AlfalfaGEDB | MsG0580025242.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025242.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048817.01	MsG0580025242.01	0.823261	1.523560e-53	1.305263e-50
MsG0180000139.01	MsG0580025242.01	0.838701	2.459267e-57	3.320663e-54
MsG0180000335.01	MsG0580025242.01	0.809394	1.934160e-50	1.134278e-47
MsG0180001131.01	MsG0580025242.01	0.806131	9.544670e-50	5.140267e-47
MsG0180002482.01	MsG0580025242.01	0.816656	4.941924e-52	3.522830e-49
MsG0180003493.01	MsG0580025242.01	0.816295	5.952728e-52	4.201799e-49
MsG0180006261.01	MsG0580025242.01	0.802955	4.388501e-49	2.178155e-46
MsG0280010776.01	MsG0580025242.01	0.801665	8.088414e-49	3.884853e-46
MsG0280011339.01	MsG0580025242.01	0.802603	5.187423e-49	2.551751e-46
MsG0280011387.01	MsG0580025242.01	0.804410	2.189267e-49	1.127946e-46
MsG0380012122.01	MsG0580025242.01	0.811170	8.002290e-51	4.918496e-48
MsG0480020874.01	MsG0580025242.01	0.824926	6.193052e-54	5.563603e-51
MsG0480022340.01	MsG0580025242.01	-0.806385	8.440443e-50	4.574902e-47
MsG0480022795.01	MsG0580025242.01	0.812004	5.271785e-51	3.312798e-48
MsG0480023814.01	MsG0580025242.01	0.808506	2.995031e-50	1.715558e-47
MsG0580025242.01	MsG0580028418.01	0.800646	1.307441e-48	6.119959e-46
MsG0580025242.01	MsG0580029549.01	0.809748	1.622993e-50	9.608517e-48
MsG0580025242.01	MsG0780036964.01	0.804117	2.519476e-49	1.288401e-46
MsG0580025242.01	MsG0780041137.01	0.808114	3.631122e-50	2.058552e-47
MsG0580025242.01	MsG0780041402.01	0.809776	1.601023e-50	9.485338e-48
MsG0580025242.01	MsG0880045605.01	-0.813426	2.575812e-51	1.681559e-48
MsG0580025242.01	MsG0880047427.01	0.832143	1.118445e-55	1.239158e-52
MsG0380016191.01	MsG0580025242.01	-0.814694	1.352101e-51	9.135360e-49
MsG0380016347.01	MsG0580025242.01	-0.800308	1.531895e-48	7.109773e-46
MsG0380016671.01	MsG0580025242.01	0.801677	8.041877e-49	3.863686e-46
MsG0380016910.01	MsG0580025242.01	0.800183	1.624179e-48	7.513716e-46
MsG0280007763.01	MsG0580025242.01	0.808272	3.360220e-50	1.913049e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 16 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAAATTGTTGAAGCCACT+TGG	0.460840	5:+15778796	MsG0580025242.01.T01:CDS
TCAAGATGTTGAGGTATTCA+AGG	0.462945	5:+15778683	MsG0580025242.01.T01:CDS
TTGAATCAACCTGGATTCCT+CGG	0.465616	5:-15778664	None:intergenic
AGGTATTCAAGGGCATTGAT+TGG	0.489346	5:+15778694	MsG0580025242.01.T01:CDS
CTCAACATCTTGAATCAACC+TGG	0.515554	5:-15778673	None:intergenic
ATGCAACTCTGCTGGTGTAA+TGG	0.527579	5:+15778761	MsG0580025242.01.T01:CDS
TGAATCAACCTGGATTCCTC+GGG	0.539173	5:-15778663	None:intergenic
TGCAAAGCATGCAACTCTGC+TGG	0.554272	5:+15778753	MsG0580025242.01.T01:CDS
AACTCTGCTGGTGTAATGGC+TGG	0.557213	5:+15778765	MsG0580025242.01.T01:CDS
CTGATATGGTGAATGGCTGG+TGG	0.575310	5:+15778603	None:intergenic
TTTCTGATATGGTGAATGGC+TGG	0.577825	5:+15778600	None:intergenic
CAAGATGTTGAGGTATTCAA+GGG	0.581251	5:+15778684	MsG0580025242.01.T01:CDS
GAGTTGCATGCTTTGCACCA+TGG	0.594770	5:-15778747	None:intergenic
CAGGTTGATTCAAGATGTTG+AGG	0.617694	5:+15778674	MsG0580025242.01.T01:CDS
AAATTGTTGAAGCCACTTGG+TGG	0.620286	5:+15778799	MsG0580025242.01.T01:CDS
CTGTTGAAGATCGCATTCCA+TGG	0.631541	5:+15778730	MsG0580025242.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATCAAATTGTTGAAGCCACT+TGG	+	Chr5:15778796-15778815	MsG0580025242.01.T01:CDS	35.0%
!	CAAGATGTTGAGGTATTCAA+GGG	+	Chr5:15778684-15778703	MsG0580025242.01.T01:CDS	35.0%
!	TCAAGATGTTGAGGTATTCA+AGG	+	Chr5:15778683-15778702	MsG0580025242.01.T01:CDS	35.0%
	AAAAACAATGCAGCAGCAAG+TGG	-	Chr5:15778643-15778662	None:intergenic	40.0%
	AAATTGTTGAAGCCACTTGG+TGG	+	Chr5:15778799-15778818	MsG0580025242.01.T01:CDS	40.0%
	CTCAACATCTTGAATCAACC+TGG	-	Chr5:15778676-15778695	None:intergenic	40.0%
	TTGAATCAACCTGGATTCCT+CGG	-	Chr5:15778667-15778686	None:intergenic	40.0%
!!	AGGTATTCAAGGGCATTGAT+TGG	+	Chr5:15778694-15778713	MsG0580025242.01.T01:CDS	40.0%
!!	CAGGTTGATTCAAGATGTTG+AGG	+	Chr5:15778674-15778693	MsG0580025242.01.T01:CDS	40.0%
	ATGCAACTCTGCTGGTGTAA+TGG	+	Chr5:15778761-15778780	MsG0580025242.01.T01:CDS	45.0%
	CTGTTGAAGATCGCATTCCA+TGG	+	Chr5:15778730-15778749	MsG0580025242.01.T01:CDS	45.0%
	TGAATCAACCTGGATTCCTC+GGG	-	Chr5:15778666-15778685	None:intergenic	45.0%
!!	TTGTTTTTCCCGAGGAATCC+AGG	+	Chr5:15778655-15778674	MsG0580025242.01.T01:CDS	45.0%
	AACTCTGCTGGTGTAATGGC+TGG	+	Chr5:15778765-15778784	MsG0580025242.01.T01:CDS	50.0%
	GAGTTGCATGCTTTGCACCA+TGG	-	Chr5:15778750-15778769	None:intergenic	50.0%
	TGCAAAGCATGCAACTCTGC+TGG	+	Chr5:15778753-15778772	MsG0580025242.01.T01:CDS	50.0%
!!	CTGCTGCATTGTTTTTCCCG+AGG	+	Chr5:15778647-15778666	MsG0580025242.01.T01:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	15778615	15778830	15778615	ID=MsG0580025242.01;Name=MsG0580025242.01
Chr5	mRNA	15778615	15778830	15778615	ID=MsG0580025242.01.T01;Parent=MsG0580025242.01;Name=MsG0580025242.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|71
Chr5	exon	15778615	15778830	15778615	ID=MsG0580025242.01.T01:exon:30173;Parent=MsG0580025242.01.T01
Chr5	CDS	15778615	15778830	15778615	ID=MsG0580025242.01.T01:cds;Parent=MsG0580025242.01.T01

Gene Sequence	>MsG0580025242.01.T01 ATGGCTGGTGGTTTTTCGTACACGACCACTTGCTGCTGCATTGTTTTTCCCGAGGAATCCAGGTTGATTCAAGATGTTGAGGTATTCAAGGGCATTGATTGGTTCTTTGCTAATGCTGTTGAAGATCGCATTCCATGGTGCAAAGCATGCAACTCTGCTGGTGTAATGGCTGGAAGACAACATCAAATTGTTGAAGCCACTTGGTGGTGTGACTAA
Protein sequence	>MsG0580025242.01.T01 MAGGFSYTTTCCCIVFPEESRLIQDVEVFKGIDWFFANAVEDRIPWCKACNSAGVMAGRQHQIVEATWWCD*