AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023941.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023941.01.T01 MTR_8g105340 92.857 56 4 0 94 149 215 270 3.86e-31 112
MsG0480023941.01.T01 MTR_8g105340 92.857 56 4 0 94 149 224 279 4.67e-31 112
MsG0480023941.01.T01 MTR_1g032450 89.286 56 6 0 94 149 222 277 3.77e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023941.01.T01 AT3G57490 76.744 43 10 0 93 135 219 261 5.61e-18 78.6
MsG0480023941.01.T01 AT2G41840 72.917 48 10 1 93 140 228 272 9.05e-18 77.8
MsG0480023941.01.T01 AT1G58684 68.085 47 15 0 93 139 227 273 2.32e-17 77.0
MsG0480023941.01.T01 AT1G58983 68.085 47 15 0 93 139 227 273 2.32e-17 77.0
MsG0480023941.01.T01 AT1G59359 68.085 47 15 0 93 139 227 273 2.32e-17 77.0
MsG0480023941.01.T01 AT1G58380 69.565 46 14 0 94 139 228 273 2.66e-17 76.6

Find 72 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTGAAACTAGCTTCTT+TGG 0.268815 4:-91510112 None:intergenic
CTTGTCTCCTTCCAGAATTC+AGG 0.269661 4:-91509792 None:intergenic
CCTCCGCCCTTTCTTCTTCA+AGG 0.277743 4:-91509881 None:intergenic
GATTATTATAATTGCATGTT+TGG 0.282030 4:-91510250 None:intergenic
ATGCTGGCTTACATTGGTTT+TGG 0.297467 4:+91510217 MsG0480023941.01.T01:three_prime_UTR
TAATTGCATGTTTGGAATCA+TGG 0.308568 4:-91510242 None:intergenic
AAATGCAGGAAACTATAAAT+TGG 0.317729 4:-91510013 None:intergenic
ATACTCTTGGAATGGAGATT+TGG 0.351395 4:-91509820 None:intergenic
GAGGCTTGAAGTTGAAGTTT+TGG 0.374425 4:+91509900 MsG0480023941.01.T01:exon
TGGTGGAGATCGTGGTGTTT+TGG 0.408980 4:+91508114 MsG0480023941.01.T01:CDS
ACCACAACAAAAGCCTGAAC+CGG 0.413519 4:-91508425 None:intergenic
CAGCCCGGTTGTTTCTGAAC+CGG 0.429014 4:-91508392 None:intergenic
CTGGTCAGAGAACCCGGTTC+AGG 0.432767 4:+91508412 MsG0480023941.01.T01:CDS
CCAACAGATCAGTATACTCT+TGG 0.439572 4:-91509833 None:intergenic
AAGATGCCAATCTGCATGTA+TGG 0.444321 4:+91510176 MsG0480023941.01.T01:three_prime_UTR
CTTTGATCCTTGAAGAAGAA+AGG 0.447076 4:+91509874 MsG0480023941.01.T01:CDS
CGTGGTGGTCGTCGTAGAGC+TGG 0.451382 4:+91508195 MsG0480023941.01.T01:CDS
TGGTGGTGACAGAGGGGTCG+TGG 0.452580 4:+91508153 MsG0480023941.01.T01:CDS
CAGAGGGGTCGTGGTGGACG+TGG 0.460937 4:+91508162 MsG0480023941.01.T01:CDS
TCTTTGGCAAGGTGAGGATA+AGG 0.461791 4:-91510096 None:intergenic
AGTTATAATTACTAGTTCCT+AGG 0.463300 4:-91509955 None:intergenic
GTTGTTTCCTTCTGTACTGA+AGG 0.472765 4:+91509990 MsG0480023941.01.T01:three_prime_UTR
GAGGTCGTGGTGGTGACAGA+GGG 0.486279 4:+91508146 MsG0480023941.01.T01:CDS
CAAAGCCTTAGCAGTTGGCT+TGG 0.489306 4:-91509856 None:intergenic
AGACGCGAAGAAGAAGAGAA+TGG 0.501412 4:+91508222 MsG0480023941.01.T01:CDS
CTGAATCCATACATGCAGAT+TGG 0.514597 4:-91510182 None:intergenic
CATGCCGGTTCAGAAACAAC+CGG 0.523059 4:+91508388 MsG0480023941.01.T01:CDS
GACTGTTTGATGAAAACCTA+CGG 0.523763 4:+91509759 MsG0480023941.01.T01:CDS
TCAGAGTTGTGCAAATATGC+TGG 0.524704 4:+91510201 MsG0480023941.01.T01:three_prime_UTR
AGGATCAAAGCCTTAGCAGT+TGG 0.528734 4:-91509861 None:intergenic
ACCGGGTTCTCTGACCAGCC+CGG 0.529959 4:-91508407 None:intergenic
TTGGCAGTGTTTGGAGGTCG+TGG 0.535375 4:+91508133 MsG0480023941.01.T01:CDS
TTTCATCAAACAGTCAAAAG+TGG 0.538001 4:-91509751 None:intergenic
TTTGATCCTTGAAGAAGAAA+GGG 0.538675 4:+91509875 MsG0480023941.01.T01:CDS
GGACGTGGTGACAGAGGTCG+TGG 0.539300 4:+91508177 MsG0480023941.01.T01:CDS
ACCGGGCTGGTCAGAGAACC+CGG 0.541534 4:+91508406 MsG0480023941.01.T01:CDS
CCCTCGTGGGTCCACTCTCA+AGG 0.543835 4:+91508349 MsG0480023941.01.T01:CDS
CCAAGAGTATACTGATCTGT+TGG 0.544918 4:+91509833 MsG0480023941.01.T01:CDS
GACGCGAAGAAGAAGAGAAT+GGG 0.545973 4:+91508223 MsG0480023941.01.T01:CDS
GCAAATATGCTGGCTTACAT+TGG 0.559428 4:+91510211 MsG0480023941.01.T01:three_prime_UTR
CGGTTCAGAAACAACCGGGC+TGG 0.560174 4:+91508393 MsG0480023941.01.T01:CDS
GTTGGCCAAGCCAACTGCTA+AGG 0.561111 4:+91509851 MsG0480023941.01.T01:CDS
TGGGTCCACTCTCAAGGATG+AGG 0.561981 4:+91508355 MsG0480023941.01.T01:CDS
GGAGGTCGTGGTGGTGACAG+AGG 0.563145 4:+91508145 MsG0480023941.01.T01:CDS
ATGGTGTGTTTAAACATCCT+AGG 0.564783 4:+91509938 MsG0480023941.01.T01:three_prime_UTR
CCACAACAAAAGCCTGAACC+GGG 0.569056 4:-91508424 None:intergenic
CTAGCTTCTTTGGCAAGGTG+AGG 0.574116 4:-91510102 None:intergenic
TGAAACTAGCTTCTTTGGCA+AGG 0.585993 4:-91510107 None:intergenic
TCTAACACCTGAATTCTGGA+AGG 0.587404 4:+91509785 MsG0480023941.01.T01:CDS
CTGAATTCTGGAAGGAGACA+AGG 0.587850 4:+91509793 MsG0480023941.01.T01:CDS
AAATTGGCCTTCAGTACAGA+AGG 0.589342 4:-91509997 None:intergenic
AGATCAGTATACTCTTGGAA+TGG 0.591366 4:-91509828 None:intergenic
CATCACCTCATCCTTGAGAG+TGG 0.594189 4:-91508360 None:intergenic
TTCAGGTGTTAGAAAACCGT+AGG 0.600291 4:-91509775 None:intergenic
TGGTGACAGAGGGGTCGTGG+TGG 0.606617 4:+91508156 MsG0480023941.01.T01:CDS
GGTGGTCGTCGTAGAGCTGG+AGG 0.613793 4:+91508198 MsG0480023941.01.T01:CDS
CGTGGTGGACGTGGTGACAG+AGG 0.616506 4:+91508171 MsG0480023941.01.T01:CDS
CCTTGAAGAAGAAAGGGCGG+AGG 0.634716 4:+91509881 MsG0480023941.01.T01:CDS
TCAAATCATCGATACCCTCG+TGG 0.638508 4:+91508335 MsG0480023941.01.T01:CDS
ATCAACAACATGGCTGAACG+TGG 0.644114 4:+91508094 None:intergenic
GCTGAACGTGGTGGAGATCG+TGG 0.646255 4:+91508106 MsG0480023941.01.T01:CDS
TGAGGTGATGAAGATCATGC+CGG 0.655740 4:+91508373 MsG0480023941.01.T01:CDS
ATGCCGGTTCAGAAACAACC+GGG 0.662385 4:+91508389 MsG0480023941.01.T01:CDS
AGGTCGTGGTGGTGACAGAG+GGG 0.668621 4:+91508147 MsG0480023941.01.T01:CDS
AACAACATGGCTGAACGTGG+TGG 0.670923 4:+91508097 None:intergenic
GATCCTTGAAGAAGAAAGGG+CGG 0.672666 4:+91509878 MsG0480023941.01.T01:CDS
CAAATCATCGATACCCTCGT+GGG 0.682658 4:+91508336 MsG0480023941.01.T01:CDS
GCAGTGTTTGGAGGTCGTGG+TGG 0.685392 4:+91508136 MsG0480023941.01.T01:CDS
CCTTGAGAGTGGACCCACGA+GGG 0.707871 4:-91508349 None:intergenic
TCCTTGAGAGTGGACCCACG+AGG 0.721311 4:-91508350 None:intergenic
CGTGGTGACAGAGGTCGTGG+TGG 0.723864 4:+91508180 MsG0480023941.01.T01:CDS
TGGTGATAACAATGTCACGT+TGG 0.767829 4:+91508451 MsG0480023941.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATTAAAATGAGAAAA+TGG - Chr4:91509364-91509383 None:intergenic 15.0%
!! TGTTTATTCAAAATAACAAT+AGG - Chr4:91509412-91509431 None:intergenic 15.0%
!! CTAGTTGTTTGAATTTAATT+TGG + Chr4:91508800-91508819 MsG0480023941.01.T01:intron 20.0%
!! GATAAATCATAAATTAGAGA+AGG - Chr4:91509705-91509724 None:intergenic 20.0%
!!! TATTTTTCAACTTTGATGTT+TGG + Chr4:91510038-91510057 MsG0480023941.01.T01:three_prime_UTR 20.0%
! AAAATGCACATACATAAGTT+TGG - Chr4:91509523-91509542 None:intergenic 25.0%
! AAATGCAGGAAACTATAAAT+TGG - Chr4:91510016-91510035 None:intergenic 25.0%
! AATGAATCAAAATGCAAGTT+TGG - Chr4:91509450-91509469 None:intergenic 25.0%
! ACTTTCAGTTGAACATAAAT+TGG - Chr4:91509201-91509220 None:intergenic 25.0%
! ACTTTCAGTTGACATAAATT+TGG - Chr4:91508977-91508996 None:intergenic 25.0%
! AGTTATAATTACTAGTTCCT+AGG - Chr4:91509958-91509977 None:intergenic 25.0%
! AGTTGAAAAATACAAAATGC+AGG - Chr4:91510030-91510049 None:intergenic 25.0%
! GAATGTGAATTGTTTAAAGA+AGG + Chr4:91509496-91509515 MsG0480023941.01.T01:intron 25.0%
! GTTAAACTGTACTATTTATC+TGG + Chr4:91509270-91509289 MsG0480023941.01.T01:intron 25.0%
! TGTTAGAAGTTTATTGTTGT+TGG + Chr4:91509147-91509166 MsG0480023941.01.T01:intron 25.0%
! TTCATAACAGACAAATTCTT+AGG - Chr4:91509607-91509626 None:intergenic 25.0%
!! AACACTTTGTTGTATTGTTA+TGG + Chr4:91508857-91508876 MsG0480023941.01.T01:intron 25.0%
!! TTATGTATGTGCATTTTGTA+TGG + Chr4:91509526-91509545 MsG0480023941.01.T01:intron 25.0%
!!! ATGGTTTCTTTATTTTAGAC+GGG + Chr4:91508895-91508914 MsG0480023941.01.T01:intron 25.0%
!!! CATGGTTTCTTTATTTTAGA+CGG + Chr4:91508894-91508913 MsG0480023941.01.T01:intron 25.0%
!!! GAATTGCAGTTTTTTTTAGT+TGG + Chr4:91509624-91509643 MsG0480023941.01.T01:intron 25.0%
ATTGATCATATTATCCCTGT+TGG + Chr4:91509467-91509486 MsG0480023941.01.T01:intron 30.0%
CTGTTAGAGTTTATTGTTGT+TGG + Chr4:91508925-91508944 MsG0480023941.01.T01:intron 30.0%
GAAACCATGTATCATAGTAT+TGG - Chr4:91508883-91508902 None:intergenic 30.0%
GATCATGTTCAAATTGATTG+TGG + Chr4:91509019-91509038 MsG0480023941.01.T01:intron 30.0%
TTTCATCAAACAGTCAAAAG+TGG - Chr4:91509754-91509773 None:intergenic 30.0%
TTTGATCCTTGAAGAAGAAA+GGG + Chr4:91509875-91509894 MsG0480023941.01.T01:CDS 30.0%
! TAATTGCATGTTTGGAATCA+TGG - Chr4:91510245-91510264 None:intergenic 30.0%
!!! AGTTGAAGTTTTGGTTTTGT+TGG + Chr4:91509909-91509928 MsG0480023941.01.T01:three_prime_UTR 30.0%
AAACCTTGACGAAATTCCAA+GGG - Chr4:91508751-91508770 None:intergenic 35.0%
AGATCAGTATACTCTTGGAA+TGG - Chr4:91509831-91509850 None:intergenic 35.0%
ATACTCTTGGAATGGAGATT+TGG - Chr4:91509823-91509842 None:intergenic 35.0%
ATGATTTGATGCTCCTGATT+GGG - Chr4:91508324-91508343 None:intergenic 35.0%
ATGGCCAATACTATGATACA+TGG + Chr4:91508876-91508895 MsG0480023941.01.T01:intron 35.0%
ATGGTGTGTTTAAACATCCT+AGG + Chr4:91509938-91509957 MsG0480023941.01.T01:three_prime_UTR 35.0%
ATTCTGTGAACAATATTCCG+TGG + Chr4:91509061-91509080 MsG0480023941.01.T01:intron 35.0%
CAAAGAATATGTCCATTGCA+TGG - Chr4:91509581-91509600 None:intergenic 35.0%
CTTTGATCCTTGAAGAAGAA+AGG + Chr4:91509874-91509893 MsG0480023941.01.T01:CDS 35.0%
GAATGAGATAGATCTGTTCA+AGG - Chr4:91508298-91508317 None:intergenic 35.0%
GACTGTTTGATGAAAACCTA+CGG + Chr4:91509759-91509778 MsG0480023941.01.T01:CDS 35.0%
GTTATGGCAATACTATGACA+TGG + Chr4:91509098-91509117 MsG0480023941.01.T01:intron 35.0%
TCACATTCACAATACCAACA+GGG - Chr4:91509484-91509503 None:intergenic 35.0%
TTAGTTGGCAACATTTGACT+GGG + Chr4:91509639-91509658 MsG0480023941.01.T01:intron 35.0%
TTCACATTCACAATACCAAC+AGG - Chr4:91509485-91509504 None:intergenic 35.0%
TTTAGTTGGCAACATTTGAC+TGG + Chr4:91509638-91509657 MsG0480023941.01.T01:intron 35.0%
! GAAACTGAAACTAGCTTCTT+TGG - Chr4:91510115-91510134 None:intergenic 35.0%
! GCTGTGACATTTCATTTTAC+AGG + Chr4:91509728-91509747 MsG0480023941.01.T01:intron 35.0%
! GTTTTCTAACACCTGAATTC+TGG + Chr4:91509781-91509800 MsG0480023941.01.T01:CDS 35.0%
! TTTTGTGTAGAACCATGCAA+TGG + Chr4:91509566-91509585 MsG0480023941.01.T01:intron 35.0%
!! GAGTTTGCTAAATTGACAGA+AGG + Chr4:91508834-91508853 MsG0480023941.01.T01:intron 35.0%
!! TGTCTTGTTGTTTCATAGTG+CGG + Chr4:91509383-91509402 MsG0480023941.01.T01:intron 35.0%
!!! TTGGTTTTGTTGGATGATCA+TGG + Chr4:91509919-91509938 MsG0480023941.01.T01:three_prime_UTR 35.0%
AAACCCTTGGAATTTCGTCA+AGG + Chr4:91508745-91508764 MsG0480023941.01.T01:intron 40.0%
AACCGATGATTCATAGACCA+CGG - Chr4:91509081-91509100 None:intergenic 40.0%
AAGATGCCAATCTGCATGTA+TGG + Chr4:91510176-91510195 MsG0480023941.01.T01:three_prime_UTR 40.0%
ACTGTTCCTTGTAAGGTTAC+TGG + Chr4:91508592-91508611 MsG0480023941.01.T01:intron 40.0%
CACTTTCCAGTAACCTTACA+AGG - Chr4:91508601-91508620 None:intergenic 40.0%
CCAACAGATCAGTATACTCT+TGG - Chr4:91509836-91509855 None:intergenic 40.0%
CTGAATCCATACATGCAGAT+TGG - Chr4:91510185-91510204 None:intergenic 40.0%
CTGGTTGAACAATAATTCCG+TGG + Chr4:91509289-91509308 MsG0480023941.01.T01:intron 40.0%
GAAACCTTGACGAAATTCCA+AGG - Chr4:91508752-91508771 None:intergenic 40.0%
GATAGATCTGTTCAAGGCTT+CGG - Chr4:91508292-91508311 None:intergenic 40.0%
GATGATTTGATGCTCCTGAT+TGG - Chr4:91508325-91508344 None:intergenic 40.0%
TAACCTTACAAGGAACAGTG+TGG - Chr4:91508591-91508610 None:intergenic 40.0%
TATCTCATTCTCTCCCAATC+AGG + Chr4:91508308-91508327 MsG0480023941.01.T01:intron 40.0%
TCAGAGTTGTGCAAATATGC+TGG + Chr4:91510201-91510220 MsG0480023941.01.T01:three_prime_UTR 40.0%
TCTAACACCTGAATTCTGGA+AGG + Chr4:91509785-91509804 MsG0480023941.01.T01:CDS 40.0%
TGGTGATAACAATGTCACGT+TGG + Chr4:91508451-91508470 MsG0480023941.01.T01:CDS 40.0%
TGTAAGGTTACTGGAAAGTG+TGG + Chr4:91508601-91508620 MsG0480023941.01.T01:intron 40.0%
TGTCGATGATTCATAGACCA+CGG - Chr4:91509309-91509328 None:intergenic 40.0%
TTCAGGTGTTAGAAAACCGT+AGG - Chr4:91509778-91509797 None:intergenic 40.0%
TTCCGTGGTCTATGAATCAT+CGG + Chr4:91509076-91509095 MsG0480023941.01.T01:intron 40.0%
TTCGTATGGTTTATGCTCCT+CGG + Chr4:91508634-91508653 MsG0480023941.01.T01:intron 40.0%
TTCTGGTATTGTTGCTGCTA+GGG + Chr4:91508658-91508677 MsG0480023941.01.T01:intron 40.0%
TTGACGAAATTCCAAGGGTT+TGG - Chr4:91508746-91508765 None:intergenic 40.0%
! AAGAAGGTTTTGCAGTTTGC+TGG + Chr4:91508685-91508704 MsG0480023941.01.T01:intron 40.0%
! ATGATGTTTTCACTTCCTCC+CGG + Chr4:91508713-91508732 MsG0480023941.01.T01:intron 40.0%
! CCAAGAGTATACTGATCTGT+TGG + Chr4:91509833-91509852 MsG0480023941.01.T01:CDS 40.0%
! GAGGCTTGAAGTTGAAGTTT+TGG + Chr4:91509900-91509919 MsG0480023941.01.T01:exon 40.0%
! GGTCTATGAATCATCGGTTA+TGG + Chr4:91509082-91509101 MsG0480023941.01.T01:intron 40.0%
! GTGGTTCTGTTATGTTCGTA+TGG + Chr4:91508620-91508639 MsG0480023941.01.T01:intron 40.0%
! GTTGTTTCCTTCTGTACTGA+AGG + Chr4:91509990-91510009 MsG0480023941.01.T01:three_prime_UTR 40.0%
! TAACAATGTCACGTTGGTCT+TGG + Chr4:91508457-91508476 MsG0480023941.01.T01:intron 40.0%
! TGAAACTAGCTTCTTTGGCA+AGG - Chr4:91510110-91510129 None:intergenic 40.0%
!! AAATTGGCCTTCAGTACAGA+AGG - Chr4:91510000-91510019 None:intergenic 40.0%
!! GAGGTATTGGGGTAAAAGAT+CGG + Chr4:91508559-91508578 MsG0480023941.01.T01:intron 40.0%
!! GCAAATATGCTGGCTTACAT+TGG + Chr4:91510211-91510230 MsG0480023941.01.T01:three_prime_UTR 40.0%
!!! ATGCTGGCTTACATTGGTTT+TGG + Chr4:91510217-91510236 MsG0480023941.01.T01:three_prime_UTR 40.0%
ACCACAACAAAAGCCTGAAC+CGG - Chr4:91508428-91508447 None:intergenic 45.0%
AGACGCGAAGAAGAAGAGAA+TGG + Chr4:91508222-91508241 MsG0480023941.01.T01:CDS 45.0%
AGGATCAAAGCCTTAGCAGT+TGG - Chr4:91509864-91509883 None:intergenic 45.0%
CAAATCATCGATACCCTCGT+GGG + Chr4:91508336-91508355 MsG0480023941.01.T01:CDS 45.0%
CTTGTCTCCTTCCAGAATTC+AGG - Chr4:91509795-91509814 None:intergenic 45.0%
GACGCGAAGAAGAAGAGAAT+GGG + Chr4:91508223-91508242 MsG0480023941.01.T01:CDS 45.0%
GATCCTTGAAGAAGAAAGGG+CGG + Chr4:91509878-91509897 MsG0480023941.01.T01:CDS 45.0%
GTTCTGGTATTGTTGCTGCT+AGG + Chr4:91508657-91508676 MsG0480023941.01.T01:intron 45.0%
TCAAATCATCGATACCCTCG+TGG + Chr4:91508335-91508354 MsG0480023941.01.T01:CDS 45.0%
TCGTATGGTTTATGCTCCTC+GGG + Chr4:91508635-91508654 MsG0480023941.01.T01:intron 45.0%
TCTTTGGCAAGGTGAGGATA+AGG - Chr4:91510099-91510118 None:intergenic 45.0%
TGAGGTGATGAAGATCATGC+CGG + Chr4:91508373-91508392 MsG0480023941.01.T01:CDS 45.0%
! ATTCCAGTGAGGAGAGGTAT+TGG + Chr4:91508546-91508565 MsG0480023941.01.T01:intron 45.0%
! CTGAATTCTGGAAGGAGACA+AGG + Chr4:91509793-91509812 MsG0480023941.01.T01:CDS 45.0%
! TGATGTTTTCACTTCCTCCC+GGG + Chr4:91508714-91508733 MsG0480023941.01.T01:intron 45.0%
!! CTTGTTGTTTCATAGTGCGG+TGG + Chr4:91509386-91509405 MsG0480023941.01.T01:intron 45.0%
!! TTCCAGTGAGGAGAGGTATT+GGG + Chr4:91508547-91508566 MsG0480023941.01.T01:intron 45.0%
!! TTGCTGCTAGGGTTCTAAGA+AGG + Chr4:91508669-91508688 MsG0480023941.01.T01:intron 45.0%
AGCAACAATACCAGAACCCG+AGG - Chr4:91508654-91508673 None:intergenic 50.0%
AGCTGAGTGTGATTCCAGTG+AGG + Chr4:91508535-91508554 MsG0480023941.01.T01:intron 50.0%
AGTGTGATTCCAGTGAGGAG+AGG + Chr4:91508540-91508559 MsG0480023941.01.T01:intron 50.0%
CAAAGCCTTAGCAGTTGGCT+TGG - Chr4:91509859-91509878 None:intergenic 50.0%
CATCACCTCATCCTTGAGAG+TGG - Chr4:91508363-91508382 None:intergenic 50.0%
CCACAACAAAAGCCTGAACC+GGG - Chr4:91508427-91508446 None:intergenic 50.0%
CTAGCTTCTTTGGCAAGGTG+AGG - Chr4:91510105-91510124 None:intergenic 50.0%
GAAGTAGCTACTGCGATTCG+TGG + Chr4:91508496-91508515 MsG0480023941.01.T01:intron 50.0%
GAATCACACTCAGCTTAGCC+AGG - Chr4:91508530-91508549 None:intergenic 50.0%
GCACCACACTGTTCCTTGTA+AGG + Chr4:91508585-91508604 MsG0480023941.01.T01:intron 50.0%
! GATGTTTTCACTTCCTCCCG+GGG + Chr4:91508715-91508734 MsG0480023941.01.T01:intron 50.0%
! TGGTGGAGATCGTGGTGTTT+TGG + Chr4:91508114-91508133 MsG0480023941.01.T01:CDS 50.0%
!! ATGCCGGTTCAGAAACAACC+GGG + Chr4:91508389-91508408 MsG0480023941.01.T01:CDS 50.0%
!! CAGGCTTTTGTTGTGGTGGT+TGG + Chr4:91508431-91508450 MsG0480023941.01.T01:CDS 50.0%
!! CATGCCGGTTCAGAAACAAC+CGG + Chr4:91508388-91508407 MsG0480023941.01.T01:CDS 50.0%
!! CGATTCGTGGTGCTATATCC+TGG + Chr4:91508509-91508528 MsG0480023941.01.T01:intron 50.0%
!! GGTTCAGGCTTTTGTTGTGG+TGG + Chr4:91508427-91508446 MsG0480023941.01.T01:CDS 50.0%
!! TCCAGTGAGGAGAGGTATTG+GGG + Chr4:91508548-91508567 MsG0480023941.01.T01:intron 50.0%
!!! CGTGGTGTTTTGGCAGTGTT+TGG + Chr4:91508124-91508143 MsG0480023941.01.T01:CDS 50.0%
!!! GGTGTTTTGGCAGTGTTTGG+AGG + Chr4:91508127-91508146 MsG0480023941.01.T01:CDS 50.0%
ACCCCAATACCTCTCCTCAC+TGG - Chr4:91508552-91508571 None:intergenic 55.0%
AGACGACCTAGCTTGGTCAC+TGG - Chr4:91508251-91508270 None:intergenic 55.0%
CAAGCTAGGTCGTCTCGTGA+AGG + Chr4:91508256-91508275 MsG0480023941.01.T01:intron 55.0%
CCTCCGCCCTTTCTTCTTCA+AGG - Chr4:91509884-91509903 None:intergenic 55.0%
CCTTGAAGAAGAAAGGGCGG+AGG + Chr4:91509881-91509900 MsG0480023941.01.T01:CDS 55.0%
CTAGGTCGTCTCGTGAAGGA+AGG + Chr4:91508260-91508279 MsG0480023941.01.T01:intron 55.0%
CTTCACGAGACGACCTAGCT+TGG - Chr4:91508258-91508277 None:intergenic 55.0%
GGTTTATGCTCCTCGGGTTC+TGG + Chr4:91508641-91508660 MsG0480023941.01.T01:intron 55.0%
GTTGGCCAAGCCAACTGCTA+AGG + Chr4:91509851-91509870 MsG0480023941.01.T01:CDS 55.0%
TGGGTCCACTCTCAAGGATG+AGG + Chr4:91508355-91508374 MsG0480023941.01.T01:CDS 55.0%
TGGGTTCCAGTGACCAAGCT+AGG + Chr4:91508242-91508261 MsG0480023941.01.T01:intron 55.0%
TTGGCAGTGTTTGGAGGTCG+TGG + Chr4:91508133-91508152 MsG0480023941.01.T01:CDS 55.0%
! CCCGGTTCAGGCTTTTGTTG+TGG + Chr4:91508424-91508443 MsG0480023941.01.T01:CDS 55.0%
!! CAAGGGTTTGGTGTATCCCC+GGG - Chr4:91508734-91508753 None:intergenic 55.0%
!! CAGCCCGGTTGTTTCTGAAC+CGG - Chr4:91508395-91508414 None:intergenic 55.0%
!! CCAAGGGTTTGGTGTATCCC+CGG - Chr4:91508735-91508754 None:intergenic 55.0%
CCGGGGATACACCAAACCCT+TGG + Chr4:91508732-91508751 MsG0480023941.01.T01:intron 60.0%
CCTTGAGAGTGGACCCACGA+GGG - Chr4:91508352-91508371 None:intergenic 60.0%
CGGTTCAGAAACAACCGGGC+TGG + Chr4:91508393-91508412 MsG0480023941.01.T01:CDS 60.0%
CTGGTCAGAGAACCCGGTTC+AGG + Chr4:91508412-91508431 MsG0480023941.01.T01:CDS 60.0%
GCAGTGTTTGGAGGTCGTGG+TGG + Chr4:91508136-91508155 MsG0480023941.01.T01:CDS 60.0%
TCCTTGAGAGTGGACCCACG+AGG - Chr4:91508353-91508372 None:intergenic 60.0%
! AGGTCGTGGTGGTGACAGAG+GGG + Chr4:91508147-91508166 MsG0480023941.01.T01:CDS 60.0%
! GAGGTCGTGGTGGTGACAGA+GGG + Chr4:91508146-91508165 MsG0480023941.01.T01:CDS 60.0%
! GCTGAACGTGGTGGAGATCG+TGG + Chr4:91508106-91508125 MsG0480023941.01.T01:CDS 60.0%
ACCGGGTTCTCTGACCAGCC+CGG - Chr4:91508410-91508429 None:intergenic 65.0%
CCCTCGTGGGTCCACTCTCA+AGG + Chr4:91508349-91508368 MsG0480023941.01.T01:CDS 65.0%
CGTGGTGACAGAGGTCGTGG+TGG + Chr4:91508180-91508199 MsG0480023941.01.T01:CDS 65.0%
CGTGGTGGTCGTCGTAGAGC+TGG + Chr4:91508195-91508214 MsG0480023941.01.T01:CDS 65.0%
GGACGTGGTGACAGAGGTCG+TGG + Chr4:91508177-91508196 MsG0480023941.01.T01:CDS 65.0%
GGTGGTCGTCGTAGAGCTGG+AGG + Chr4:91508198-91508217 MsG0480023941.01.T01:CDS 65.0%
TGGTGACAGAGGGGTCGTGG+TGG + Chr4:91508156-91508175 MsG0480023941.01.T01:CDS 65.0%
! GGAGGTCGTGGTGGTGACAG+AGG + Chr4:91508145-91508164 MsG0480023941.01.T01:CDS 65.0%
! TGGTGGTGACAGAGGGGTCG+TGG + Chr4:91508153-91508172 MsG0480023941.01.T01:CDS 65.0%
!! ACCGGGCTGGTCAGAGAACC+CGG + Chr4:91508406-91508425 MsG0480023941.01.T01:CDS 65.0%
!! CGTGGTGGACGTGGTGACAG+AGG + Chr4:91508171-91508190 MsG0480023941.01.T01:CDS 65.0%
!! GGGTTTGGTGTATCCCCGGG+AGG - Chr4:91508731-91508750 None:intergenic 65.0%
!! CAGAGGGGTCGTGGTGGACG+TGG + Chr4:91508162-91508181 MsG0480023941.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 91508103 91510271 91508103 ID=MsG0480023941.01;Name=MsG0480023941.01
Chr4 mRNA 91508103 91510271 91508103 ID=MsG0480023941.01.T01;Parent=MsG0480023941.01;Name=MsG0480023941.01.T01;_AED=0.36;_eAED=0.43;_QI=0|0|0.33|1|1|1|3|363|149
Chr4 exon 91508103 91508250 91508103 ID=MsG0480023941.01.T01:exon:5154;Parent=MsG0480023941.01.T01
Chr4 exon 91508330 91508472 91508330 ID=MsG0480023941.01.T01:exon:5155;Parent=MsG0480023941.01.T01
Chr4 exon 91509750 91510271 91509750 ID=MsG0480023941.01.T01:exon:5156;Parent=MsG0480023941.01.T01
Chr4 CDS 91508103 91508250 91508103 ID=MsG0480023941.01.T01:cds;Parent=MsG0480023941.01.T01
Chr4 CDS 91508330 91508472 91508330 ID=MsG0480023941.01.T01:cds;Parent=MsG0480023941.01.T01
Chr4 CDS 91509750 91509908 91509750 ID=MsG0480023941.01.T01:cds;Parent=MsG0480023941.01.T01
Chr4 three_prime_UTR 91509909 91510271 91509909 ID=MsG0480023941.01.T01:three_prime_utr;Parent=MsG0480023941.01.T01
Gene Sequence

>MsG0480023941.01.T01

ATGGCTGAACGTGGTGGAGATCGTGGTGTTTTGGCAGTGTTTGGAGGTCGTGGTGGTGACAGAGGGGTCGTGGTGGACGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCTGGAGGAAGACGCGAAGAAGAAGAGAATGGGTTCCAGAGCATCAAATCATCGATACCCTCGTGGGTCCACTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAACAACCGGGCTGGTCAGAGAACCCGGTTCAGGCTTTTGTTGTGGTGGTTGGTGATAACAATGTCACGTTGGCCACTTTTGACTGTTTGATGAAAACCTACGGTTTTCTAACACCTGAATTCTGGAAGGAGACAAGGTTCTCCAAATCTCCATTCCAAGAGTATACTGATCTGTTGGCCAAGCCAACTGCTAAGGCTTTGATCCTTGAAGAAGAAAGGGCGGAGGCTTGA
Protein sequence

>MsG0480023941.01.T01

MAERGGDRGVLAVFGGRGGDRGVVVDVVTEVVVVVVELEEDAKKKRMGSRASNHRYPRGSTLKDEVMKIMPVQKQPGWSENPVQAFVVVVGDNNVTLATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERAEA*