AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030633.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030633.01.T01 MTR_6g008170 64.583 240 15 3 2 171 282 521 1.32e-85 265
MsG0680030633.01.T01 MTR_3g078340 73.950 119 31 0 3 121 256 374 1.03e-49 171
MsG0680030633.01.T01 MTR_4g063800 39.048 105 64 0 17 121 412 516 2.30e-17 81.6
MsG0680030633.01.T01 MTR_4g485520 34.454 119 78 0 3 121 418 536 2.49e-17 81.3
MsG0680030633.01.T01 MTR_4g485520 34.167 120 79 0 2 121 249 368 2.81e-17 80.9
MsG0680030633.01.T01 MTR_3g466220 36.207 116 74 0 6 121 580 695 3.69e-17 80.9
MsG0680030633.01.T01 MTR_3g466220 36.207 116 74 0 6 121 601 716 4.36e-17 80.9
MsG0680030633.01.T01 MTR_7g078330 34.259 108 71 0 14 121 423 530 5.12e-15 74.7
MsG0680030633.01.T01 MTR_7g097020 32.759 116 78 0 6 121 530 645 2.79e-14 72.4
MsG0680030633.01.T01 MTR_1g069845 33.884 121 80 0 1 121 366 486 1.09e-13 70.5
MsG0680030633.01.T01 MTR_1g069845 33.884 121 80 0 1 121 487 607 2.55e-13 69.7
MsG0680030633.01.T01 MTR_1g069845 33.884 121 80 0 1 121 483 603 2.87e-13 69.3
MsG0680030633.01.T01 MTR_5g083030 34.426 122 78 2 2 121 449 570 1.02e-12 67.8
MsG0680030633.01.T01 MTR_1g094215 35.000 120 78 0 2 121 206 325 1.17e-12 67.4
MsG0680030633.01.T01 MTR_1g094215 35.000 120 78 0 2 121 389 508 1.45e-12 67.4
MsG0680030633.01.T01 MTR_1g018180 33.621 116 77 0 6 121 109 224 9.32e-12 64.3
MsG0680030633.01.T01 MTR_1g018180 32.061 131 79 1 31 151 93 223 1.80e-11 63.5
MsG0680030633.01.T01 MTR_7g059405 30.833 120 83 0 2 121 405 524 2.85e-11 63.5
MsG0680030633.01.T01 MTR_3g103050 33.010 103 69 0 19 121 116 218 3.98e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030633.01.T01 AT5G40140 68.908 119 37 0 3 121 275 393 4.99e-45 159
MsG0680030633.01.T01 AT5G62560 63.636 121 43 1 2 121 280 400 6.43e-42 150
MsG0680030633.01.T01 AT5G65200 60.000 130 51 1 2 130 270 399 2.12e-41 149
MsG0680030633.01.T01 AT3G47820 61.983 121 45 1 2 121 251 371 2.21e-40 146
MsG0680030633.01.T01 AT2G28830 36.885 122 76 1 1 121 329 450 1.23e-17 82.4
MsG0680030633.01.T01 AT3G46510 33.621 116 77 0 6 121 402 517 2.80e-17 81.3
MsG0680030633.01.T01 AT2G23140 34.646 127 81 1 1 127 397 521 4.27e-17 80.9
MsG0680030633.01.T01 AT2G23140 34.646 127 81 1 1 127 397 521 4.27e-17 80.9
MsG0680030633.01.T01 AT2G23140 34.646 127 81 1 1 127 589 713 5.87e-17 80.5
MsG0680030633.01.T01 AT2G23140 34.043 94 59 1 31 124 578 668 9.02e-11 62.0
MsG0680030633.01.T01 AT2G23140 34.646 127 81 1 1 127 586 710 6.04e-17 80.5
MsG0680030633.01.T01 AT2G23140 34.043 94 59 1 31 124 575 665 9.80e-11 62.0
MsG0680030633.01.T01 AT2G23140 34.646 127 81 1 1 127 586 710 6.04e-17 80.5
MsG0680030633.01.T01 AT2G23140 34.043 94 59 1 31 124 575 665 9.80e-11 62.0
MsG0680030633.01.T01 AT5G42340 35.185 108 70 0 14 121 437 544 1.61e-15 76.3
MsG0680030633.01.T01 AT1G71020 32.237 152 88 2 17 167 403 540 5.77e-15 74.3
MsG0680030633.01.T01 AT1G71020 32.237 152 88 2 17 167 255 392 6.78e-15 73.9
MsG0680030633.01.T01 AT1G23030 33.621 116 77 0 6 121 381 496 1.80e-14 73.2
MsG0680030633.01.T01 AT5G67340 33.140 172 102 5 6 176 471 630 4.35e-14 72.0
MsG0680030633.01.T01 AT5G67340 33.140 172 102 5 6 176 471 630 4.35e-14 72.0
MsG0680030633.01.T01 AT3G01400 31.897 116 79 0 6 121 113 228 1.91e-11 63.5
MsG0680030633.01.T01 AT5G58680 33.613 119 79 0 3 121 108 226 2.15e-11 63.5
MsG0680030633.01.T01 AT3G54850 33.333 120 80 0 2 121 391 510 7.33e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGCGGGTTGAGGTTTA+AGG 0.264879 6:-6425818 MsG0680030633.01.T01:CDS
GGTCAATGCACTTGCTTCAT+TGG 0.314231 6:-6426344 MsG0680030633.01.T01:CDS
ACCCGTTGGGGATGGGGATG+GGG 0.319029 6:-6424874 MsG0680030633.01.T01:CDS
GACCCGTTGGGGATGGGGAT+GGG 0.327628 6:-6424875 MsG0680030633.01.T01:CDS
AGACTTGATGCAACATGCTT+TGG 0.329660 6:-6421556 MsG0680030633.01.T01:CDS
TGAAAAGGTGAGGAGGATAT+TGG 0.347944 6:-6425725 MsG0680030633.01.T01:CDS
TTTCTCATCCCCGTTGGGTA+TGG 0.348326 6:-6424846 MsG0680030633.01.T01:CDS
TGTCTTTAGTGAGGAGTAAT+CGG 0.350050 6:-6426069 MsG0680030633.01.T01:CDS
TTGGGTATGGGTAGGGTAAC+AGG 0.368789 6:-6424833 MsG0680030633.01.T01:intron
TACCCGACCCGTTGGGGATG+GGG 0.378615 6:-6424880 MsG0680030633.01.T01:CDS
TTCAATTTCTCATCCCCGTT+GGG 0.387095 6:-6424851 MsG0680030633.01.T01:CDS
ATGCGGGGACAGGGATGAGG+CGG 0.391719 6:-6424906 MsG0680030633.01.T01:intron
GCGGGGATACCCGACCCGTT+GGG 0.404794 6:-6424887 MsG0680030633.01.T01:CDS
GATGCAACATGCTTTGGAAT+TGG 0.407800 6:-6421550 MsG0680030633.01.T01:CDS
ATCCCCATCCCCAACGGGTC+GGG 0.417012 6:+6424878 None:intergenic
ATACCCGACCCGTTGGGGAT+GGG 0.417144 6:-6424881 MsG0680030633.01.T01:CDS
GACGCGCCATGACTCGGGTT+TGG 0.418859 6:-6426104 MsG0680030633.01.T01:CDS
CGACCCGTTGGGGATGGGGA+TGG 0.421258 6:-6424876 MsG0680030633.01.T01:CDS
TTACCCTACCCATACCCAAC+GGG 0.435226 6:+6424837 None:intergenic
TTCGTGTGCGATGTTTAGTT+TGG 0.443972 6:-6426212 MsG0680030633.01.T01:CDS
GATACCCGACCCGTTGGGGA+TGG 0.446864 6:-6424882 MsG0680030633.01.T01:CDS
CATTGAGTCATGGCGGGTTG+AGG 0.451605 6:-6425825 MsG0680030633.01.T01:intron
TTCTCATCCCCGTTGGGTAT+GGG 0.462345 6:-6424845 MsG0680030633.01.T01:CDS
CGGGTTGAGGTTTAAGGCGG+TGG 0.465510 6:-6425812 MsG0680030633.01.T01:CDS
TGCGGGGACAGGGATGAGGC+GGG 0.468756 6:-6424905 MsG0680030633.01.T01:intron
GTCTTTAGTGAGGAGTAATC+GGG 0.470251 6:-6426068 MsG0680030633.01.T01:CDS
ACCCCATCCCCATCCCCAAC+GGG 0.477137 6:+6424873 None:intergenic
GCGGGGACAGGGATGAGGCG+GGG 0.479666 6:-6424904 MsG0680030633.01.T01:intron
TGTGGAAATGTTGCAAAAGA+TGG 0.488035 6:-6425773 MsG0680030633.01.T01:CDS
GAGGTTTAAGGCGGTGGCGA+AGG 0.489134 6:-6425806 MsG0680030633.01.T01:CDS
TCAACAAAGTGAAGATAGTT+CGG 0.491459 6:-6426300 MsG0680030633.01.T01:CDS
GTTCAATTTCTCATCCCCGT+TGG 0.496539 6:-6424852 MsG0680030633.01.T01:CDS
GAGGAGTAATCGGGCTAAGA+TGG 0.497030 6:-6426059 MsG0680030633.01.T01:CDS
GATTTAAGCGCGTGAAGTAA+AGG 0.502148 6:+6426139 None:intergenic
GGCGAAGGAGGTTGGAGTTG+TGG 0.503945 6:-6425791 MsG0680030633.01.T01:CDS
CGGGCTAAGATGGTTAAGCT+AGG 0.507277 6:-6426049 MsG0680030633.01.T01:CDS
GTTTGGATCGTGTGAATCGC+AGG 0.509854 6:-6426242 MsG0680030633.01.T01:CDS
TCAATGCGGGGACAGGGATG+AGG 0.518731 6:-6424909 MsG0680030633.01.T01:intron
CATCCCCGTTGGGTATGGGT+AGG 0.518749 6:-6424841 MsG0680030633.01.T01:CDS
TAGAAATGAAGCTGCAGGAA+AGG 0.520060 6:-6421476 MsG0680030633.01.T01:CDS
TGAAAAGACGCGCCATGACT+CGG 0.520929 6:-6426110 MsG0680030633.01.T01:CDS
TTTGTCATTTGTCTTTAGTG+AGG 0.521733 6:-6426078 MsG0680030633.01.T01:CDS
TGTTGACTTTCTCAAGTGAA+AGG 0.524318 6:+6426317 None:intergenic
AAGGCGGTGGCGAAGGAGGT+TGG 0.532422 6:-6425799 MsG0680030633.01.T01:CDS
GGCGGGGATACCCGACCCGT+TGG 0.535890 6:-6424888 MsG0680030633.01.T01:CDS
GAGCGAGAAGGCTAATGAAA+AGG 0.536039 6:-6425740 MsG0680030633.01.T01:CDS
TGAAGCTGCAGGAAAGGAAG+AGG 0.544369 6:-6421470 MsG0680030633.01.T01:CDS
GAAAAGACGCGCCATGACTC+GGG 0.545042 6:-6426109 MsG0680030633.01.T01:CDS
ATCCCCGTTGGGTATGGGTA+GGG 0.549063 6:-6424840 MsG0680030633.01.T01:CDS
GGAAGTAGAAATGAAGCTGC+AGG 0.553371 6:-6421481 MsG0680030633.01.T01:CDS
AAAGTGAAGATAGTTCGGTC+AGG 0.554562 6:-6426295 MsG0680030633.01.T01:CDS
CATCCCCATCCCCAACGGGT+CGG 0.563413 6:+6424877 None:intergenic
CGGGGATACCCGACCCGTTG+GGG 0.564955 6:-6424886 MsG0680030633.01.T01:CDS
AACCCCATCCCCATCCCCAA+CGG 0.565963 6:+6424872 None:intergenic
GATGATAATAAAACTGCGAT+TGG 0.572462 6:-6426181 MsG0680030633.01.T01:CDS
AAAGGTGAGGAGGATATTGG+AGG 0.573257 6:-6425722 MsG0680030633.01.T01:CDS
GTTTAAGGCGGTGGCGAAGG+AGG 0.574627 6:-6425803 MsG0680030633.01.T01:CDS
AGGCTAATGAAAAGGTGAGG+AGG 0.581449 6:-6425732 MsG0680030633.01.T01:CDS
GGGCTAAGATGGTTAAGCTA+GGG 0.583294 6:-6426048 MsG0680030633.01.T01:intron
AACCTCAAAACTTCGATCAA+CGG 0.584438 6:+6426262 None:intergenic
AAAGAGCCAAACCCGAGTCA+TGG 0.590714 6:+6426098 None:intergenic
TGTATGCATTGAGTCATGGC+GGG 0.611163 6:-6425831 MsG0680030633.01.T01:intron
TCACAAGAAAATGCATGACC+TGG 0.631525 6:-6421584 MsG0680030633.01.T01:CDS
TTGTATGCATTGAGTCATGG+CGG 0.636106 6:-6425832 MsG0680030633.01.T01:intron
TTGGAGATAGAACAACTGAA+AGG 0.640624 6:-6421531 MsG0680030633.01.T01:CDS
CTCAAAACTTCGATCAACGG+TGG 0.646331 6:+6426265 None:intergenic
GTTACCCTACCCATACCCAA+CGG 0.649389 6:+6424836 None:intergenic
GGAGAAAATGAAGAGCGAGA+AGG 0.651983 6:-6425752 MsG0680030633.01.T01:CDS
TGGCGGGTTGAGGTTTAAGG+CGG 0.677131 6:-6425815 MsG0680030633.01.T01:CDS
AGAAGGCTAATGAAAAGGTG+AGG 0.679571 6:-6425735 MsG0680030633.01.T01:CDS
TACCCTACCCATACCCAACG+GGG 0.703194 6:+6424838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGTTAGATATATAAAA+GGG + Chr6:6424485-6424504 None:intergenic 10.0%
!! TAAAATGTTAGATATATAAA+AGG + Chr6:6424486-6424505 None:intergenic 10.0%
!! TACAAAAAAAAAAAAAAAGT+GGG - Chr6:6425817-6425836 MsG0680030633.01.T01:CDS 10.0%
!! TCTTATGATAAAAAAATTTA+AGG + Chr6:6425023-6425042 None:intergenic 10.0%
!! TTAAAAAATATTATTCAATG+CGG - Chr6:6422921-6422940 MsG0680030633.01.T01:intron 10.0%
!! TTACAAAAAAAAAAAAAAAG+TGG - Chr6:6425816-6425835 MsG0680030633.01.T01:CDS 10.0%
!!! AAAAAAAATTTATTTTAGAG+AGG + Chr6:6425375-6425394 None:intergenic 10.0%
!!! AATTAAAAAATGTTGATAAA+AGG + Chr6:6426172-6426191 None:intergenic 10.0%
!!! ATGATTAATATTAATTTTTG+TGG - Chr6:6425725-6425744 MsG0680030633.01.T01:CDS 10.0%
!!! GGTTAATTAAATAATTTTTT+TGG + Chr6:6425406-6425425 None:intergenic 10.0%
!!! TGATTAATATTAATTTTTGT+GGG - Chr6:6425726-6425745 MsG0680030633.01.T01:CDS 10.0%
!!! TTAATAAAGTTGAATTTTTT+TGG - Chr6:6423176-6423195 MsG0680030633.01.T01:intron 10.0%
!!! TTTGATTTTAAAAAATGAAA+TGG - Chr6:6425254-6425273 MsG0680030633.01.T01:intron 10.0%
!!! TTTTGATTTTAAAAATGAAA+TGG + Chr6:6425702-6425721 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAGTGG+GGG + Chr6:6425135-6425154 None:intergenic 15.0%
!! AAAAATGAAAGTTACTAATA+TGG + Chr6:6423970-6423989 None:intergenic 15.0%
!! AAATGAATTCTTAGTTAAAT+AGG - Chr6:6422527-6422546 MsG0680030633.01.T01:intron 15.0%
!! AAATGTTAGATATATAAAAG+GGG + Chr6:6424484-6424503 None:intergenic 15.0%
!! ACAAAAAAAAAAAAAAAGTG+GGG - Chr6:6425818-6425837 MsG0680030633.01.T01:CDS 15.0%
!! AGAAAGAAAAAAAATATGAT+AGG + Chr6:6423861-6423880 None:intergenic 15.0%
!! ATTTCATATAATTCAGTTAA+AGG + Chr6:6423906-6423925 None:intergenic 15.0%
!! CAAAAAAAAAAAAAAAAGTG+GGG + Chr6:6425136-6425155 None:intergenic 15.0%
!! CTTAAAAAATAAGAAAACAA+TGG + Chr6:6422420-6422439 None:intergenic 15.0%
!! GAGATTAAATATTTCTTATT+TGG + Chr6:6424971-6424990 None:intergenic 15.0%
!! GCAAAAAAAAAAAAAAAAGT+GGG + Chr6:6425137-6425156 None:intergenic 15.0%
!! TAAAAAATATTATTCAATGC+GGG - Chr6:6422922-6422941 MsG0680030633.01.T01:intron 15.0%
!! TAACATATAATCATATTTAC+TGG - Chr6:6424073-6424092 MsG0680030633.01.T01:intron 15.0%
!! TGCAAAAAAAAAAAAAAAAG+TGG + Chr6:6425138-6425157 None:intergenic 15.0%
!!! TCTTTTAATTAACATGAATT+AGG + Chr6:6424794-6424813 None:intergenic 15.0%
!!! TGTTTTCTTATTTTTTAAGT+TGG - Chr6:6422421-6422440 MsG0680030633.01.T01:intron 15.0%
!!! TTTTATTTTGTTTGTGTATA+GGG - Chr6:6422494-6422513 MsG0680030633.01.T01:intron 15.0%
!!! TTTTTATTTTGTTTGTGTAT+AGG - Chr6:6422493-6422512 MsG0680030633.01.T01:intron 15.0%
!! AAAAAATATTATTCAATGCG+GGG - Chr6:6422923-6422942 MsG0680030633.01.T01:intron 20.0%
!! AATGTTAGATATATAAAAGG+GGG + Chr6:6424483-6424502 None:intergenic 20.0%
!! AATTATCAAACAGAATAACA+TGG + Chr6:6422764-6422783 None:intergenic 20.0%
!! AGATTATTAAATGATGCAAA+AGG - Chr6:6426091-6426110 MsG0680030633.01.T01:CDS 20.0%
!! AGCAAATATTACATAATTCT+AGG + Chr6:6423685-6423704 None:intergenic 20.0%
!! ATAAATAATAACAATCCAGA+TGG - Chr6:6425487-6425506 MsG0680030633.01.T01:intron 20.0%
!! ATGGAATTGAAATTAAACTT+AGG + Chr6:6425683-6425702 None:intergenic 20.0%
!! ATTGAAATTAAACTTAGGAA+AGG - Chr6:6425279-6425298 MsG0680030633.01.T01:intron 20.0%
!! ATTGAAATTAAACTTAGGAA+AGG + Chr6:6425298-6425279 None:intergenic 20.0%
!! CAAAAAAAAAAAAAAAGTGG+GGG - Chr6:6425819-6425838 MsG0680030633.01.T01:CDS 20.0%
!! CAAAAGAATTGAAAAAGAAA+AGG + Chr6:6423307-6423326 None:intergenic 20.0%
!! CAATTGCTAAAACATTATAA+TGG + Chr6:6425583-6425602 None:intergenic 20.0%
!! CTATAACGTTTATTAATTGA+AGG + Chr6:6423258-6423277 None:intergenic 20.0%
!! TAAAATTATCAAACTGTTGT+CGG + Chr6:6425340-6425359 None:intergenic 20.0%
!! TAGACAAAAAAAATTGGAAT+CGG - Chr6:6424824-6424843 MsG0680030633.01.T01:intron 20.0%
!! TCATGTTAATTAAAAGATTG+AGG - Chr6:6424797-6424816 MsG0680030633.01.T01:intron 20.0%
!! TCTTAAACAAATATGAATGT+TGG + Chr6:6424712-6424731 None:intergenic 20.0%
!! TGGAAATTGAAATTAAACTT+AGG - Chr6:6425274-6425293 MsG0680030633.01.T01:intron 20.0%
!! TTGAAATTAAACTTAGGAAA+GGG - Chr6:6425280-6425299 MsG0680030633.01.T01:intron 20.0%
!! TTGAAATTAAACTTAGGAAA+GGG + Chr6:6425299-6425280 None:intergenic 20.0%
!!! AATAAAATTGAAGCTTTGTT+TGG + Chr6:6425908-6425927 None:intergenic 20.0%
!!! ATAAAATAGTTTTCTGCATT+TGG + Chr6:6422732-6422751 None:intergenic 20.0%
!!! ATAAAATTGAAGCTTTGTTT+GGG + Chr6:6425907-6425926 None:intergenic 20.0%
!!! TACTTCGAACTATTATTTTT+AGG - Chr6:6424854-6424873 MsG0680030633.01.T01:CDS 20.0%
!!! TTCCAATTTTTTTTGTCTAT+AGG + Chr6:6424823-6424842 None:intergenic 20.0%
!!! TTCTTATTTTTTAAGTTGGA+TGG - Chr6:6422425-6422444 MsG0680030633.01.T01:intron 20.0%
! AAAATCAAATGTGTGTCTTA+TGG + Chr6:6426149-6426168 None:intergenic 25.0%
! AAAATTATCAAACTGTTGTC+GGG + Chr6:6425339-6425358 None:intergenic 25.0%
! AAGAAAAGGTAGAGATAAAA+AGG + Chr6:6423293-6423312 None:intergenic 25.0%
! AAGCTACCATTGATATTTAA+AGG - Chr6:6422796-6422815 MsG0680030633.01.T01:intron 25.0%
! AATGTATATTCGCATACAAT+AGG - Chr6:6424050-6424069 MsG0680030633.01.T01:intron 25.0%
! AATGTTGTTGAAGTTTACTT+GGG - Chr6:6422347-6422366 MsG0680030633.01.T01:intron 25.0%
! ACTGGAAGAATAAATTAGTA+GGG - Chr6:6424091-6424110 MsG0680030633.01.T01:intron 25.0%
! ATCATCACAAGATCAAATAT+TGG + Chr6:6423656-6423675 None:intergenic 25.0%
! ATTACAAGTTATGAAGAACA+AGG - Chr6:6423930-6423949 MsG0680030633.01.T01:intron 25.0%
! CAATTAATAAACGTTATAGC+TGG - Chr6:6423259-6423278 MsG0680030633.01.T01:intron 25.0%
! GATGAAAAAAATGATGCATT+TGG - Chr6:6426116-6426135 MsG0680030633.01.T01:CDS 25.0%
! GTAAATCGATTAAAAACCAT+TGG + Chr6:6425800-6425819 None:intergenic 25.0%
! GTTACTAATATGGTGAATAT+CGG + Chr6:6423960-6423979 None:intergenic 25.0%
! TACTGGAAGAATAAATTAGT+AGG - Chr6:6424090-6424109 MsG0680030633.01.T01:intron 25.0%
! TATTGATGAAAGACATTGAA+CGG + Chr6:6425774-6425793 None:intergenic 25.0%
! TGCATTACAATATTTCACTA+CGG - Chr6:6422873-6422892 MsG0680030633.01.T01:intron 25.0%
! TGTTAAAGTGAACATATTGT+TGG - Chr6:6422846-6422865 MsG0680030633.01.T01:intron 25.0%
! TTACAAGTTATGAAGAACAA+GGG - Chr6:6423931-6423950 MsG0680030633.01.T01:intron 25.0%
! TTGTTAATGTTGGGTATTTA+GGG - Chr6:6421873-6421892 MsG0680030633.01.T01:intron 25.0%
! TTTGATTGTGTCTAAAAATG+AGG - Chr6:6421470-6421489 MsG0680030633.01.T01:CDS 25.0%
! TTTGTTAATGTTGGGTATTT+AGG - Chr6:6421872-6421891 MsG0680030633.01.T01:intron 25.0%
!! GAAAAAAAATGTAGTGGAAA+AGG + Chr6:6423719-6423738 None:intergenic 25.0%
!!! AAAATTTTAAAAACCCAGCA+CGG + Chr6:6425636-6425655 None:intergenic 25.0%
!!! AAGAAGTATTTTGAAGGTTT+TGG - Chr6:6424165-6424184 MsG0680030633.01.T01:intron 25.0%
!!! AATGAAACTTGTTGTATGAA+TGG - Chr6:6423587-6423606 MsG0680030633.01.T01:intron 25.0%
!!! GATCAAGTTTTGTTAATGTT+GGG - Chr6:6421864-6421883 MsG0680030633.01.T01:intron 25.0%
!!! TAATTTCTTTTTTGTCCATC+TGG + Chr6:6425505-6425524 None:intergenic 25.0%
!!! TCATTTGAACAAGTTTTGTT+TGG + Chr6:6423543-6423562 None:intergenic 25.0%
!!! TTATATGGACTAGCATTATA+AGG + Chr6:6425427-6425446 None:intergenic 25.0%
!!! TTCGAACTATTATTTTTAGG+AGG - Chr6:6424857-6424876 MsG0680030633.01.T01:CDS 25.0%
AAAGGAGCAACTAAATCATT+CGG - Chr6:6422814-6422833 MsG0680030633.01.T01:intron 30.0%
AAATGATCATATGCTGTCTA+CGG - Chr6:6425074-6425093 MsG0680030633.01.T01:intron 30.0%
AAGAGTCATCAAAACATAAG+TGG + Chr6:6426208-6426227 None:intergenic 30.0%
AAGTTTACTTGGGTAGAAAT+TGG - Chr6:6422357-6422376 MsG0680030633.01.T01:intron 30.0%
ACAAAAAAAATTGGAATCGG+AGG - Chr6:6424827-6424846 MsG0680030633.01.T01:intron 30.0%
ACAGGTAAGTATATGAGAAT+CGG - Chr6:6423029-6423048 MsG0680030633.01.T01:intron 30.0%
ACTAATTCCAACTAGATTAG+TGG - Chr6:6423388-6423407 MsG0680030633.01.T01:intron 30.0%
AGACAACACATTAACAAGTA+AGG - Chr6:6424754-6424773 MsG0680030633.01.T01:intron 30.0%
ATCACAAGATCAAATATTGG+TGG + Chr6:6423653-6423672 None:intergenic 30.0%
ATTCAGTTAAAGGTGATGAT+AGG + Chr6:6423896-6423915 None:intergenic 30.0%
ATTGAACGGTTGTAATGTAT+AGG - Chr6:6425194-6425213 MsG0680030633.01.T01:intron 30.0%
CAATGTTGTTGAAGTTTACT+TGG - Chr6:6422346-6422365 MsG0680030633.01.T01:intron 30.0%
CATAAATAATGCTCTTCTCA+TGG + Chr6:6423624-6423643 None:intergenic 30.0%
CATAACTTTGTATCAACCAA+TGG - Chr6:6423763-6423782 MsG0680030633.01.T01:intron 30.0%
CATTAACAAGTAAGGAGATT+TGG - Chr6:6424762-6424781 MsG0680030633.01.T01:intron 30.0%
CTCATACATCTATCACATTA+AGG + Chr6:6424458-6424477 None:intergenic 30.0%
CTTAGTTAAATAGGTGTGTA+TGG - Chr6:6422536-6422555 MsG0680030633.01.T01:intron 30.0%
GATGATAATAAAACTGCGAT+TGG - Chr6:6421663-6421682 MsG0680030633.01.T01:intron 30.0%
GATGTGGAAAAAAAATGTAG+TGG + Chr6:6423725-6423744 None:intergenic 30.0%
GCAAATCGATTAAAAACCAT+TGG - Chr6:6425155-6425174 MsG0680030633.01.T01:intron 30.0%
GGCCTATAGACAAAAAAAAT+TGG - Chr6:6424818-6424837 MsG0680030633.01.T01:intron 30.0%
GTAAGCTACAACAATGTATT+GGG + Chr6:6425948-6425967 None:intergenic 30.0%
GTTGCTCCTTTAAATATCAA+TGG + Chr6:6422805-6422824 None:intergenic 30.0%
GTTGTAATGTATAGGGAATA+TGG - Chr6:6425202-6425221 MsG0680030633.01.T01:intron 30.0%
TAAAGAACCACTAATCTAGT+TGG + Chr6:6423398-6423417 None:intergenic 30.0%
TCAACAAAGTGAAGATAGTT+CGG - Chr6:6421544-6421563 MsG0680030633.01.T01:CDS 30.0%
TCTTTCATCAATACATCCAA+TGG - Chr6:6425781-6425800 MsG0680030633.01.T01:CDS 30.0%
TGTAAGCTACAACAATGTAT+TGG + Chr6:6425949-6425968 None:intergenic 30.0%
TTGAACGGTTGTAATGTATA+GGG - Chr6:6425195-6425214 MsG0680030633.01.T01:intron 30.0%
TTGTTAGGTTTAAACTTGAG+TGG + Chr6:6424536-6424555 None:intergenic 30.0%
TTTCCGTGTAATGAAAAAAC+TGG - Chr6:6426339-6426358 MsG0680030633.01.T01:CDS 30.0%
TTTGTATCAACCAATGGTAT+TGG - Chr6:6423769-6423788 MsG0680030633.01.T01:intron 30.0%
TTTGTTAGACACATTTGATG+TGG + Chr6:6423741-6423760 None:intergenic 30.0%
! AAATAGGCTTAATTTTGCAG+AGG - Chr6:6425530-6425549 MsG0680030633.01.T01:intron 30.0%
! AATAGTTTTCTGCATTTGGA+CGG + Chr6:6422728-6422747 None:intergenic 30.0%
! ATGTTGGTCTATAAGATATG+TGG + Chr6:6424696-6424715 None:intergenic 30.0%
! GTATTGATGAAGACATTGAA+CGG - Chr6:6425180-6425199 MsG0680030633.01.T01:intron 30.0%
! TAGAGAATGTGATGTTTTCA+TGG - Chr6:6423132-6423151 MsG0680030633.01.T01:intron 30.0%
! TTTGGAGTAGAAAATGCTAA+GGG - Chr6:6423194-6423213 MsG0680030633.01.T01:intron 30.0%
! TTTGTCATTTGTCTTTAGTG+AGG - Chr6:6421766-6421785 MsG0680030633.01.T01:intron 30.0%
!! AAGTATTTTGAAGGTTTTGG+AGG - Chr6:6424168-6424187 MsG0680030633.01.T01:intron 30.0%
!! ACTTGACGTCTTTAAGTTTT+GGG + Chr6:6424666-6424685 None:intergenic 30.0%
!! ATTTTGTTTGTGTATAGGGA+AGG - Chr6:6422498-6422517 MsG0680030633.01.T01:intron 30.0%
!! CTTGAATTTTAGTATGTGAG+TGG - Chr6:6423329-6423348 MsG0680030633.01.T01:intron 30.0%
!! TACTTGACGTCTTTAAGTTT+TGG + Chr6:6424667-6424686 None:intergenic 30.0%
!!! AGTATTTTGAAGGTTTTGGA+GGG - Chr6:6424169-6424188 MsG0680030633.01.T01:intron 30.0%
!!! GGATCAAGTTTTGTTAATGT+TGG - Chr6:6421863-6421882 MsG0680030633.01.T01:intron 30.0%
!!! GTTTGGAAGAAGTATTTTGA+AGG - Chr6:6424159-6424178 MsG0680030633.01.T01:intron 30.0%
!!! TGTTTTGATGACTCTTTTGT+TGG - Chr6:6426212-6426231 MsG0680030633.01.T01:CDS 30.0%
!!! TTTTGGAGTAGAAAATGCTA+AGG - Chr6:6423193-6423212 MsG0680030633.01.T01:intron 30.0%
!!! TTTTTAAGTTGGATGGAGAA+TGG - Chr6:6422432-6422451 MsG0680030633.01.T01:intron 30.0%
AAATAATGCTCTTCTCATGG+AGG + Chr6:6423621-6423640 None:intergenic 35.0%
AACCTCAAAACTTCGATCAA+CGG + Chr6:6421585-6421604 None:intergenic 35.0%
AAGTATATGAGAATCGGGTA+TGG - Chr6:6423035-6423054 MsG0680030633.01.T01:intron 35.0%
ACAAGTAGTATCAAAGCTCT+TGG + Chr6:6424638-6424657 None:intergenic 35.0%
AGAAAATGCTAAGGGATTGT+TGG - Chr6:6423202-6423221 MsG0680030633.01.T01:intron 35.0%
AGTATATGAGAATCGGGTAT+GGG - Chr6:6423036-6423055 MsG0680030633.01.T01:intron 35.0%
ATACCCAAACCAGTCAAAAT+GGG + Chr6:6422620-6422639 None:intergenic 35.0%
ATTGAACGGTTGTGATGTAT+AGG + Chr6:6425760-6425779 None:intergenic 35.0%
CAGGTAAGTATATGAGAATC+GGG - Chr6:6423030-6423049 MsG0680030633.01.T01:intron 35.0%
CATACCCTAAGAGATGAATA+TGG + Chr6:6424140-6424159 None:intergenic 35.0%
GATTGTGTCTAAAAATGAGG+TGG - Chr6:6421473-6421492 MsG0680030633.01.T01:CDS 35.0%
GGAGTACATCTCATTATGAT+CGG - Chr6:6424112-6424131 MsG0680030633.01.T01:intron 35.0%
GGATCCATATTCATCTCTTA+GGG - Chr6:6424133-6424152 MsG0680030633.01.T01:intron 35.0%
GTCTAAAAATGAGGTGGTAA+AGG - Chr6:6421479-6421498 MsG0680030633.01.T01:CDS 35.0%
GTCTTCATCAATACATCCAA+TGG + Chr6:6425174-6425193 None:intergenic 35.0%
GTTGTGATGTATAGGGAATA+TGG + Chr6:6425752-6425771 None:intergenic 35.0%
TACAACAATGTATTGGGAGA+TGG + Chr6:6425942-6425961 None:intergenic 35.0%
TATTGGGAGATGGAGATTAA+AGG + Chr6:6425932-6425951 None:intergenic 35.0%
TGTCTTTAGTGAGGAGTAAT+CGG - Chr6:6421775-6421794 MsG0680030633.01.T01:intron 35.0%
TGTGGAAATGTTGCAAAAGA+TGG - Chr6:6422071-6422090 MsG0680030633.01.T01:intron 35.0%
TTCATCTCTTAGGGTATGTT+TGG - Chr6:6424142-6424161 MsG0680030633.01.T01:intron 35.0%
TTGAACGGTTGTGATGTATA+GGG + Chr6:6425759-6425778 None:intergenic 35.0%
TTGGAGATAGAACAACTGAA+AGG - Chr6:6426313-6426332 MsG0680030633.01.T01:CDS 35.0%
! AATGTTGGGTATTTAGGGTT+TGG - Chr6:6421878-6421897 MsG0680030633.01.T01:intron 35.0%
! AGAATGTGATGTTTTCATGG+TGG - Chr6:6423135-6423154 MsG0680030633.01.T01:intron 35.0%
! ATAGTTTTCTGCATTTGGAC+GGG + Chr6:6422727-6422746 None:intergenic 35.0%
! CACACTCAAGCAAATTTGTT+AGG + Chr6:6424551-6424570 None:intergenic 35.0%
! GAGCTTTGATACTACTTGTT+CGG - Chr6:6424639-6424658 MsG0680030633.01.T01:intron 35.0%
! GTTTTGTATGCATTGAGTCA+TGG - Chr6:6422009-6422028 MsG0680030633.01.T01:intron 35.0%
! TGTTTGAAGCCACATAAACA+TGG + Chr6:6425864-6425883 None:intergenic 35.0%
! TTTTCCCCGATTTCAAAACA+CGG - Chr6:6422649-6422668 MsG0680030633.01.T01:intron 35.0%
!! AAAACTGCGATTGGTGTTTT+AGG - Chr6:6421672-6421691 MsG0680030633.01.T01:intron 35.0%
!! AAGCTTTGTTTGGGTAGATA+GGG + Chr6:6425898-6425917 None:intergenic 35.0%
!! TAAACTTAGGAAAGGGTGTT+TGG + Chr6:6425306-6425287 None:intergenic 35.0%
!! TATCAACCAATGGTATTGGT+TGG - Chr6:6423773-6423792 MsG0680030633.01.T01:intron 35.0%
!! TGTTGACTTTCTCAAGTGAA+AGG + Chr6:6421530-6421549 None:intergenic 35.0%
!!! AAACTTAGGAAAGGGTGTTT+TGG - Chr6:6425288-6425307 MsG0680030633.01.T01:intron 35.0%
!!! AACTTAGGAAAGGGTGTTTT+GGG - Chr6:6425289-6425308 MsG0680030633.01.T01:intron 35.0%
!!! ATTTTGACTGGTTTGGGTAT+GGG - Chr6:6422620-6422639 MsG0680030633.01.T01:intron 35.0%
!!! CCTCCAGTTTTTTCATTACA+CGG + Chr6:6426345-6426364 None:intergenic 35.0%
!!! GTATTTTGAAGGTTTTGGAG+GGG - Chr6:6424170-6424189 MsG0680030633.01.T01:intron 35.0%
!!! TCATACCCGTGTTTTGAAAT+CGG + Chr6:6422658-6422677 None:intergenic 35.0%
!!! TTGATCGAAGTTTTGAGGTT+TGG - Chr6:6421585-6421604 MsG0680030633.01.T01:CDS 35.0%
AAAAAGAGGTTGAAGAGGAG+TGG - Chr6:6422154-6422173 MsG0680030633.01.T01:intron 40.0%
AAAGTGAAGATAGTTCGGTC+AGG - Chr6:6421549-6421568 MsG0680030633.01.T01:CDS 40.0%
AGAAGGCTAATGAAAAGGTG+AGG - Chr6:6422109-6422128 MsG0680030633.01.T01:intron 40.0%
AGACTTGATGCAACATGCTT+TGG - Chr6:6426288-6426307 MsG0680030633.01.T01:CDS 40.0%
ATATCCCCTCCAAAATGTTG+GGG - Chr6:6424353-6424372 MsG0680030633.01.T01:intron 40.0%
ATATTATTCAATGCGGGGAC+AGG - Chr6:6422928-6422947 MsG0680030633.01.T01:intron 40.0%
CAACAACATGTCAATGCTTC+AGG - Chr6:6424396-6424415 MsG0680030633.01.T01:intron 40.0%
CATACCCAAACCAGTCAAAA+TGG + Chr6:6422621-6422640 None:intergenic 40.0%
CATATCCCCTCCAAAATGTT+GGG - Chr6:6424352-6424371 MsG0680030633.01.T01:intron 40.0%
CCGAACTAAACCCAATTTGA+CGG - Chr6:6422588-6422607 MsG0680030633.01.T01:intron 40.0%
CCGTCAAATTGGGTTTAGTT+CGG + Chr6:6422591-6422610 None:intergenic 40.0%
CCGTGTAATGAAAAAACTGG+AGG - Chr6:6426342-6426361 MsG0680030633.01.T01:CDS 40.0%
CCTTAGAAATCAGCAAGATG+CGG - Chr6:6426049-6426068 MsG0680030633.01.T01:CDS 40.0%
CGAACTAAACCCAATTTGAC+GGG - Chr6:6422589-6422608 MsG0680030633.01.T01:intron 40.0%
CGGATCCATATTCATCTCTT+AGG - Chr6:6424132-6424151 MsG0680030633.01.T01:intron 40.0%
GATTTAAGCGCGTGAAGTAA+AGG + Chr6:6421708-6421727 None:intergenic 40.0%
GTATATGAGAATCGGGTATG+GGG - Chr6:6423037-6423056 MsG0680030633.01.T01:intron 40.0%
GTCTTTAGTGAGGAGTAATC+GGG - Chr6:6421776-6421795 MsG0680030633.01.T01:intron 40.0%
TACCCAAACCAGTCAAAATG+GGG + Chr6:6422619-6422638 None:intergenic 40.0%
TAGAAATGAAGCTGCAGGAA+AGG - Chr6:6426368-6426387 MsG0680030633.01.T01:CDS 40.0%
TAGACAGCACCATGTTTATG+TGG - Chr6:6425852-6425871 MsG0680030633.01.T01:intron 40.0%
TATTATTCAATGCGGGGACA+GGG - Chr6:6422929-6422948 MsG0680030633.01.T01:intron 40.0%
TCACAAGAAAATGCATGACC+TGG - Chr6:6426260-6426279 MsG0680030633.01.T01:CDS 40.0%
TCATATCCCCTCCAAAATGT+TGG - Chr6:6424351-6424370 MsG0680030633.01.T01:intron 40.0%
TGAAAAGGTGAGGAGGATAT+TGG - Chr6:6422119-6422138 MsG0680030633.01.T01:intron 40.0%
TGGGTAGAAATTGGAGATTG+TGG - Chr6:6422366-6422385 MsG0680030633.01.T01:intron 40.0%
TTCAAAACACGGGTATGAGA+CGG - Chr6:6422660-6422679 MsG0680030633.01.T01:intron 40.0%
TTCAATTTCTCATCCCCGTT+GGG - Chr6:6422993-6423012 MsG0680030633.01.T01:intron 40.0%
TTCGTGTGCGATGTTTAGTT+TGG - Chr6:6421632-6421651 MsG0680030633.01.T01:intron 40.0%
TTGTATGCATTGAGTCATGG+CGG - Chr6:6422012-6422031 MsG0680030633.01.T01:intron 40.0%
TTTAAAAACCCAGCACGGTT+TGG + Chr6:6425631-6425650 None:intergenic 40.0%
TTTACAACCTCAACACACCT+AGG + Chr6:6423106-6423125 None:intergenic 40.0%
TTTCCCCGATTTCAAAACAC+GGG - Chr6:6422650-6422669 MsG0680030633.01.T01:intron 40.0%
TTTGTTGGGGATGGTTAAGT+CGG - Chr6:6421830-6421849 MsG0680030633.01.T01:intron 40.0%
! AAATTGGGTTTAGTTCGGGT+GGG + Chr6:6422586-6422605 None:intergenic 40.0%
! CGTCAAATTGGGTTTAGTTC+GGG + Chr6:6422590-6422609 None:intergenic 40.0%
! GGTTAAGCTAGGGTTTGTTT+CGG - Chr6:6421806-6421825 MsG0680030633.01.T01:intron 40.0%
! TAGTGGAAAAGGAGTACAAG+TGG + Chr6:6423708-6423727 None:intergenic 40.0%
! TATTTAGGGTTTGGATCGGA+TGG - Chr6:6421887-6421906 MsG0680030633.01.T01:intron 40.0%
! TGGGTATTTAGGGTTTGGAT+CGG - Chr6:6421883-6421902 MsG0680030633.01.T01:intron 40.0%
! TTGCATCAAGTCTTTTCACC+AGG + Chr6:6426281-6426300 None:intergenic 40.0%
!! AGGGTTTGTTTCGGTTTTGT+TGG - Chr6:6421815-6421834 MsG0680030633.01.T01:intron 40.0%
!! CGCATCTTGCTGATTTCTAA+GGG + Chr6:6426051-6426070 None:intergenic 40.0%
!! GAAGCTTTGTTTGGGTAGAT+AGG + Chr6:6425899-6425918 None:intergenic 40.0%
!! GATGCAACATGCTTTGGAAT+TGG - Chr6:6426294-6426313 MsG0680030633.01.T01:CDS 40.0%
!! GTTTGGTGGGTTTATTGTGT+GGG - Chr6:6421945-6421964 MsG0680030633.01.T01:intron 40.0%
!! TGTTTGGTGGGTTTATTGTG+TGG - Chr6:6421944-6421963 MsG0680030633.01.T01:intron 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG + Chr6:6422656-6422675 None:intergenic 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG + Chr6:6422657-6422676 None:intergenic 40.0%
!!! CATTTTGACTGGTTTGGGTA+TGG - Chr6:6422619-6422638 MsG0680030633.01.T01:intron 40.0%
!!! GGGTTTGTTTCGGTTTTGTT+GGG - Chr6:6421816-6421835 MsG0680030633.01.T01:intron 40.0%
!!! GGTTTGTTTCGGTTTTGTTG+GGG - Chr6:6421817-6421836 MsG0680030633.01.T01:intron 40.0%
!!! TTCCCCATTTTGACTGGTTT+GGG - Chr6:6422614-6422633 MsG0680030633.01.T01:intron 40.0%
!!! TTTCCCCATTTTGACTGGTT+TGG - Chr6:6422613-6422632 MsG0680030633.01.T01:intron 40.0%
AAACCCAACACAACTCTCTC+TGG + Chr6:6421993-6422012 None:intergenic 45.0%
AAAGGTGAGGAGGATATTGG+AGG - Chr6:6422122-6422141 MsG0680030633.01.T01:intron 45.0%
AACACACCTAGGCATGACAA+TGG + Chr6:6423095-6423114 None:intergenic 45.0%
ACACACCTAGGCATGACAAT+GGG + Chr6:6423094-6423113 None:intergenic 45.0%
AGGCTAATGAAAAGGTGAGG+AGG - Chr6:6422112-6422131 MsG0680030633.01.T01:intron 45.0%
ATAGTGTTTCCAAACCGTGC+TGG - Chr6:6425619-6425638 MsG0680030633.01.T01:intron 45.0%
ATGGGGAAAACCCGTCAAAT+TGG + Chr6:6422602-6422621 None:intergenic 45.0%
CCAAGACCAACCAATACCAT+TGG + Chr6:6423782-6423801 None:intergenic 45.0%
CTCAAAACTTCGATCAACGG+TGG + Chr6:6421582-6421601 None:intergenic 45.0%
GAGCGAGAAGGCTAATGAAA+AGG - Chr6:6422104-6422123 MsG0680030633.01.T01:intron 45.0%
GCGAGAAAAAGAGGTTGAAG+AGG - Chr6:6422149-6422168 MsG0680030633.01.T01:intron 45.0%
GGAAGTAGAAATGAAGCTGC+AGG - Chr6:6426363-6426382 MsG0680030633.01.T01:CDS 45.0%
GGACGGGTCAAGTGTTAAAT+CGG - Chr6:6422241-6422260 MsG0680030633.01.T01:intron 45.0%
GGAGAAAATGAAGAGCGAGA+AGG - Chr6:6422092-6422111 MsG0680030633.01.T01:intron 45.0%
GGGCTAAGATGGTTAAGCTA+GGG - Chr6:6421796-6421815 MsG0680030633.01.T01:intron 45.0%
GGTCAATGCACTTGCTTCAT+TGG - Chr6:6421500-6421519 MsG0680030633.01.T01:CDS 45.0%
GGTTAAGTCGGGTCATATGA+TGG - Chr6:6421842-6421861 MsG0680030633.01.T01:intron 45.0%
GTTCAATTTCTCATCCCCGT+TGG - Chr6:6422992-6423011 MsG0680030633.01.T01:intron 45.0%
GTTTGGGTAGATAGGGAAGA+GGG + Chr6:6425891-6425910 None:intergenic 45.0%
TAGTGTTTCCAAACCGTGCT+GGG - Chr6:6425620-6425639 MsG0680030633.01.T01:intron 45.0%
TCAAAACACGGGTATGAGAC+GGG - Chr6:6422661-6422680 MsG0680030633.01.T01:intron 45.0%
TGGGGAAAACCCGTCAAATT+GGG + Chr6:6422601-6422620 None:intergenic 45.0%
TGTATGCATTGAGTCATGGC+GGG - Chr6:6422013-6422032 MsG0680030633.01.T01:intron 45.0%
TGTGATGTCTTCCTCTCTTG+TGG + Chr6:6424423-6424442 None:intergenic 45.0%
TGTTTGGGTAGATAGGGAAG+AGG + Chr6:6425892-6425911 None:intergenic 45.0%
TTGTTGGGGATGGTTAAGTC+GGG - Chr6:6421831-6421850 MsG0680030633.01.T01:intron 45.0%
! AAGCTCTTGGTTCGACTTGA+TGG + Chr6:6424625-6424644 None:intergenic 45.0%
! ACTATGAGTCGACTCAACAG+TGG - Chr6:6422215-6422234 MsG0680030633.01.T01:intron 45.0%
! AGGTTGAAGAGGAGTGGATT+GGG - Chr6:6422160-6422179 MsG0680030633.01.T01:intron 45.0%
! ATTTGGACGGGTTTGGGTAT+GGG + Chr6:6422715-6422734 None:intergenic 45.0%
! CAAATTGGGTTTAGTTCGGG+TGG + Chr6:6422587-6422606 None:intergenic 45.0%
! CACCGTTGATCGAAGTTTTG+AGG - Chr6:6421580-6421599 MsG0680030633.01.T01:CDS 45.0%
! TATGTTGGATGCAGGTGTTG+TGG - Chr6:6421919-6421938 MsG0680030633.01.T01:intron 45.0%
! TTCTGCATTTGGACGGGTTT+GGG + Chr6:6422721-6422740 None:intergenic 45.0%
! TTTCTGCATTTGGACGGGTT+TGG + Chr6:6422722-6422741 None:intergenic 45.0%
!! ACTGGTTTGGGTATGGGTTT+GGG - Chr6:6422626-6422645 MsG0680030633.01.T01:intron 45.0%
!! CCAATGGTATTGGTTGGTCT+TGG - Chr6:6423779-6423798 MsG0680030633.01.T01:intron 45.0%
!! CCGCATCTTGCTGATTTCTA+AGG + Chr6:6426052-6426071 None:intergenic 45.0%
!!! TGTTTCGGTTTTGTTGGGGA+TGG - Chr6:6421821-6421840 MsG0680030633.01.T01:intron 45.0%
!! AAAAGAAATTAAATTAAAAT+AGG - Chr6:6425514-6425533 MsG0680030633.01.T01:intron 5.0%
!!! GATTAAATATTAATTTTTAT+GGG + Chr6:6425228-6425247 None:intergenic 5.0%
!!! TGATTAAATATTAATTTTTA+TGG + Chr6:6425229-6425248 None:intergenic 5.0%
AAAGAGCCAAACCCGAGTCA+TGG + Chr6:6421749-6421768 None:intergenic 50.0%
ACGGGTTTGGGTATGGGTTT+GGG + Chr6:6422709-6422728 None:intergenic 50.0%
ATGAGAATCGGGTATGGGGA+TGG - Chr6:6423041-6423060 MsG0680030633.01.T01:intron 50.0%
ATGCTTCAGGACCACAAGAG+AGG - Chr6:6424409-6424428 MsG0680030633.01.T01:intron 50.0%
CACACCTAGGCATGACAATG+GGG + Chr6:6423093-6423112 None:intergenic 50.0%
CGACCAGAGAGAGTTGTGTT+GGG - Chr6:6421987-6422006 MsG0680030633.01.T01:intron 50.0%
CGGGCTAAGATGGTTAAGCT+AGG - Chr6:6421795-6421814 MsG0680030633.01.T01:intron 50.0%
CTACGGTGAGAGACCTCTAT+AGG - Chr6:6425091-6425110 MsG0680030633.01.T01:intron 50.0%
GACCTCTATAGGTCTCCTAC+CGG - Chr6:6425102-6425121 MsG0680030633.01.T01:intron 50.0%
GAGGAGTAATCGGGCTAAGA+TGG - Chr6:6421785-6421804 MsG0680030633.01.T01:intron 50.0%
GAGGTTGAAGAGGAGTGGAT+TGG - Chr6:6422159-6422178 MsG0680030633.01.T01:intron 50.0%
GGAGGTGATGCGAGAAAAAG+AGG - Chr6:6422140-6422159 MsG0680030633.01.T01:intron 50.0%
GTGGGTTTATTGTGTGGGAC+CGG - Chr6:6421950-6421969 MsG0680030633.01.T01:intron 50.0%
GTTACCCTACCCATACCCAA+CGG + Chr6:6423011-6423030 None:intergenic 50.0%
GTTTGGATCGTGTGAATCGC+AGG - Chr6:6421602-6421621 MsG0680030633.01.T01:CDS 50.0%
TAGGGTTTGGATCGGATGGT+CGG - Chr6:6421891-6421910 MsG0680030633.01.T01:intron 50.0%
TCGACCAGAGAGAGTTGTGT+TGG - Chr6:6421986-6422005 MsG0680030633.01.T01:intron 50.0%
TCTATAGGTCTCCTACCGGT+GGG - Chr6:6425106-6425125 MsG0680030633.01.T01:intron 50.0%
TGAAAAGACGCGCCATGACT+CGG - Chr6:6421734-6421753 MsG0680030633.01.T01:intron 50.0%
TGAAGCTGCAGGAAAGGAAG+AGG - Chr6:6426374-6426393 MsG0680030633.01.T01:CDS 50.0%
TGAGAATCGGGTATGGGGAT+GGG - Chr6:6423042-6423061 MsG0680030633.01.T01:intron 50.0%
TGGGTTTATTGTGTGGGACC+GGG - Chr6:6421951-6421970 MsG0680030633.01.T01:intron 50.0%
TGTCATGCCTAGGTGTGTTG+AGG - Chr6:6423096-6423115 MsG0680030633.01.T01:intron 50.0%
TTACCCTACCCATACCCAAC+GGG + Chr6:6423010-6423029 None:intergenic 50.0%
TTAGTTCGGGTGGGTAACCA+CGG + Chr6:6422577-6422596 None:intergenic 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - Chr6:6422999-6423018 MsG0680030633.01.T01:intron 50.0%
TTGCTTGACTCAGGGTTCAG+TGG - Chr6:6422188-6422207 MsG0680030633.01.T01:intron 50.0%
TTGGGTATGGGTAGGGTAAC+AGG - Chr6:6423011-6423030 MsG0680030633.01.T01:intron 50.0%
TTTATTGTGTGGGACCGGGT+TGG - Chr6:6421955-6421974 MsG0680030633.01.T01:intron 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - Chr6:6422998-6423017 MsG0680030633.01.T01:intron 50.0%
! AGGTGTTGTGGAGTGTTTGG+TGG - Chr6:6421931-6421950 MsG0680030633.01.T01:intron 50.0%
! CAAGATGCGGCAAGTTGAAC+GGG - Chr6:6426062-6426081 MsG0680030633.01.T01:CDS 50.0%
! CATTTGGACGGGTTTGGGTA+TGG + Chr6:6422716-6422735 None:intergenic 50.0%
! GAGTCGACTCAACAGTGGAT+TGG - Chr6:6422220-6422239 MsG0680030633.01.T01:intron 50.0%
! GCAAGATGCGGCAAGTTGAA+CGG - Chr6:6426061-6426080 MsG0680030633.01.T01:CDS 50.0%
! GGTGTTGTGGAGTGTTTGGT+GGG - Chr6:6421932-6421951 MsG0680030633.01.T01:intron 50.0%
! TGCAGGTGTTGTGGAGTGTT+TGG - Chr6:6421928-6421947 MsG0680030633.01.T01:intron 50.0%
! TTTGGGTATGGGTTTGGGGT+GGG + Chr6:6422704-6422723 None:intergenic 50.0%
!! CGACTCAACAGTGGATTGGA+CGG - Chr6:6422224-6422243 MsG0680030633.01.T01:intron 50.0%
!! CGGGTTTTCCCCATTTTGAC+TGG - Chr6:6422608-6422627 MsG0680030633.01.T01:intron 50.0%
!! GACTCAACAGTGGATTGGAC+GGG - Chr6:6422225-6422244 MsG0680030633.01.T01:intron 50.0%
!! GACTGGTTTGGGTATGGGTT+TGG - Chr6:6422625-6422644 MsG0680030633.01.T01:intron 50.0%
!! GAGACGGGTAACGGGTATAT+AGG - Chr6:6422676-6422695 MsG0680030633.01.T01:intron 50.0%
!! TCATGGCGGGTTGAGGTTTA+AGG - Chr6:6422026-6422045 MsG0680030633.01.T01:intron 50.0%
!! TTGAAGAGGAGTGGATTGGG+AGG - Chr6:6422163-6422182 MsG0680030633.01.T01:intron 50.0%
!! TTGTTGTTTCCTTGCCGCCT+CGG + Chr6:6424382-6424401 None:intergenic 50.0%
AAAAAGTGGGGGTCTCCCAC+CGG + Chr6:6425124-6425143 None:intergenic 55.0%
ACCTAGGCATGACAATGGGG+CGG + Chr6:6423090-6423109 None:intergenic 55.0%
ACGGGTATGAGACGGGTAAC+GGG - Chr6:6422668-6422687 MsG0680030633.01.T01:intron 55.0%
AGGGTTTGGATCGGATGGTC+GGG - Chr6:6421892-6421911 MsG0680030633.01.T01:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - Chr6:6423004-6423023 MsG0680030633.01.T01:intron 55.0%
CACCGGTAGGAGACCTATAG+AGG + Chr6:6425107-6425126 None:intergenic 55.0%
CACGGGTATGAGACGGGTAA+CGG - Chr6:6422667-6422686 MsG0680030633.01.T01:intron 55.0%
CGGGTTTGGGTATGGGTTTG+GGG + Chr6:6422708-6422727 None:intergenic 55.0%
CTCTATAGGTCTCCTACCGG+TGG - Chr6:6425105-6425124 MsG0680030633.01.T01:intron 55.0%
GAAAAGACGCGCCATGACTC+GGG - Chr6:6421735-6421754 MsG0680030633.01.T01:intron 55.0%
GAGAATCGGGTATGGGGATG+GGG - Chr6:6423043-6423062 MsG0680030633.01.T01:intron 55.0%
GCGAGAGGTGGATCATGTGT+TGG + Chr6:6424598-6424617 None:intergenic 55.0%
GGCAACAAAACCCATACCCG+TGG - Chr6:6422557-6422576 MsG0680030633.01.T01:intron 55.0%
GGGAGGAGTTGCTTGACTCA+GGG - Chr6:6422180-6422199 MsG0680030633.01.T01:intron 55.0%
GTTTGGGTATGGGTTTGGGG+TGG + Chr6:6422705-6422724 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG + Chr6:6423009-6423028 None:intergenic 55.0%
TAGTTCGGGTGGGTAACCAC+GGG + Chr6:6422576-6422595 None:intergenic 55.0%
TGGGAGGAGTTGCTTGACTC+AGG - Chr6:6422179-6422198 MsG0680030633.01.T01:intron 55.0%
! GACGGGTTTGGGTATGGGTT+TGG + Chr6:6422710-6422729 None:intergenic 55.0%
! GGGCTCCCCAACATTTTGGA+GGG + Chr6:6424361-6424380 None:intergenic 55.0%
!! CATTGAGTCATGGCGGGTTG+AGG - Chr6:6422019-6422038 MsG0680030633.01.T01:intron 55.0%
!! GGCTCCCCAACATTTTGGAG+GGG + Chr6:6424360-6424379 None:intergenic 55.0%
!! TGGCGGGTTGAGGTTTAAGG+CGG - Chr6:6422029-6422048 MsG0680030633.01.T01:intron 55.0%
!! TGTTGTTTCCTTGCCGCCTC+GGG + Chr6:6424381-6424400 None:intergenic 55.0%
AAATGTTGGGGAGCCCGAGG+CGG - Chr6:6424365-6424384 MsG0680030633.01.T01:intron 60.0%
AACCCCATCCCCATCCCCAA+CGG + Chr6:6422975-6422994 None:intergenic 60.0%
ATACCCGACCCGTTGGGGAT+GGG - Chr6:6422963-6422982 MsG0680030633.01.T01:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG - Chr6:6423003-6423022 MsG0680030633.01.T01:intron 60.0%
CCAAAATGTTGGGGAGCCCG+AGG - Chr6:6424362-6424381 MsG0680030633.01.T01:intron 60.0%
CCTAGGCATGACAATGGGGC+GGG + Chr6:6423089-6423108 None:intergenic 60.0%
CGGGCTGCTATGTTGGATGC+AGG - Chr6:6421911-6421930 MsG0680030633.01.T01:intron 60.0%
CTAGGCATGACAATGGGGCG+GGG + Chr6:6423088-6423107 None:intergenic 60.0%
GGATGGTCGGGCTGCTATGT+TGG - Chr6:6421904-6421923 MsG0680030633.01.T01:intron 60.0%
GGCGAAGGAGGTTGGAGTTG+TGG - Chr6:6422053-6422072 MsG0680030633.01.T01:intron 60.0%
GGGTGGGTAACCACGGGTAT+GGG + Chr6:6422570-6422589 None:intergenic 60.0%
TCAATGCGGGGACAGGGATG+AGG - Chr6:6422935-6422954 MsG0680030633.01.T01:intron 60.0%
! CCTCGGGCTCCCCAACATTT+TGG + Chr6:6424365-6424384 None:intergenic 60.0%
! CGACTTGATGGCAGAGCGAG+AGG + Chr6:6424613-6424632 None:intergenic 60.0%
! CGGGCTCCCCAACATTTTGG+AGG + Chr6:6424362-6424381 None:intergenic 60.0%
! CGGGTTGAGGTTTAAGGCGG+TGG - Chr6:6422032-6422051 MsG0680030633.01.T01:intron 60.0%
! CTTGATGGCAGAGCGAGAGG+TGG + Chr6:6424610-6424629 None:intergenic 60.0%
! GAGGTTTAAGGCGGTGGCGA+AGG - Chr6:6422038-6422057 MsG0680030633.01.T01:intron 60.0%
! GGTCGACTCAGACTCCAACC+CGG + Chr6:6421972-6421991 None:intergenic 60.0%
! GTTTAAGGCGGTGGCGAAGG+AGG - Chr6:6422041-6422060 MsG0680030633.01.T01:intron 60.0%
AAGGCGGTGGCGAAGGAGGT+TGG - Chr6:6422045-6422064 MsG0680030633.01.T01:intron 65.0%
ACCCCATCCCCATCCCCAAC+GGG + Chr6:6422974-6422993 None:intergenic 65.0%
ACCCGTTGGGGATGGGGATG+GGG - Chr6:6422970-6422989 MsG0680030633.01.T01:intron 65.0%
ATCCCCATCCCCAACGGGTC+GGG + Chr6:6422969-6422988 None:intergenic 65.0%
ATGCGGGGACAGGGATGAGG+CGG - Chr6:6422938-6422957 MsG0680030633.01.T01:intron 65.0%
CATCCCCATCCCCAACGGGT+CGG + Chr6:6422970-6422989 None:intergenic 65.0%
CATGACAATGGGGCGGGGTG+GGG + Chr6:6423083-6423102 None:intergenic 65.0%
CCCGCCCCATTGTCATGCCT+AGG - Chr6:6423086-6423105 MsG0680030633.01.T01:intron 65.0%
CGGGTGGGTAACCACGGGTA+TGG + Chr6:6422571-6422590 None:intergenic 65.0%
GACCCGTTGGGGATGGGGAT+GGG - Chr6:6422969-6422988 MsG0680030633.01.T01:intron 65.0%
GATACCCGACCCGTTGGGGA+TGG - Chr6:6422962-6422981 MsG0680030633.01.T01:intron 65.0%
GCATGACAATGGGGCGGGGT+GGG + Chr6:6423084-6423103 None:intergenic 65.0%
TACCCGACCCGTTGGGGATG+GGG - Chr6:6422964-6422983 MsG0680030633.01.T01:intron 65.0%
! GACGCGCCATGACTCGGGTT+TGG - Chr6:6421740-6421759 MsG0680030633.01.T01:intron 65.0%
ACAATGGGGCGGGGTGGGGA+CGG + Chr6:6423079-6423098 None:intergenic 70.0%
AGTGGGGGTCTCCCACCGGT+AGG + Chr6:6425120-6425139 None:intergenic 70.0%
CGACCCGTTGGGGATGGGGA+TGG - Chr6:6422968-6422987 MsG0680030633.01.T01:intron 70.0%
CGGGGATACCCGACCCGTTG+GGG - Chr6:6422958-6422977 MsG0680030633.01.T01:intron 70.0%
GCGGGGATACCCGACCCGTT+GGG - Chr6:6422957-6422976 MsG0680030633.01.T01:intron 70.0%
GGCATGACAATGGGGCGGGG+TGG + Chr6:6423085-6423104 None:intergenic 70.0%
TGCGGGGACAGGGATGAGGC+GGG - Chr6:6422939-6422958 MsG0680030633.01.T01:intron 70.0%
CAATGGGGCGGGGTGGGGAC+GGG + Chr6:6423078-6423097 None:intergenic 75.0%
GCGGGGACAGGGATGAGGCG+GGG - Chr6:6422940-6422959 MsG0680030633.01.T01:intron 75.0%
GGCGGGGATACCCGACCCGT+TGG - Chr6:6422956-6422975 MsG0680030633.01.T01:intron 75.0%
TTGGGGAGCCCGAGGCGGCA+AGG - Chr6:6424370-6424389 MsG0680030633.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6421456 6426410 6421456 ID=MsG0680030633.01;Name=MsG0680030633.01
Chr6 mRNA 6421456 6426410 6421456 ID=MsG0680030633.01.T01;Parent=MsG0680030633.01;Name=MsG0680030633.01.T01;_AED=0.52;_eAED=0.52;_QI=0|0|0|0.5|1|1|4|0|252
Chr6 exon 6426049 6426410 6426049 ID=MsG0680030633.01.T01:exon:6184;Parent=MsG0680030633.01.T01
Chr6 exon 6425694 6425840 6425694 ID=MsG0680030633.01.T01:exon:6183;Parent=MsG0680030633.01.T01
Chr6 exon 6424834 6424916 6424834 ID=MsG0680030633.01.T01:exon:6182;Parent=MsG0680030633.01.T01
Chr6 exon 6421456 6421622 6421456 ID=MsG0680030633.01.T01:exon:6181;Parent=MsG0680030633.01.T01
Chr6 CDS 6426049 6426410 6426049 ID=MsG0680030633.01.T01:cds;Parent=MsG0680030633.01.T01
Chr6 CDS 6425694 6425840 6425694 ID=MsG0680030633.01.T01:cds;Parent=MsG0680030633.01.T01
Chr6 CDS 6424834 6424916 6424834 ID=MsG0680030633.01.T01:cds;Parent=MsG0680030633.01.T01
Chr6 CDS 6421456 6421622 6421456 ID=MsG0680030633.01.T01:cds;Parent=MsG0680030633.01.T01
Gene Sequence

>MsG0680030633.01.T01

ATGTTCTTGCGTTATTTGATTGTGTCTAAAAATGAGGTGGTAAAGGTCAATGCACTTGCTTCATTGGTCAACCTTTCACTTGAGAAAGTCAACAAAGTGAAGATAGTTCGGTCAGGAATTGTTCCACCGTTGATCGAAGTTTTGAGGTTTGGATCGTGTGAATCGCAGGAACATGCTTCGTGTGCGATGTTTAGTTTGGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCTTTACTTCACGCGCTTAAATCAGAGAGTGAAAAGACGCGCCATGACTCGGGTTTGGCTCTTTGTCATTTGTCTTTAGTGAGGAGTAATCGGGCTAAGATGGTTAAGCTAGGTCATGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTGGAAATGTTGCAAAAGATGGAGAAAATGAAGAGCGAGAAGGCTAATGAAAAGGTGAGGAGGATATTGGAGGTGATGCGAGAAAAAGAGGTTGAAGAGGAGGATGAGGCGGGGATACCCGACCCGTTGGGGATGGGGATGGGGTTCAATTTCTCATCCCCGTTGGGTATGGGTAGGGTAACAGAAAGAAAAGAAAAATTTCACAAGAAAATGCATGACCTGGTGAAAAGACTTGATGCAACATGCTTTGGAATTGGAGATAGAACAACTGAAAGGAGTTTTCCGTGTAATGAAAAAACTGGAGGAAGTAGAAATGAAGCTGCAGGAAAGGAAGAGGAATTACCATTCTAA

Protein sequence

>MsG0680030633.01.T01

MFLRYLIVSKNEVVKVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLRFGSCESQEHASCAMFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSGLALCHLSLVRSNRAKMVKLGHGGLRFKAVAKEVGVVEMLQKMEKMKSEKANEKVRRILEVMREKEVEEEDEAGIPDPLGMGMGFNFSSPLGMGRVTERKEKFHKKMHDLVKRLDATCFGIGDRTTERSFPCNEKTGGSRNEAAGKEEELPF*