 None:intergenic
TGCAAGACACAAGGAAGACG+AGG 0.658957 8:+67883309 MsG0880046027.01.T01:CDS
GGACCTTAAACCTCATGTGG+AGG 0.664100 8:+67883270 MsG0880046027.01.T01:CDS
AGGAGTCAAAGATCTAAGAA+CGG 0.671099 8:+67883100 MsG0880046027.01.T01:CDS
ACAATGCAGAGACCAAGGAG+AGG 0.673196 8:+67883515 MsG0880046027.01.T01:CDS
TAGTGATGCGAAGGATCAAG+CGG 0.673292 8:+67884011 MsG0880046027.01.T01:CDS
AGATAGTAAACAAGGGACGG+CGG 0.680895 8:+67884050 MsG0880046027.01.T01:CDS
AAGACACAAGGAAGACGAGG+AGG 0.683212 8:+67883312 MsG0880046027.01.T01:CDS
GGATGGTGAAAAGAACAATG+AGG 0.685838 8:+67884152 MsG0880046027.01.T01:CDS
TGATGCGAAGGATCAAGCGG+AGG 0.696334 8:+67884014 MsG0880046027.01.T01:CDS
AATGAAAATACCAATGACAG+CGG 0.700561 8:+67885050 MsG0880046027.01.T01:CDS
TGTTTAGGTTATCTCCCAGG+AGG 0.705901 8:+67883080 MsG0880046027.01.T01:CDS
AGAAACCGGAGAAATTACAG+AGG 0.706376 8:+67883909 MsG0880046027.01.T01:CDS
ATGAGCAAGATAGTAAACAA+GGG 0.719871 8:+67884043 MsG0880046027.01.T01:CDS
CAAAGATGCTACTAGCAACG+AGG 0.727750 8:+67884782 MsG0880046027.01.T01:CDS
AGAGCAGAATAACATCACCA+AGG 0.736602 8:+67884446 MsG0880046027.01.T01:CDS
AGAAACTGGAGAAAGTACCG+AGG 0.756900 8:+67883642 MsG0880046027.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATGAAGAGAAGAAAAATGA+AGG + Chr8:67883877-67883896 MsG0880046027.01.T01:CDS 25.0%
! ACAAAATTGGATGATGTTAA+TGG + Chr8:67883370-67883389 MsG0880046027.01.T01:CDS 25.0%
! AGAAGAACAATTTGACAAAA+AGG + Chr8:67884254-67884273 MsG0880046027.01.T01:CDS 25.0%
! AGAGAATGAGGAAATTAAAA+AGG + Chr8:67883552-67883571 MsG0880046027.01.T01:CDS 25.0%
! ATGAAGAGAAGAAAAATGAA+GGG + Chr8:67883878-67883897 MsG0880046027.01.T01:CDS 25.0%
!! GATTTAGAATCTTCATTGTT+TGG - Chr8:67884591-67884610 None:intergenic 25.0%
!!! GTTTGGTTAGTTTATCAAAT+TGG + Chr8:67883172-67883191 MsG0880046027.01.T01:CDS 25.0%
AAAGAATCTCGTGTAGATTT+GGG + Chr8:67885275-67885294 MsG0880046027.01.T01:CDS 30.0%
AATGAAAATACCAATGACAG+CGG + Chr8:67885050-67885069 MsG0880046027.01.T01:CDS 30.0%
AATGAAGAGAACAAAGAAAC+TGG + Chr8:67883628-67883647 MsG0880046027.01.T01:CDS 30.0%
AATTCCAATTCGAATGATCA+AGG + Chr8:67885221-67885240 MsG0880046027.01.T01:CDS 30.0%
ACAGAAAATGATTCACAGAA+GGG + Chr8:67884387-67884406 MsG0880046027.01.T01:CDS 30.0%
AGATAATTCTGAGCATAAAG+AGG + Chr8:67883399-67883418 MsG0880046027.01.T01:CDS 30.0%
ATGAGCAAGATAGTAAACAA+GGG + Chr8:67884043-67884062 MsG0880046027.01.T01:CDS 30.0%
CTACAAATATGTGTTCTTGT+TGG + Chr8:67883142-67883161 MsG0880046027.01.T01:CDS 30.0%
GAGAATGAAAAGATCAAAGA+TGG + Chr8:67883835-67883854 MsG0880046027.01.T01:CDS 30.0%
GCAATGAAGTTGTTAAGTTA+GGG + Chr8:67883242-67883261 MsG0880046027.01.T01:CDS 30.0%
GGAAATTAAAAAGGAAGTAG+AGG + Chr8:67883561-67883580 MsG0880046027.01.T01:CDS 30.0%
TAAAGAATCTCGTGTAGATT+TGG + Chr8:67885274-67885293 MsG0880046027.01.T01:CDS 30.0%
TACAAATCATGGTGAATACA+AGG + Chr8:67884677-67884696 MsG0880046027.01.T01:CDS 30.0%
TGAAGAGAAGAAAAATGAAG+GGG + Chr8:67883879-67883898 MsG0880046027.01.T01:CDS 30.0%
! ATCTTTGTTGTCAAATGTGT+TGG - Chr8:67884769-67884788 None:intergenic 30.0%
AAGTGTAGAGAAAGAGAATG+AGG + Chr8:67883540-67883559 MsG0880046027.01.T01:CDS 35.0%
AATGAAGAAAGCAACCAGAA+TGG + Chr8:67883988-67884007 MsG0880046027.01.T01:CDS 35.0%
ACCAAGACTAGTGAAAATGA+AGG + Chr8:67885128-67885147 MsG0880046027.01.T01:CDS 35.0%
ACTTCCTTGATCATTCGAAT+TGG - Chr8:67885228-67885247 None:intergenic 35.0%
AGAAACTGGAGAAAGTAATG+AGG + Chr8:67883588-67883607 MsG0880046027.01.T01:CDS 35.0%
AGAGACTTCATCTGATAATC+AGG + Chr8:67884125-67884144 MsG0880046027.01.T01:CDS 35.0%
AGATGCAAACTCAAAGAAAG+AGG + Chr8:67884542-67884561 MsG0880046027.01.T01:CDS 35.0%
AGGAGTCAAAGATCTAAGAA+CGG + Chr8:67883100-67883119 MsG0880046027.01.T01:CDS 35.0%
ATGAAGTTGTTAAGTTAGGG+AGG + Chr8:67883245-67883264 MsG0880046027.01.T01:CDS 35.0%
ATTGGATGATGTTAATGGTG+TGG + Chr8:67883375-67883394 MsG0880046027.01.T01:CDS 35.0%
CAAGATGGCAATACAAATCA+TGG + Chr8:67884666-67884685 MsG0880046027.01.T01:CDS 35.0%
CAGAAGAAACATCATTGTGA+TGG - Chr8:67885328-67885347 None:intergenic 35.0%
CATGAGCAAGATAGTAAACA+AGG + Chr8:67884042-67884061 MsG0880046027.01.T01:CDS 35.0%
CATTGTTCTTTGAGTCATTC+TGG - Chr8:67885034-67885053 None:intergenic 35.0%
CTTGTTTACTATCTTGCTCA+TGG - Chr8:67884044-67884063 None:intergenic 35.0%
GAAAAGAATTCTGGTCAAGA+AGG + Chr8:67884720-67884739 MsG0880046027.01.T01:CDS 35.0%
GAAGAGAAGAAAAATGAAGG+GGG + Chr8:67883880-67883899 MsG0880046027.01.T01:CDS 35.0%
GACAGAAAATGATTCACAGA+AGG + Chr8:67884386-67884405 MsG0880046027.01.T01:CDS 35.0%
GAGAATGAAGAGAACAAAGA+TGG + Chr8:67883679-67883698 MsG0880046027.01.T01:CDS 35.0%
GATTCTAAATCAGATGTTGC+TGG + Chr8:67884600-67884619 MsG0880046027.01.T01:CDS 35.0%
GGCAATGAAGTTGTTAAGTT+AGG + Chr8:67883241-67883260 MsG0880046027.01.T01:CDS 35.0%
GTTCTGATTCTCATTCACAT+TGG - Chr8:67885093-67885112 None:intergenic 35.0%
TCAAAATGCTAAGACTGACT+TGG + Chr8:67883453-67883472 MsG0880046027.01.T01:CDS 35.0%
TGAAAAGAACAATGAGGCTA+GGG + Chr8:67884158-67884177 MsG0880046027.01.T01:CDS 35.0%
TGAGACAAAGAGTAACGATA+AGG + Chr8:67883963-67883982 MsG0880046027.01.T01:CDS 35.0%
TGATGCTCAAAATGAATCAG+TGG + Chr8:67885151-67885170 MsG0880046027.01.T01:CDS 35.0%
TGTTATAGATGCAAGACACA+AGG + Chr8:67883300-67883319 MsG0880046027.01.T01:CDS 35.0%
TTCATCTGATAATCAGGTTC+AGG + Chr8:67884131-67884150 MsG0880046027.01.T01:CDS 35.0%
TTCTGAGCATAAAGAGGATT+CGG + Chr8:67883405-67883424 MsG0880046027.01.T01:CDS 35.0%
! ATCTTTCTTTTGTTCCGATG+AGG - Chr8:67884832-67884851 None:intergenic 35.0%
! CTTTTCCTCTGTAATTTCTC+CGG - Chr8:67883917-67883936 None:intergenic 35.0%
! TCTTGACCAGAATTCTTTTC+CGG - Chr8:67884720-67884739 None:intergenic 35.0%
! TTCTTGTTGGTGTTTGTGTT+TGG + Chr8:67883155-67883174 MsG0880046027.01.T01:CDS 35.0%
!! ACCTTCATTTTCACTAGTCT+TGG - Chr8:67885132-67885151 None:intergenic 35.0%
AAGATCTAAGAACGGCTTCA+AGG + Chr8:67883108-67883127 MsG0880046027.01.T01:CDS 40.0%
ACCGAATGACAATGCAAACT+CGG + Chr8:67884887-67884906 MsG0880046027.01.T01:CDS 40.0%
AGAAACCGGAGAAATTACAG+AGG + Chr8:67883909-67883928 MsG0880046027.01.T01:CDS 40.0%
AGAATTACTTTCTGCACTCG+AGG - Chr8:67884859-67884878 None:intergenic 40.0%
AGAGCAGAATAACATCACCA+AGG + Chr8:67884446-67884465 MsG0880046027.01.T01:CDS 40.0%
AGTTGTTAAGTTAGGGAGGA+AGG + Chr8:67883249-67883268 MsG0880046027.01.T01:CDS 40.0%
ATTGCCATCTTGAGTTTCTG+AGG - Chr8:67884658-67884677 None:intergenic 40.0%
CAAGAAGGAACACAAGAAAG+TGG + Chr8:67884735-67884754 MsG0880046027.01.T01:CDS 40.0%
CAAGGATGATGTACAAACTC+CGG + Chr8:67884464-67884483 MsG0880046027.01.T01:CDS 40.0%
GAAAACCCGGAAAAGAATTC+TGG + Chr8:67884711-67884730 MsG0880046027.01.T01:CDS 40.0%
GCAAGAGAATGAAGAGAACA+AGG + Chr8:67883714-67883733 MsG0880046027.01.T01:CDS 40.0%
GCAAGATAGTAAACAAGGGA+CGG + Chr8:67884047-67884066 MsG0880046027.01.T01:CDS 40.0%
GCATGACGAGCAAACAAAAT+TGG + Chr8:67883357-67883376 MsG0880046027.01.T01:CDS 40.0%
GCTAGGGAGGAAAATTATTC+CGG + Chr8:67884174-67884193 MsG0880046027.01.T01:CDS 40.0%
GGATGGTGAAAAGAACAATG+AGG + Chr8:67884152-67884171 MsG0880046027.01.T01:CDS 40.0%
GTCATTAGCACTTTCATCAC+TGG - Chr8:67884928-67884947 None:intergenic 40.0%
GTGAAAAGAACAATGAGGCT+AGG + Chr8:67884157-67884176 MsG0880046027.01.T01:CDS 40.0%
TACTACCTCTGATACCTCAT+CGG + Chr8:67884815-67884834 MsG0880046027.01.T01:CDS 40.0%
TCATCTGAAAACAGTGCAGA+GGG + Chr8:67884975-67884994 MsG0880046027.01.T01:CDS 40.0%
TCTGATAATCAGGTTCAGGA+TGG + Chr8:67884135-67884154 MsG0880046027.01.T01:CDS 40.0%
TCTTCCTCAGAAACTCAAGA+TGG + Chr8:67884651-67884670 MsG0880046027.01.T01:CDS 40.0%
TGAATCAGTGGAGTCGAAAA+AGG + Chr8:67885163-67885182 MsG0880046027.01.T01:CDS 40.0%
TGACAACAAAGATTCTAGCC+AGG + Chr8:67884944-67884963 MsG0880046027.01.T01:CDS 40.0%
TTAGATCTTTGACTCCTCCT+GGG - Chr8:67883097-67883116 None:intergenic 40.0%
TTCATCTGAAAACAGTGCAG+AGG + Chr8:67884974-67884993 MsG0880046027.01.T01:CDS 40.0%
TTCTGATACATCAGTCACTC+AGG + Chr8:67885247-67885266 MsG0880046027.01.T01:CDS 40.0%
TTTCAGATGAAGTAGTGACC+TGG - Chr8:67884965-67884984 None:intergenic 40.0%
TTTCCTCCACATGAGGTTTA+AGG - Chr8:67883276-67883295 None:intergenic 40.0%
! AGAAGGGCATGATAAGATTC+AGG + Chr8:67884101-67884120 MsG0880046027.01.T01:CDS 40.0%
! CTCTAGATGACTCTTTTCCT+CGG - Chr8:67883662-67883681 None:intergenic 40.0%
! CTTGACCAGAATTCTTTTCC+GGG - Chr8:67884719-67884738 None:intergenic 40.0%
! CTTTTCCGGGTTTTCATTAG+TGG - Chr8:67884706-67884725 None:intergenic 40.0%
! TTCTGAGGAAGATGTAGTAG+TGG - Chr8:67884643-67884662 None:intergenic 40.0%
! TTTGTTATCCACTACAGCAC+TGG - Chr8:67884211-67884230 None:intergenic 40.0%
!! AATGCTAAGACTGACTTGGA+AGG + Chr8:67883457-67883476 MsG0880046027.01.T01:CDS 40.0%
AAAGAACAATGAGGCTAGGG+AGG + Chr8:67884161-67884180 MsG0880046027.01.T01:CDS 45.0%
AAGTGAGAGTGAGAAGGATC+AGG + Chr8:67884359-67884378 MsG0880046027.01.T01:CDS 45.0%
ACAGAAGGAGGAGAGAAAGA+AGG + Chr8:67884084-67884103 MsG0880046027.01.T01:CDS 45.0%
ACAGAAGTTTCCTCCACATG+AGG - Chr8:67883283-67883302 None:intergenic 45.0%
AGATAGTAAACAAGGGACGG+CGG + Chr8:67884050-67884069 MsG0880046027.01.T01:CDS 45.0%
ATCAGATGTTGCTGGAGATC+AGG + Chr8:67884608-67884627 MsG0880046027.01.T01:CDS 45.0%
CAAAGATGCTACTAGCAACG+AGG + Chr8:67884782-67884801 MsG0880046027.01.T01:CDS 45.0%
CAGAAGGAGGAGAGAAAGAA+GGG + Chr8:67884085-67884104 MsG0880046027.01.T01:CDS 45.0%
CCATTCTGCGATGATGTATC+CGG - Chr8:67884486-67884505 None:intergenic 45.0%
CCCGAGTTTGCATTGTCATT+CGG - Chr8:67884891-67884910 None:intergenic 45.0%
CCGAATGACAATGCAAACTC+GGG + Chr8:67884888-67884907 MsG0880046027.01.T01:CDS 45.0%
CGGAGTTTGTACATCATCCT+TGG - Chr8:67884466-67884485 None:intergenic 45.0%
CGGATACATCATCGCAGAAT+GGG + Chr8:67884484-67884503 MsG0880046027.01.T01:CDS 45.0%
CTTAGATCTTTGACTCCTCC+TGG - Chr8:67883098-67883117 None:intergenic 45.0%
GAAGGACCTTAAACCTCATG+TGG + Chr8:67883267-67883286 MsG0880046027.01.T01:CDS 45.0%
GAAGTAGAGGACACAGAAAC+TGG + Chr8:67883574-67883593 MsG0880046027.01.T01:CDS 45.0%
GAATGACAATGCAGAGACCA+AGG + Chr8:67883510-67883529 MsG0880046027.01.T01:CDS 45.0%
GACGAATCTGCTCACAAAGA+TGG + Chr8:67885191-67885210 MsG0880046027.01.T01:CDS 45.0%
GGACACCACTAATGAAAACC+CGG + Chr8:67884698-67884717 MsG0880046027.01.T01:CDS 45.0%
TAGTGATGCGAAGGATCAAG+CGG + Chr8:67884011-67884030 MsG0880046027.01.T01:CDS 45.0%
TATGGAGCGAGCACAAAAAC+TGG + Chr8:67883220-67883239 MsG0880046027.01.T01:CDS 45.0%
TGAGGAAGATGTAGTAGTGG+TGG - Chr8:67884640-67884659 None:intergenic 45.0%
! TGTTTAGGTTATCTCCCAGG+AGG + Chr8:67883080-67883099 MsG0880046027.01.T01:CDS 45.0%
! TTGTTCCGATGAGGTATCAG+AGG - Chr8:67884823-67884842 None:intergenic 45.0%
!! AGAAACTGGAGAAAGTACCG+AGG + Chr8:67883642-67883661 MsG0880046027.01.T01:CDS 45.0%
!! AGAAGTGTTTCCGCTGTCAT+TGG - Chr8:67885063-67885082 None:intergenic 45.0%
AAGACACAAGGAAGACGAGG+AGG + Chr8:67883312-67883331 MsG0880046027.01.T01:CDS 50.0%
ACAATGCAGAGACCAAGGAG+AGG + Chr8:67883515-67883534 MsG0880046027.01.T01:CDS 50.0%
CAATGCAGAGACCAAGGAGA+GGG + Chr8:67883516-67883535 MsG0880046027.01.T01:CDS 50.0%
CCAAGGAAGTGAGAGTGAGA+AGG + Chr8:67884353-67884372 MsG0880046027.01.T01:CDS 50.0%
CCGGATACATCATCGCAGAA+TGG + Chr8:67884483-67884502 MsG0880046027.01.T01:CDS 50.0%
CCTTCGCATCACTACCATTC+TGG - Chr8:67884005-67884024 None:intergenic 50.0%
CCTTCTCACTCTCACTTCCT+TGG - Chr8:67884356-67884375 None:intergenic 50.0%
CTCTACACTTTCCCTCTCCT+TGG - Chr8:67883530-67883549 None:intergenic 50.0%
CTCTCCTCCTTCTGTTCCAT+TGG - Chr8:67884079-67884098 None:intergenic 50.0%
GAAGGGGGAGAGAAAGAAAC+CGG + Chr8:67883895-67883914 MsG0880046027.01.T01:CDS 50.0%
GAGACCAATGGAACAGAAGG+AGG + Chr8:67884072-67884091 MsG0880046027.01.T01:CDS 50.0%
GGAACTTTGCCAGACAGCAA+CGG + Chr8:67885296-67885315 MsG0880046027.01.T01:CDS 50.0%
GGACCTTAAACCTCATGTGG+AGG + Chr8:67883270-67883289 MsG0880046027.01.T01:CDS 50.0%
TCGTGTGACGGTAGAAACAG+TGG - Chr8:67884328-67884347 None:intergenic 50.0%
