AlfalfaGEDB | MsG0580024481.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024481.01

KEGG: K02953
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00312 PF08069

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024481.01.T01	XP_003611248.1	100	119	0	0	27	145	33	151	4.04E-79	241

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024481.01.T01	P46298	99.16	119	1	0	27	145	33	151	2.69E-80	236

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024481.01.T01	G7KG78	100.000	119	0	0	27	145	33	151	1.93e-79	241

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048040.01	MsG0580024481.01	0.854215	1.427415e-61	3.165096e-58
MsG0080048922.01	MsG0580024481.01	0.852468	4.524939e-61	9.464144e-58
MsG0080048933.01	MsG0580024481.01	0.817384	3.391604e-52	2.466391e-49
MsG0180000096.01	MsG0580024481.01	0.872504	3.023170e-67	1.268303e-63
MsG0180000118.01	MsG0580024481.01	0.877547	5.758858e-69	2.906718e-65
MsG0180001169.01	MsG0580024481.01	0.834553	2.804846e-56	3.340249e-53
MsG0180001829.01	MsG0580024481.01	0.847958	8.315513e-60	1.502673e-56
MsG0180003897.01	MsG0580024481.01	0.869028	4.208012e-66	1.555459e-62
MsG0180004064.01	MsG0580024481.01	0.813705	2.235897e-51	1.470771e-48
MsG0180004609.01	MsG0580024481.01	0.804563	2.034813e-49	1.052505e-46
MsG0180004829.01	MsG0580024481.01	0.865126	7.402304e-65	2.381788e-61
MsG0180005384.01	MsG0580024481.01	0.885649	6.778397e-72	4.690411e-68
MsG0180005573.01	MsG0580024481.01	0.866457	2.811340e-65	9.481558e-62
MsG0280006301.01	MsG0580024481.01	0.809495	1.840017e-50	1.081931e-47
MsG0380012367.01	MsG0580024481.01	0.815745	7.897124e-52	5.491118e-49
MsG0480019165.01	MsG0580024481.01	0.883069	6.125324e-71	3.825633e-67
MsG0480019632.01	MsG0580024481.01	0.839716	1.341240e-57	1.868015e-54
MsG0480020796.01	MsG0580024481.01	0.848519	5.821412e-60	1.071199e-56
MsG0480020895.01	MsG0580024481.01	0.815243	1.021669e-51	7.005764e-49
MsG0480020911.01	MsG0580024481.01	0.849443	3.222703e-60	6.110191e-57
MsG0480021279.01	MsG0580024481.01	0.848913	4.526138e-60	8.435758e-57
MsG0480021417.01	MsG0580024481.01	0.832002	1.211617e-55	1.337029e-52
MsG0480022006.01	MsG0580024481.01	0.862004	6.888103e-64	1.986536e-60
MsG0480022038.01	MsG0580024481.01	0.815486	9.020989e-52	6.228131e-49
MsG0480022041.01	MsG0580024481.01	0.803675	3.113582e-49	1.574124e-46
MsG0480022302.01	MsG0580024481.01	0.803318	3.691058e-49	1.849079e-46
MsG0480022363.01	MsG0580024481.01	0.825443	4.674606e-54	4.261125e-51
MsG0480022789.01	MsG0580024481.01	0.835205	1.921396e-56	2.333336e-53
MsG0480022955.01	MsG0580024481.01	0.801515	8.684232e-49	4.155277e-46
MsG0480023380.01	MsG0580024481.01	0.846509	2.077577e-59	3.584420e-56
MsG0480023774.01	MsG0580024481.01	0.896602	3.150212e-76	3.432603e-72
MsG0480023931.01	MsG0580024481.01	0.800188	1.620356e-48	7.497001e-46
MsG0480023941.01	MsG0580024481.01	0.825788	3.872091e-54	3.564919e-51
MsG0480023970.01	MsG0580024481.01	0.823250	1.532245e-53	1.312261e-50
MsG0480023996.01	MsG0580024481.01	0.831286	1.819701e-55	1.965680e-52
MsG0580024059.01	MsG0580024481.01	0.853957	1.694412e-61	3.725096e-58
MsG0580024481.01	MsG0580024540.01	0.857324	1.764332e-62	4.337834e-59
MsG0580024481.01	MsG0580024738.01	0.857714	1.352112e-62	3.368178e-59
MsG0580024481.01	MsG0580024894.01	0.835810	1.351245e-56	1.670781e-53
MsG0580024481.01	MsG0580025073.01	0.824749	6.818610e-54	6.094671e-51
MsG0580024481.01	MsG0580025750.01	0.868446	6.489621e-66	2.347901e-62
MsG0580024481.01	MsG0580029702.01	0.808492	3.015953e-50	1.726908e-47
MsG0580024481.01	MsG0580030073.01	0.857632	1.430495e-62	3.553798e-59
MsG0580024481.01	MsG0680031368.01	0.835728	1.417338e-56	1.748347e-53
MsG0580024481.01	MsG0680035611.01	0.823878	1.092900e-53	9.528286e-51
MsG0580024481.01	MsG0680035905.01	0.800124	1.669539e-48	7.712142e-46
MsG0580024481.01	MsG0780036015.01	0.814362	1.601113e-51	1.072110e-48
MsG0580024481.01	MsG0780037290.01	0.807660	4.535976e-50	2.540958e-47
MsG0580024481.01	MsG0780038383.01	0.835797	1.361212e-56	1.682510e-53
MsG0580024481.01	MsG0780040782.01	0.805352	1.391324e-49	7.344574e-47
MsG0580024481.01	MsG0780041058.01	0.807811	4.212669e-50	2.369237e-47
MsG0580024481.01	MsG0780041240.01	0.858351	8.742462e-63	2.224622e-59
MsG0580024481.01	MsG0780041522.01	0.861115	1.287204e-63	3.601760e-60
MsG0580024481.01	MsG0780041790.01	0.831496	1.615268e-55	1.755856e-52
MsG0580024481.01	MsG0880041941.01	0.838504	2.765755e-57	3.711715e-54
MsG0580024481.01	MsG0880042517.01	0.841024	6.106240e-58	8.856476e-55
MsG0580024481.01	MsG0880043076.01	0.829148	6.052039e-55	6.141443e-52
MsG0580024481.01	MsG0880045836.01	0.871956	4.600921e-67	1.890717e-63
MsG0580024481.01	MsG0880046220.01	0.885999	5.007088e-72	3.512311e-68
MsG0580024481.01	MsG0880046236.01	0.807594	4.683578e-50	2.619099e-47
MsG0580024481.01	MsG0880047146.01	0.834310	3.228041e-56	3.816242e-53
MsG0580024481.01	MsG0880047310.01	0.824430	8.104653e-54	7.176800e-51
MsG0580024481.01	MsG0880047779.01	0.826724	2.318577e-54	2.192098e-51
MsG0380015402.01	MsG0580024481.01	0.807907	4.018686e-50	2.265715e-47
MsG0380015857.01	MsG0580024481.01	0.881858	1.692153e-70	1.007570e-66
MsG0380016607.01	MsG0580024481.01	0.820857	5.494434e-53	4.398639e-50
MsG0380016622.01	MsG0580024481.01	0.805176	1.514807e-49	7.960407e-47
MsG0380016678.01	MsG0580024481.01	0.859640	3.596791e-63	9.565266e-60
MsG0380016744.01	MsG0580024481.01	0.821264	4.428201e-53	3.584972e-50
MsG0380016760.01	MsG0580024481.01	0.849657	2.808637e-60	5.362533e-57
MsG0480018164.01	MsG0580024481.01	0.897445	1.396597e-76	1.578095e-72
MsG0280006629.01	MsG0580024481.01	0.844821	5.961719e-59	9.741802e-56
MsG0280006664.01	MsG0580024481.01	0.807275	5.472231e-50	3.035142e-47
MsG0280006717.01	MsG0580024481.01	0.803046	4.201903e-49	2.090345e-46
MsG0280006747.01	MsG0580024481.01	0.878836	2.033295e-69	1.077313e-65
MsG0280007055.01	MsG0580024481.01	0.900959	4.343129e-78	5.740519e-74
MsG0280007084.01	MsG0580024481.01	0.813275	2.778968e-51	1.806724e-48
MsG0280007995.01	MsG0580024481.01	0.831747	1.401129e-55	1.534620e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024481.01.T01	MTR_5g011910	100.000	119	0	27	145	33	151	4.90e-83	241
MsG0580024481.01.T01	MTR_4g024550	98.319	119	2	27	145	33	151	4.54e-82	238
MsG0580024481.01.T01	MTR_4g102170	97.479	119	3	27	145	33	151	6.66e-81	235
MsG0580024481.01.T01	MTR_4g024265	97.531	81	2	27	107	33	113	7.31e-51	167

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024481.01.T01	AT4G00100	97.479	119	3	0	27	145	33	151	3.38e-81	236
MsG0580024481.01.T01	AT3G60770	97.479	119	3	0	27	145	33	151	3.69e-81	236

