Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011640.01.T01 | XP_003598135.1 | 90.394 | 406 | 14 | 1 | 1 | 381 | 1 | 406 | 0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011640.01.T01 | D9UBX6 | 43.82 | 89 | 49 | 1 | 20 | 108 | 16 | 103 | 4.09E-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011640.01.T01 | G7IVB3 | 90.394 | 406 | 14 | 1 | 1 | 381 | 1 | 406 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000024.01 | MsG0380011640.01 | 0.819415 | 1.175429e-52 | 9.039377e-50 |
| MsG0180000983.01 | MsG0380011640.01 | 0.867343 | 1.467665e-65 | 5.107232e-62 |
| MsG0180003858.01 | MsG0380011640.01 | 0.811757 | 5.968061e-51 | 3.725486e-48 |
| MsG0180004099.01 | MsG0380011640.01 | 0.838814 | 2.299214e-57 | 3.115085e-54 |
| MsG0180004754.01 | MsG0380011640.01 | 0.808841 | 2.539898e-50 | 1.467608e-47 |
| MsG0180004970.01 | MsG0380011640.01 | 0.812173 | 4.842744e-51 | 3.057222e-48 |
| MsG0280010779.01 | MsG0380011640.01 | 0.815990 | 6.964215e-52 | 4.874660e-49 |
| MsG0380011640.01 | MsG0380011648.01 | 0.809989 | 1.440839e-50 | 8.583972e-48 |
| MsG0380011640.01 | MsG0380013636.01 | 0.806924 | 6.495493e-50 | 3.569807e-47 |
| MsG0380011640.01 | MsG0380015185.01 | 0.826055 | 3.347067e-54 | 3.104895e-51 |
| MsG0380011640.01 | MsG0380015190.01 | 0.865141 | 7.324041e-65 | 2.357856e-61 |
| MsG0380011640.01 | MsG0380015548.01 | 0.818101 | 2.336225e-52 | 1.732512e-49 |
| MsG0380011640.01 | MsG0380015805.01 | 0.811028 | 8.593830e-51 | 5.262670e-48 |
| MsG0380011640.01 | MsG0380016994.01 | 0.809191 | 2.137946e-50 | 1.247027e-47 |
| MsG0380011640.01 | MsG0380017159.01 | 0.802945 | 4.409209e-49 | 2.187855e-46 |
| MsG0380011640.01 | MsG0380017422.01 | 0.809373 | 1.953573e-50 | 1.145057e-47 |
| MsG0380011640.01 | MsG0480018346.01 | 0.844563 | 6.997299e-59 | 1.134210e-55 |
| MsG0380011640.01 | MsG0480021923.01 | 0.811940 | 5.445311e-51 | 3.415702e-48 |
| MsG0380011640.01 | MsG0480022331.01 | 0.816295 | 5.951451e-52 | 4.200932e-49 |
| MsG0380011640.01 | MsG0480023130.01 | 0.826603 | 2.478485e-54 | 2.335128e-51 |
| MsG0380011640.01 | MsG0580024506.01 | 0.814269 | 1.678910e-51 | 1.121406e-48 |
| MsG0380011640.01 | MsG0580025766.01 | 0.811864 | 5.656366e-51 | 3.540939e-48 |
| MsG0380011640.01 | MsG0580026307.01 | 0.857677 | 1.387174e-62 | 3.451377e-59 |
| MsG0380011640.01 | MsG0580026309.01 | 0.803817 | 2.908858e-49 | 1.476099e-46 |
| MsG0380011640.01 | MsG0580029298.01 | 0.804350 | 2.253506e-49 | 1.159288e-46 |
| MsG0380011640.01 | MsG0580029494.01 | 0.813138 | 2.978982e-51 | 1.929455e-48 |
| MsG0380011640.01 | MsG0580029496.01 | 0.882287 | 1.182651e-70 | 7.162574e-67 |
| MsG0380011640.01 | MsG0580029640.01 | 0.804754 | 1.855719e-49 | 9.647132e-47 |
| MsG0380011640.01 | MsG0680034842.01 | 0.830468 | 2.887616e-55 | 3.044768e-52 |
| MsG0380011640.01 | MsG0780036752.01 | 0.809089 | 2.248428e-50 | 1.307872e-47 |
| MsG0380011640.01 | MsG0880041846.01 | 0.803673 | 3.116214e-49 | 1.575381e-46 |
| MsG0380011640.01 | MsG0880041896.01 | 0.862806 | 3.902827e-64 | 1.157987e-60 |
| MsG0380011640.01 | MsG0880044041.01 | 0.862905 | 3.638276e-64 | 1.083077e-60 |
| MsG0280006591.01 | MsG0380011640.01 | 0.832736 | 7.971859e-56 | 8.989825e-53 |
| MsG0280008909.01 | MsG0380011640.01 | 0.823246 | 1.535842e-53 | 1.315216e-50 |
| MsG0280009404.01 | MsG0380011640.01 | 0.804519 | 2.077613e-49 | 1.073416e-46 |
| MsG0280009514.01 | MsG0380011640.01 | 0.807563 | 4.754995e-50 | 2.656983e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011640.01.T01 | MTR_3g007660 | 90.394 | 406 | 14 | 1 | 1 | 381 | 1 | 406 | 0.0 | 733 |
| MsG0380011640.01.T01 | MTR_8g046245 | 36.613 | 437 | 191 | 16 | 1 | 377 | 1 | 411 | 6.05e-51 | 176 |
| MsG0380011640.01.T01 | MTR_5g087470 | 36.735 | 98 | 60 | 2 | 11 | 108 | 4 | 99 | 3.18e-13 | 69.7 |
| MsG0380011640.01.T01 | MTR_5g087450 | 30.597 | 134 | 72 | 5 | 19 | 142 | 13 | 135 | 3.31e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011640.01.T01 | AT5G04890 | 43.820 | 89 | 49 | 1 | 20 | 108 | 16 | 103 | 4.28e-18 | 85.1 |
| MsG0380011640.01.T01 | AT2G27140 | 32.787 | 122 | 79 | 3 | 17 | 138 | 11 | 129 | 7.99e-14 | 70.9 |
| MsG0380011640.01.T01 | AT3G10680 | 32.692 | 104 | 69 | 1 | 4 | 107 | 7 | 109 | 2.57e-12 | 68.6 |
Find 70 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCAACTTGTGATTTA+AGG | 0.135801 | 3:+2922892 | None:intergenic |
| AAAGCCTTTAGTTGCAAATA+TGG | 0.210552 | 3:-2922178 | MsG0380011640.01.T01:CDS |
| CTTCAAGGCAAGTTTGAAAA+TGG | 0.223575 | 3:-2922951 | MsG0380011640.01.T01:CDS |
| AAAGTTTCATACACAGGATT+TGG | 0.240469 | 3:+2923876 | None:intergenic |
| TTGGTTCCCTTGGGTGTTCT+AGG | 0.258214 | 3:+2922846 | None:intergenic |
| ACCTTCTTGTCTCTAATTAT+AGG | 0.272544 | 3:+2922786 | None:intergenic |
| CTCCATTAATCCTTAGTGTT+CGG | 0.276081 | 3:+2923054 | None:intergenic |
| CCCTTGGGTGTTCTAGGACT+TGG | 0.288101 | 3:+2922852 | None:intergenic |
| TCCATTAATCCTTAGTGTTC+GGG | 0.297124 | 3:+2923055 | None:intergenic |
| TTTCTTCACGTTCACCTTCC+TGG | 0.299907 | 3:-2923813 | MsG0380011640.01.T01:intron |
| AAGTTTCATACACAGGATTT+GGG | 0.304860 | 3:+2923877 | None:intergenic |
| TCCCGAACACTAAGGATTAA+TGG | 0.308064 | 3:-2923056 | MsG0380011640.01.T01:CDS |
| CTCAAGTTGTCAAGAGAATA+GGG | 0.320215 | 3:-2922224 | MsG0380011640.01.T01:CDS |
| TGGAGGCTTTGAAGGAATAT+TGG | 0.320768 | 3:+2922827 | None:intergenic |
| CAGGATATGATTGGTCAAAT+AGG | 0.333759 | 3:+2923000 | None:intergenic |
| TTTAGAAGGAAAAGAAATAA+AGG | 0.334192 | 3:-2922400 | MsG0380011640.01.T01:CDS |
| TTTGACTTGGAAAAGTATCT+TGG | 0.347158 | 3:+2922694 | None:intergenic |
| TGAAGGAATATTGGTTCCCT+TGG | 0.376353 | 3:+2922836 | None:intergenic |
| AACAAGTTGAAGGAACAAAA+AGG | 0.378553 | 3:-2922720 | MsG0380011640.01.T01:CDS |
| GCTAGAAGAGGTAAACTTGT+AGG | 0.382807 | 3:+2922113 | None:intergenic |
| CCTTCAATTCTGACTTGGCT+TGG | 0.384214 | 3:+2923853 | None:intergenic |
| CCAAGCCAAGTCAGAATTGA+AGG | 0.386552 | 3:-2923853 | MsG0380011640.01.T01:CDS |
| ACTCTAGTTGGAGGCTTTGA+AGG | 0.393913 | 3:+2922819 | None:intergenic |
| TGTTTCAACTTGTGATTTAA+GGG | 0.399467 | 3:+2922893 | None:intergenic |
| TCTCAAGTTGTCAAGAGAAT+AGG | 0.415456 | 3:-2922225 | MsG0380011640.01.T01:CDS |
| AACCCTGTCACAATATTACT+TGG | 0.426130 | 3:+2922753 | None:intergenic |
| GAAGGAATATTGGTTCCCTT+GGG | 0.429823 | 3:+2922837 | None:intergenic |
| TGCTCCAAAAGATGCAAAGA+AGG | 0.439958 | 3:-2922343 | MsG0380011640.01.T01:CDS |
| TCTCCAAGTAATATTGTGAC+AGG | 0.442725 | 3:-2922756 | MsG0380011640.01.T01:CDS |
| GAGGATAAATATCAAATTTG+TGG | 0.447215 | 3:-2923084 | MsG0380011640.01.T01:CDS |
| TTGACTTGGAAAAGTATCTT+GGG | 0.454151 | 3:+2922695 | None:intergenic |
| AAGCCTTTAGTTGCAAATAT+GGG | 0.459552 | 3:-2922177 | MsG0380011640.01.T01:CDS |
| GGTTCTTCTAGTACTCTAGT+TGG | 0.460763 | 3:+2922807 | None:intergenic |
| AGGATAAATATCAAATTTGT+GGG | 0.471872 | 3:-2923083 | MsG0380011640.01.T01:CDS |
| GCAAGAAAAGAGTCATCAAA+AGG | 0.472949 | 3:-2922378 | MsG0380011640.01.T01:CDS |
| TAGACCTCAAAATGTTTATG+AGG | 0.473198 | 3:-2922628 | MsG0380011640.01.T01:CDS |
| AAAAGATGCAAAGAAGGAAA+AGG | 0.477137 | 3:-2922337 | MsG0380011640.01.T01:CDS |
| GCACCCATATTTGCAACTAA+AGG | 0.477234 | 3:+2922174 | None:intergenic |
| TGAGGTCTAGATTCTACAAA+GGG | 0.477686 | 3:+2922642 | None:intergenic |
| TCTTCTAGTACTCTAGTTGG+AGG | 0.480814 | 3:+2922810 | None:intergenic |
| TTTCTGGAACAGGATATGAT+TGG | 0.485095 | 3:+2922991 | None:intergenic |
| TCAACTTGTGATTTAAGGGA+TGG | 0.486917 | 3:+2922897 | None:intergenic |
| TGAAAAGTATACAAAAGAGA+AGG | 0.489401 | 3:-2922277 | MsG0380011640.01.T01:CDS |
| TGTGAGGTGGAGAAACTTCA+AGG | 0.500541 | 3:-2922966 | MsG0380011640.01.T01:CDS |
| AACTACTTGGTAGCAACAAA+TGG | 0.500941 | 3:-2923025 | MsG0380011640.01.T01:CDS |
| ATTCTAGTAATTGTTGCACT+TGG | 0.506438 | 3:-2922147 | MsG0380011640.01.T01:CDS |
| CACTAAGGATTAATGGAGAA+AGG | 0.511754 | 3:-2923049 | MsG0380011640.01.T01:CDS |
| ACAATATTACTTGGAGATGA+AGG | 0.514944 | 3:+2922762 | None:intergenic |
| TTTCCAAGTCAAAGTCCTAA+GGG | 0.518428 | 3:-2922684 | MsG0380011640.01.T01:CDS |
| AAATGACTTGAACAAGTTGA+AGG | 0.526624 | 3:-2922730 | MsG0380011640.01.T01:CDS |
| CAACTTGTGATTTAAGGGAT+GGG | 0.528671 | 3:+2922898 | None:intergenic |
| ACCTATAATTAGAGACAAGA+AGG | 0.529275 | 3:-2922787 | MsG0380011640.01.T01:CDS |
| AATGGAGAAAGGCAACTACT+TGG | 0.540238 | 3:-2923038 | MsG0380011640.01.T01:CDS |
| TGGGACTCTCCCGAACACTA+AGG | 0.543028 | 3:-2923064 | MsG0380011640.01.T01:CDS |
| CAAAGCAAAGAGGTATAAGA+AGG | 0.543303 | 3:-2922301 | MsG0380011640.01.T01:CDS |
| GAAGGGAATCTTCAAAGAAG+TGG | 0.544582 | 3:-2922259 | MsG0380011640.01.T01:CDS |
| TTTCCCTTAGGACTTTGACT+TGG | 0.546496 | 3:+2922681 | None:intergenic |
| GAAAAGTATACAAAAGAGAA+GGG | 0.549687 | 3:-2922276 | MsG0380011640.01.T01:CDS |
| GCTTGGAAAGTTTCATACAC+AGG | 0.566062 | 3:+2923870 | None:intergenic |
| TCATACACAGGATTTGGGGA+AGG | 0.574199 | 3:+2923882 | None:intergenic |
| TTGAGGTCTAGATTCTACAA+AGG | 0.598222 | 3:+2922641 | None:intergenic |
| GCCAAGTCCTAGAACACCCA+AGG | 0.612732 | 3:-2922853 | MsG0380011640.01.T01:CDS |
| TCAAGTTGTCAAGAGAATAG+GGG | 0.639104 | 3:-2922223 | MsG0380011640.01.T01:CDS |
| CTACAATTGACAAAGCAAAG+AGG | 0.640484 | 3:-2922311 | MsG0380011640.01.T01:CDS |
| CTCCAAGTAATATTGTGACA+GGG | 0.641452 | 3:-2922755 | MsG0380011640.01.T01:CDS |
| AGTTTCATACACAGGATTTG+GGG | 0.655568 | 3:+2923878 | None:intergenic |
| GTTGTCAAGAGAATAGGGGA+AGG | 0.658130 | 3:-2922219 | MsG0380011640.01.T01:CDS |
| TGTTCCAGAAAATTGTGAGG+TGG | 0.660896 | 3:-2922979 | MsG0380011640.01.T01:CDS |
| TCCTGTTCCAGAAAATTGTG+AGG | 0.672952 | 3:-2922982 | MsG0380011640.01.T01:CDS |
| CCAAGTCCTAGAACACCCAA+GGG | 0.690447 | 3:-2922852 | MsG0380011640.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACTTATTAGTCTT+TGG | + | Chr3:2922295-2922314 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAGAGGAAAAT+AGG | - | Chr3:2923462-2923481 | MsG0380011640.01.T01:intron | 20.0% |
| !! | AGGATAAATATCAAATTTGT+GGG | - | Chr3:2922942-2922961 | MsG0380011640.01.T01:CDS | 20.0% |
| !! | CTTTAAATTCTACCTAATAT+TGG | - | Chr3:2922263-2922282 | MsG0380011640.01.T01:CDS | 20.0% |
| !! | TTTAGAAGGAAAAGAAATAA+AGG | - | Chr3:2923625-2923644 | MsG0380011640.01.T01:intron | 20.0% |
| !!! | TTTGATTTGTTTTTTGTTCT+AGG | - | Chr3:2922328-2922347 | MsG0380011640.01.T01:CDS | 20.0% |
| ! | AAATGTGATCCTTTCTAATA+TGG | + | Chr3:2922366-2922385 | None:intergenic | 25.0% |
| ! | AAATTCTACCTAATATTGGA+GGG | - | Chr3:2922267-2922286 | MsG0380011640.01.T01:CDS | 25.0% |
| ! | AATTAAAAAACAATTGCACG+AGG | - | Chr3:2923505-2923524 | MsG0380011640.01.T01:intron | 25.0% |
| ! | GAGGATAAATATCAAATTTG+TGG | - | Chr3:2922941-2922960 | MsG0380011640.01.T01:CDS | 25.0% |
| ! | TAAATTCTACCTAATATTGG+AGG | - | Chr3:2922266-2922285 | MsG0380011640.01.T01:CDS | 25.0% |
| ! | TGTTTCAACTTGTGATTTAA+GGG | + | Chr3:2923135-2923154 | None:intergenic | 25.0% |
| ! | TTGTTTCAACTTGTGATTTA+AGG | + | Chr3:2923136-2923155 | None:intergenic | 25.0% |
| !! | CTTTTACAAAAAGGATCAAA+GGG | + | Chr3:2922742-2922761 | None:intergenic | 25.0% |
| !! | GAAAAGTATACAAAAGAGAA+GGG | - | Chr3:2923749-2923768 | MsG0380011640.01.T01:intron | 25.0% |
| !! | TCTTTTACAAAAAGGATCAA+AGG | + | Chr3:2922743-2922762 | None:intergenic | 25.0% |
| !! | TGAAAAGTATACAAAAGAGA+AGG | - | Chr3:2923748-2923767 | MsG0380011640.01.T01:intron | 25.0% |
| !! | TGATGATGAAAAAATTCAAG+AGG | - | Chr3:2923454-2923473 | MsG0380011640.01.T01:intron | 25.0% |
| !! | TTTTCCTCATAAACATTTTG+AGG | + | Chr3:2923404-2923423 | None:intergenic | 25.0% |
| !! | TTTTTCATCATCAATTGCTT+GGG | + | Chr3:2923447-2923466 | None:intergenic | 25.0% |
| !!! | TTTTTTCATCATCAATTGCT+TGG | + | Chr3:2923448-2923467 | None:intergenic | 25.0% |
| AAAAACAAAAAATACGCACC+AGG | + | Chr3:2922233-2922252 | None:intergenic | 30.0% | |
| AAAAGATGCAAAGAAGGAAA+AGG | - | Chr3:2923688-2923707 | MsG0380011640.01.T01:intron | 30.0% | |
| AAAGCCTTTAGTTGCAAATA+TGG | - | Chr3:2923847-2923866 | MsG0380011640.01.T01:CDS | 30.0% | |
| AAAGTTTCATACACAGGATT+TGG | + | Chr3:2922152-2922171 | None:intergenic | 30.0% | |
| AAGCCTTTAGTTGCAAATAT+GGG | - | Chr3:2923848-2923867 | MsG0380011640.01.T01:CDS | 30.0% | |
| AAGTTTCATACACAGGATTT+GGG | + | Chr3:2922151-2922170 | None:intergenic | 30.0% | |
| AATTCTACCTAATATTGGAG+GGG | - | Chr3:2922268-2922287 | MsG0380011640.01.T01:CDS | 30.0% | |
| ACAATATTACTTGGAGATGA+AGG | + | Chr3:2923266-2923285 | None:intergenic | 30.0% | |
| ACCTATAATTAGAGACAAGA+AGG | - | Chr3:2923238-2923257 | MsG0380011640.01.T01:intron | 30.0% | |
| ACCTTCTTGTCTCTAATTAT+AGG | + | Chr3:2923242-2923261 | None:intergenic | 30.0% | |
| ATTCTAGTAATTGTTGCACT+TGG | - | Chr3:2923878-2923897 | MsG0380011640.01.T01:CDS | 30.0% | |
| TAGACCTCAAAATGTTTATG+AGG | - | Chr3:2923397-2923416 | MsG0380011640.01.T01:intron | 30.0% | |
| ! | AAAGCTTTCAATTTTCCCTT+AGG | + | Chr3:2923359-2923378 | None:intergenic | 30.0% |
| ! | AAATGACTTGAACAAGTTGA+AGG | - | Chr3:2923295-2923314 | MsG0380011640.01.T01:intron | 30.0% |
| ! | AACAAGTTGAAGGAACAAAA+AGG | - | Chr3:2923305-2923324 | MsG0380011640.01.T01:intron | 30.0% |
| ! | ATTTTCCTTCAATTCTGACT+TGG | + | Chr3:2922180-2922199 | None:intergenic | 30.0% |
| ! | CCTACTTGTCTTTTACAAAA+AGG | + | Chr3:2922751-2922770 | None:intergenic | 30.0% |
| ! | CCTTTTTGTAAAAGACAAGT+AGG | - | Chr3:2922748-2922767 | MsG0380011640.01.T01:CDS | 30.0% |
| ! | TTTTCCTTCTTTGCATCTTT+TGG | + | Chr3:2923689-2923708 | None:intergenic | 30.0% |
| !! | GATCACAATACGTTTTTAGA+AGG | - | Chr3:2923611-2923630 | MsG0380011640.01.T01:intron | 30.0% |
| !! | TGATTTGGTTGTATTGACTT+GGG | - | Chr3:2922495-2922514 | MsG0380011640.01.T01:CDS | 30.0% |
| !! | TGTTCTGCAAGGTTTTATAA+AGG | - | Chr3:2922917-2922936 | MsG0380011640.01.T01:CDS | 30.0% |
| !! | TTGACTTGGAAAAGTATCTT+GGG | + | Chr3:2923333-2923352 | None:intergenic | 30.0% |
| !! | TTGATTTGGTTGTATTGACT+TGG | - | Chr3:2922494-2922513 | MsG0380011640.01.T01:CDS | 30.0% |
| !! | TTTGACTTGGAAAAGTATCT+TGG | + | Chr3:2923334-2923353 | None:intergenic | 30.0% |
| !!! | ACTTGGCACAATTTTTTCTT+TGG | + | Chr3:2923159-2923178 | None:intergenic | 30.0% |
| AACCCTGTCACAATATTACT+TGG | + | Chr3:2923275-2923294 | None:intergenic | 35.0% | |
| AGTTTCATACACAGGATTTG+GGG | + | Chr3:2922150-2922169 | None:intergenic | 35.0% | |
| ATTCTCCTCGATGTCAATTT+GGG | - | Chr3:2922557-2922576 | MsG0380011640.01.T01:CDS | 35.0% | |
| CAACTTGTGATTTAAGGGAT+GGG | + | Chr3:2923130-2923149 | None:intergenic | 35.0% | |
| CACTAAGGATTAATGGAGAA+AGG | - | Chr3:2922976-2922995 | MsG0380011640.01.T01:CDS | 35.0% | |
| CTACAATTGACAAAGCAAAG+AGG | - | Chr3:2923714-2923733 | MsG0380011640.01.T01:intron | 35.0% | |
| CTCCAAGTAATATTGTGACA+GGG | - | Chr3:2923270-2923289 | MsG0380011640.01.T01:intron | 35.0% | |
| CTCCATTAATCCTTAGTGTT+CGG | + | Chr3:2922974-2922993 | None:intergenic | 35.0% | |
| CTTCAAGGCAAGTTTGAAAA+TGG | - | Chr3:2923074-2923093 | MsG0380011640.01.T01:CDS | 35.0% | |
| GCAAGAAAAGAGTCATCAAA+AGG | - | Chr3:2923647-2923666 | MsG0380011640.01.T01:intron | 35.0% | |
| TCAACTTGTGATTTAAGGGA+TGG | + | Chr3:2923131-2923150 | None:intergenic | 35.0% | |
| TCCATTAATCCTTAGTGTTC+GGG | + | Chr3:2922973-2922992 | None:intergenic | 35.0% | |
| TCTCCAAGTAATATTGTGAC+AGG | - | Chr3:2923269-2923288 | MsG0380011640.01.T01:intron | 35.0% | |
| TGAGGTCTAGATTCTACAAA+GGG | + | Chr3:2923386-2923405 | None:intergenic | 35.0% | |
| TGTCTTAAGAAAACCCACTT+GGG | - | Chr3:2922471-2922490 | MsG0380011640.01.T01:CDS | 35.0% | |
| TGTGATCCTTTCTAATATGG+AGG | + | Chr3:2922363-2922382 | None:intergenic | 35.0% | |
| TTGAGGTCTAGATTCTACAA+AGG | + | Chr3:2923387-2923406 | None:intergenic | 35.0% | |
| TTGTCTTAAGAAAACCCACT+TGG | - | Chr3:2922470-2922489 | MsG0380011640.01.T01:CDS | 35.0% | |
| TTTCCAAGTCAAAGTCCTAA+GGG | - | Chr3:2923341-2923360 | MsG0380011640.01.T01:intron | 35.0% | |
| ! | AACTACTTGGTAGCAACAAA+TGG | - | Chr3:2923000-2923019 | MsG0380011640.01.T01:CDS | 35.0% |
| ! | ATTGCTTGGGATTTTGCTTT+TGG | + | Chr3:2923434-2923453 | None:intergenic | 35.0% |
| ! | CAAAGCAAAGAGGTATAAGA+AGG | - | Chr3:2923724-2923743 | MsG0380011640.01.T01:intron | 35.0% |
| ! | CAGGATATGATTGGTCAAAT+AGG | + | Chr3:2923028-2923047 | None:intergenic | 35.0% |
| ! | CTCAAGTTGTCAAGAGAATA+GGG | - | Chr3:2923801-2923820 | MsG0380011640.01.T01:intron | 35.0% |
| ! | TCAAGTTGTCAAGAGAATAG+GGG | - | Chr3:2923802-2923821 | MsG0380011640.01.T01:intron | 35.0% |
| ! | TCTCAAGTTGTCAAGAGAAT+AGG | - | Chr3:2923800-2923819 | MsG0380011640.01.T01:intron | 35.0% |
| ! | TTTTCCAAGTCAAAGTCCTA+AGG | - | Chr3:2923340-2923359 | MsG0380011640.01.T01:intron | 35.0% |
| !! | TGCAAGGTTTTATAAAGGAG+AGG | - | Chr3:2922922-2922941 | MsG0380011640.01.T01:CDS | 35.0% |
| !! | TTTCTGGAACAGGATATGAT+TGG | + | Chr3:2923037-2923056 | None:intergenic | 35.0% |
| !!! | TTAAGGGATGGGAACTTTTT+TGG | + | Chr3:2923119-2923138 | None:intergenic | 35.0% |
| AATGGAGAAAGGCAACTACT+TGG | - | Chr3:2922987-2923006 | MsG0380011640.01.T01:CDS | 40.0% | |
| ACAAAAAATACGCACCAGGA+AGG | + | Chr3:2922229-2922248 | None:intergenic | 40.0% | |
| ACAACCAAATCAACCCAAGT+GGG | + | Chr3:2922487-2922506 | None:intergenic | 40.0% | |
| GAAGGGAATCTTCAAAGAAG+TGG | - | Chr3:2923766-2923785 | MsG0380011640.01.T01:intron | 40.0% | |
| GATTCTCCTCGATGTCAATT+TGG | - | Chr3:2922556-2922575 | MsG0380011640.01.T01:CDS | 40.0% | |
| GCACCCATATTTGCAACTAA+AGG | + | Chr3:2923854-2923873 | None:intergenic | 40.0% | |
| GCTAGAAGAGGTAAACTTGT+AGG | + | Chr3:2923915-2923934 | None:intergenic | 40.0% | |
| GCTTGGAAAGTTTCATACAC+AGG | + | Chr3:2922158-2922177 | None:intergenic | 40.0% | |
| GGTTCTTCTAGTACTCTAGT+TGG | + | Chr3:2923221-2923240 | None:intergenic | 40.0% | |
| TACAACCAAATCAACCCAAG+TGG | + | Chr3:2922488-2922507 | None:intergenic | 40.0% | |
| TCCCGAACACTAAGGATTAA+TGG | - | Chr3:2922969-2922988 | MsG0380011640.01.T01:CDS | 40.0% | |
| TCCTGTTCCAGAAAATTGTG+AGG | - | Chr3:2923043-2923062 | MsG0380011640.01.T01:CDS | 40.0% | |
| TCTTCTAGTACTCTAGTTGG+AGG | + | Chr3:2923218-2923237 | None:intergenic | 40.0% | |
| TGCACTCCTCCATATTAGAA+AGG | - | Chr3:2922354-2922373 | MsG0380011640.01.T01:CDS | 40.0% | |
| TGCTCCAAAAGATGCAAAGA+AGG | - | Chr3:2923682-2923701 | MsG0380011640.01.T01:intron | 40.0% | |
| TGTTCCAGAAAATTGTGAGG+TGG | - | Chr3:2923046-2923065 | MsG0380011640.01.T01:CDS | 40.0% | |
| TTTCCCTTAGGACTTTGACT+TGG | + | Chr3:2923347-2923366 | None:intergenic | 40.0% | |
| ! | TGAGAGTGTACTCATTCTCA+AGG | - | Chr3:2922523-2922542 | MsG0380011640.01.T01:CDS | 40.0% |
| ! | TTCTCCACCTCACAATTTTC+TGG | + | Chr3:2923053-2923072 | None:intergenic | 40.0% |
| !! | AAAACCCACTTGGGTTGATT+TGG | - | Chr3:2922480-2922499 | MsG0380011640.01.T01:CDS | 40.0% |
| !! | GAAGGAATATTGGTTCCCTT+GGG | + | Chr3:2923191-2923210 | None:intergenic | 40.0% |
| !! | TGAAGGAATATTGGTTCCCT+TGG | + | Chr3:2923192-2923211 | None:intergenic | 40.0% |
| !! | TGGAGGCTTTGAAGGAATAT+TGG | + | Chr3:2923201-2923220 | None:intergenic | 40.0% |
| !!! | ACCTCACAATTTTCTGGAAC+AGG | + | Chr3:2923047-2923066 | None:intergenic | 40.0% |
| !!! | GAAGGTTTTGTTCTAGAGGT+AGG | + | Chr3:2922128-2922147 | None:intergenic | 40.0% |
| CCAAGCCAAGTCAGAATTGA+AGG | - | Chr3:2922172-2922191 | MsG0380011640.01.T01:CDS | 45.0% | |
| CTTCTCTCTCATGTTCTGCA+AGG | - | Chr3:2922906-2922925 | MsG0380011640.01.T01:CDS | 45.0% | |
| CTTTGGACCCCTCCAATATT+AGG | + | Chr3:2922278-2922297 | None:intergenic | 45.0% | |
| GAGAATGAGTACACTCTCAC+AGG | + | Chr3:2922522-2922541 | None:intergenic | 45.0% | |
| GTTGTCAAGAGAATAGGGGA+AGG | - | Chr3:2923806-2923825 | MsG0380011640.01.T01:intron | 45.0% | |
| TATCGCCCAAATTGACATCG+AGG | + | Chr3:2922565-2922584 | None:intergenic | 45.0% | |
| TCATACACAGGATTTGGGGA+AGG | + | Chr3:2922146-2922165 | None:intergenic | 45.0% | |
| TGTGAGGTGGAGAAACTTCA+AGG | - | Chr3:2923059-2923078 | MsG0380011640.01.T01:CDS | 45.0% | |
| TTTCTTCACGTTCACCTTCC+TGG | - | Chr3:2922212-2922231 | MsG0380011640.01.T01:CDS | 45.0% | |
| ! | ACTCTAGTTGGAGGCTTTGA+AGG | + | Chr3:2923209-2923228 | None:intergenic | 45.0% |
| !! | CCTTCAATTCTGACTTGGCT+TGG | + | Chr3:2922175-2922194 | None:intergenic | 45.0% |
| !!! | TGGGGAAGGTTTTGTTCTAG+AGG | + | Chr3:2922132-2922151 | None:intergenic | 45.0% |
| CCAAGTCCTAGAACACCCAA+GGG | - | Chr3:2923173-2923192 | MsG0380011640.01.T01:intron | 50.0% | |
| TTGGTTCCCTTGGGTGTTCT+AGG | + | Chr3:2923182-2923201 | None:intergenic | 50.0% | |
| GCCAAGTCCTAGAACACCCA+AGG | - | Chr3:2923172-2923191 | MsG0380011640.01.T01:intron | 55.0% | |
| TGGGACTCTCCCGAACACTA+AGG | - | Chr3:2922961-2922980 | MsG0380011640.01.T01:CDS | 55.0% | |
| !! | CCCTTGGGTGTTCTAGGACT+TGG | + | Chr3:2923176-2923195 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 2922104 | 2923943 | 2922104 | ID=MsG0380011640.01;Name=MsG0380011640.01 |
| Chr3 | mRNA | 2922104 | 2923943 | 2922104 | ID=MsG0380011640.01.T01;Parent=MsG0380011640.01;Name=MsG0380011640.01.T01;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|381 |
| Chr3 | exon | 2923814 | 2923943 | 2923814 | ID=MsG0380011640.01.T01:exon:1608;Parent=MsG0380011640.01.T01 |
| Chr3 | exon | 2922104 | 2923119 | 2922104 | ID=MsG0380011640.01.T01:exon:1607;Parent=MsG0380011640.01.T01 |
| Chr3 | CDS | 2923814 | 2923943 | 2923814 | ID=MsG0380011640.01.T01:cds;Parent=MsG0380011640.01.T01 |
| Chr3 | CDS | 2922104 | 2923119 | 2922104 | ID=MsG0380011640.01.T01:cds;Parent=MsG0380011640.01.T01 |
| Gene Sequence |
| Protein sequence |