TGCAAGACACAAGGAAGACG+AGG + Chr8:67883309-67883328 MsG0880046027.01.T01:CDS 50.0%
! CCAGAATGGTAGTGATGCGA+AGG + Chr8:67884002-67884021 MsG0880046027.01.T01:CDS 50.0%
! GTTATCCACTACAGCACTGG+AGG - Chr8:67884208-67884227 None:intergenic 50.0%
! TCCTTGGCTGTTTCGTGTGA+CGG - Chr8:67884340-67884359 None:intergenic 50.0%
!! CGCGAGCAAAAAGCGTCTTA+TGG + Chr8:67883202-67883221 MsG0880046027.01.T01:CDS 50.0%
ACCGTCACACGAAACAGCCA+AGG + Chr8:67884336-67884355 MsG0880046027.01.T01:CDS 55.0%
GCGGAGACCAATGGAACAGA+AGG + Chr8:67884069-67884088 MsG0880046027.01.T01:CDS 55.0%
TAACGCCTCCAGTGCTGTAG+TGG + Chr8:67884200-67884219 MsG0880046027.01.T01:CDS 55.0%
TGATGCGAAGGATCAAGCGG+AGG + Chr8:67884014-67884033 MsG0880046027.01.T01:CDS 55.0%
TGGCTTTCTCCGTTGCTGTC+TGG - Chr8:67885308-67885327 None:intergenic 55.0%
!! AGCACTGGAGGCGTTATCTC+CGG - Chr8:67884196-67884215 None:intergenic 55.0%
CAAGGGACGGCGGAGACCAA+TGG + Chr8:67884060-67884079 MsG0880046027.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 67883079 67885355 67883079 ID=MsG0880046027.01;Name=MsG0880046027.01
Chr8 mRNA 67883079 67885355 67883079 ID=MsG0880046027.01.T01;Parent=MsG0880046027.01;Name=MsG0880046027.01.T01;_AED=0.20;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|758
Chr8 exon 67883079 67885355 67883079 ID=MsG0880046027.01.T01:exon:12778;Parent=MsG0880046027.01.T01
Chr8 CDS 67883079 67885355 67883079 ID=MsG0880046027.01.T01:cds;Parent=MsG0880046027.01.T01
Gene Sequence

>MsG0880046027.01.T01

ATGTTTAGGTTATCTCCCAGGAGGAGTCAAAGATCTAAGAACGGCTTCAAGGTGAAGCATGCTCTACAAATATGTGTTCTTGTTGGTGTTTGTGTTTGGTTAGTTTATCAAATTGGACATTCACGCGAGCAAAAAGCGTCTTATGGAGCGAGCACAAAAACTGGCAATGAAGTTGTTAAGTTAGGGAGGAAGGACCTTAAACCTCATGTGGAGGAAACTTCTGTTATAGATGCAAGACACAAGGAAGACGAGGAGGAAGCAGATGAACTAGACAATAAGCATGACGAGCAAACAAAATTGGATGATGTTAATGGTGTGGAAGATAATTCTGAGCATAAAGAGGATTCGGTAGAGCAAGAGAGTGAAGAGAGTTCTCAAAATGCTAAGACTGACTTGGAAGGTGAACAGCATACAGAGAAAGTTGATGAAGAGAATGACAATGCAGAGACCAAGGAGAGGGAAAGTGTAGAGAAAGAGAATGAGGAAATTAAAAAGGAAGTAGAGGACACAGAAACTGGAGAAAGTAATGAGGAAAAGAGTCATTTAGAAAATGAAGAGAACAAAGAAACTGGAGAAAGTACCGAGGAAAAGAGTCATCTAGAGAATGAAGAGAACAAAGATGAAGAAAAGAGTCAGCAAGAGAATGAAGAGAACAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAACAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAACAAGGATGAAGAAAAGAGTCAGCAAGAGAATGAAAAGATCAAAGATGGAGAAAAGATTCAGCAAGAGAATGAAGAGAAGAAAAATGAAGGGGGAGAGAAAGAAACCGGAGAAATTACAGAGGAAAAGAGTAAGCAAGAGAATGAAGAGACAAGTGAGACAAAGAGTAACGATAAGGAGAATGAAGAAAGCAACCAGAATGGTAGTGATGCGAAGGATCAAGCGGAGGAAAACCATGAGCAAGATAGTAAACAAGGGACGGCGGAGACCAATGGAACAGAAGGAGGAGAGAAAGAAGGGCATGATAAGATTCAGGAAGAGACTTCATCTGATAATCAGGTTCAGGATGGTGAAAAGAACAATGAGGCTAGGGAGGAAAATTATTCCGGAGATAACGCCTCCAGTGCTGTAGTGGATAACAAATCACAAGAAAGTTCTAACAAGACAGAAGAACAATTTGACAAAAAGGAAAAGAATGAGTTTGAGTCTCAGAAAAATAGTGATGAAACTACTGAATCCACTGTTTCTACCGTCACACGAAACAGCCAAGGAAGTGAGAGTGAGAAGGATCAGGCACAGACAGAAAATGATTCACAGAAGGGTTCTGCATCAGAGTCAGATGAACAGAAGCAAGAGCAAGAGCAGAATAACATCACCAAGGATGATGTACAAACTCCGGATACATCATCGCAGAATGGGAATGACACAGCTGAAAAACAGAATGAAAAATCTGAAGATGCAAACTCAAAGAAAGAGGACTCTAGCGCGCAAAATACAACGCCAAACAATGAAGATTCTAAATCAGATGTTGCTGGAGATCAGGCTGATTCCACCACTACTACATCTTCCTCAGAAACTCAAGATGGCAATACAAATCATGGTGAATACAAGGACACCACTAATGAAAACCCGGAAAAGAATTCTGGTCAAGAAGGAACACAAGAAAGTGGTTCATCATCCAACACATTTGACAACAAAGATGCTACTAGCAACGAGGTTAAACTAACTACTACCTCTGATACCTCATCGGAACAAAAGAAAGATGAATCCTCGAGTGCAGAAAGTAATTCTGAATCTTCACCGAATGACAATGCAAACTCGGGTCAAAGCAACACAACCAGTGATGAAAGTGCTAATGACAACAAAGATTCTAGCCAGGTCACTACTTCATCTGAAAACAGTGCAGAGGGAAACTCAAACACAGAAAACAACAGTGACGCAAACCAGAATGACTCAAAGAACAATGAAAATACCAATGACAGCGGAAACACTTCTAATGATGCCAATGTGAATGAGAATCAGAACGAGAACGCTGCTCAGACCAAGACTAGTGAAAATGAAGGTGATGCTCAAAATGAATCAGTGGAGTCGAAAAAGGAGAATGACGAATCTGCTCACAAAGATGGAGATAACAATTCCAATTCGAATGATCAAGGAAGTTCTGATACATCAGTCACTCAGGATGATAAAGAATCTCGTGTAGATTTGGGAACTTTGCCAGACAGCAACGGAGAAAGCCATCACAATGATGTTTCTTCTGCAGAATGA

Protein sequence

>MsG0880046027.01.T01

MFRLSPRRSQRSKNGFKVKHALQICVLVGVCVWLVYQIGHSREQKASYGASTKTGNEVVKLGRKDLKPHVEETSVIDARHKEDEEEADELDNKHDEQTKLDDVNGVEDNSEHKEDSVEQESEESSQNAKTDLEGEQHTEKVDEENDNAETKERESVEKENEEIKKEVEDTETGESNEEKSHLENEENKETGESTEEKSHLENEENKDEEKSQQENEENKDGEKIQQENEENKDGEKIQQENEENKDEEKSQQENEKIKDGEKIQQENEEKKNEGGEKETGEITEEKSKQENEETSETKSNDKENEESNQNGSDAKDQAEENHEQDSKQGTAETNGTEGGEKEGHDKIQEETSSDNQVQDGEKNNEAREENYSGDNASSAVVDNKSQESSNKTEEQFDKKEKNEFESQKNSDETTESTVSTVTRNSQGSESEKDQAQTENDSQKGSASESDEQKQEQEQNNITKDDVQTPDTSSQNGNDTAEKQNEKSEDANSKKEDSSAQNTTPNNEDSKSDVAGDQADSTTTTSSSETQDGNTNHGEYKDTTNENPEKNSGQEGTQESGSSSNTFDNKDATSNEVKLTTTSDTSSEQKKDESSSAESNSESSPNDNANSGQSNTTSDESANDNKDSSQVTTSSENSAEGNSNTENNSDANQNDSKNNENTNDSGNTSNDANVNENQNENAAQTKTSENEGDAQNESVESKKENDESAHKDGDNNSNSNDQGSSDTSVTQDDKESRVDLGTLPDSNGESHHNDVSSAE*