Find 51 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCTCATTCTTCATGCTTTC+CGG	0.179180	5:+5457627	MsG0580024481.01.T01:three_prime_UTR
GCTCAGGTCAAGAGCGTTAC+TGG	0.313027	5:+5455422	MsG0580024481.01.T01:CDS
GAAGAATGTTGAATTGAGAT+TGG	0.340958	5:-5455123	None:intergenic
GTGCAGCAACCCTCTGTTAC+CGG	0.381872	5:-5457646	None:intergenic
TGGTTGCTTAGAGCTTTGTA+TGG	0.383561	5:+5457605	MsG0580024481.01.T01:exon
GGTTTCAATCCGCAAGCATT+TGG	0.402835	5:+5456200	MsG0580024481.01.T01:CDS
GTAACAGAGGGTTGCTGCAC+TGG	0.405636	5:+5457649	MsG0580024481.01.T01:three_prime_UTR
AGGTTTATCTAGAGACTTGA+TGG	0.413371	5:+5457692	MsG0580024481.01.T01:three_prime_UTR
TACCATGAGCTTTGAGGATA+CGG	0.414641	5:-5455457	None:intergenic
CACGAAGAATAACACCGATC+TGG	0.418817	5:-5455385	None:intergenic
TATTTGCAAGTTTGCTAAGA+AGG	0.425487	5:+5455349	MsG0580024481.01.T01:CDS
AAACCGCCTTCTTTATCAAA+TGG	0.432414	5:-5456182	None:intergenic
AACAAGGATGAGTCTGAACT+TGG	0.451307	5:-5456247	None:intergenic
GAGAGATACCATGAGCTTTG+AGG	0.453188	5:-5455463	None:intergenic
TGTTGAATTGAGATTGGAAG+AGG	0.466925	5:-5455117	None:intergenic
TGATTCTCACGGCATTGCTC+AGG	0.468082	5:+5455406	MsG0580024481.01.T01:CDS
TACAGATCCTCGGGAATCTC+AGG	0.472902	5:-5456159	None:intergenic
GGTTGCTTAGAGCTTTGTAT+GGG	0.486163	5:+5457606	MsG0580024481.01.T01:exon
ATCAAATGGTACAGATCCTC+GGG	0.499985	5:-5456168	None:intergenic
TGTTCCTCTCCAAATGCTTG+CGG	0.511208	5:-5456209	None:intergenic
ACGAAGAATAACACCGATCT+GGG	0.513161	5:-5455384	None:intergenic
TATCAAATGGTACAGATCCT+CGG	0.516683	5:-5456169	None:intergenic
ATATCTTTCTACTTTATCAA+AGG	0.517054	5:-5457743	None:intergenic
AAATCTTACTACTTCCAGAC+AGG	0.518633	5:-5456324	None:intergenic
ATTTGCAAGTTTGCTAAGAA+GGG	0.526647	5:+5455350	MsG0580024481.01.T01:CDS
ATCAACAACTGCCAGCACTT+TGG	0.526669	5:+5457585	MsG0580024481.01.T01:CDS
CCTTACTGAAATCAAATCAA+TGG	0.526963	5:-5455170	None:intergenic
TAACAAAATAAGAAATTGCA+TGG	0.540677	5:-5457716	None:intergenic
TCTGTACCATTTGATAAAGA+AGG	0.540683	5:+5456176	MsG0580024481.01.T01:CDS
GTTATTCTTCGTGATTCTCA+CGG	0.549125	5:+5455395	MsG0580024481.01.T01:CDS
GCTCTAAGCAACCAAAGTGC+TGG	0.550593	5:-5457596	None:intergenic
GGTTTGACTCCTTCCCAGAT+CGG	0.553356	5:+5455371	MsG0580024481.01.T01:CDS
CTCCGTATCCTCAAAGCTCA+TGG	0.554838	5:+5455455	MsG0580024481.01.T01:CDS
TGCTGCACTGGCAATCTGCA+AGG	0.555960	5:+5457661	MsG0580024481.01.T01:three_prime_UTR
TCATGCTTTCCGGTAACAGA+GGG	0.562108	5:+5457637	MsG0580024481.01.T01:three_prime_UTR
TGAGAGAAAATAAATTGAAG+AGG	0.564390	5:-5455145	None:intergenic
CAATCCGCAAGCATTTGGAG+AGG	0.603826	5:+5456205	MsG0580024481.01.T01:CDS
GGTTTATCTAGAGACTTGAT+GGG	0.612983	5:+5457693	MsG0580024481.01.T01:three_prime_UTR
AGAATAACACCGATCTGGGA+AGG	0.617486	5:-5455380	None:intergenic
GTACCATTTGATAAAGAAGG+CGG	0.628741	5:+5456179	MsG0580024481.01.T01:CDS
TGTAATAGCGAGCAAGACGG+TGG	0.633533	5:-5456281	None:intergenic
TTCATGCTTTCCGGTAACAG+AGG	0.633583	5:+5457636	MsG0580024481.01.T01:three_prime_UTR
GGTGGATTCTGCTCTCAACA+AGG	0.636755	5:-5456263	None:intergenic
GCATTTGGAGAGGAACAGAA+AGG	0.640840	5:+5456215	MsG0580024481.01.T01:CDS
CATGAGCTTTGAGGATACGG+AGG	0.661685	5:-5455454	None:intergenic
TCTTACTACTTCCAGACAGG+GGG	0.663544	5:-5456321	None:intergenic
ATCTTACTACTTCCAGACAG+GGG	0.663935	5:-5456322	None:intergenic
TCTTGTAATAGCGAGCAAGA+CGG	0.678094	5:-5456284	None:intergenic
GGAGAGGAACAGAAAGGACA+AGG	0.687113	5:+5456221	MsG0580024481.01.T01:CDS
AATCTTACTACTTCCAGACA+GGG	0.689024	5:-5456323	None:intergenic
ACTTGCACCTGAGATTCCCG+AGG	0.712102	5:+5456152	MsG0580024481.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATTAAATAGAAATGTTTA+AGG	+	Chr5:5455698-5455717	MsG0580024481.01.T01:intron	10.0%
!!	ATTAAATTATTTATTCAAAC+AGG	-	Chr5:5455494-5455513	None:intergenic	10.0%
!!	TATTAAATAGAAATGTTTAA+GGG	+	Chr5:5455699-5455718	MsG0580024481.01.T01:intron	10.0%
!!	TTAAATTATTTATTCAAACA+GGG	-	Chr5:5455493-5455512	None:intergenic	10.0%
!!!	AGAATTTCATATTTAAAATT+TGG	-	Chr5:5455726-5455745	None:intergenic	10.0%
!!!	CATTTCTATTTAATATTTTT+TGG	-	Chr5:5455694-5455713	None:intergenic	10.0%
!!	AAATTTAACTAATGCATTAT+GGG	+	Chr5:5456822-5456841	MsG0580024481.01.T01:intron	15.0%
!!	TAAATTTAACTAATGCATTA+TGG	+	Chr5:5456821-5456840	MsG0580024481.01.T01:intron	15.0%
!!	TAATGCATTAGTTAAATTTA+TGG	-	Chr5:5456821-5456840	None:intergenic	15.0%
!!!	TTATATTTTGAATTTGTTTC+AGG	+	Chr5:5455316-5455335	MsG0580024481.01.T01:intron	15.0%
!!!	TTTTTAAAATAGATGAAAAG+CGG	+	Chr5:5456969-5456988	MsG0580024481.01.T01:intron	15.0%
!!	AAAAAAAGTAGATAATGTTG+AGG	+	Chr5:5456073-5456092	MsG0580024481.01.T01:intron	20.0%
!!	AACAGAGTAAACAATATAAT+TGG	-	Chr5:5457158-5457177	None:intergenic	20.0%
!!	AGCAATTTATATCAAAGTAA+TGG	-	Chr5:5457210-5457229	None:intergenic	20.0%
!!	ATATCTTTCTACTTTATCAA+AGG	-	Chr5:5457746-5457765	None:intergenic	20.0%
!!	CTTTACAATTGATAAAATAG+AGG	+	Chr5:5455554-5455573	MsG0580024481.01.T01:intron	20.0%
!!	GAAGATTACATATGTATTTA+GGG	-	Chr5:5455969-5455988	None:intergenic	20.0%
!!	TAACAAAATAAGAAATTGCA+TGG	-	Chr5:5457719-5457738	None:intergenic	20.0%
!!	TACATAAGAAATAATAAACC+AGG	-	Chr5:5457431-5457450	None:intergenic	20.0%
!!	TATGCTTATACTTATTTAGT+AGG	-	Chr5:5457075-5457094	None:intergenic	20.0%
!!	TGAAGATTACATATGTATTT+AGG	-	Chr5:5455970-5455989	None:intergenic	20.0%
!!!	AATATATCCCATTTTTTTGA+GGG	+	Chr5:5455761-5455780	MsG0580024481.01.T01:intron	20.0%
!!!	TCATTGTTTTGTTAATATGA+AGG	+	Chr5:5456129-5456148	MsG0580024481.01.T01:intron	20.0%
!!!	TGCTATCTTAAATATTTTGA+AGG	-	Chr5:5455805-5455824	None:intergenic	20.0%
!!!	TTTCTGTCATTTATTTGAAA+GGG	+	Chr5:5456722-5456741	MsG0580024481.01.T01:intron	20.0%
!	AAAAGGGAAGTAATAATCAA+AGG	+	Chr5:5456662-5456681	MsG0580024481.01.T01:intron	25.0%
!	AAAGGGAAGTAATAATCAAA+GGG	+	Chr5:5456663-5456682	MsG0580024481.01.T01:intron	25.0%
!	AAATACAAAACAAATGGCAA+AGG	-	Chr5:5456356-5456375	None:intergenic	25.0%
!	AAGTAATAATCAAAGGGTAA+AGG	+	Chr5:5456669-5456688	MsG0580024481.01.T01:intron	25.0%
!	AATATAATTGGTATGTGCAA+TGG	-	Chr5:5457146-5457165	None:intergenic	25.0%
!	ATATTTGTCCCTCAAAAAAA+TGG	-	Chr5:5455772-5455791	None:intergenic	25.0%
!	ATGAACTCAAAATTAAAACG+TGG	-	Chr5:5456918-5456937	None:intergenic	25.0%
!	CCAATAAAAAAATGGAATCT+AGG	-	Chr5:5456618-5456637	None:intergenic	25.0%
!	CTCAAAAAAATGGGATATAT+TGG	-	Chr5:5455762-5455781	None:intergenic	25.0%
!	GATGGAAAATACAAAACAAA+TGG	-	Chr5:5456362-5456381	None:intergenic	25.0%
!	TATTTGTCCCTCAAAAAAAT+GGG	-	Chr5:5455771-5455790	None:intergenic	25.0%
!	TGACATAAACAAGGTTAATT+CGG	-	Chr5:5456419-5456438	None:intergenic	25.0%
!	TGAGAGAAAATAAATTGAAG+AGG	-	Chr5:5455148-5455167	None:intergenic	25.0%
!	TTCTCAATAGGCTAATATTA+TGG	+	Chr5:5457397-5457416	MsG0580024481.01.T01:intron	25.0%
!!	CTTTCTGTCATTTATTTGAA+AGG	+	Chr5:5456721-5456740	MsG0580024481.01.T01:intron	25.0%
!!	GCATAATATTGTTTCTCAAT+AGG	+	Chr5:5457385-5457404	MsG0580024481.01.T01:intron	25.0%
!!!	ATTCCATTTTTTTATTGGCA+GGG	+	Chr5:5456620-5456639	MsG0580024481.01.T01:intron	25.0%
!!!	CAATATATCCCATTTTTTTG+AGG	+	Chr5:5455760-5455779	MsG0580024481.01.T01:intron	25.0%
!!!	CATTGATTTGATTTCAGTAA+GGG	+	Chr5:5455171-5455190	MsG0580024481.01.T01:intron	25.0%
!!!	CCTAGATTCCATTTTTTTAT+TGG	+	Chr5:5456615-5456634	MsG0580024481.01.T01:intron	25.0%
!!!	TTCGTTCTAAATTTTTACTC+AGG	+	Chr5:5457103-5457122	MsG0580024481.01.T01:intron	25.0%
	AAGCACTTATGAGACTATTT+GGG	-	Chr5:5455905-5455924	None:intergenic	30.0%
	AATGTGAAATTAGTTACCTC+TGG	-	Chr5:5455257-5455276	None:intergenic	30.0%
	AATTTCGATATTGAGCTTTG+TGG	+	Chr5:5456446-5456465	MsG0580024481.01.T01:intron	30.0%
	AGAATTGCAAATTAACAGGA+AGG	-	Chr5:5457522-5457541	None:intergenic	30.0%
	AGGATATAAAACACATACGA+AGG	-	Chr5:5457055-5457074	None:intergenic	30.0%
	ATATGAGGCATGTTTACAAA+AGG	+	Chr5:5456645-5456664	MsG0580024481.01.T01:intron	30.0%
	ATCAATTTCTGTTAATCACC+AGG	+	Chr5:5457178-5457197	MsG0580024481.01.T01:intron	30.0%
	CAAAGCTCAATATCGAAATT+TGG	-	Chr5:5456446-5456465	None:intergenic	30.0%
	CAATGAATGAATAAACTCAG+CGG	-	Chr5:5456115-5456134	None:intergenic	30.0%
	CCTTACTGAAATCAAATCAA+TGG	-	Chr5:5455173-5455192	None:intergenic	30.0%
	GAAGAATGTTGAATTGAGAT+TGG	-	Chr5:5455126-5455145	None:intergenic	30.0%
	GCATTTGTAGTTGAATCAAT+TGG	-	Chr5:5456384-5456403	None:intergenic	30.0%
	TAAGCACTTATGAGACTATT+TGG	-	Chr5:5455906-5455925	None:intergenic	30.0%
	TATGAGGCATGTTTACAAAA+GGG	+	Chr5:5456646-5456665	MsG0580024481.01.T01:intron	30.0%
	TCAATTTCTGTTAATCACCA+GGG	+	Chr5:5457179-5457198	MsG0580024481.01.T01:intron	30.0%
	TCTGTACCATTTGATAAAGA+AGG	+	Chr5:5456176-5456195	MsG0580024481.01.T01:CDS	30.0%
	TGAAAGGGTCATTCAAATTT+GGG	+	Chr5:5456737-5456756	MsG0580024481.01.T01:intron	30.0%
	TGAATTCGTTTACTTGTCTA+GGG	+	Chr5:5456525-5456544	MsG0580024481.01.T01:intron	30.0%
	TGGTAGAATTGCAAATTAAC+AGG	-	Chr5:5457526-5457545	None:intergenic	30.0%
	TTAAAACGTGGAAAACATGA+AGG	-	Chr5:5456906-5456925	None:intergenic	30.0%
	TTGAAAGGGTCATTCAAATT+TGG	+	Chr5:5456736-5456755	MsG0580024481.01.T01:intron	30.0%
	TTGAATTCGTTTACTTGTCT+AGG	+	Chr5:5456524-5456543	MsG0580024481.01.T01:intron	30.0%
	TTGGAATGCCTTAAAACTTT+GGG	+	Chr5:5456590-5456609	MsG0580024481.01.T01:intron	30.0%
	TTGTAGTTGAATCAATTGGA+TGG	-	Chr5:5456380-5456399	None:intergenic	30.0%
	TTTCCCTGCCAATAAAAAAA+TGG	-	Chr5:5456626-5456645	None:intergenic	30.0%
	TTTGGCTAATGACATAAACA+AGG	-	Chr5:5456428-5456447	None:intergenic	30.0%
!	TTTGGAATGCCTTAAAACTT+TGG	+	Chr5:5456589-5456608	MsG0580024481.01.T01:intron	30.0%
!!	AAGCTGTTTTCACAAGTTAT+CGG	+	Chr5:5455600-5455619	MsG0580024481.01.T01:intron	30.0%
!!	ATTTGCAAGTTTGCTAAGAA+GGG	+	Chr5:5455350-5455369	MsG0580024481.01.T01:CDS	30.0%
!!	CCATTGATTTGATTTCAGTA+AGG	+	Chr5:5455170-5455189	MsG0580024481.01.T01:intron	30.0%
!!	TATTTGCAAGTTTGCTAAGA+AGG	+	Chr5:5455349-5455368	MsG0580024481.01.T01:CDS	30.0%
!!!	ATTCATTTTTAGTCACCACA+TGG	-	Chr5:5456030-5456049	None:intergenic	30.0%
!!!	GATTCCATTTTTTTATTGGC+AGG	+	Chr5:5456619-5456638	MsG0580024481.01.T01:intron	30.0%
	AAACCGCCTTCTTTATCAAA+TGG	-	Chr5:5456185-5456204	None:intergenic	35.0%
	AAAGACTTCAATGTCACTCT+TGG	-	Chr5:5457026-5457045	None:intergenic	35.0%
	AAATCTTACTACTTCCAGAC+AGG	-	Chr5:5456327-5456346	None:intergenic	35.0%
	AATATTATGGTGTGATTGCC+TGG	+	Chr5:5457410-5457429	MsG0580024481.01.T01:intron	35.0%
	AATCTTACTACTTCCAGACA+GGG	-	Chr5:5456326-5456345	None:intergenic	35.0%
	AGGTTTATCTAGAGACTTGA+TGG	+	Chr5:5457692-5457711	MsG0580024481.01.T01:three_prime_UTR	35.0%
	CAAAAGTCATTAGTTGCGAT+AGG	-	Chr5:5457553-5457572	None:intergenic	35.0%
	CATAAACAAGGTTAATTCGG+TGG	-	Chr5:5456416-5456435	None:intergenic	35.0%
	GAATTCGTTTACTTGTCTAG+GGG	+	Chr5:5456526-5456545	MsG0580024481.01.T01:intron	35.0%
	GAGGGACAAATATTAGAACA+GGG	+	Chr5:5455779-5455798	MsG0580024481.01.T01:intron	35.0%
	GCACAGTAACATGAATGAAA+TGG	+	Chr5:5457270-5457289	MsG0580024481.01.T01:intron	35.0%
	GGTTTATCTAGAGACTTGAT+GGG	+	Chr5:5457693-5457712	MsG0580024481.01.T01:three_prime_UTR	35.0%
	GTACCATTTGATAAAGAAGG+CGG	+	Chr5:5456179-5456198	MsG0580024481.01.T01:CDS	35.0%
	GTTATTCTTCGTGATTCTCA+CGG	+	Chr5:5455395-5455414	MsG0580024481.01.T01:CDS	35.0%
	TATCAAATGGTACAGATCCT+CGG	-	Chr5:5456172-5456191	None:intergenic	35.0%
	TCAAAGTAATGGTAAAACCC+TGG	-	Chr5:5457199-5457218	None:intergenic	35.0%
	TGAGGGACAAATATTAGAAC+AGG	+	Chr5:5455778-5455797	MsG0580024481.01.T01:intron	35.0%
	TGGAATGCCTTAAAACTTTG+GGG	+	Chr5:5456591-5456610	MsG0580024481.01.T01:intron	35.0%
	TGTTGAATTGAGATTGGAAG+AGG	-	Chr5:5455120-5455139	None:intergenic	35.0%
	TTGATTCAACTACAAATGCC+AGG	+	Chr5:5456385-5456404	MsG0580024481.01.T01:intron	35.0%
	TTTATTGGCAGGGAAATATG+AGG	+	Chr5:5456630-5456649	MsG0580024481.01.T01:intron	35.0%
!	AGTTCTTTTGTAGGGTAAAG+CGG	-	Chr5:5455208-5455227	None:intergenic	35.0%
!	CTAGGAGAAGTTCTTTTGTA+GGG	-	Chr5:5455216-5455235	None:intergenic	35.0%
!!	AGCTGTTTTCACAAGTTATC+GGG	+	Chr5:5455601-5455620	MsG0580024481.01.T01:intron	35.0%
	AACAAGGATGAGTCTGAACT+TGG	-	Chr5:5456250-5456269	None:intergenic	40.0%
	AATTAACAGGAAGGCAAGAC+TGG	-	Chr5:5457513-5457532	None:intergenic	40.0%
	ACAAAAGAACTTCTCCTAGC+TGG	+	Chr5:5455217-5455236	MsG0580024481.01.T01:intron	40.0%
	ACGAAGAATAACACCGATCT+GGG	-	Chr5:5455387-5455406	None:intergenic	40.0%
	ATCAAATGGTACAGATCCTC+GGG	-	Chr5:5456171-5456190	None:intergenic	40.0%
	ATCTTACTACTTCCAGACAG+GGG	-	Chr5:5456325-5456344	None:intergenic	40.0%
	ATGGGTCCTAGTGAACTTTA+CGG	-	Chr5:5456767-5456786	None:intergenic	40.0%
	CATTAGTTGCGATAGGAACA+TGG	-	Chr5:5457546-5457565	None:intergenic	40.0%
	CCACATGGACACAAATTCAT+AGG	-	Chr5:5456015-5456034	None:intergenic	40.0%
	CCTATGAATTTGTGTCCATG+TGG	+	Chr5:5456012-5456031	MsG0580024481.01.T01:intron	40.0%
	CTAGTCCTCTCTGAATAGAA+CGG	+	Chr5:5456852-5456871	MsG0580024481.01.T01:intron	40.0%
	GTTAACCGTTCTATTCAGAG+AGG	-	Chr5:5456860-5456879	None:intergenic	40.0%
	TCTTGTAATAGCGAGCAAGA+CGG	-	Chr5:5456287-5456306	None:intergenic	40.0%
	TTCAGCACCTCAAAATTTCG+AGG	-	Chr5:5455667-5455686	None:intergenic	40.0%
!	GCTAGGAGAAGTTCTTTTGT+AGG	-	Chr5:5455217-5455236	None:intergenic	40.0%
!	GGTTGCTTAGAGCTTTGTAT+GGG	+	Chr5:5457606-5457625	MsG0580024481.01.T01:exon	40.0%
!	TCTAGGTCCCCAAAGTTTTA+AGG	-	Chr5:5456601-5456620	None:intergenic	40.0%
!	TGGTTGCTTAGAGCTTTGTA+TGG	+	Chr5:5457605-5457624	MsG0580024481.01.T01:exon	40.0%
!	TTCGATATTGAGCTTTGTGG+TGG	+	Chr5:5456449-5456468	MsG0580024481.01.T01:intron	40.0%
!!	ACCTGTTCGTAAGCTGTTTT+CGG	-	Chr5:5455862-5455881	None:intergenic	40.0%
!!	CAATCTGCAAGGTCATTTTG+AGG	+	Chr5:5457672-5457691	MsG0580024481.01.T01:three_prime_UTR	40.0%
!!	GCTGTTTTCACAAGTTATCG+GGG	+	Chr5:5455602-5455621	MsG0580024481.01.T01:intron	40.0%
!!	TACCATGAGCTTTGAGGATA+CGG	-	Chr5:5455460-5455479	None:intergenic	40.0%
	ACAAGATCCTTCCTAAGTGC+AGG	-	Chr5:5456795-5456814	None:intergenic	45.0%
	AGAATAACACCGATCTGGGA+AGG	-	Chr5:5455383-5455402	None:intergenic	45.0%
	ATCAACAACTGCCAGCACTT+TGG	+	Chr5:5457585-5457604	MsG0580024481.01.T01:CDS	45.0%
	ATGAAGGAAGATGCACCCAA+GGG	-	Chr5:5456890-5456909	None:intergenic	45.0%
	CACGAAGAATAACACCGATC+TGG	-	Chr5:5455388-5455407	None:intergenic	45.0%
	GACTAGAGCTGAAGATGACA+CGG	-	Chr5:5456942-5456961	None:intergenic	45.0%
	GAGAGATACCATGAGCTTTG+AGG	-	Chr5:5455466-5455485	None:intergenic	45.0%
	GATAGCATTGCAAGTTACGC+TGG	+	Chr5:5455818-5455837	MsG0580024481.01.T01:intron	45.0%
	GCAAGACTGGAAAGTTCAAG+AGG	-	Chr5:5457500-5457519	None:intergenic	45.0%
	GCATTTGGAGAGGAACAGAA+AGG	+	Chr5:5456215-5456234	MsG0580024481.01.T01:CDS	45.0%
	GGCTCATTCTTCATGCTTTC+CGG	+	Chr5:5457627-5457646	MsG0580024481.01.T01:three_prime_UTR	45.0%
	GGTTTCAATCCGCAAGCATT+TGG	+	Chr5:5456200-5456219	MsG0580024481.01.T01:CDS	45.0%
	TCATGCTTTCCGGTAACAGA+GGG	+	Chr5:5457637-5457656	MsG0580024481.01.T01:three_prime_UTR	45.0%
	TCTTACTACTTCCAGACAGG+GGG	-	Chr5:5456324-5456343	None:intergenic	45.0%
	TGAGAGATCTTAAGCCAGCT+AGG	-	Chr5:5455234-5455253	None:intergenic	45.0%
	TGGGTCCTAGTGAACTTTAC+GGG	-	Chr5:5456766-5456785	None:intergenic	45.0%
	TGTTCCTCTCCAAATGCTTG+CGG	-	Chr5:5456212-5456231	None:intergenic	45.0%
	TTCATGCTTTCCGGTAACAG+AGG	+	Chr5:5457636-5457655	MsG0580024481.01.T01:three_prime_UTR	45.0%
!	CACAAGGCCTCGAAATTTTG+AGG	+	Chr5:5455657-5455676	MsG0580024481.01.T01:intron	45.0%
!	TCTTTTGTAGGGTAAAGCGG+AGG	-	Chr5:5455205-5455224	None:intergenic	45.0%
!	TGTTACTGTGCAGAAGCACA+CGG	-	Chr5:5457261-5457280	None:intergenic	45.0%
!	TTTTCACAAGTTATCGGGGC+TGG	+	Chr5:5455606-5455625	MsG0580024481.01.T01:intron	45.0%
!!!	ATTAAAAATTAATTAAGTTT+TGG	+	Chr5:5456571-5456590	MsG0580024481.01.T01:intron	5.0%
	ACGGTTAACATCCTTCCCCT+TGG	+	Chr5:5456871-5456890	MsG0580024481.01.T01:intron	50.0%
	ATGAGCACCTGCACTTAGGA+AGG	+	Chr5:5456785-5456804	MsG0580024481.01.T01:intron	50.0%
	CAATCCGCAAGCATTTGGAG+AGG	+	Chr5:5456205-5456224	MsG0580024481.01.T01:CDS	50.0%
	CATGAAGGAAGATGCACCCA+AGG	-	Chr5:5456891-5456910	None:intergenic	50.0%
	CGGTTAACATCCTTCCCCTT+GGG	+	Chr5:5456872-5456891	MsG0580024481.01.T01:intron	50.0%
	CTCCGTATCCTCAAAGCTCA+TGG	+	Chr5:5455455-5455474	MsG0580024481.01.T01:CDS	50.0%
	GCAAAGCGGGATACTACACA+AGG	+	Chr5:5455641-5455660	MsG0580024481.01.T01:intron	50.0%
	GCCGAAAACAGCTTACGAAC+AGG	+	Chr5:5455858-5455877	MsG0580024481.01.T01:intron	50.0%
	GGAGAGGAACAGAAAGGACA+AGG	+	Chr5:5456221-5456240	MsG0580024481.01.T01:CDS	50.0%
	GGCATCCCGTAAAGTTCACT+AGG	+	Chr5:5456758-5456777	MsG0580024481.01.T01:intron	50.0%
	GGCTTAAGATCTCTCACCAG+AGG	+	Chr5:5455238-5455257	MsG0580024481.01.T01:intron	50.0%
	GGTTTGACTCCTTCCCAGAT+CGG	+	Chr5:5455371-5455390	MsG0580024481.01.T01:CDS	50.0%
	TACAGATCCTCGGGAATCTC+AGG	-	Chr5:5456162-5456181	None:intergenic	50.0%
	TCCTAAGTGCAGGTGCTCAT+GGG	-	Chr5:5456785-5456804	None:intergenic	50.0%
	TGAAGGAAGATGCACCCAAG+GGG	-	Chr5:5456889-5456908	None:intergenic	50.0%
	TGATTCTCACGGCATTGCTC+AGG	+	Chr5:5455406-5455425	MsG0580024481.01.T01:CDS	50.0%
	TGTAATAGCGAGCAAGACGG+TGG	-	Chr5:5456284-5456303	None:intergenic	50.0%
	TTCCTAAGTGCAGGTGCTCA+TGG	-	Chr5:5456786-5456805	None:intergenic	50.0%
!	GCTCTAAGCAACCAAAGTGC+TGG	-	Chr5:5457599-5457618	None:intergenic	50.0%
!	GGTGGATTCTGCTCTCAACA+AGG	-	Chr5:5456266-5456285	None:intergenic	50.0%
!	GTTAATTCGGTGGCTAAGCC+TGG	-	Chr5:5456406-5456425	None:intergenic	50.0%
!	GTTACTGTGCAGAAGCACAC+GGG	-	Chr5:5457260-5457279	None:intergenic	50.0%
!!	CATGAGCTTTGAGGATACGG+AGG	-	Chr5:5455457-5455476	None:intergenic	50.0%
	ACCCATGAGCACCTGCACTT+AGG	+	Chr5:5456781-5456800	MsG0580024481.01.T01:intron	55.0%
	ACTTGCACCTGAGATTCCCG+AGG	+	Chr5:5456152-5456171	MsG0580024481.01.T01:CDS	55.0%
	GTAACAGAGGGTTGCTGCAC+TGG	+	Chr5:5457649-5457668	MsG0580024481.01.T01:three_prime_UTR	55.0%
	GTGCAGCAACCCTCTGTTAC+CGG	-	Chr5:5457649-5457668	None:intergenic	55.0%
	TGTAGTATCCCGCTTTGCGC+AGG	-	Chr5:5455639-5455658	None:intergenic	55.0%
!	TGCTGCACTGGCAATCTGCA+AGG	+	Chr5:5457661-5457680	MsG0580024481.01.T01:three_prime_UTR	55.0%
!!	GCTCAGGTCAAGAGCGTTAC+TGG	+	Chr5:5455422-5455441	MsG0580024481.01.T01:CDS	55.0%
	CCAAGAAGCTTCCCCCTGTC+TGG	+	Chr5:5456310-5456329	MsG0580024481.01.T01:CDS	60.0%
	CCAGACAGGGGGAAGCTTCT+TGG	-	Chr5:5456313-5456332	None:intergenic	60.0%
	GGAAGATGCACCCAAGGGGA+AGG	-	Chr5:5456885-5456904	None:intergenic	60.0%
	GGTGAACAGCCTGCGCAAAG+CGG	+	Chr5:5455627-5455646	MsG0580024481.01.T01:intron	60.0%
	GTGAACAGCCTGCGCAAAGC+GGG	+	Chr5:5455628-5455647	MsG0580024481.01.T01:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	5455109	5457827	5455109	ID=MsG0580024481.01;Name=MsG0580024481.01
Chr5	mRNA	5455109	5457827	5455109	ID=MsG0580024481.01.T01;Parent=MsG0580024481.01;Name=MsG0580024481.01.T01;_AED=0.44;_eAED=0.51;_QI=0\|0.66\|0.75\|1\|0.66\|0.5\|4\|212\|145
Chr5	exon	5455109	5455186	5455109	ID=MsG0580024481.01.T01:exon:25624;Parent=MsG0580024481.01.T01
Chr5	exon	5455338	5455476	5455338	ID=MsG0580024481.01.T01:exon:25625;Parent=MsG0580024481.01.T01
Chr5	exon	5456151	5456337	5456151	ID=MsG0580024481.01.T01:exon:25626;Parent=MsG0580024481.01.T01
Chr5	exon	5457582	5457827	5457582	ID=MsG0580024481.01.T01:exon:25627;Parent=MsG0580024481.01.T01
Chr5	CDS	5455109	5455186	5455109	ID=MsG0580024481.01.T01:cds;Parent=MsG0580024481.01.T01
Chr5	CDS	5455338	5455476	5455338	ID=MsG0580024481.01.T01:cds;Parent=MsG0580024481.01.T01
Chr5	CDS	5456151	5456337	5456151	ID=MsG0580024481.01.T01:cds;Parent=MsG0580024481.01.T01
Chr5	CDS	5457582	5457615	5457582	ID=MsG0580024481.01.T01:cds;Parent=MsG0580024481.01.T01
Chr5	three_prime_UTR	5457616	5457827	5457616	ID=MsG0580024481.01.T01:three_prime_utr;Parent=MsG0580024481.01.T01

Gene Sequence

>MsG0580024481.01.T01

ATGTATCTCCTCTTCCAATCTCAATTCAACATTCTTCCTCTTCAATTTATTTTCTCTCACACCATTGATTTGATTTCAGTTGATGAGACTATTTGCAAGTTTGCTAAGAAGGGTTTGACTCCTTCCCAGATCGGTGTTATTCTTCGTGATTCTCACGGCATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAAATCCTCCGTATCCTCAAAGCTCATGGACTTGCACCTGAGATTCCCGAGGATCTGTACCATTTGATAAAGAAGGCGGTTTCAATCCGCAAGCATTTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTCAGACTCATCCTTGTTGAGAGCAGAATCCACCGTCTTGCTCGCTATTACAAGAAAACCAAGAAGCTTCCCCCTGTCTGGAAGTACGAATCAACAACTGCCAGCACTTTGGTTGCTTAG

Protein sequence

>MsG0580024481.01.T01

MYLLFQSQFNILPLQFIFSHTIDLISVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA*