Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004829.01.T01 | XP_003591473.1 | 90.171 | 234 | 2 | 1 | 1 | 234 | 1 | 213 | 6.42E-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004829.01.T01 | Q9LUQ6 | 76.419 | 229 | 31 | 2 | 1 | 227 | 1 | 208 | 3.52E-119 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004829.01.T01 | B7FHF4 | 90.171 | 234 | 2 | 1 | 1 | 234 | 1 | 213 | 3.07e-145 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048040.01 | MsG0180004829.01 | 0.806617 | 7.541891e-50 | 4.112104e-47 |
| MsG0180000096.01 | MsG0180004829.01 | 0.824757 | 6.790699e-54 | 6.071016e-51 |
| MsG0180000118.01 | MsG0180004829.01 | 0.919535 | 3.989641e-87 | 1.287265e-82 |
| MsG0180001829.01 | MsG0180004829.01 | 0.865748 | 4.714381e-65 | 1.550892e-61 |
| MsG0180003897.01 | MsG0180004829.01 | 0.919087 | 6.969483e-87 | 2.196998e-82 |
| MsG0180004503.01 | MsG0180004829.01 | 0.809520 | 1.817245e-50 | 1.069277e-47 |
| MsG0180004829.01 | MsG0180005384.01 | 0.910489 | 1.769095e-82 | 3.621547e-78 |
| MsG0180004829.01 | MsG0180005573.01 | 0.853125 | 2.938737e-61 | 6.282715e-58 |
| MsG0180004829.01 | MsG0280006629.01 | 0.887533 | 1.312617e-72 | 9.797897e-69 |
| MsG0180004829.01 | MsG0280006747.01 | 0.885126 | 1.063398e-71 | 7.211100e-68 |
| MsG0180004829.01 | MsG0280006841.01 | 0.863000 | 3.400922e-64 | 1.015487e-60 |
| MsG0180004829.01 | MsG0280007055.01 | 0.941076 | 7.791022e-101 | 8.901767e-96 |
| MsG0180004829.01 | MsG0280010232.01 | 0.854859 | 9.296007e-62 | 2.105353e-58 |
| MsG0180004829.01 | MsG0280011308.01 | 0.862577 | 4.592897e-64 | 1.351550e-60 |
| MsG0180004829.01 | MsG0380014507.01 | 0.804658 | 1.943359e-49 | 1.007701e-46 |
| MsG0180004829.01 | MsG0380015494.01 | 0.850239 | 1.930697e-60 | 3.757664e-57 |
| MsG0180004829.01 | MsG0380015766.01 | 0.844283 | 8.319756e-59 | 1.336619e-55 |
| MsG0180004829.01 | MsG0380015857.01 | 0.892068 | 2.230467e-74 | 2.006554e-70 |
| MsG0180004829.01 | MsG0380016607.01 | 0.824378 | 8.340205e-54 | 7.374358e-51 |
| MsG0180004829.01 | MsG0380016622.01 | 0.821146 | 4.715408e-53 | 3.805241e-50 |
| MsG0180004829.01 | MsG0380016678.01 | 0.882632 | 8.848592e-71 | 5.428382e-67 |
| MsG0180004829.01 | MsG0380016744.01 | 0.835004 | 2.159932e-56 | 2.607076e-53 |
| MsG0180004829.01 | MsG0380016760.01 | 0.809744 | 1.626459e-50 | 9.627825e-48 |
| MsG0180004829.01 | MsG0480018164.01 | 0.925514 | 1.654090e-90 | 7.406282e-86 |
| MsG0180004829.01 | MsG0480019165.01 | 0.886189 | 4.245761e-72 | 3.002117e-68 |
| MsG0180004829.01 | MsG0480019632.01 | 0.830257 | 3.252167e-55 | 3.408641e-52 |
| MsG0180004829.01 | MsG0480020796.01 | 0.890811 | 7.025588e-74 | 6.001292e-70 |
| MsG0180004829.01 | MsG0480020911.01 | 0.880360 | 5.851176e-70 | 3.287077e-66 |
| MsG0180004829.01 | MsG0480021279.01 | 0.892724 | 1.218463e-74 | 1.127061e-70 |
| MsG0180004829.01 | MsG0480021293.01 | 0.833820 | 4.282009e-56 | 4.988360e-53 |
| MsG0180004829.01 | MsG0480021417.01 | 0.904832 | 8.127380e-80 | 1.279548e-75 |
| MsG0180004829.01 | MsG0480022006.01 | 0.860731 | 1.684132e-63 | 4.650155e-60 |
| MsG0180004829.01 | MsG0480022038.01 | 0.813898 | 2.027695e-51 | 1.340790e-48 |
| MsG0180004829.01 | MsG0480022041.01 | 0.888008 | 8.638768e-73 | 6.575681e-69 |
| MsG0180004829.01 | MsG0480022363.01 | 0.851596 | 8.008367e-61 | 1.629072e-57 |
| MsG0180004829.01 | MsG0480022789.01 | 0.819114 | 1.376319e-52 | 1.049661e-49 |
| MsG0180004829.01 | MsG0480022955.01 | 0.858685 | 6.951577e-63 | 1.788985e-59 |
| MsG0180004829.01 | MsG0480023380.01 | 0.897844 | 9.475517e-77 | 1.090449e-72 |
| MsG0180004829.01 | MsG0480023774.01 | 0.879488 | 1.196633e-69 | 6.499712e-66 |
| MsG0180004829.01 | MsG0480023931.01 | 0.811632 | 6.352943e-51 | 3.952483e-48 |
| MsG0180004829.01 | MsG0480023941.01 | 0.846382 | 2.250381e-59 | 3.866414e-56 |
| MsG0180004829.01 | MsG0480023996.01 | 0.817127 | 3.874405e-52 | 2.797532e-49 |
| MsG0180004829.01 | MsG0580024059.01 | 0.823068 | 1.690235e-53 | 1.440287e-50 |
| MsG0180004829.01 | MsG0580024481.01 | 0.865126 | 7.402304e-65 | 2.381788e-61 |
| MsG0180004829.01 | MsG0580024540.01 | 0.867056 | 1.813385e-65 | 6.245544e-62 |
| MsG0180004829.01 | MsG0580024738.01 | 0.882886 | 7.151865e-71 | 4.433403e-67 |
| MsG0180004829.01 | MsG0580024894.01 | 0.859662 | 3.540740e-63 | 9.423614e-60 |
| MsG0180004829.01 | MsG0580025073.01 | 0.822162 | 2.745080e-53 | 2.279492e-50 |
| MsG0180004829.01 | MsG0580025750.01 | 0.842918 | 1.928400e-58 | 2.967715e-55 |
| MsG0180004829.01 | MsG0580029284.01 | 0.832998 | 6.863017e-56 | 7.800868e-53 |
| MsG0180004829.01 | MsG0580029702.01 | 0.849777 | 2.600636e-60 | 4.984687e-57 |
| MsG0180004829.01 | MsG0580030073.01 | 0.849259 | 3.627780e-60 | 6.838350e-57 |
| MsG0180004829.01 | MsG0680031368.01 | 0.881153 | 3.041673e-70 | 1.762165e-66 |
| MsG0180004829.01 | MsG0680035611.01 | 0.836598 | 8.519483e-57 | 1.078748e-53 |
| MsG0180004829.01 | MsG0780037290.01 | 0.886066 | 4.725614e-72 | 3.324368e-68 |
| MsG0180004829.01 | MsG0780038383.01 | 0.849297 | 3.539324e-60 | 6.679483e-57 |
| MsG0180004829.01 | MsG0780040782.01 | 0.811422 | 7.058882e-51 | 4.367632e-48 |
| MsG0180004829.01 | MsG0780041058.01 | 0.875807 | 2.301851e-68 | 1.089903e-64 |
| MsG0180004829.01 | MsG0780041153.01 | 0.868008 | 8.984614e-66 | 3.199994e-62 |
| MsG0180004829.01 | MsG0780041244.01 | 0.815760 | 7.836101e-52 | 5.450855e-49 |
| MsG0180004829.01 | MsG0780041311.01 | 0.807901 | 4.029727e-50 | 2.271610e-47 |
| MsG0180004829.01 | MsG0780041461.01 | 0.804832 | 1.787560e-49 | 9.311393e-47 |
| MsG0180004829.01 | MsG0780041522.01 | 0.856800 | 2.518404e-62 | 6.081796e-59 |
| MsG0180004829.01 | MsG0780041790.01 | 0.822595 | 2.177414e-53 | 1.830879e-50 |
| MsG0180004829.01 | MsG0880041941.01 | 0.849346 | 3.429585e-60 | 6.482940e-57 |
| MsG0180004829.01 | MsG0880042517.01 | 0.927817 | 6.922347e-92 | 3.529060e-87 |
| MsG0180004829.01 | MsG0880043076.01 | 0.847588 | 1.051621e-59 | 1.878212e-56 |
| MsG0180004829.01 | MsG0880045836.01 | 0.828704 | 7.751406e-55 | 7.764364e-52 |
| MsG0180004829.01 | MsG0880046220.01 | 0.905703 | 3.242375e-80 | 5.308646e-76 |
| MsG0180004829.01 | MsG0880047779.01 | 0.838172 | 3.366669e-57 | 4.472468e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041332.01 | MsG0180004829.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004829.01.T01 | MTR_1g087910 | 90.171 | 234 | 2 | 1 | 1 | 234 | 1 | 213 | 7.77e-149 | 413 |
| MsG0180004829.01.T01 | MTR_1g087910 | 89.868 | 227 | 2 | 1 | 1 | 227 | 1 | 206 | 3.36e-144 | 401 |
| MsG0180004829.01.T01 | MTR_7g108955 | 84.746 | 236 | 13 | 2 | 1 | 234 | 1 | 215 | 3.54e-127 | 358 |
| MsG0180004829.01.T01 | MTR_7g108955 | 84.716 | 229 | 12 | 2 | 1 | 227 | 1 | 208 | 2.76e-123 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004829.01.T01 | AT3G16780 | 76.419 | 229 | 31 | 2 | 1 | 227 | 1 | 208 | 3.59e-120 | 340 |
| MsG0180004829.01.T01 | AT1G02780 | 83.092 | 207 | 14 | 1 | 1 | 207 | 1 | 186 | 1.97e-110 | 316 |
| MsG0180004829.01.T01 | AT4G02230 | 78.205 | 234 | 25 | 2 | 1 | 234 | 1 | 208 | 1.46e-109 | 314 |
| MsG0180004829.01.T01 | AT4G16030 | 42.384 | 151 | 32 | 9 | 78 | 216 | 6 | 113 | 1.18e-13 | 65.9 |
Find 83 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATACTTGATTTACTTCT+TGG | 0.183729 | 1:+83287559 | None:intergenic |
| CCTCCTCATCCAAAGGATTT+TGG | 0.205932 | 1:+83288116 | None:intergenic |
| TACTTCTTGGATTTCTTTGA+TGG | 0.223836 | 1:+83287572 | None:intergenic |
| AAAGGAAGGAATTTCATAAT+TGG | 0.234687 | 1:+83287393 | None:intergenic |
| TAACCAACTTCCTGATGTTT+TGG | 0.238015 | 1:+83288722 | None:intergenic |
| GAGATTTCATTGCACTCATT+AGG | 0.315100 | 1:+83289452 | None:intergenic |
| GCTGTTGCAGCTGGTGCGGC+TGG | 0.322299 | 1:+83287686 | None:intergenic |
| AGGCATGATAGGGGAATTAA+AGG | 0.340400 | 1:+83287375 | None:intergenic |
| CTCTCTAGCCTTCTCAGCCT+TGG | 0.342124 | 1:+83287954 | None:intergenic |
| GCGGCTGGTGCTGCAGCTGC+AGG | 0.351870 | 1:+83287701 | None:intergenic |
| GGCCAAGAGGGCGAAGAATA+AGG | 0.353398 | 1:-83287908 | MsG0180004829.01.T01:CDS |
| CAAGAACAAGAGAGTCCTTA+TGG | 0.366020 | 1:-83287992 | MsG0180004829.01.T01:CDS |
| AGATTTCATTGCACTCATTA+GGG | 0.375558 | 1:+83289453 | None:intergenic |
| GACTGGGTTGCTGTTGCAGC+TGG | 0.390238 | 1:+83287677 | None:intergenic |
| AAGGGACGTCATTCTGGATA+TGG | 0.390520 | 1:-83288622 | MsG0180004829.01.T01:intron |
| AAGAGGAAGGGACGTCATTC+TGG | 0.393970 | 1:-83288628 | MsG0180004829.01.T01:CDS |
| GGCTCCCCACCAAAATCCTT+TGG | 0.400346 | 1:-83288125 | MsG0180004829.01.T01:CDS |
| AGTGAATCTTAGTTGGCTTC+CGG | 0.400791 | 1:+83288683 | None:intergenic |
| AGCCTTATTCTTCGCCCTCT+TGG | 0.400876 | 1:+83287906 | None:intergenic |
| AGTGCATTTCCATACCAAAA+TGG | 0.402028 | 1:+83287447 | None:intergenic |
| TGTCAATCTTCTTTGCCTCT+CGG | 0.425253 | 1:+83288061 | None:intergenic |
| TTAAGGATGGCTTCATTATC+CGG | 0.428777 | 1:-83288702 | MsG0180004829.01.T01:CDS |
| AGTGTGGTCGTGGCAAGGTC+TGG | 0.433202 | 1:-83289481 | MsG0180004829.01.T01:CDS |
| TCGTTGCAGGCCAAAACATC+AGG | 0.437194 | 1:-83288732 | MsG0180004829.01.T01:intron |
| GTTTAGATACTTACTGGGAC+TGG | 0.459001 | 1:+83287660 | None:intergenic |
| GCTGCAGGAACCTTCTCTCC+TGG | 0.459743 | 1:+83287716 | None:intergenic |
| AAACATCAGGAAGTTGGTTA+AGG | 0.466451 | 1:-83288719 | MsG0180004829.01.T01:CDS |
| AGCAAAGCGCTCTTCTCTGC+GGG | 0.467270 | 1:+83287864 | None:intergenic |
| TTGATAAATAGGTAAAAGAA+AGG | 0.468156 | 1:-83288163 | MsG0180004829.01.T01:intron |
| GACATTATCTGATCAGTTTG+AGG | 0.469564 | 1:-83287929 | MsG0180004829.01.T01:CDS |
| GTAGCAGTAGTTACGTGAAT+TGG | 0.471557 | 1:+83289424 | None:intergenic |
| GGGCGAAGAATAAGGCTAGC+AGG | 0.473984 | 1:-83287900 | MsG0180004829.01.T01:CDS |
| TGAGGAGGATGCGTGTCCTC+AGG | 0.478520 | 1:-83288101 | MsG0180004829.01.T01:CDS |
| GAGCGGGAGTGAATCTTAGT+TGG | 0.479570 | 1:+83288676 | None:intergenic |
| AAATGAAAATACTCGACCTC+TGG | 0.480180 | 1:+83287539 | None:intergenic |
| TTCACTCCCGCTCCCGTGCT+AGG | 0.486394 | 1:-83288666 | MsG0180004829.01.T01:CDS |
| TGGTCGTGGCAAGGTCTGGC+TGG | 0.492270 | 1:-83289477 | MsG0180004829.01.T01:CDS |
| AGCGTACTCAAGTGTGGTCG+TGG | 0.503558 | 1:-83289491 | MsG0180004829.01.T01:CDS |
| CTCCTTCATACGCCTAGCAC+GGG | 0.507928 | 1:+83288654 | None:intergenic |
| AGAATGACGTCCCTTCCTCT+TGG | 0.519292 | 1:+83288630 | None:intergenic |
| CTCCCGTGCTAGGCGTATGA+AGG | 0.520929 | 1:-83288656 | MsG0180004829.01.T01:CDS |
| CCTCCTTCATACGCCTAGCA+CGG | 0.532368 | 1:+83288653 | None:intergenic |
| ACTTGTGAATACTCTCCATA+AGG | 0.533671 | 1:+83287977 | None:intergenic |
| AGGCCAAAACATCAGGAAGT+TGG | 0.540880 | 1:-83288725 | MsG0180004829.01.T01:CDS |
| ATCAGGAAGTTGGTTAAGGA+TGG | 0.541752 | 1:-83288715 | MsG0180004829.01.T01:CDS |
| TCACAAGTCCAAGGCTGAGA+AGG | 0.542917 | 1:-83287962 | MsG0180004829.01.T01:CDS |
| TTTAGATACTTACTGGGACT+GGG | 0.545217 | 1:+83287661 | None:intergenic |
| CATACGCCTAGCACGGGAGC+GGG | 0.545913 | 1:+83288660 | None:intergenic |
| CCACCAAAATCCTTTGGATG+AGG | 0.555880 | 1:-83288119 | MsG0180004829.01.T01:CDS |
| TATGAAGGAGGCCAAGAGGA+AGG | 0.560584 | 1:-83288641 | MsG0180004829.01.T01:CDS |
| TGATATGTACATGAAGGTGA+AGG | 0.563752 | 1:-83288025 | MsG0180004829.01.T01:CDS |
| TGTATAGGGTCCAGGAGAGA+AGG | 0.563890 | 1:-83287726 | MsG0180004829.01.T01:intron |
| TGATAAATAGGTAAAAGAAA+GGG | 0.567052 | 1:-83288162 | MsG0180004829.01.T01:intron |
| TCATACGCCTAGCACGGGAG+CGG | 0.568186 | 1:+83288659 | None:intergenic |
| ACTCAAGTGTGGTCGTGGCA+AGG | 0.568268 | 1:-83289486 | MsG0180004829.01.T01:CDS |
| CCAAAATCCTTTGGATGAGG+AGG | 0.569919 | 1:-83288116 | MsG0180004829.01.T01:CDS |
| GGCGAAGAATAAGGCTAGCA+GGG | 0.575881 | 1:-83287899 | MsG0180004829.01.T01:CDS |
| AAAATCATAACACAAAACAT+TGG | 0.578848 | 1:+83289382 | None:intergenic |
| TTTGGTATGGAAATGCACTT+TGG | 0.589403 | 1:-83287443 | MsG0180004829.01.T01:three_prime_UTR |
| AGAATAAGGCTAGCAGGGAA+AGG | 0.589605 | 1:-83287894 | MsG0180004829.01.T01:CDS |
| ATGATAGGGGAATTAAAGGA+AGG | 0.592567 | 1:+83287379 | None:intergenic |
| GAGCAAAGCGCTCTTCTCTG+CGG | 0.593895 | 1:+83287863 | None:intergenic |
| TGATCAGTTTGAGGCCAAGA+GGG | 0.598337 | 1:-83287920 | MsG0180004829.01.T01:CDS |
| CCGTGCTAGGCGTATGAAGG+AGG | 0.607212 | 1:-83288653 | MsG0180004829.01.T01:CDS |
| TAAAAGAAAGGGTACAAGAG+AGG | 0.608223 | 1:-83288151 | MsG0180004829.01.T01:CDS |
| CACGCATCCTCCTCATCCAA+AGG | 0.610691 | 1:+83288109 | None:intergenic |
| GAAAGGGTACAAGAGAGGCT+AGG | 0.611551 | 1:-83288146 | MsG0180004829.01.T01:CDS |
| GATATGTACATGAAGGTGAA+GGG | 0.614061 | 1:-83288024 | MsG0180004829.01.T01:CDS |
| ATGAAGGAGGCCAAGAGGAA+GGG | 0.617125 | 1:-83288640 | MsG0180004829.01.T01:CDS |
| GGAGAGTATTCACAAGTCCA+AGG | 0.617146 | 1:-83287971 | MsG0180004829.01.T01:CDS |
| GGTTGCTGTTGCAGCTGGTG+CGG | 0.620402 | 1:+83287682 | None:intergenic |
| GCCGCCAGCGTACTCAAGTG+TGG | 0.623938 | 1:-83289497 | MsG0180004829.01.T01:CDS |
| CTGATCAGTTTGAGGCCAAG+AGG | 0.627289 | 1:-83287921 | MsG0180004829.01.T01:CDS |
| GGCGTATGAAGGAGGCCAAG+AGG | 0.634053 | 1:-83288645 | MsG0180004829.01.T01:CDS |
| GTAGTTACGTGAATTGGCCA+TGG | 0.639618 | 1:+83289430 | None:intergenic |
| TGAGTGCAATGAAATCTCCA+TGG | 0.652574 | 1:-83289447 | MsG0180004829.01.T01:CDS |
| GAAGTAAATCAAGTATCCAG+AGG | 0.666529 | 1:-83287555 | MsG0180004829.01.T01:exon |
| ACGACCACACTTGAGTACGC+TGG | 0.682599 | 1:+83289493 | None:intergenic |
| GTATCATGATATGTACATGA+AGG | 0.691105 | 1:-83288031 | MsG0180004829.01.T01:CDS |
| ACCACACTTGAGTACGCTGG+CGG | 0.695452 | 1:+83289496 | None:intergenic |
| TGTCGCTCAAACTTCAGAAG+CGG | 0.696714 | 1:-83289523 | MsG0180004829.01.T01:CDS |
| TTTGCTTCGCAAGTACCGAG+AGG | 0.708306 | 1:-83288076 | MsG0180004829.01.T01:CDS |
| ACTTGCGAAGCAAACGCCTG+AGG | 0.708807 | 1:+83288085 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTAAAATATTTTAATTTC+AGG | - | Chr1:83287814-83287833 | MsG0180004829.01.T01:intron | 10.0% |
| !! | AATTCATATTAAAACTATCA+AGG | + | Chr1:83288335-83288354 | None:intergenic | 15.0% |
| !! | CATATATTATCAAAACATTA+TGG | + | Chr1:83289086-83289105 | None:intergenic | 15.0% |
| !!! | ATAGTTTTAATATGAATTGA+AGG | - | Chr1:83288337-83288356 | MsG0180004829.01.T01:intron | 15.0% |
| !! | AAAATCATAACACAAAACAT+TGG | + | Chr1:83287535-83287554 | None:intergenic | 20.0% |
| !! | ATTTGCACTTATTGATAAAT+AGG | - | Chr1:83288740-83288759 | MsG0180004829.01.T01:intron | 20.0% |
| !! | GTAGGAAAAAAAAAAAACTA+GGG | - | Chr1:83287710-83287729 | MsG0180004829.01.T01:CDS | 20.0% |
| !! | TGATAAATAGGTAAAAGAAA+GGG | - | Chr1:83288752-83288771 | MsG0180004829.01.T01:intron | 20.0% |
| !! | TGATAATATATGTAGTGAAT+TGG | - | Chr1:83289094-83289113 | MsG0180004829.01.T01:intron | 20.0% |
| !! | TGTAGGAAAAAAAAAAAACT+AGG | - | Chr1:83287709-83287728 | MsG0180004829.01.T01:CDS | 20.0% |
| !! | TTCATAACAAAAATGAGTTA+AGG | + | Chr1:83288065-83288084 | None:intergenic | 20.0% |
| !! | TTGATAAATAGGTAAAAGAA+AGG | - | Chr1:83288751-83288770 | MsG0180004829.01.T01:intron | 20.0% |
| !!! | ACAACATTTCAATGTTTTTT+GGG | + | Chr1:83287747-83287766 | None:intergenic | 20.0% |
| !!! | TACAAGTACAATTTTGTATT+GGG | - | Chr1:83289430-83289449 | MsG0180004829.01.T01:CDS | 20.0% |
| !!! | TAGTTTTTTTTGTTATGTTG+TGG | - | Chr1:83289294-83289313 | MsG0180004829.01.T01:intron | 20.0% |
| !!! | TTTATATTTTGTTGCCATTT+TGG | - | Chr1:83289453-83289472 | MsG0180004829.01.T01:CDS | 20.0% |
| ! | AAAGGAAGGAATTTCATAAT+TGG | + | Chr1:83289524-83289543 | None:intergenic | 25.0% |
| ! | ATTAAAATGCCCAATTTACT+TGG | - | Chr1:83288005-83288024 | MsG0180004829.01.T01:CDS | 25.0% |
| ! | TAGAATACATTCACTCTATT+TGG | - | Chr1:83288436-83288455 | MsG0180004829.01.T01:intron | 25.0% |
| ! | TGATTGTGTTAATTGTTGAT+TGG | - | Chr1:83288092-83288111 | MsG0180004829.01.T01:CDS | 25.0% |
| ! | TTAAAATGCCCAATTTACTT+GGG | - | Chr1:83288006-83288025 | MsG0180004829.01.T01:CDS | 25.0% |
| !! | AAAGTGTTTAGATACTTACT+GGG | + | Chr1:83289262-83289281 | None:intergenic | 25.0% |
| !! | ATCTAAACACTTTTGTTACT+TGG | - | Chr1:83289269-83289288 | MsG0180004829.01.T01:intron | 25.0% |
| !! | GTACAAGTACAATTTTGTAT+TGG | - | Chr1:83289429-83289448 | MsG0180004829.01.T01:CDS | 25.0% |
| !! | TGAAAAAATTGGGCTTTTAT+TGG | - | Chr1:83287936-83287955 | MsG0180004829.01.T01:CDS | 25.0% |
| !! | TGTATTTTTCTGATCATATG+TGG | - | Chr1:83288126-83288145 | MsG0180004829.01.T01:CDS | 25.0% |
| !!! | AAAAGTGTTTAGATACTTAC+TGG | + | Chr1:83289263-83289282 | None:intergenic | 25.0% |
| !!! | ACTTGATTAAGATTTTAGAG+TGG | - | Chr1:83287768-83287787 | MsG0180004829.01.T01:intron | 25.0% |
| !!! | CACAACATTTCAATGTTTTT+TGG | + | Chr1:83287748-83287767 | None:intergenic | 25.0% |
| !!! | GAATAGATGTTGTTTTTGTT+CGG | - | Chr1:83287644-83287663 | MsG0180004829.01.T01:intron | 25.0% |
| AGATTTCATTGCACTCATTA+GGG | + | Chr1:83287464-83287483 | None:intergenic | 30.0% | |
| ATCTCCACTAAGTTCATATT+AGG | + | Chr1:83287987-83288006 | None:intergenic | 30.0% | |
| GTATCATGATATGTACATGA+AGG | - | Chr1:83288883-83288902 | MsG0180004829.01.T01:intron | 30.0% | |
| TAAAATGCCCAATTTACTTG+GGG | - | Chr1:83288007-83288026 | MsG0180004829.01.T01:CDS | 30.0% | |
| TACTTCTTGGATTTCTTTGA+TGG | + | Chr1:83289345-83289364 | None:intergenic | 30.0% | |
| TATTCAATAGCAGAACTTGT+AGG | - | Chr1:83287692-83287711 | MsG0180004829.01.T01:CDS | 30.0% | |
| TCAGTTGTGTAGAATATTGT+AGG | - | Chr1:83288607-83288626 | MsG0180004829.01.T01:intron | 30.0% | |
| TCTCCACTAAGTTCATATTA+GGG | + | Chr1:83287986-83288005 | None:intergenic | 30.0% | |
| TGGATACTTGATTTACTTCT+TGG | + | Chr1:83289358-83289377 | None:intergenic | 30.0% | |
| ! | AGCCTTTTCACTGAAAAAAT+TGG | - | Chr1:83287925-83287944 | MsG0180004829.01.T01:CDS | 30.0% |
| ! | ATTTTTCTGATCATATGTGG+TGG | - | Chr1:83288129-83288148 | MsG0180004829.01.T01:CDS | 30.0% |
| ! | ATTTTTGTGCCTTTATGAAC+TGG | - | Chr1:83287890-83287909 | MsG0180004829.01.T01:CDS | 30.0% |
| ! | GCCTTTTCACTGAAAAAATT+GGG | - | Chr1:83287926-83287945 | MsG0180004829.01.T01:CDS | 30.0% |
| ! | TGGACCCTATACATTTTAAA+AGG | + | Chr1:83289181-83289200 | None:intergenic | 30.0% |
| ! | TTTTTCTGATCATATGTGGT+GGG | - | Chr1:83288130-83288149 | MsG0180004829.01.T01:CDS | 30.0% |
| ! | TTTTTGTGCCTTTATGAACT+GGG | - | Chr1:83287891-83287910 | MsG0180004829.01.T01:CDS | 30.0% |
| !! | CCTATACATTTTAAAAGGCA+GGG | + | Chr1:83289176-83289195 | None:intergenic | 30.0% |
| !! | TAGAGTGGATTTAGTTGTTT+TGG | - | Chr1:83287783-83287802 | MsG0180004829.01.T01:intron | 30.0% |
| !! | TGTTTTTGTTCGGAAATGTA+AGG | - | Chr1:83287654-83287673 | MsG0180004829.01.T01:intron | 30.0% |
| !!! | ATGTAAGGTGTGTTGTTTTA+TGG | - | Chr1:83287669-83287688 | MsG0180004829.01.T01:intron | 30.0% |
| !!! | ATTTTGTTGCCATTTTGGTA+TGG | - | Chr1:83289458-83289477 | MsG0180004829.01.T01:CDS | 30.0% |
| !!! | CCTGCCTTTTAAAATGTATA+GGG | - | Chr1:83289174-83289193 | MsG0180004829.01.T01:intron | 30.0% |
| !!! | GACTCATAAGCTAGTTTTAA+GGG | - | Chr1:83287836-83287855 | MsG0180004829.01.T01:intron | 30.0% |
| !!! | TTTTAAAATGTATAGGGTCC+AGG | - | Chr1:83289180-83289199 | MsG0180004829.01.T01:intron | 30.0% |
| AAAATGCCCAATTTACTTGG+GGG | - | Chr1:83288008-83288027 | MsG0180004829.01.T01:CDS | 35.0% | |
| AAATGAAAATACTCGACCTC+TGG | + | Chr1:83289378-83289397 | None:intergenic | 35.0% | |
| ACTTGTGAATACTCTCCATA+AGG | + | Chr1:83288940-83288959 | None:intergenic | 35.0% | |
| AGTGCATTTCCATACCAAAA+TGG | + | Chr1:83289470-83289489 | None:intergenic | 35.0% | |
| CCATAATAATACTCGTGTGA+TGG | + | Chr1:83288554-83288573 | None:intergenic | 35.0% | |
| CCATCACACGAGTATTATTA+TGG | - | Chr1:83288551-83288570 | MsG0180004829.01.T01:intron | 35.0% | |
| GAAGTAAATCAAGTATCCAG+AGG | - | Chr1:83289359-83289378 | MsG0180004829.01.T01:intron | 35.0% | |
| GACATTATCTGATCAGTTTG+AGG | - | Chr1:83288985-83289004 | MsG0180004829.01.T01:intron | 35.0% | |
| GAGATTTCATTGCACTCATT+AGG | + | Chr1:83287465-83287484 | None:intergenic | 35.0% | |
| GATATGTACATGAAGGTGAA+GGG | - | Chr1:83288890-83288909 | MsG0180004829.01.T01:intron | 35.0% | |
| GTACCCTAATATGAACTTAG+TGG | - | Chr1:83287980-83287999 | MsG0180004829.01.T01:CDS | 35.0% | |
| TGATATGTACATGAAGGTGA+AGG | - | Chr1:83288889-83288908 | MsG0180004829.01.T01:intron | 35.0% | |
| TTAAGGATGGCTTCATTATC+CGG | - | Chr1:83288212-83288231 | MsG0180004829.01.T01:intron | 35.0% | |
| TTTAGATACTTACTGGGACT+GGG | + | Chr1:83289256-83289275 | None:intergenic | 35.0% | |
| TTTGGTATGGAAATGCACTT+TGG | - | Chr1:83289471-83289490 | MsG0180004829.01.T01:CDS | 35.0% | |
| ! | AAACATCAGGAAGTTGGTTA+AGG | - | Chr1:83288195-83288214 | MsG0180004829.01.T01:intron | 35.0% |
| ! | ACTTCACACGAGTATTTCTA+TGG | - | Chr1:83288672-83288691 | MsG0180004829.01.T01:CDS | 35.0% |
| ! | TAAAAGAAAGGGTACAAGAG+AGG | - | Chr1:83288763-83288782 | MsG0180004829.01.T01:intron | 35.0% |
| ! | TAACCAACTTCCTGATGTTT+TGG | + | Chr1:83288195-83288214 | None:intergenic | 35.0% |
| !! | CCCTATACATTTTAAAAGGC+AGG | + | Chr1:83289177-83289196 | None:intergenic | 35.0% |
| !! | TTTTAAAAGGCAGGGTGATA+TGG | + | Chr1:83289168-83289187 | None:intergenic | 35.0% |
| !!! | CCCTGCCTTTTAAAATGTAT+AGG | - | Chr1:83289173-83289192 | MsG0180004829.01.T01:intron | 35.0% |
| !!! | GCCCAATTTTTTCAGTGAAA+AGG | + | Chr1:83287930-83287949 | None:intergenic | 35.0% |
| !!! | GGACTCATAAGCTAGTTTTA+AGG | - | Chr1:83287835-83287854 | MsG0180004829.01.T01:intron | 35.0% |
| ATGAGAACCCCCAAGTAAAT+TGG | + | Chr1:83288018-83288037 | None:intergenic | 40.0% | |
| CAAGAACAAGAGAGTCCTTA+TGG | - | Chr1:83288922-83288941 | MsG0180004829.01.T01:intron | 40.0% | |
| CCAACCAAACCATTTATCAC+AGG | + | Chr1:83288158-83288177 | None:intergenic | 40.0% | |
| GTAGCAGTAGTTACGTGAAT+TGG | + | Chr1:83287493-83287512 | None:intergenic | 40.0% | |
| GTTTAGATACTTACTGGGAC+TGG | + | Chr1:83289257-83289276 | None:intergenic | 40.0% | |
| TCTATGGTACTTGCACTATC+AGG | - | Chr1:83288688-83288707 | MsG0180004829.01.T01:CDS | 40.0% | |
| TGAGAACCCCCAAGTAAATT+GGG | + | Chr1:83288017-83288036 | None:intergenic | 40.0% | |
| TGAGTGCAATGAAATCTCCA+TGG | - | Chr1:83287467-83287486 | MsG0180004829.01.T01:three_prime_UTR | 40.0% | |
| TGTCAATCTTCTTTGCCTCT+CGG | + | Chr1:83288856-83288875 | None:intergenic | 40.0% | |
| TTGAGCATCCCAGTTCATAA+AGG | + | Chr1:83287902-83287921 | None:intergenic | 40.0% | |
| ! | AGTGAATCTTAGTTGGCTTC+CGG | + | Chr1:83288234-83288253 | None:intergenic | 40.0% |
| ! | ATCAGGAAGTTGGTTAAGGA+TGG | - | Chr1:83288199-83288218 | MsG0180004829.01.T01:intron | 40.0% |
| ! | TCAGTTGTGCGAAGTATTCT+AGG | - | Chr1:83288476-83288495 | MsG0180004829.01.T01:intron | 40.0% |
| !! | CCTGTGATAAATGGTTTGGT+TGG | - | Chr1:83288155-83288174 | MsG0180004829.01.T01:CDS | 40.0% |
| !! | CTCATCCAAAGGATTTTGGT+GGG | + | Chr1:83288797-83288816 | None:intergenic | 40.0% |
| !! | TCATCCAAAGGATTTTGGTG+GGG | + | Chr1:83288796-83288815 | None:intergenic | 40.0% |
| AAGGGACGTCATTCTGGATA+TGG | - | Chr1:83288292-83288311 | MsG0180004829.01.T01:intron | 45.0% | |
| AGAATAAGGCTAGCAGGGAA+AGG | - | Chr1:83289020-83289039 | MsG0180004829.01.T01:intron | 45.0% | |
| AGGCCAAAACATCAGGAAGT+TGG | - | Chr1:83288189-83288208 | MsG0180004829.01.T01:intron | 45.0% | |
| CCAAAATCCTTTGGATGAGG+AGG | - | Chr1:83288798-83288817 | MsG0180004829.01.T01:intron | 45.0% | |
| CCACCAAAATCCTTTGGATG+AGG | - | Chr1:83288795-83288814 | MsG0180004829.01.T01:intron | 45.0% | |
| GGAGCCTGTGATAAATGGTT+TGG | - | Chr1:83288151-83288170 | MsG0180004829.01.T01:CDS | 45.0% | |
| GGTACTTGCACTATCAGGAT+AGG | - | Chr1:83288693-83288712 | MsG0180004829.01.T01:CDS | 45.0% | |
| GTAGTTACGTGAATTGGCCA+TGG | + | Chr1:83287487-83287506 | None:intergenic | 45.0% | |
| TGTCGCTCAAACTTCAGAAG+CGG | - | Chr1:83287391-83287410 | MsG0180004829.01.T01:three_prime_UTR | 45.0% | |
| ! | CCTCATCCAAAGGATTTTGG+TGG | + | Chr1:83288798-83288817 | None:intergenic | 45.0% |
| ! | CCTCCTCATCCAAAGGATTT+TGG | + | Chr1:83288801-83288820 | None:intergenic | 45.0% |
| ! | TGATCAGTTTGAGGCCAAGA+GGG | - | Chr1:83288994-83289013 | MsG0180004829.01.T01:intron | 45.0% |
| !! | GGAGAGTATTCACAAGTCCA+AGG | - | Chr1:83288943-83288962 | MsG0180004829.01.T01:intron | 45.0% |
| !! | TTTGGTTGGTTTCTCGTTGC+AGG | - | Chr1:83288169-83288188 | MsG0180004829.01.T01:intron | 45.0% |
| AAGAGGAAGGGACGTCATTC+TGG | - | Chr1:83288286-83288305 | MsG0180004829.01.T01:intron | 50.0% | |
| AGAATGACGTCCCTTCCTCT+TGG | + | Chr1:83288287-83288306 | None:intergenic | 50.0% | |
| ATGAAGGAGGCCAAGAGGAA+GGG | - | Chr1:83288274-83288293 | MsG0180004829.01.T01:intron | 50.0% | |
| CTGAAGTTTGAGCGACACCA+TGG | + | Chr1:83287388-83287407 | None:intergenic | 50.0% | |
| GAGCGGGAGTGAATCTTAGT+TGG | + | Chr1:83288241-83288260 | None:intergenic | 50.0% | |
| GGCGAAGAATAAGGCTAGCA+GGG | - | Chr1:83289015-83289034 | MsG0180004829.01.T01:intron | 50.0% | |
| TATGAAGGAGGCCAAGAGGA+AGG | - | Chr1:83288273-83288292 | MsG0180004829.01.T01:intron | 50.0% | |
| TCACAAGTCCAAGGCTGAGA+AGG | - | Chr1:83288952-83288971 | MsG0180004829.01.T01:intron | 50.0% | |
| TCGTTGCAGGCCAAAACATC+AGG | - | Chr1:83288182-83288201 | MsG0180004829.01.T01:intron | 50.0% | |
| TGGTGGGAGCCTGTGATAAA+TGG | - | Chr1:83288146-83288165 | MsG0180004829.01.T01:CDS | 50.0% | |
| TGTATAGGGTCCAGGAGAGA+AGG | - | Chr1:83289188-83289207 | MsG0180004829.01.T01:intron | 50.0% | |
| ! | CTGATCAGTTTGAGGCCAAG+AGG | - | Chr1:83288993-83289012 | MsG0180004829.01.T01:intron | 50.0% |
| ! | GAAAGGGTACAAGAGAGGCT+AGG | - | Chr1:83288768-83288787 | MsG0180004829.01.T01:intron | 50.0% |
| !! | AGCCTTATTCTTCGCCCTCT+TGG | + | Chr1:83289011-83289030 | None:intergenic | 50.0% |
| !! | TTTGCTTCGCAAGTACCGAG+AGG | - | Chr1:83288838-83288857 | MsG0180004829.01.T01:intron | 50.0% |
| ACCACACTTGAGTACGCTGG+CGG | + | Chr1:83287421-83287440 | None:intergenic | 55.0% | |
| ACGACCACACTTGAGTACGC+TGG | + | Chr1:83287424-83287443 | None:intergenic | 55.0% | |
| ACTCAAGTGTGGTCGTGGCA+AGG | - | Chr1:83287428-83287447 | MsG0180004829.01.T01:three_prime_UTR | 55.0% | |
| ACTTGCGAAGCAAACGCCTG+AGG | + | Chr1:83288832-83288851 | None:intergenic | 55.0% | |
| AGCGTACTCAAGTGTGGTCG+TGG | - | Chr1:83287423-83287442 | MsG0180004829.01.T01:three_prime_UTR | 55.0% | |
| CACGCATCCTCCTCATCCAA+AGG | + | Chr1:83288808-83288827 | None:intergenic | 55.0% | |
| CCTCCTTCATACGCCTAGCA+CGG | + | Chr1:83288264-83288283 | None:intergenic | 55.0% | |
| CTCCTTCATACGCCTAGCAC+GGG | + | Chr1:83288263-83288282 | None:intergenic | 55.0% | |
| GGCCAAGAGGGCGAAGAATA+AGG | - | Chr1:83289006-83289025 | MsG0180004829.01.T01:intron | 55.0% | |
| GGCTCCCCACCAAAATCCTT+TGG | - | Chr1:83288789-83288808 | MsG0180004829.01.T01:intron | 55.0% | |
| GGGCGAAGAATAAGGCTAGC+AGG | - | Chr1:83289014-83289033 | MsG0180004829.01.T01:intron | 55.0% | |
| ! | AGCAAAGCGCTCTTCTCTGC+GGG | + | Chr1:83289053-83289072 | None:intergenic | 55.0% |
| ! | CTCTCTAGCCTTCTCAGCCT+TGG | + | Chr1:83288963-83288982 | None:intergenic | 55.0% |
| ! | GAGCAAAGCGCTCTTCTCTG+CGG | + | Chr1:83289054-83289073 | None:intergenic | 55.0% |
| AGTGTGGTCGTGGCAAGGTC+TGG | - | Chr1:83287433-83287452 | MsG0180004829.01.T01:three_prime_UTR | 60.0% | |
| CCGTGCTAGGCGTATGAAGG+AGG | - | Chr1:83288261-83288280 | MsG0180004829.01.T01:intron | 60.0% | |
| CTCCCGTGCTAGGCGTATGA+AGG | - | Chr1:83288258-83288277 | MsG0180004829.01.T01:intron | 60.0% | |
| GCTGCAGGAACCTTCTCTCC+TGG | + | Chr1:83289201-83289220 | None:intergenic | 60.0% | |
| GGCGTATGAAGGAGGCCAAG+AGG | - | Chr1:83288269-83288288 | MsG0180004829.01.T01:intron | 60.0% | |
| TCATACGCCTAGCACGGGAG+CGG | + | Chr1:83288258-83288277 | None:intergenic | 60.0% | |
| TGAGGAGGATGCGTGTCCTC+AGG | - | Chr1:83288813-83288832 | MsG0180004829.01.T01:intron | 60.0% | |
| ! | GACTGGGTTGCTGTTGCAGC+TGG | + | Chr1:83289240-83289259 | None:intergenic | 60.0% |
| ! | GGTTGCTGTTGCAGCTGGTG+CGG | + | Chr1:83289235-83289254 | None:intergenic | 60.0% |
| CATACGCCTAGCACGGGAGC+GGG | + | Chr1:83288257-83288276 | None:intergenic | 65.0% | |
| GCCGCCAGCGTACTCAAGTG+TGG | - | Chr1:83287417-83287436 | MsG0180004829.01.T01:three_prime_UTR | 65.0% | |
| TGGTCGTGGCAAGGTCTGGC+TGG | - | Chr1:83287437-83287456 | MsG0180004829.01.T01:three_prime_UTR | 65.0% | |
| TTCACTCCCGCTCCCGTGCT+AGG | - | Chr1:83288248-83288267 | MsG0180004829.01.T01:intron | 65.0% | |
| GCTGTTGCAGCTGGTGCGGC+TGG | + | Chr1:83289231-83289250 | None:intergenic | 70.0% | |
| !! | GCGGCTGGTGCTGCAGCTGC+AGG | + | Chr1:83289216-83289235 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 83287387 | 83289549 | 83287387 | ID=MsG0180004829.01;Name=MsG0180004829.01 |
| Chr1 | mRNA | 83287387 | 83289549 | 83287387 | ID=MsG0180004829.01.T01;Parent=MsG0180004829.01;Name=MsG0180004829.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.75|0.8|1|0.75|0.8|5|184|234 |
| Chr1 | exon | 83287387 | 83287595 | 83287387 | ID=MsG0180004829.01.T01:exon:8942;Parent=MsG0180004829.01.T01 |
| Chr1 | exon | 83287674 | 83287741 | 83287674 | ID=MsG0180004829.01.T01:exon:8941;Parent=MsG0180004829.01.T01 |
| Chr1 | exon | 83287861 | 83288174 | 83287861 | ID=MsG0180004829.01.T01:exon:8940;Parent=MsG0180004829.01.T01 |
| Chr1 | exon | 83288623 | 83288745 | 83288623 | ID=MsG0180004829.01.T01:exon:8939;Parent=MsG0180004829.01.T01 |
| Chr1 | exon | 83289375 | 83289549 | 83289375 | ID=MsG0180004829.01.T01:exon:8938;Parent=MsG0180004829.01.T01 |
| Chr1 | CDS | 83289375 | 83289549 | 83289375 | ID=MsG0180004829.01.T01:cds;Parent=MsG0180004829.01.T01 |
| Chr1 | CDS | 83288623 | 83288745 | 83288623 | ID=MsG0180004829.01.T01:cds;Parent=MsG0180004829.01.T01 |
| Chr1 | CDS | 83287861 | 83288174 | 83287861 | ID=MsG0180004829.01.T01:cds;Parent=MsG0180004829.01.T01 |
| Chr1 | CDS | 83287674 | 83287741 | 83287674 | ID=MsG0180004829.01.T01:cds;Parent=MsG0180004829.01.T01 |
| Chr1 | CDS | 83287571 | 83287595 | 83287571 | ID=MsG0180004829.01.T01:cds;Parent=MsG0180004829.01.T01 |
| Chr1 | three_prime_UTR | 83287387 | 83287570 | 83287387 | ID=MsG0180004829.01.T01:three_prime_utr;Parent=MsG0180004829.01.T01 |
| Gene Sequence |
| Protein sequence |
