AlfalfaGEDB | MsG0180000118.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000118.01

KEGG: K02985
GO: GO:0003723 GO:0003735 GO:0005840 GO:0006412 GO:0015935
PFAM: PF00189 PF07650

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000118.01.T01	XP_003590123.1	99.582	239	1	0	1	239	1	239	6.38E-173	485

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000118.01.T01	Q9FJA6	88.412	233	27	0	1	233	1	233	4.57E-152	426

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000118.01.T01	B7FH64	99.582	239	1	0	1	239	1	239	3.05e-173	485

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048922.01	MsG0180000118.01	0.803215	3.877328e-49	1.937288e-46
MsG0080048933.01	MsG0180000118.01	0.829240	5.749108e-55	5.850489e-52
MsG0180000096.01	MsG0180000118.01	0.906906	8.988181e-81	1.555287e-76
MsG0180000118.01	MsG0180001169.01	0.874045	9.172831e-68	4.068865e-64
MsG0180000118.01	MsG0180001829.01	0.923679	1.930828e-89	7.832390e-85
MsG0180000118.01	MsG0180001837.01	0.843939	1.028872e-58	1.635465e-55
MsG0180000118.01	MsG0180002738.01	0.835996	1.211909e-56	1.507050e-53
MsG0180000118.01	MsG0180003585.01	0.831553	1.564178e-55	1.703312e-52
MsG0180000118.01	MsG0180003897.01	0.940222	3.371064e-100	3.635955e-95
MsG0180000118.01	MsG0180004064.01	0.826321	2.892740e-54	2.703768e-51
MsG0180000118.01	MsG0180004503.01	0.870253	1.677584e-66	6.482730e-63
MsG0180000118.01	MsG0180004829.01	0.919535	3.989641e-87	1.287265e-82
MsG0180000118.01	MsG0180005384.01	0.908335	1.912145e-81	3.533567e-77
MsG0180000118.01	MsG0180005573.01	0.840145	1.037313e-57	1.464313e-54
MsG0180000118.01	MsG0180005789.01	0.814361	1.602140e-51	1.072754e-48
MsG0180000118.01	MsG0280006301.01	0.839548	1.483879e-57	2.055927e-54
MsG0180000118.01	MsG0280006629.01	0.905080	6.262258e-80	9.966186e-76
MsG0180000118.01	MsG0280006747.01	0.925980	8.773872e-91	4.035670e-86
MsG0180000118.01	MsG0280006841.01	0.831745	1.402132e-55	1.535661e-52
MsG0180000118.01	MsG0280007055.01	0.946267	6.386342e-105	1.035443e-99
MsG0180000118.01	MsG0280007084.01	0.830471	2.882976e-55	3.040135e-52
MsG0180000118.01	MsG0280007606.01	0.800137	1.659726e-48	7.669291e-46
MsG0180000118.01	MsG0280007995.01	0.867263	1.556418e-65	5.399799e-62
MsG0180000118.01	MsG0280010203.01	0.824865	6.402822e-54	5.741878e-51
MsG0180000118.01	MsG0280010232.01	0.847417	1.172026e-59	2.081718e-56
MsG0180000118.01	MsG0280011308.01	0.824422	8.143450e-54	7.209268e-51
MsG0180000118.01	MsG0380014507.01	0.831255	1.851109e-55	1.997728e-52
MsG0180000118.01	MsG0380015446.01	0.870119	1.856965e-66	7.140443e-63
MsG0180000118.01	MsG0380015494.01	0.809938	1.477461e-50	8.790131e-48
MsG0180000118.01	MsG0380015766.01	0.854908	8.995896e-62	2.040470e-58
MsG0180000118.01	MsG0380015857.01	0.939300	1.601141e-99	1.630711e-94
MsG0180000118.01	MsG0380016607.01	0.836426	9.426371e-57	1.187500e-53
MsG0180000118.01	MsG0380016653.01	0.818900	1.539600e-52	1.167324e-49
MsG0180000118.01	MsG0380016678.01	0.874025	9.317899e-68	4.130223e-64
MsG0180000118.01	MsG0380016732.01	0.839557	1.476069e-57	2.045628e-54
MsG0180000118.01	MsG0380016744.01	0.902463	9.453187e-79	1.339923e-74
MsG0180000118.01	MsG0380016760.01	0.881916	1.612308e-70	9.623952e-67
MsG0180000118.01	MsG0480018164.01	0.921072	5.712247e-88	2.001414e-83
MsG0180000118.01	MsG0480019165.01	0.901016	4.103524e-78	5.436929e-74
MsG0180000118.01	MsG0480019632.01	0.833295	5.790886e-56	6.640285e-53
MsG0180000118.01	MsG0480020796.01	0.883622	3.838080e-71	2.452286e-67
MsG0180000118.01	MsG0480020911.01	0.887868	9.773065e-73	7.394791e-69
MsG0180000118.01	MsG0480021279.01	0.909756	4.004080e-82	7.908666e-78
MsG0180000118.01	MsG0480021417.01	0.922512	8.931045e-89	3.392697e-84
MsG0180000118.01	MsG0480022006.01	0.906162	1.992398e-80	3.331990e-76
MsG0180000118.01	MsG0480022041.01	0.860146	2.530982e-63	6.849864e-60
MsG0180000118.01	MsG0480022302.01	0.818749	1.666240e-52	1.257984e-49
MsG0180000118.01	MsG0480022363.01	0.833572	4.938988e-56	5.710412e-53
MsG0180000118.01	MsG0480022789.01	0.868120	8.268719e-66	2.957242e-62
MsG0180000118.01	MsG0480022955.01	0.869493	2.972266e-66	1.117870e-62
MsG0180000118.01	MsG0480023380.01	0.908572	1.476124e-81	2.754700e-77
MsG0180000118.01	MsG0480023774.01	0.929137	1.069787e-92	5.877411e-88
MsG0180000118.01	MsG0480023870.01	0.805920	1.057318e-49	5.663586e-47
MsG0180000118.01	MsG0480023931.01	0.881084	3.218929e-70	1.859801e-66
MsG0180000118.01	MsG0480023941.01	0.865499	5.650383e-65	1.842335e-61
MsG0180000118.01	MsG0480023970.01	0.809719	1.646867e-50	9.741839e-48
MsG0180000118.01	MsG0480023996.01	0.848382	6.353579e-60	1.163803e-56
MsG0180000118.01	MsG0580024059.01	0.854982	8.559998e-62	1.946515e-58
MsG0180000118.01	MsG0580024481.01	0.877547	5.758858e-69	2.906718e-65
MsG0180000118.01	MsG0580024540.01	0.882266	1.203233e-70	7.281254e-67
MsG0180000118.01	MsG0580024738.01	0.909422	5.794669e-82	1.126147e-77
MsG0180000118.01	MsG0580024894.01	0.856354	3.405286e-62	8.105455e-59
MsG0180000118.01	MsG0580025073.01	0.823430	1.390751e-53	1.197156e-50
MsG0180000118.01	MsG0580025750.01	0.843500	1.349170e-58	2.114945e-55
MsG0180000118.01	MsG0580029702.01	0.838172	3.366669e-57	4.472468e-54
MsG0180000118.01	MsG0580030073.01	0.837371	5.406540e-57	7.007974e-54
MsG0180000118.01	MsG0680031368.01	0.866086	3.687336e-65	1.227422e-61
MsG0180000118.01	MsG0680032459.01	0.805807	1.116937e-49	5.965585e-47
MsG0180000118.01	MsG0680035611.01	0.882780	7.817774e-71	4.826402e-67
MsG0180000118.01	MsG0780037290.01	0.859712	3.422241e-63	9.123267e-60
MsG0180000118.01	MsG0780038383.01	0.879004	1.774587e-69	9.466372e-66
MsG0180000118.01	MsG0780039937.01	0.854703	1.031753e-61	2.324510e-58
MsG0180000118.01	MsG0780041058.01	0.818871	1.563112e-52	1.184161e-49
MsG0180000118.01	MsG0780041153.01	0.833369	5.549121e-56	6.377523e-53
MsG0180000118.01	MsG0780041240.01	0.848714	5.139736e-60	9.517715e-57
MsG0180000118.01	MsG0780041244.01	0.802772	4.788209e-49	2.365597e-46
MsG0180000118.01	MsG0780041311.01	0.856713	2.671158e-62	6.432590e-59
MsG0180000118.01	MsG0780041522.01	0.868262	7.440549e-66	2.674532e-62
MsG0180000118.01	MsG0780041790.01	0.875568	2.780719e-68	1.304765e-64
MsG0180000118.01	MsG0880041941.01	0.863962	1.711020e-64	5.282824e-61
MsG0180000118.01	MsG0880042517.01	0.914761	1.310855e-84	3.312967e-80
MsG0180000118.01	MsG0880042896.01	0.813180	2.916733e-51	1.891273e-48
MsG0180000118.01	MsG0880043076.01	0.870957	9.848839e-67	3.903952e-63
MsG0180000118.01	MsG0880044204.01	0.836919	7.056678e-57	9.022070e-54
MsG0180000118.01	MsG0880045836.01	0.840652	7.641429e-58	1.095706e-54
MsG0180000118.01	MsG0880046220.01	0.886450	3.384960e-72	2.419147e-68
MsG0180000118.01	MsG0880046486.01	0.841801	3.812197e-58	5.664631e-55
MsG0180000118.01	MsG0880047779.01	0.816432	5.548170e-52	3.930427e-49

PPI

Gene1	Gene2	Type
MsG0180000118.01	MsG0180001829.01	PPI
MsG0180000118.01	MsG0180001829.01	PPI
MsG0180000118.01	MsG0780037928.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000118.01.T01	MTR_1g044660	99.582	239	1	0	1	239	1	239	7.73e-177	485
MsG0180000118.01.T01	MTR_1g023000	98.745	239	3	0	1	239	1	239	3.11e-176	484
MsG0180000118.01.T01	MTR_6g052140	94.538	238	8	1	1	238	1	233	5.09e-166	457
MsG0180000118.01.T01	MTR_6g052220	94.538	238	8	1	1	238	1	233	5.09e-166	457
MsG0180000118.01.T01	MTR_1g111450	86.383	235	31	1	1	234	1	235	5.35e-150	417

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000118.01.T01	AT5G35530	88.412	233	27	1	233	1	233	4.66e-153	426
MsG0180000118.01.T01	AT2G31610	88.987	227	25	1	227	1	227	3.97e-149	416
MsG0180000118.01.T01	AT3G53870	92.166	217	17	1	217	1	217	1.58e-148	414

Find 87 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGGAAACTTAAATCGTTTC+TGG	0.078444	1:-1690251	None:intergenic
GTAGGGTGTTCTTGGTATTA+AGG	0.259759	1:+1690658	MsG0180000118.01.T01:intron
TTAGGACCTTGCTTTCCTTT+AGG	0.279269	1:-1690704	None:intergenic
GGATGGATGGATGTTTATAT+AGG	0.304609	1:-1689711	None:intergenic
TAATACACGGGAGGAAATTA+TGG	0.314729	1:-1691018	None:intergenic
GCTATTCCGGTGTTGAGGTT+AGG	0.315077	1:+1690037	MsG0180000118.01.T01:CDS
CTTGCTGAAGATGGCTATTC+CGG	0.326131	1:+1690024	MsG0180000118.01.T01:CDS
TCCCCTGTTGTTAACCTTCT+CGG	0.326817	1:-1690295	None:intergenic
CGGTGTGTTGAGGTTTGTTA+TGG	0.332791	1:+1690392	MsG0180000118.01.T01:CDS
CATGTTTGCAGATTTAGCTT+GGG	0.336587	1:-1689813	None:intergenic
GACGTACTCTTCCTCCTCCT+TGG	0.347648	1:-1690762	None:intergenic
AAACCTCAACACACCGTAAC+AGG	0.355716	1:-1690385	None:intergenic
CTCATCTGGCCAACCTGTTA+AGG	0.357556	1:+1690506	MsG0180000118.01.T01:CDS
ATAGCCATCCTTGAACTTCA+TGG	0.360301	1:-1690478	None:intergenic
GAAACTGCAAACCCTAGTTT+TGG	0.367479	1:-1689746	None:intergenic
CTATTCCGGTGTTGAGGTTA+GGG	0.371348	1:+1690038	MsG0180000118.01.T01:CDS
GATGGATGGATGTTTATATA+GGG	0.381464	1:-1689710	None:intergenic
CCATGTTTGCAGATTTAGCT+TGG	0.385717	1:-1689814	None:intergenic
AACTGAGTATAACATTATCT+TGG	0.392338	1:-1690960	None:intergenic
CTAACCATTTCTCCAAAACT+AGG	0.397229	1:+1689734	MsG0180000118.01.T01:five_prime_UTR
GAGTCAATGTAATCCTTAAC+AGG	0.402767	1:-1690519	None:intergenic
ATCCTTGAACTTCATGGACT+TGG	0.424680	1:-1690472	None:intergenic
GTGTGAATGGTAACAATATC+AGG	0.428011	1:-1690737	None:intergenic
AGGTGAAGATTATGCTTGAC+TGG	0.432560	1:+1690678	MsG0180000118.01.T01:CDS
CTCCTCCTTGGGAGTGTGAA+TGG	0.434959	1:-1690750	None:intergenic
ACCAGAGAGCTTGCTGAAGA+TGG	0.438488	1:+1690015	MsG0180000118.01.T01:CDS
ACTCGTACCCAAGCTGTTCT+CGG	0.438888	1:+1690096	MsG0180000118.01.T01:CDS
GATGGCTATATGATCTCATC+TGG	0.452022	1:+1690492	MsG0180000118.01.T01:CDS
TCTCTTCGTTACAAGCTTCT+CGG	0.453319	1:+1690342	MsG0180000118.01.T01:CDS
ATGCCGAGAAGGTTAACAAC+AGG	0.456910	1:+1690292	MsG0180000118.01.T01:CDS
CAAACAACAGGGACTGGGAC+AGG	0.457728	1:-1690821	None:intergenic
AAGATAATGTTATACTCAGT+TGG	0.458948	1:+1690962	MsG0180000118.01.T01:three_prime_UTR
ACGTACTCTTCCTCCTCCTT+GGG	0.464887	1:-1690761	None:intergenic
GAGAAATGGTTAGGGATGGA+TGG	0.468403	1:-1689724	None:intergenic
TTGAGGTTTGTTATGGAAAG+TGG	0.475116	1:+1690399	MsG0180000118.01.T01:CDS
TCTGATTAGGTGAGAAGGGT+AGG	0.480405	1:+1690202	MsG0180000118.01.T01:intron
TTTGGAGAAATGGTTAGGGA+TGG	0.483044	1:-1689728	None:intergenic
AGGAGGAGGAAGAGTACGTC+AGG	0.486037	1:+1690765	MsG0180000118.01.T01:CDS
TATAGTTCAACACTGTTCTC+AGG	0.488325	1:-1690270	None:intergenic
GCCATCTTCAGCAAGCTCTC+TGG	0.491889	1:-1690016	None:intergenic
AGCCAAGTCCATGAAGTTCA+AGG	0.492737	1:+1690470	MsG0180000118.01.T01:CDS
TGTTATGGAAAGTGGTGCTA+AGG	0.499768	1:+1690407	MsG0180000118.01.T01:CDS
TAGACATGTTCTTCTCAGAC+AGG	0.500852	1:+1690548	MsG0180000118.01.T01:CDS
TTGTTGCAGTTCGTCGCTGA+CGG	0.501712	1:+1689961	MsG0180000118.01.T01:intron
ATGTTTGCAGATTTAGCTTG+GGG	0.508108	1:-1689812	None:intergenic
AAATTCTGATTAGGTGAGAA+GGG	0.508698	1:+1690198	MsG0180000118.01.T01:intron
CTACGAACCGAGAACAGCTT+GGG	0.520711	1:-1690103	None:intergenic
CCAAGCTAAATCTGCAAACA+TGG	0.522664	1:+1689814	MsG0180000118.01.T01:exon
GATGATGATCTCAGTGCGCA+TGG	0.527229	1:-1690067	None:intergenic
TCATTTGCAACAACAGCAGC+AGG	0.528096	1:-1690788	None:intergenic
TAACCATTTCTCCAAAACTA+GGG	0.529900	1:+1689735	MsG0180000118.01.T01:five_prime_UTR
TTTCTTCGCTGAATTGAATG+AGG	0.530015	1:+1689987	MsG0180000118.01.T01:CDS
AATGGTAACAATATCAGGTA+GGG	0.532486	1:-1690732	None:intergenic
TAAGATGTAAATATTAGATA+AGG	0.537093	1:-1691045	None:intergenic
ACTACGAACCGAGAACAGCT+TGG	0.552773	1:-1690104	None:intergenic
GCTGTTCGCAGAGCCTGTTA+CGG	0.553152	1:+1690372	MsG0180000118.01.T01:CDS
GAGCCTGTTACGGTGTGTTG+AGG	0.556363	1:+1690382	MsG0180000118.01.T01:CDS
ATGCTTGACTGGGATCCTAA+AGG	0.556783	1:+1690689	MsG0180000118.01.T01:CDS
GAAATTCTGATTAGGTGAGA+AGG	0.560918	1:+1690197	MsG0180000118.01.T01:intron
TGTTGTTGCAAATGATATTG+AGG	0.562213	1:+1690796	MsG0180000118.01.T01:CDS
GGATGTGAGGTTATTGTCAG+TGG	0.567678	1:+1690429	MsG0180000118.01.T01:CDS
TTTCTCAAACAACAGGGACT+GGG	0.568525	1:-1690826	None:intergenic
GTTATGGAAAGTGGTGCTAA+GGG	0.582081	1:+1690408	MsG0180000118.01.T01:CDS
GAATGGTAACAATATCAGGT+AGG	0.585408	1:-1690733	None:intergenic
AGATGGCTATTCCGGTGTTG+AGG	0.587442	1:+1690032	MsG0180000118.01.T01:CDS
CATTCACACTCCCAAGGAGG+AGG	0.589806	1:+1690751	MsG0180000118.01.T01:CDS
CAATGTAATCCTTAACAGGT+TGG	0.596885	1:-1690515	None:intergenic
TGGGATCCTAAAGGAAAGCA+AGG	0.601952	1:+1690698	MsG0180000118.01.T01:CDS
GGTGAAGATTATGCTTGACT+GGG	0.603451	1:+1690679	MsG0180000118.01.T01:CDS
AAACAACAGGGACTGGGACA+GGG	0.607283	1:-1690820	None:intergenic
GGATGGATGTTTATATAGGG+TGG	0.612338	1:-1689707	None:intergenic
TGTTGAACTATATGCCGAGA+AGG	0.615665	1:+1690281	MsG0180000118.01.T01:CDS
ATGGTAACAATATCAGGTAG+GGG	0.623679	1:-1690731	None:intergenic
TGTTACCATTCACACTCCCA+AGG	0.629341	1:+1690745	MsG0180000118.01.T01:CDS
AAGTCCATGAAGTTCAAGGA+TGG	0.640546	1:+1690474	MsG0180000118.01.T01:CDS
ATGATGATCTCAGTGCGCAT+GGG	0.667262	1:-1690066	None:intergenic
AAGTGGTGCTAAGGGATGTG+AGG	0.670962	1:+1690416	MsG0180000118.01.T01:CDS
CTTCGTTACAAGCTTCTCGG+AGG	0.671532	1:+1690345	MsG0180000118.01.T01:CDS
TGCCGAGAAGGTTAACAACA+GGG	0.674234	1:+1690293	MsG0180000118.01.T01:CDS
AAATCGTTTCTGGACTACTG+AGG	0.676412	1:-1690241	None:intergenic
AGATAAGGAACATAATACAC+GGG	0.677461	1:-1691030	None:intergenic
TAAGGAACATAATACACGGG+AGG	0.680426	1:-1691027	None:intergenic
AGTAACCCTAACCTCAACAC+CGG	0.681090	1:-1690043	None:intergenic
GCCGAGAAGGTTAACAACAG+GGG	0.682645	1:+1690294	MsG0180000118.01.T01:CDS
TGTTTGCAGATTTAGCTTGG+GGG	0.686534	1:-1689811	None:intergenic
TAGATAAGGAACATAATACA+CGG	0.690016	1:-1691031	None:intergenic
TACCATTCACACTCCCAAGG+AGG	0.690748	1:+1690748	MsG0180000118.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAGATGTAAATATTAGATA+AGG	-	Chr1:1691048-1691067	None:intergenic	15.0%
!!!	ATTATTACCTTTATTTTGTA+GGG	+	Chr1:1690641-1690660	MsG0180000118.01.T01:intron	15.0%
!!!	TGTTTTTATAGGAATTTAAA+TGG	+	Chr1:1690159-1690178	MsG0180000118.01.T01:intron	15.0%
!!	TGATTTATGAAATTCTGATT+AGG	+	Chr1:1690189-1690208	MsG0180000118.01.T01:intron	20.0%
!!!	GATTATTACCTTTATTTTGT+AGG	+	Chr1:1690640-1690659	MsG0180000118.01.T01:intron	20.0%
!	AACTGAGTATAACATTATCT+TGG	-	Chr1:1690963-1690982	None:intergenic	25.0%
!	AAGATAATGTTATACTCAGT+TGG	+	Chr1:1690962-1690981	MsG0180000118.01.T01:three_prime_UTR	25.0%
!	TAGATAAGGAACATAATACA+CGG	-	Chr1:1691034-1691053	None:intergenic	25.0%
!!	AAAACATTTTCTCAAACAAC+AGG	-	Chr1:1690836-1690855	None:intergenic	25.0%
!!	AAACATTTTCTCAAACAACA+GGG	-	Chr1:1690835-1690854	None:intergenic	25.0%
	AAACCAACATGGTTGTTATA+GGG	-	Chr1:1690586-1690605	None:intergenic	30.0%
	AAATTCTGATTAGGTGAGAA+GGG	+	Chr1:1690198-1690217	MsG0180000118.01.T01:intron	30.0%
	AAGAACACCCTACAAAATAA+AGG	-	Chr1:1690651-1690670	None:intergenic	30.0%
	AATAACAAACCAAACCAACA+TGG	-	Chr1:1690597-1690616	None:intergenic	30.0%
	AATGGTAACAATATCAGGTA+GGG	-	Chr1:1690735-1690754	None:intergenic	30.0%
	AGATAAGGAACATAATACAC+GGG	-	Chr1:1691033-1691052	None:intergenic	30.0%
	ATGGATGGATGTTTATATAG+GGG	-	Chr1:1689712-1689731	None:intergenic	30.0%
	CACTACTAATAGAGATGAAT+TGG	-	Chr1:1689894-1689913	None:intergenic	30.0%
	GATGGATGGATGTTTATATA+GGG	-	Chr1:1689713-1689732	None:intergenic	30.0%
	TAACCATTTCTCCAAAACTA+GGG	+	Chr1:1689735-1689754	MsG0180000118.01.T01:five_prime_UTR	30.0%
	TGTTGTTGCAAATGATATTG+AGG	+	Chr1:1690796-1690815	MsG0180000118.01.T01:CDS	30.0%
!	TGTCAGACTTTTGTAGTTTT+CGG	+	Chr1:1690896-1690915	MsG0180000118.01.T01:three_prime_UTR	30.0%
!!	GAGAAAATGTTTTGAGTGTA+TGG	+	Chr1:1690843-1690862	MsG0180000118.01.T01:exon	30.0%
!!!	TAGTTTTGGAGAAATGGTTA+GGG	-	Chr1:1689735-1689754	None:intergenic	30.0%
!!!	TTTATTTTGTAGGGTGTTCT+TGG	+	Chr1:1690650-1690669	MsG0180000118.01.T01:intron	30.0%
	ATGGTAACAATATCAGGTAG+GGG	-	Chr1:1690734-1690753	None:intergenic	35.0%
	CAAACCAACATGGTTGTTAT+AGG	-	Chr1:1690587-1690606	None:intergenic	35.0%
	CAATGTAATCCTTAACAGGT+TGG	-	Chr1:1690518-1690537	None:intergenic	35.0%
	CAGGAAACTTAAATCGTTTC+TGG	-	Chr1:1690254-1690273	None:intergenic	35.0%
	CTAACCATTTCTCCAAAACT+AGG	+	Chr1:1689734-1689753	MsG0180000118.01.T01:five_prime_UTR	35.0%
	GAAATTCTGATTAGGTGAGA+AGG	+	Chr1:1690197-1690216	MsG0180000118.01.T01:intron	35.0%
	GAATGGTAACAATATCAGGT+AGG	-	Chr1:1690736-1690755	None:intergenic	35.0%
	GAGTCAATGTAATCCTTAAC+AGG	-	Chr1:1690522-1690541	None:intergenic	35.0%
	GGATGGATGGATGTTTATAT+AGG	-	Chr1:1689714-1689733	None:intergenic	35.0%
	GTGTGAATGGTAACAATATC+AGG	-	Chr1:1690740-1690759	None:intergenic	35.0%
	TAATACACGGGAGGAAATTA+TGG	-	Chr1:1691021-1691040	None:intergenic	35.0%
	TATAGTTCAACACTGTTCTC+AGG	-	Chr1:1690273-1690292	None:intergenic	35.0%
	TTACCCTATAACAACCATGT+TGG	+	Chr1:1690580-1690599	MsG0180000118.01.T01:intron	35.0%
	TTTCTTCGCTGAATTGAATG+AGG	+	Chr1:1689987-1690006	MsG0180000118.01.T01:CDS	35.0%
!	CATGTTTGCAGATTTAGCTT+GGG	-	Chr1:1689816-1689835	None:intergenic	35.0%
!	CTATAACAACCATGTTGGTT+TGG	+	Chr1:1690585-1690604	MsG0180000118.01.T01:intron	35.0%
!!	ATGTTTGCAGATTTAGCTTG+GGG	-	Chr1:1689815-1689834	None:intergenic	35.0%
!!	TTGAGGTTTGTTATGGAAAG+TGG	+	Chr1:1690399-1690418	MsG0180000118.01.T01:CDS	35.0%
!!!	AAACCCTAGTTTTGGAGAAA+TGG	-	Chr1:1689741-1689760	None:intergenic	35.0%
!!!	CTAGTTTTGGAGAAATGGTT+AGG	-	Chr1:1689736-1689755	None:intergenic	35.0%
!!!	CTTTCGCTTTTTGCTCATTT+GGG	-	Chr1:1689843-1689862	None:intergenic	35.0%
	AAGTCCATGAAGTTCAAGGA+TGG	+	Chr1:1690474-1690493	MsG0180000118.01.T01:CDS	40.0%
	AGGTGAAGATTATGCTTGAC+TGG	+	Chr1:1690678-1690697	MsG0180000118.01.T01:CDS	40.0%
	ATAGCCATCCTTGAACTTCA+TGG	-	Chr1:1690481-1690500	None:intergenic	40.0%
	ATCCTTGAACTTCATGGACT+TGG	-	Chr1:1690475-1690494	None:intergenic	40.0%
	CCAAATGAGCAAAAAGCGAA+AGG	+	Chr1:1689841-1689860	MsG0180000118.01.T01:CDS	40.0%
	CCAAGCTAAATCTGCAAACA+TGG	+	Chr1:1689814-1689833	MsG0180000118.01.T01:exon	40.0%
	CCATGTTTGCAGATTTAGCT+TGG	-	Chr1:1689817-1689836	None:intergenic	40.0%
	GATGGCTATATGATCTCATC+TGG	+	Chr1:1690492-1690511	MsG0180000118.01.T01:CDS	40.0%
	GGTGAAGATTATGCTTGACT+GGG	+	Chr1:1690679-1690698	MsG0180000118.01.T01:CDS	40.0%
	TAAGGAACATAATACACGGG+AGG	-	Chr1:1691030-1691049	None:intergenic	40.0%
	TAGACATGTTCTTCTCAGAC+AGG	+	Chr1:1690548-1690567	MsG0180000118.01.T01:CDS	40.0%
	TCTCTTCGTTACAAGCTTCT+CGG	+	Chr1:1690342-1690361	MsG0180000118.01.T01:CDS	40.0%
	TGTTGAACTATATGCCGAGA+AGG	+	Chr1:1690281-1690300	MsG0180000118.01.T01:CDS	40.0%
	TTAGGACCTTGCTTTCCTTT+AGG	-	Chr1:1690707-1690726	None:intergenic	40.0%
	TTTCTCAAACAACAGGGACT+GGG	-	Chr1:1690829-1690848	None:intergenic	40.0%
	TTTGGAGAAATGGTTAGGGA+TGG	-	Chr1:1689731-1689750	None:intergenic	40.0%
!	AAATCGTTTCTGGACTACTG+AGG	-	Chr1:1690244-1690263	None:intergenic	40.0%
!	ATATCAGGTAGGGGAGTTTT+AGG	-	Chr1:1690725-1690744	None:intergenic	40.0%
!	GAAACTGCAAACCCTAGTTT+TGG	-	Chr1:1689749-1689768	None:intergenic	40.0%
!	GTAGGGTGTTCTTGGTATTA+AGG	+	Chr1:1690658-1690677	MsG0180000118.01.T01:intron	40.0%
!	GTTATGGAAAGTGGTGCTAA+GGG	+	Chr1:1690408-1690427	MsG0180000118.01.T01:CDS	40.0%
!	TGTTATGGAAAGTGGTGCTA+AGG	+	Chr1:1690407-1690426	MsG0180000118.01.T01:CDS	40.0%
!	TTTTCTCAAACAACAGGGAC+TGG	-	Chr1:1690830-1690849	None:intergenic	40.0%
!!	TGTTTGCAGATTTAGCTTGG+GGG	-	Chr1:1689814-1689833	None:intergenic	40.0%
!!!	CCTTTCGCTTTTTGCTCATT+TGG	-	Chr1:1689844-1689863	None:intergenic	40.0%
	AAACCTCAACACACCGTAAC+AGG	-	Chr1:1690388-1690407	None:intergenic	45.0%
	AGCCAAGTCCATGAAGTTCA+AGG	+	Chr1:1690470-1690489	MsG0180000118.01.T01:CDS	45.0%
	AGTAACCCTAACCTCAACAC+CGG	-	Chr1:1690046-1690065	None:intergenic	45.0%
	ATGATGATCTCAGTGCGCAT+GGG	-	Chr1:1690069-1690088	None:intergenic	45.0%
	ATGCCGAGAAGGTTAACAAC+AGG	+	Chr1:1690292-1690311	MsG0180000118.01.T01:CDS	45.0%
	ATGCTTGACTGGGATCCTAA+AGG	+	Chr1:1690689-1690708	MsG0180000118.01.T01:CDS	45.0%
	CTTGCTGAAGATGGCTATTC+CGG	+	Chr1:1690024-1690043	MsG0180000118.01.T01:CDS	45.0%
	GAGAAATGGTTAGGGATGGA+TGG	-	Chr1:1689727-1689746	None:intergenic	45.0%
	GGATGTGAGGTTATTGTCAG+TGG	+	Chr1:1690429-1690448	MsG0180000118.01.T01:CDS	45.0%
	TCATTTGCAACAACAGCAGC+AGG	-	Chr1:1690791-1690810	None:intergenic	45.0%
	TCCCCTGTTGTTAACCTTCT+CGG	-	Chr1:1690298-1690317	None:intergenic	45.0%
	TCTGATTAGGTGAGAAGGGT+AGG	+	Chr1:1690202-1690221	MsG0180000118.01.T01:intron	45.0%
	TGCCGAGAAGGTTAACAACA+GGG	+	Chr1:1690293-1690312	MsG0180000118.01.T01:CDS	45.0%
	TGGGATCCTAAAGGAAAGCA+AGG	+	Chr1:1690698-1690717	MsG0180000118.01.T01:CDS	45.0%
	TGTTACCATTCACACTCCCA+AGG	+	Chr1:1690745-1690764	MsG0180000118.01.T01:CDS	45.0%
!	CTATTCCGGTGTTGAGGTTA+GGG	+	Chr1:1690038-1690057	MsG0180000118.01.T01:CDS	45.0%
!!	CGGTGTGTTGAGGTTTGTTA+TGG	+	Chr1:1690392-1690411	MsG0180000118.01.T01:CDS	45.0%
!!!	TTATTTATTTTTGTTTTTAT+AGG	+	Chr1:1690148-1690167	MsG0180000118.01.T01:intron	5.0%
	AAACAACAGGGACTGGGACA+GGG	-	Chr1:1690823-1690842	None:intergenic	50.0%
	ACGTACTCTTCCTCCTCCTT+GGG	-	Chr1:1690764-1690783	None:intergenic	50.0%
	ACTACGAACCGAGAACAGCT+TGG	-	Chr1:1690107-1690126	None:intergenic	50.0%
	ACTCGTACCCAAGCTGTTCT+CGG	+	Chr1:1690096-1690115	MsG0180000118.01.T01:CDS	50.0%
	CTACGAACCGAGAACAGCTT+GGG	-	Chr1:1690106-1690125	None:intergenic	50.0%
	CTCATCTGGCCAACCTGTTA+AGG	+	Chr1:1690506-1690525	MsG0180000118.01.T01:CDS	50.0%
	CTTCGTTACAAGCTTCTCGG+AGG	+	Chr1:1690345-1690364	MsG0180000118.01.T01:CDS	50.0%
	GATGATGATCTCAGTGCGCA+TGG	-	Chr1:1690070-1690089	None:intergenic	50.0%
	GCCGAGAAGGTTAACAACAG+GGG	+	Chr1:1690294-1690313	MsG0180000118.01.T01:CDS	50.0%
	TACCATTCACACTCCCAAGG+AGG	+	Chr1:1690748-1690767	MsG0180000118.01.T01:CDS	50.0%
	TTGTTGCAGTTCGTCGCTGA+CGG	+	Chr1:1689961-1689980	MsG0180000118.01.T01:intron	50.0%
!	AAGTGGTGCTAAGGGATGTG+AGG	+	Chr1:1690416-1690435	MsG0180000118.01.T01:CDS	50.0%
!	AGATGGCTATTCCGGTGTTG+AGG	+	Chr1:1690032-1690051	MsG0180000118.01.T01:CDS	50.0%
!	GCTATTCCGGTGTTGAGGTT+AGG	+	Chr1:1690037-1690056	MsG0180000118.01.T01:CDS	50.0%
!!	ACCAGAGAGCTTGCTGAAGA+TGG	+	Chr1:1690015-1690034	MsG0180000118.01.T01:CDS	50.0%
!!	TTGCAGATTTAGCTTGGGGG+CGG	-	Chr1:1689811-1689830	None:intergenic	50.0%
	CAAACAACAGGGACTGGGAC+AGG	-	Chr1:1690824-1690843	None:intergenic	55.0%
	CATTCACACTCCCAAGGAGG+AGG	+	Chr1:1690751-1690770	MsG0180000118.01.T01:CDS	55.0%
	GACGTACTCTTCCTCCTCCT+TGG	-	Chr1:1690765-1690784	None:intergenic	55.0%
	GAGCCTGTTACGGTGTGTTG+AGG	+	Chr1:1690382-1690401	MsG0180000118.01.T01:CDS	55.0%
	GCCATCTTCAGCAAGCTCTC+TGG	-	Chr1:1690019-1690038	None:intergenic	55.0%
	GCTGTTCGCAGAGCCTGTTA+CGG	+	Chr1:1690372-1690391	MsG0180000118.01.T01:CDS	55.0%
!	AGGAGGAGGAAGAGTACGTC+AGG	+	Chr1:1690765-1690784	MsG0180000118.01.T01:CDS	55.0%
!	CTCCTCCTTGGGAGTGTGAA+TGG	-	Chr1:1690753-1690772	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	1689710	1691082	1689710	ID=MsG0180000118.01;Name=MsG0180000118.01
Chr1	mRNA	1689710	1691082	1689710	ID=MsG0180000118.01.T01;Parent=MsG0180000118.01;Name=MsG0180000118.01.T01;_AED=0.48;_eAED=0.48;_QI=123\|1\|1\|1\|0.66\|0.75\|4\|238\|239
Chr1	exon	1690662	1691082	1690662	ID=MsG0180000118.01.T01:exon:7148;Parent=MsG0180000118.01.T01
Chr1	exon	1690211	1690569	1690211	ID=MsG0180000118.01.T01:exon:7147;Parent=MsG0180000118.01.T01
Chr1	exon	1689970	1690117	1689970	ID=MsG0180000118.01.T01:exon:7146;Parent=MsG0180000118.01.T01
Chr1	exon	1689710	1689862	1689710	ID=MsG0180000118.01.T01:exon:7145;Parent=MsG0180000118.01.T01
Chr1	five_prime_UTR	1689710	1689832	1689710	ID=MsG0180000118.01.T01:five_prime_utr;Parent=MsG0180000118.01.T01
Chr1	CDS	1689833	1689862	1689833	ID=MsG0180000118.01.T01:cds;Parent=MsG0180000118.01.T01
Chr1	CDS	1689970	1690117	1689970	ID=MsG0180000118.01.T01:cds;Parent=MsG0180000118.01.T01
Chr1	CDS	1690211	1690569	1690211	ID=MsG0180000118.01.T01:cds;Parent=MsG0180000118.01.T01
Chr1	CDS	1690662	1690844	1690662	ID=MsG0180000118.01.T01:cds;Parent=MsG0180000118.01.T01
Chr1	three_prime_UTR	1690845	1691082	1690845	ID=MsG0180000118.01.T01:three_prime_utr;Parent=MsG0180000118.01.T01

Gene Sequence

>MsG0180000118.01.T01

ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTAACCAGAGAGCTTGCTGAAGATGGCTATTCCGGTGTTGAGGTTAGGGTTACTCCCATGCGCACTGAGATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTCGGTGAGAAGGGTAGGAGAATCAGAGAGCTTACCTCAGTAGTCCAGAAACGATTTAAGTTTCCTGAGAACAGTGTTGAACTATATGCCGAGAAGGTTAACAACAGGGGACTTTGTGCAATTGCACAAGCTGAGTCTCTTCGTTACAAGCTTCTCGGAGGTCTTGCTGTTCGCAGAGCCTGTTACGGTGTGTTGAGGTTTGTTATGGAAAGTGGTGCTAAGGGATGTGAGGTTATTGTCAGTGGAAAATTGAGAGCACAAAGAGCCAAGTCCATGAAGTTCAAGGATGGCTATATGATCTCATCTGGCCAACCTGTTAAGGATTACATTGACTCTGCTGTTAGACATGTTCTTCTCAGACAGGGTGTTCTTGGTATTAAGGTGAAGATTATGCTTGACTGGGATCCTAAAGGAAAGCAAGGTCCTAAAACTCCCCTACCTGATATTGTTACCATTCACACTCCCAAGGAGGAGGAAGAGTACGTCAGGCCTGCTGCTGTTGTTGCAAATGATATTGAGGTCCCTGTCCCAGTCCCTGTTGTTTGA

Protein sequence

>MsG0180000118.01.T01

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYVRPAAVVANDIEVPVPVPVV*