Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016607.01.T01 | XP_003602368.1 | 98.198 | 111 | 1 | 1 | 1 | 111 | 1 | 110 | 1.49E-68 | 211 |
| MsG0380016607.01.T02 | XP_003602368.1 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 8.17E-57 | 181 |
| MsG0380016607.01.T03 | XP_003602368.1 | 98.571 | 70 | 1 | 0 | 1 | 70 | 24 | 93 | 1.10E-37 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016607.01.T01 | P52855 | 66.667 | 111 | 35 | 1 | 1 | 111 | 1 | 109 | 6.24E-29 | 103 |
| MsG0380016607.01.T02 | P52855 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 7.84E-26 | 95.5 |
| MsG0380016607.01.T03 | P52855 | 63.415 | 41 | 15 | 0 | 1 | 41 | 24 | 64 | 7.15E-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016607.01.T01 | G7J8Y6 | 98.198 | 111 | 1 | 1 | 1 | 111 | 1 | 110 | 7.11e-69 | 211 |
| MsG0380016607.01.T02 | G7J8Y6 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 3.90e-57 | 181 |
| MsG0380016607.01.T03 | G7J8Y6 | 98.571 | 70 | 1 | 0 | 1 | 70 | 24 | 93 | 5.23e-38 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000118.01 | MsG0380016607.01 | 0.836426 | 9.426371e-57 | 1.187500e-53 |
| MsG0180001169.01 | MsG0380016607.01 | 0.813372 | 2.645950e-51 | 1.724900e-48 |
| MsG0180003897.01 | MsG0380016607.01 | 0.841748 | 3.936749e-58 | 5.840156e-55 |
| MsG0180004829.01 | MsG0380016607.01 | 0.824378 | 8.340205e-54 | 7.374358e-51 |
| MsG0280011308.01 | MsG0380016607.01 | 0.844366 | 7.902684e-59 | 1.272854e-55 |
| MsG0380015857.01 | MsG0380016607.01 | 0.804710 | 1.895721e-49 | 9.843311e-47 |
| MsG0380016607.01 | MsG0380016622.01 | 0.816830 | 4.518125e-52 | 3.235893e-49 |
| MsG0380016607.01 | MsG0380016653.01 | 0.809103 | 2.232642e-50 | 1.299197e-47 |
| MsG0380016607.01 | MsG0380016678.01 | 0.801479 | 8.829960e-49 | 4.221280e-46 |
| MsG0380016607.01 | MsG0380016760.01 | 0.806715 | 7.190130e-50 | 3.930317e-47 |
| MsG0380016607.01 | MsG0480018164.01 | 0.807245 | 5.553532e-50 | 3.077837e-47 |
| MsG0380016607.01 | MsG0480021279.01 | 0.849363 | 3.393758e-60 | 6.418594e-57 |
| MsG0380016607.01 | MsG0480021417.01 | 0.803573 | 3.269074e-49 | 1.648576e-46 |
| MsG0380016607.01 | MsG0480022006.01 | 0.820797 | 5.673179e-53 | 4.533829e-50 |
| MsG0380016607.01 | MsG0480022789.01 | 0.824051 | 9.949750e-54 | 8.716102e-51 |
| MsG0380016607.01 | MsG0480023380.01 | 0.808165 | 3.541985e-50 | 2.010790e-47 |
| MsG0380016607.01 | MsG0480023774.01 | 0.831758 | 1.392138e-55 | 1.525315e-52 |
| MsG0380016607.01 | MsG0480023941.01 | 0.815424 | 9.310773e-52 | 6.416841e-49 |
| MsG0380016607.01 | MsG0480023970.01 | 0.803225 | 3.858754e-49 | 1.928485e-46 |
| MsG0380016607.01 | MsG0580024059.01 | 0.852783 | 3.679411e-61 | 7.775554e-58 |
| MsG0380016607.01 | MsG0580024481.01 | 0.820857 | 5.494434e-53 | 4.398639e-50 |
| MsG0380016607.01 | MsG0580024738.01 | 0.843200 | 1.621676e-58 | 2.518050e-55 |
| MsG0380016607.01 | MsG0580025750.01 | 0.807032 | 6.161939e-50 | 3.396070e-47 |
| MsG0380016607.01 | MsG0580030073.01 | 0.826331 | 2.875983e-54 | 2.688915e-51 |
| MsG0380016607.01 | MsG0680035611.01 | 0.802658 | 5.053200e-49 | 2.489167e-46 |
| MsG0380016607.01 | MsG0780037290.01 | 0.852011 | 6.104928e-61 | 1.258276e-57 |
| MsG0380016607.01 | MsG0780038383.01 | 0.834519 | 2.860572e-56 | 3.403137e-53 |
| MsG0380016607.01 | MsG0780040782.01 | 0.818225 | 2.190280e-52 | 1.629841e-49 |
| MsG0380016607.01 | MsG0780041522.01 | 0.845926 | 2.994771e-59 | 5.070185e-56 |
| MsG0380016607.01 | MsG0880042517.01 | 0.827284 | 1.702886e-54 | 1.636686e-51 |
| MsG0380016607.01 | MsG0880046220.01 | 0.835904 | 1.278763e-56 | 1.585713e-53 |
| MsG0380016607.01 | MsG0880046486.01 | 0.801544 | 8.566306e-49 | 4.101824e-46 |
| MsG0280006629.01 | MsG0380016607.01 | 0.820699 | 5.975973e-53 | 4.762627e-50 |
| MsG0280006747.01 | MsG0380016607.01 | 0.838499 | 2.774047e-57 | 3.722329e-54 |
| MsG0280007055.01 | MsG0380016607.01 | 0.838873 | 2.220194e-57 | 3.013443e-54 |
| MsG0280007995.01 | MsG0380016607.01 | 0.817272 | 3.594454e-52 | 2.605663e-49 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016607.01.T01 | MTR_3g092600 | 98.198 | 111 | 1 | 1 | 1 | 111 | 1 | 110 | 1.80e-72 | 211 |
| MsG0380016607.01.T01 | MTR_2g066750 | 97.297 | 111 | 2 | 1 | 1 | 111 | 1 | 110 | 6.16e-72 | 209 |
| MsG0380016607.01.T01 | MTR_8g024350 | 65.766 | 111 | 35 | 2 | 1 | 111 | 1 | 108 | 1.75e-33 | 112 |
| MsG0380016607.01.T01 | MTR_7g118060 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 1.03e-20 | 80.5 |
| MsG0380016607.01.T01 | MTR_7g005740 | 66.129 | 62 | 2 | 1 | 1 | 62 | 1 | 43 | 1.40e-19 | 79.3 |
| MsG0380016607.01.T02 | MTR_3g092600 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 9.90e-61 | 181 |
| MsG0380016607.01.T02 | MTR_2g066750 | 97.849 | 93 | 2 | 0 | 1 | 93 | 1 | 93 | 3.27e-60 | 180 |
| MsG0380016607.01.T02 | MTR_8g024350 | 68.493 | 73 | 22 | 1 | 1 | 73 | 1 | 72 | 2.27e-29 | 102 |
| MsG0380016607.01.T02 | MTR_7g118060 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 5.36e-21 | 80.9 |
| MsG0380016607.01.T02 | MTR_7g005740 | 66.129 | 62 | 2 | 1 | 1 | 62 | 1 | 43 | 1.89e-19 | 79.0 |
| MsG0380016607.01.T03 | MTR_3g092600 | 98.571 | 70 | 1 | 0 | 1 | 70 | 24 | 93 | 1.33e-41 | 132 |
| MsG0380016607.01.T03 | MTR_2g066750 | 97.143 | 70 | 2 | 0 | 1 | 70 | 24 | 93 | 3.97e-41 | 130 |
| MsG0380016607.01.T03 | MTR_8g024350 | 75.510 | 49 | 11 | 1 | 2 | 50 | 25 | 72 | 3.07e-18 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016607.01.T01 | AT5G24510 | 56.250 | 112 | 47 | 2 | 1 | 111 | 1 | 111 | 6.18e-37 | 121 |
| MsG0380016607.01.T01 | AT1G01100 | 60.185 | 108 | 43 | 0 | 4 | 111 | 5 | 112 | 1.56e-29 | 102 |
| MsG0380016607.01.T01 | AT1G01100 | 60.185 | 108 | 43 | 0 | 4 | 111 | 5 | 112 | 1.56e-29 | 102 |
| MsG0380016607.01.T01 | AT1G01100 | 60.185 | 108 | 43 | 0 | 4 | 111 | 5 | 112 | 1.56e-29 | 102 |
| MsG0380016607.01.T01 | AT5G47700 | 57.658 | 111 | 46 | 1 | 2 | 111 | 3 | 113 | 1.41e-28 | 100 |
| MsG0380016607.01.T01 | AT5G47700 | 57.658 | 111 | 46 | 1 | 2 | 111 | 3 | 113 | 1.41e-28 | 100 |
| MsG0380016607.01.T01 | AT1G01100 | 51.852 | 108 | 36 | 1 | 4 | 111 | 5 | 96 | 1.41e-27 | 97.4 |
| MsG0380016607.01.T01 | AT4G00810 | 55.046 | 109 | 48 | 1 | 4 | 111 | 5 | 113 | 2.32e-26 | 94.7 |
| MsG0380016607.01.T01 | AT4G00810 | 55.046 | 109 | 48 | 1 | 4 | 111 | 5 | 113 | 2.32e-26 | 94.7 |
| MsG0380016607.01.T02 | AT5G24510 | 58.889 | 90 | 32 | 2 | 1 | 86 | 1 | 89 | 1.82e-30 | 105 |
| MsG0380016607.01.T02 | AT5G47700 | 65.517 | 58 | 20 | 0 | 4 | 61 | 5 | 62 | 2.56e-23 | 87.0 |
| MsG0380016607.01.T02 | AT5G47700 | 65.517 | 58 | 20 | 0 | 4 | 61 | 5 | 62 | 2.56e-23 | 87.0 |
| MsG0380016607.01.T02 | AT1G01100 | 63.793 | 58 | 21 | 0 | 4 | 61 | 5 | 62 | 4.80e-23 | 85.9 |
| MsG0380016607.01.T02 | AT1G01100 | 63.793 | 58 | 21 | 0 | 4 | 61 | 5 | 62 | 8.00e-23 | 85.5 |
| MsG0380016607.01.T02 | AT1G01100 | 63.793 | 58 | 21 | 0 | 4 | 61 | 5 | 62 | 8.00e-23 | 85.5 |
| MsG0380016607.01.T02 | AT1G01100 | 63.793 | 58 | 21 | 0 | 4 | 61 | 5 | 62 | 8.00e-23 | 85.5 |
| MsG0380016607.01.T02 | AT4G00810 | 62.069 | 58 | 22 | 0 | 4 | 61 | 5 | 62 | 3.39e-22 | 84.0 |
| MsG0380016607.01.T02 | AT4G00810 | 62.069 | 58 | 22 | 0 | 4 | 61 | 5 | 62 | 3.39e-22 | 84.0 |
| MsG0380016607.01.T03 | AT5G24510 | 53.731 | 67 | 26 | 2 | 1 | 63 | 24 | 89 | 8.34e-17 | 69.3 |
| MsG0380016607.01.T03 | AT5G47700 | 65.789 | 38 | 13 | 0 | 1 | 38 | 25 | 62 | 4.63e-13 | 59.7 |
| MsG0380016607.01.T03 | AT5G47700 | 65.789 | 38 | 13 | 0 | 1 | 38 | 25 | 62 | 4.63e-13 | 59.7 |
| MsG0380016607.01.T03 | AT1G01100 | 63.158 | 38 | 14 | 0 | 1 | 38 | 25 | 62 | 1.17e-12 | 58.5 |
| MsG0380016607.01.T03 | AT1G01100 | 63.158 | 38 | 14 | 0 | 1 | 38 | 25 | 62 | 1.75e-12 | 58.2 |
| MsG0380016607.01.T03 | AT1G01100 | 63.158 | 38 | 14 | 0 | 1 | 38 | 25 | 62 | 1.75e-12 | 58.2 |
| MsG0380016607.01.T03 | AT1G01100 | 63.158 | 38 | 14 | 0 | 1 | 38 | 25 | 62 | 1.75e-12 | 58.2 |
| MsG0380016607.01.T03 | AT4G00810 | 60.526 | 38 | 15 | 0 | 1 | 38 | 25 | 62 | 6.84e-12 | 57.0 |
| MsG0380016607.01.T03 | AT4G00810 | 60.526 | 38 | 15 | 0 | 1 | 38 | 25 | 62 | 6.84e-12 | 57.0 |
Find 30 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAAAACAAAACAAGTTT+TGG | 0.254235 | 3:+85660289 | None:intergenic |
| TTCCCGCATCAGATGTAAAA+TGG | 0.280734 | 3:+85660153 | None:intergenic |
| GTCATCGTCACTTTCTTCCT+TGG | 0.329724 | 3:+85660394 | None:intergenic |
| ACGTCACCGTTGAATCTTAC+TGG | 0.348075 | 3:-85661501 | MsG0380016607.01.T01:CDS |
| TAGTTTGTTGTAGCCAGATT+AGG | 0.371827 | 3:-85660336 | MsG0380016607.01.T01:three_prime_UTR |
| CCTTGAAAGGAGTCCTAATC+TGG | 0.373967 | 3:+85660323 | None:intergenic |
| CCAGATTAGGACTCCTTTCA+AGG | 0.391998 | 3:-85660323 | MsG0380016607.01.T01:three_prime_UTR |
| TCTGAGCAAGCTTAGCGAAT+AGG | 0.392998 | 3:+85661473 | None:intergenic |
| GCCGTATCTGCACCCGCTGC+TGG | 0.401410 | 3:-85661394 | MsG0380016607.01.T01:CDS |
| TCTGCACCCGCTGCTGGTGG+TGG | 0.439771 | 3:-85661388 | MsG0380016607.01.T01:CDS |
| GCGGCTCCACCACCAGCAGC+GGG | 0.451994 | 3:+85661382 | None:intergenic |
| GAAGATCGGTACTTTGTTGA+AGG | 0.461021 | 3:-85661530 | MsG0380016607.01.T01:CDS |
| ACCTGCCGCCGTTGAAAAGA+AGG | 0.476631 | 3:-85661347 | MsG0380016607.01.T01:CDS |
| TGCGGCTCCACCACCAGCAG+CGG | 0.489051 | 3:+85661381 | None:intergenic |
| TTGAACTCCGGCGCTGTTGG+TGG | 0.510539 | 3:-85661427 | MsG0380016607.01.T01:CDS |
| GGAAGAAAGTGACGATGACA+TGG | 0.523361 | 3:-85660390 | MsG0380016607.01.T01:CDS |
| AGCGGCACCACCAACAGCGC+CGG | 0.527844 | 3:+85661420 | None:intergenic |
| ACCAGCAGCGGGTGCAGATA+CGG | 0.530473 | 3:+85661393 | None:intergenic |
| GGATTCAGCCACTCCTTGAA+AGG | 0.532068 | 3:+85660310 | None:intergenic |
| GCAAGCTTAGCGAATAGGCT+TGG | 0.542190 | 3:+85661478 | None:intergenic |
| TTTGTTTAGGCGGAGAAGAT+CGG | 0.543289 | 3:-85661544 | MsG0380016607.01.T01:intron |
| GGCAGGTTCGGCAGCTGCTG+CGG | 0.548908 | 3:+85661363 | None:intergenic |
| TTAGGACTCCTTTCAAGGAG+TGG | 0.585485 | 3:-85660318 | MsG0380016607.01.T01:three_prime_UTR |
| AAAATCTTTCAAAATTAACC+TGG | 0.590654 | 3:+85660121 | None:intergenic |
| GTATCTGCACCCGCTGCTGG+TGG | 0.603091 | 3:-85661391 | MsG0380016607.01.T01:CDS |
| ATGCGGGAATATATCATACC+AGG | 0.604298 | 3:-85660139 | MsG0380016607.01.T01:three_prime_UTR |
| GCTTGGCCAGTAAGATTCAA+CGG | 0.629260 | 3:+85661495 | None:intergenic |
| GTGTTTGTAGGAGGAAGCCA+AGG | 0.654949 | 3:-85660411 | MsG0380016607.01.T01:intron |
| GGGTGCAGATACGGCAACAG+CGG | 0.665524 | 3:+85661402 | None:intergenic |
| GAAGAAAGTGACGATGACAT+GGG | 0.678372 | 3:-85660389 | MsG0380016607.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATATGTTTTTATCTTA+AGG | + | Chr3:85660689-85660708 | None:intergenic | 10.0% |
| !! | AATTGTATTGAAATTAGAAA+CGG | - | Chr3:85660590-85660609 | MsG0380016607.01.T01:intron | 15.0% |
| !! | TATAAAAGATATAATTTCCT+CGG | - | Chr3:85660812-85660831 | MsG0380016607.01.T01:intron | 15.0% |
| !!! | CTCATTTTATTGTTAAATTT+TGG | - | Chr3:85661604-85661623 | MsG0380016607.01.T01:intron | 15.0% |
| !!! | TTATAAAACAAAACAAGTTT+TGG | + | Chr3:85661549-85661568 | None:intergenic | 15.0% |
| !!! | TTTTCATGCAAAATAATTTT+TGG | + | Chr3:85660883-85660902 | None:intergenic | 15.0% |
| !! | AAAGTAAAAAATGTGGATAT+AGG | + | Chr3:85661252-85661271 | None:intergenic | 20.0% |
| !! | AAGTAAAAAATGTGGATATA+GGG | + | Chr3:85661251-85661270 | None:intergenic | 20.0% |
| !!! | AATTGTTGTTTTTCTTCATT+GGG | - | Chr3:85660962-85660981 | MsG0380016607.01.T01:intron | 20.0% |
| !!! | ATATCCACATTTTTTACTTT+TGG | - | Chr3:85661252-85661271 | MsG0380016607.01.T01:intron | 20.0% |
| !!! | ATGAAAACATGTAGTTATTT+TGG | - | Chr3:85660920-85660939 | MsG0380016607.01.T01:intron | 20.0% |
| !!! | ATTTTTCTTTTGTTACTGTT+TGG | - | Chr3:85660261-85660280 | MsG0380016607.01.T01:three_prime_UTR | 20.0% |
| !!! | TAATTGTTGTTTTTCTTCAT+TGG | - | Chr3:85660961-85660980 | MsG0380016607.01.T01:intron | 20.0% |
| !!! | TATCCACATTTTTTACTTTT+GGG | - | Chr3:85661253-85661272 | MsG0380016607.01.T01:intron | 20.0% |
| !!! | TTTTTCTTTTGTTACTGTTT+GGG | - | Chr3:85660262-85660281 | MsG0380016607.01.T01:three_prime_UTR | 20.0% |
| ! | GACAACTCTGAATATAATTA+TGG | - | Chr3:85661012-85661031 | MsG0380016607.01.T01:intron | 25.0% |
| ! | TTAAATAAGCCAATCATAAC+TGG | - | Chr3:85661225-85661244 | MsG0380016607.01.T01:intron | 25.0% |
| !! | AAACAATACCTTCTTTTCAA+CGG | + | Chr3:85660499-85660518 | None:intergenic | 25.0% |
| !!! | ATAAAGTTAACTTGTTTTCC+TGG | - | Chr3:85661142-85661161 | MsG0380016607.01.T01:intron | 25.0% |
| !!! | TAAAGTTAACTTGTTTTCCT+GGG | - | Chr3:85661143-85661162 | MsG0380016607.01.T01:intron | 25.0% |
| AAAAGATATAATTTCCTCGG+AGG | - | Chr3:85660815-85660834 | MsG0380016607.01.T01:intron | 30.0% | |
| AAAGATATAATTTCCTCGGA+GGG | - | Chr3:85660816-85660835 | MsG0380016607.01.T01:intron | 30.0% | |
| AATGTAAGCTTATGCATAAG+TGG | + | Chr3:85661097-85661116 | None:intergenic | 30.0% | |
| AGATGCAAGTTCTACAAAAT+AGG | + | Chr3:85660789-85660808 | None:intergenic | 30.0% | |
| ATAATAGACTTACGGTGATT+GGG | + | Chr3:85660194-85660213 | None:intergenic | 30.0% | |
| ATGTAAGCTTATGCATAAGT+GGG | + | Chr3:85661096-85661115 | None:intergenic | 30.0% | |
| CAGCAAATGACAGTATTTAT+CGG | + | Chr3:85660852-85660871 | None:intergenic | 30.0% | |
| GAAGAGAGATAATAGACTTA+CGG | + | Chr3:85660202-85660221 | None:intergenic | 30.0% | |
| TATTCAGAGTTGTCTTGAAA+AGG | + | Chr3:85661006-85661025 | None:intergenic | 30.0% | |
| TCACCCAAAAGTAAAAAATG+TGG | + | Chr3:85661259-85661278 | None:intergenic | 30.0% | |
| TGTTAAATGAATGCTAGTTC+TGG | - | Chr3:85660638-85660657 | MsG0380016607.01.T01:intron | 30.0% | |
| TTTGTTTAGTGACACTGTTT+GGG | + | Chr3:85661198-85661217 | None:intergenic | 30.0% | |
| ! | ATTCCATTTTACATCTGATG+CGG | - | Chr3:85661679-85661698 | MsG0380016607.01.T01:CDS | 30.0% |
| ! | ATTTTGTAGAACTTGCATCT+AGG | - | Chr3:85660789-85660808 | MsG0380016607.01.T01:intron | 30.0% |
| ! | GTAATGATGAGTTACTGATT+TGG | - | Chr3:85660561-85660580 | MsG0380016607.01.T01:intron | 30.0% |
| AAATGAGATCTATGAGCGAT+TGG | + | Chr3:85660245-85660264 | None:intergenic | 35.0% | |
| AAGATATAATTTCCTCGGAG+GGG | - | Chr3:85660817-85660836 | MsG0380016607.01.T01:intron | 35.0% | |
| AATGAGATCTATGAGCGATT+GGG | + | Chr3:85660244-85660263 | None:intergenic | 35.0% | |
| CGATTGGGAGATTATAGAAA+TGG | + | Chr3:85660229-85660248 | None:intergenic | 35.0% | |
| CTTCATTGGGATTTGAGAAT+TGG | - | Chr3:85660975-85660994 | MsG0380016607.01.T01:intron | 35.0% | |
| GATAATAGACTTACGGTGAT+TGG | + | Chr3:85660195-85660214 | None:intergenic | 35.0% | |
| GTTTGTTTAGTGACACTGTT+TGG | + | Chr3:85661199-85661218 | None:intergenic | 35.0% | |
| TCATTCCATACTGTGTTTGT+AGG | - | Chr3:85661412-85661431 | MsG0380016607.01.T01:CDS | 35.0% | |
| ! | ATTTTGTGCTGTGATCAAGT+TGG | - | Chr3:85660756-85660775 | MsG0380016607.01.T01:intron | 35.0% |
| ! | TCTTTTGTTACTGTTTGGGT+TGG | - | Chr3:85660266-85660285 | MsG0380016607.01.T01:three_prime_UTR | 35.0% |
| ! | TTCCATTTTACATCTGATGC+GGG | - | Chr3:85661680-85661699 | MsG0380016607.01.T01:CDS | 35.0% |
| ! | TTTTGTGCTGTGATCAAGTT+GGG | - | Chr3:85660757-85660776 | MsG0380016607.01.T01:intron | 35.0% |
| !! | TAGTTTGTTGTAGCCAGATT+AGG | - | Chr3:85661499-85661518 | MsG0380016607.01.T01:CDS | 35.0% |
| !!! | GTTTGGGTTGGTTTTTGTTT+AGG | - | Chr3:85660278-85660297 | MsG0380016607.01.T01:three_prime_UTR | 35.0% |
| ATCAACAAGACAATCTTCCC+AGG | + | Chr3:85661163-85661182 | None:intergenic | 40.0% | |
| ATGCGGGAATATATCATACC+AGG | - | Chr3:85661696-85661715 | MsG0380016607.01.T01:CDS | 40.0% | |
| GAAGAAAGTGACGATGACAT+GGG | - | Chr3:85661446-85661465 | MsG0380016607.01.T01:CDS | 40.0% | |
| GAAGATCGGTACTTTGTTGA+AGG | - | Chr3:85660305-85660324 | MsG0380016607.01.T01:three_prime_UTR | 40.0% | |
| GATATAGGGCCAGTTATGAT+TGG | + | Chr3:85661237-85661256 | None:intergenic | 40.0% | |
| TTCCATACTGTGTTTGTAGG+AGG | - | Chr3:85661415-85661434 | MsG0380016607.01.T01:CDS | 40.0% | |
| TTCCCGCATCAGATGTAAAA+TGG | + | Chr3:85661685-85661704 | None:intergenic | 40.0% | |
| TTCCTCCTACAAACACAGTA+TGG | + | Chr3:85661420-85661439 | None:intergenic | 40.0% | |
| TTTGTTTAGGCGGAGAAGAT+CGG | - | Chr3:85660291-85660310 | MsG0380016607.01.T01:three_prime_UTR | 40.0% | |
| ! | CAATACCTTCTTTTCAACGG+CGG | + | Chr3:85660496-85660515 | None:intergenic | 40.0% |
| ! | TTTGTGCTGTGATCAAGTTG+GGG | - | Chr3:85660758-85660777 | MsG0380016607.01.T01:intron | 40.0% |
| !! | GATGATCTCGTTTTGAACTC+CGG | - | Chr3:85660396-85660415 | MsG0380016607.01.T01:CDS | 40.0% |
| !!! | TGGGTTGGTTTTTGTTTAGG+CGG | - | Chr3:85660281-85660300 | MsG0380016607.01.T01:three_prime_UTR | 40.0% |
| ACGTCACCGTTGAATCTTAC+TGG | - | Chr3:85660334-85660353 | MsG0380016607.01.T01:three_prime_UTR | 45.0% | |
| CCAGATTAGGACTCCTTTCA+AGG | - | Chr3:85661512-85661531 | MsG0380016607.01.T01:CDS | 45.0% | |
| CCTTGAAAGGAGTCCTAATC+TGG | + | Chr3:85661515-85661534 | None:intergenic | 45.0% | |
| GCTTGGCCAGTAAGATTCAA+CGG | + | Chr3:85660343-85660362 | None:intergenic | 45.0% | |
| GGAAGAAAGTGACGATGACA+TGG | - | Chr3:85661445-85661464 | MsG0380016607.01.T01:CDS | 45.0% | |
| TCTGAGCAAGCTTAGCGAAT+AGG | + | Chr3:85660365-85660384 | None:intergenic | 45.0% | |
| TTAGGACTCCTTTCAAGGAG+TGG | - | Chr3:85661517-85661536 | MsG0380016607.01.T01:CDS | 45.0% | |
| ! | GTCATCGTCACTTTCTTCCT+TGG | + | Chr3:85661444-85661463 | None:intergenic | 45.0% |
| GCAAGCTTAGCGAATAGGCT+TGG | + | Chr3:85660360-85660379 | None:intergenic | 50.0% | |
| GGATTCAGCCACTCCTTGAA+AGG | + | Chr3:85661528-85661547 | None:intergenic | 50.0% | |
| GTAAATGCAGCCCAATTCGC+CGG | + | Chr3:85660142-85660161 | None:intergenic | 50.0% | |
| GTGTTTGTAGGAGGAAGCCA+AGG | - | Chr3:85661424-85661443 | MsG0380016607.01.T01:CDS | 50.0% | |
| TGATTGGGATTCCATCGTCG+TGG | + | Chr3:85660179-85660198 | None:intergenic | 50.0% | |
| ACCTGCCGCCGTTGAAAAGA+AGG | - | Chr3:85660488-85660507 | MsG0380016607.01.T01:intron | 55.0% | |
| ACCTTGATCCTCCACGACGA+TGG | - | Chr3:85660165-85660184 | MsG0380016607.01.T01:three_prime_UTR | 55.0% | |
| ATCGTCGTGGAGGATCAAGG+TGG | + | Chr3:85660166-85660185 | None:intergenic | 55.0% | |
| TCCATCGTCGTGGAGGATCA+AGG | + | Chr3:85660169-85660188 | None:intergenic | 55.0% | |
| TTGGGATTCCATCGTCGTGG+AGG | + | Chr3:85660176-85660195 | None:intergenic | 55.0% | |
| ! | ACCTTCTTTTCAACGGCGGC+AGG | + | Chr3:85660492-85660511 | None:intergenic | 55.0% |
| ! | CTTTTCAACGGCGGCAGGTT+CGG | + | Chr3:85660487-85660506 | None:intergenic | 55.0% |
| !! | GTTTTGAACTCCGGCGCTGT+TGG | - | Chr3:85660405-85660424 | MsG0380016607.01.T01:intron | 55.0% |
| ACCAGCAGCGGGTGCAGATA+CGG | + | Chr3:85660445-85660464 | None:intergenic | 60.0% | |
| CGGATACAGAATCCCCTCCG+AGG | + | Chr3:85660832-85660851 | None:intergenic | 60.0% | |
| GGGTGCAGATACGGCAACAG+CGG | + | Chr3:85660436-85660455 | None:intergenic | 60.0% | |
| TTGAACTCCGGCGCTGTTGG+TGG | - | Chr3:85660408-85660427 | MsG0380016607.01.T01:intron | 60.0% | |
| GTATCTGCACCCGCTGCTGG+TGG | - | Chr3:85660444-85660463 | MsG0380016607.01.T01:intron | 65.0% | |
| AGCGGCACCACCAACAGCGC+CGG | + | Chr3:85660418-85660437 | None:intergenic | 70.0% | |
| GCCGTATCTGCACCCGCTGC+TGG | - | Chr3:85660441-85660460 | MsG0380016607.01.T01:intron | 70.0% | |
| GGCAGGTTCGGCAGCTGCTG+CGG | + | Chr3:85660475-85660494 | None:intergenic | 70.0% | |
| TCTGCACCCGCTGCTGGTGG+TGG | - | Chr3:85660447-85660466 | MsG0380016607.01.T01:intron | 70.0% | |
| TGCGGCTCCACCACCAGCAG+CGG | + | Chr3:85660457-85660476 | None:intergenic | 70.0% | |
| GCGGCTCCACCACCAGCAGC+GGG | + | Chr3:85660456-85660475 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 85660132 | 85661725 | 85660132 | ID=MsG0380016607.01;Name=MsG0380016607.01 |
| Chr3 | mRNA | 85660132 | 85661725 | 85660132 | ID=MsG0380016607.01.T01;Parent=MsG0380016607.01;Name=MsG0380016607.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.66|1|0.5|0.33|3|238|111 |
| Chr3 | exon | 85660132 | 85660423 | 85660132 | ID=MsG0380016607.01.T01:exon:33724;Parent=MsG0380016607.01.T01 |
| Chr3 | exon | 85661345 | 85661557 | 85661345 | ID=MsG0380016607.01.T01:exon:33723;Parent=MsG0380016607.01.T01 |
| Chr3 | CDS | 85661657 | 85661725 | 85661657 | ID=MsG0380016607.01.T01:cds;Parent=MsG0380016607.01.T01 |
| Chr3 | CDS | 85661345 | 85661557 | 85661345 | ID=MsG0380016607.01.T01:cds;Parent=MsG0380016607.01.T01 |
| Chr3 | CDS | 85660370 | 85660423 | 85660370 | ID=MsG0380016607.01.T01:cds;Parent=MsG0380016607.01.T01 |
| Chr3 | three_prime_UTR | 85660132 | 85660369 | 85660132 | ID=MsG0380016607.01.T01:three_prime_utr;Parent=MsG0380016607.01.T01 |
| Chr3 | mRNA | 85661303 | 85661725 | 85661303 | ID=MsG0380016607.01.T02;Parent=MsG0380016607.01;Name=MsG0380016607.01.T02;_AED=0.50;_eAED=0.51;_QI=0|1|0.5|1|1|1|2|0|107 |
| Chr3 | CDS | 85661657 | 85661725 | 85661657 | ID=MsG0380016607.01.T02:cds;Parent=MsG0380016607.01.T02 |
| Chr3 | CDS | 85661303 | 85661557 | 85661303 | ID=MsG0380016607.01.T02:cds;Parent=MsG0380016607.01.T02 |
| Chr3 | mRNA | 85661303 | 85661557 | 85661303 | ID=MsG0380016607.01.T03;Parent=MsG0380016607.01;Name=MsG0380016607.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|84 |
| Chr3 | CDS | 85661303 | 85661557 | 85661303 | ID=MsG0380016607.01.T03:cds;Parent=MsG0380016607.01.T03 |
| Gene Sequence |
| Protein sequence |
