AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022213.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022213.01.T01 MTR_7g100760 56.000 150 14 3 1 111 36 172 1.57e-42 151
MsG0480022213.01.T01 MTR_7g100760 56.028 141 29 4 145 253 361 500 5.49e-35 130
MsG0480022213.01.T01 MTR_4g083330 65.041 123 18 4 1 111 36 145 4.23e-41 147
MsG0480022213.01.T01 MTR_4g083330 65.957 141 15 4 145 253 334 473 2.78e-36 134
MsG0480022213.01.T01 MTR_4g083340 50.000 150 23 3 1 111 33 169 3.89e-36 134
MsG0480022213.01.T01 MTR_4g083340 58.394 137 26 4 147 253 362 497 1.67e-35 132
MsG0480022213.01.T01 MTR_6g004020 49.333 150 24 3 1 111 46 182 2.17e-35 132
MsG0480022213.01.T01 MTR_6g004020 41.667 192 75 6 98 253 320 510 3.01e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022213.01.T01 AT3G04050 50.980 153 17 4 1 111 42 178 3.14e-37 137
MsG0480022213.01.T01 AT3G04050 38.849 139 51 6 147 253 374 510 3.59e-16 77.8
MsG0480022213.01.T01 AT3G55650 51.333 150 21 3 1 111 42 178 3.97e-37 137
MsG0480022213.01.T01 AT3G55650 33.987 153 67 6 133 253 360 510 1.94e-12 67.0
MsG0480022213.01.T01 AT5G56350 50.667 150 22 3 1 111 34 170 4.02e-35 131
MsG0480022213.01.T01 AT5G56350 54.545 132 31 3 150 253 368 498 1.52e-30 119
MsG0480022213.01.T01 AT3G25960 49.333 150 24 3 1 111 42 178 1.45e-34 130
MsG0480022213.01.T01 AT3G25960 36.552 145 61 6 133 253 360 497 7.06e-12 65.1
MsG0480022213.01.T01 AT5G08570 49.333 150 24 3 1 111 46 182 1.48e-34 130
MsG0480022213.01.T01 AT5G08570 45.455 132 43 3 150 253 380 510 1.18e-23 99.8
MsG0480022213.01.T01 AT5G08570 49.333 150 24 3 1 111 46 182 1.48e-34 130
MsG0480022213.01.T01 AT5G08570 45.455 132 43 3 150 253 380 510 1.18e-23 99.8
MsG0480022213.01.T01 AT5G08570 49.333 150 24 3 1 111 46 182 1.48e-34 130
MsG0480022213.01.T01 AT5G08570 45.455 132 43 3 150 253 380 510 1.18e-23 99.8
MsG0480022213.01.T01 AT4G26390 48.667 150 25 3 1 111 33 169 2.79e-34 129
MsG0480022213.01.T01 AT4G26390 48.485 132 39 3 150 253 367 497 4.01e-25 103
MsG0480022213.01.T01 AT5G63680 42.458 179 46 4 1 135 46 211 4.18e-33 126
MsG0480022213.01.T01 AT5G63680 47.727 132 40 3 150 253 380 510 6.58e-26 105
MsG0480022213.01.T01 AT5G63680 42.458 179 46 4 1 135 46 211 4.18e-33 126
MsG0480022213.01.T01 AT5G63680 47.727 132 40 3 150 253 380 510 6.58e-26 105
MsG0480022213.01.T01 AT5G63680 42.458 179 46 4 1 135 46 211 4.18e-33 126
MsG0480022213.01.T01 AT5G63680 47.727 132 40 3 150 253 380 510 6.58e-26 105
MsG0480022213.01.T01 AT3G55810 43.609 133 23 3 18 111 41 160 5.41e-22 94.7
MsG0480022213.01.T01 AT3G55810 34.641 153 66 6 133 253 342 492 1.22e-13 70.5

Find 63 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGAGAACTCTGCTGTTCT+AGG 0.329692 4:+69749205 MsG0480022213.01.T01:CDS
GCAGAAGCAGCACTTAATAT+TGG 0.330688 4:-69750341 None:intergenic
CAGAGTCCCTTTCCCTTCCT+TGG 0.348984 4:-69750419 None:intergenic
GAAAGGGACTCTGCGTTAAC+GGG 0.361244 4:+69750429 MsG0480022213.01.T01:CDS
CTTATCGTGTGACAAAGAAT+TGG 0.361638 4:+69749165 MsG0480022213.01.T01:CDS
CGATAAGACTGTAAATGATA+TGG 0.371207 4:-69749149 None:intergenic
GCTGAGAGCACCATTGACTA+TGG 0.403578 4:+69750045 MsG0480022213.01.T01:CDS
GGAAAGGGACTCTGCGTTAA+CGG 0.404260 4:+69750428 MsG0480022213.01.T01:CDS
TCCCTTCCTTGGCACATTGA+AGG 0.405690 4:-69750408 None:intergenic
CGCCGTCATGCTCGATACTA+AGG 0.406356 4:+69748080 MsG0480022213.01.T01:CDS
GAGATGTATTCAAAGGATAA+TGG 0.408245 4:+69750067 MsG0480022213.01.T01:CDS
AAGGAGGGACTACTGCAAAA+TGG 0.417538 4:+69750188 MsG0480022213.01.T01:CDS
CATGACGGCGCAGAGAATTC+CGG 0.420747 4:-69748067 None:intergenic
TTGTTTCAGTTGGATAGGTT+TGG 0.435015 4:-69749006 None:intergenic
TGCTAGAGCAGCTCTCATAT+TGG 0.437951 4:+69750159 MsG0480022213.01.T01:CDS
CTTACATTGCTCATTGCTGT+AGG 0.444703 4:+69748951 MsG0480022213.01.T01:CDS
TTATCGTGTGACAAAGAATT+GGG 0.446712 4:+69749166 MsG0480022213.01.T01:CDS
TTTCATTACCTTGTTTCAGT+TGG 0.451778 4:-69749016 None:intergenic
TTACCTTGTTTCAGTTGGAT+AGG 0.452533 4:-69749011 None:intergenic
TCCAATGGGCTCATGGGTAC+TGG 0.457116 4:-69750098 None:intergenic
AGAAATCCAGTTCGAATCTC+AGG 0.458723 4:-69748975 None:intergenic
GAGAGCTGCTCTAGCAGAGT+TGG 0.462449 4:-69750152 None:intergenic
GTAGGGCCTGAGATTCGAAC+TGG 0.477884 4:+69748969 MsG0480022213.01.T01:CDS
TAGACTCTCCAATGGGCTCA+TGG 0.478114 4:-69750105 None:intergenic
GCTAGATTCAACTTCTCTCA+TGG 0.485672 4:+69747989 MsG0480022213.01.T01:CDS
AATATCAAGCTATGTCTAGC+AGG 0.486770 4:-69750305 None:intergenic
GTGTGACAAAGAATTGGGTT+TGG 0.488491 4:+69749171 MsG0480022213.01.T01:CDS
TTACATTGCTCATTGCTGTA+GGG 0.488647 4:+69748952 MsG0480022213.01.T01:CDS
AGAAAGAATGTTAATCTGCC+TGG 0.492316 4:+69749232 MsG0480022213.01.T01:CDS
CGTTAACGGGGATTCTGTTG+TGG 0.503390 4:+69750442 MsG0480022213.01.T01:CDS
TAGAGCCGCCATGGAAATAC+CGG 0.506381 4:+69748048 MsG0480022213.01.T01:CDS
TGCCTTCAATGTGCCAAGGA+AGG 0.506982 4:+69750406 MsG0480022213.01.T01:CDS
TGGTTCTCATGAGTATCATC+AGG 0.514740 4:+69748009 MsG0480022213.01.T01:CDS
GCCTTCAATGTGCCAAGGAA+GGG 0.516606 4:+69750407 MsG0480022213.01.T01:CDS
GAATACATCTCCATAGTCAA+TGG 0.517596 4:-69750055 None:intergenic
AGAGAATTCCGGTATTTCCA+TGG 0.531050 4:-69748056 None:intergenic
AGACTCTCCAATGGGCTCAT+GGG 0.558290 4:-69750104 None:intergenic
CAATGTGCCAAGGAAGGGAA+AGG 0.561004 4:+69750412 MsG0480022213.01.T01:CDS
TTAATATTGGAATCAATCCT+CGG 0.562918 4:-69750328 None:intergenic
ACCAGTACCCATGAGCCCAT+TGG 0.569139 4:+69750097 MsG0480022213.01.T01:CDS
GACTATGGAGATGTATTCAA+AGG 0.575193 4:+69750060 MsG0480022213.01.T01:CDS
TTTAATGGGAGATCATTTCA+CGG 0.575483 4:-69750507 None:intergenic
ATATCAAGCTATGTCTAGCA+GGG 0.576391 4:-69750304 None:intergenic
AAGAAGCTAGACTCTCCAAT+GGG 0.579536 4:-69750112 None:intergenic
TGATAATCTTAGAGCCGCCA+TGG 0.580668 4:+69748039 MsG0480022213.01.T01:CDS
GAAGAAGCTAGACTCTCCAA+TGG 0.581820 4:-69750113 None:intergenic
AATGTGCCAAGGAAGGGAAA+GGG 0.584568 4:+69750413 MsG0480022213.01.T01:CDS
TGTTGTGGTTCTGCATCGCG+TGG 0.586595 4:+69750457 MsG0480022213.01.T01:CDS
GATTCGAACTGGATTTCTCA+AGG 0.588567 4:+69748980 MsG0480022213.01.T01:CDS
AGAACTTGCTGTTCGTACAA+TGG 0.602563 4:+69750005 MsG0480022213.01.T01:intron
AGACATAGCTTGATATTCCG+AGG 0.602907 4:+69750311 MsG0480022213.01.T01:CDS
CAAGCTATGTCTAGCAGGGG+CGG 0.615955 4:-69750300 None:intergenic
TCATATTGGTTCTACAAGGA+GGG 0.621323 4:+69750173 MsG0480022213.01.T01:CDS
CTCATATTGGTTCTACAAGG+AGG 0.623164 4:+69750172 MsG0480022213.01.T01:CDS
GCTCTCATATTGGTTCTACA+AGG 0.624555 4:+69750169 MsG0480022213.01.T01:CDS
AATTTGCCTTCAATGTGCCA+AGG 0.627000 4:+69750402 MsG0480022213.01.T01:CDS
AAACCTATCCAACTGAAACA+AGG 0.639584 4:+69749008 MsG0480022213.01.T01:CDS
AAAGGGACTCTGCGTTAACG+GGG 0.647503 4:+69750430 MsG0480022213.01.T01:CDS
GTTGTGGTTCTGCATCGCGT+GGG 0.653541 4:+69750458 MsG0480022213.01.T01:CDS
TATCAAGCTATGTCTAGCAG+GGG 0.688643 4:-69750303 None:intergenic
TACCTTAGTATCGAGCATGA+CGG 0.708450 4:-69748082 None:intergenic
GAATTCCGGTATTTCCATGG+CGG 0.712072 4:-69748053 None:intergenic
GAACAGCAGAGTTCTCACAG+CGG 0.862341 4:-69749201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTTGATTCTTAATATTA+TGG + Chr4:69748796-69748815 MsG0480022213.01.T01:intron 15.0%
!!! CTGAAAATAATTTTTGTATT+TGG + Chr4:69748473-69748492 MsG0480022213.01.T01:intron 15.0%
!! AATTCTTATCCATACATATA+AGG - Chr4:69748239-69748258 None:intergenic 20.0%
!! ATTAAGAATCAAGTAAAAAC+CGG - Chr4:69748792-69748811 None:intergenic 20.0%
!! TAAAAGAACTATAGTCTATT+TGG - Chr4:69748730-69748749 None:intergenic 20.0%
! AAGAGATAGAAAAAATCAGT+AGG - Chr4:69749623-69749642 None:intergenic 25.0%
! ATTTATAAGTGCAATATCCA+AGG + Chr4:69749834-69749853 MsG0480022213.01.T01:intron 25.0%
! TGTTAGATTAGGTTATGTTT+GGG + Chr4:69748313-69748332 MsG0480022213.01.T01:intron 25.0%
! TTAATATTGGAATCAATCCT+CGG - Chr4:69750331-69750350 None:intergenic 25.0%
!! GCAATCATGTCAATTTTATT+GGG - Chr4:69749320-69749339 None:intergenic 25.0%
!! TTTTATAAGATGTCTTAGAG+AGG + Chr4:69748438-69748457 MsG0480022213.01.T01:intron 25.0%
!!! ATGGTTTAGAACCTTATTTT+GGG + Chr4:69748815-69748834 MsG0480022213.01.T01:intron 25.0%
!!! TATGGTTTAGAACCTTATTT+TGG + Chr4:69748814-69748833 MsG0480022213.01.T01:intron 25.0%
!!! TATTAAGAGAGTTTTAGTTG+CGG - Chr4:69748874-69748893 None:intergenic 25.0%
!!! TGATTTTGACCTTATATGTA+TGG + Chr4:69748227-69748246 MsG0480022213.01.T01:intron 25.0%
ACAGTTCAAACATGTATTGA+CGG - Chr4:69748296-69748315 None:intergenic 30.0%
CATGTTTGAACTGTTAGATT+AGG + Chr4:69748302-69748321 MsG0480022213.01.T01:intron 30.0%
CGATAAGACTGTAAATGATA+TGG - Chr4:69749152-69749171 None:intergenic 30.0%
CTGTTAGATTAGGTTATGTT+TGG + Chr4:69748312-69748331 MsG0480022213.01.T01:intron 30.0%
GAGATGTATTCAAAGGATAA+TGG + Chr4:69750067-69750086 MsG0480022213.01.T01:CDS 30.0%
TACAATACTCACCCAAAATA+AGG - Chr4:69748829-69748848 None:intergenic 30.0%
TCAATTGAATTTCCATTCCA+AGG - Chr4:69749788-69749807 None:intergenic 30.0%
TGTTTCATGCAAGTTATTAG+CGG + Chr4:69748414-69748433 MsG0480022213.01.T01:intron 30.0%
TTATCGTGTGACAAAGAATT+GGG + Chr4:69749166-69749185 MsG0480022213.01.T01:CDS 30.0%
! CGCAATCATGTCAATTTTAT+TGG - Chr4:69749321-69749340 None:intergenic 30.0%
! TTTCATTACCTTGTTTCAGT+TGG - Chr4:69749019-69749038 None:intergenic 30.0%
!! ATAAAAGCATCTTCAATGTC+CGG + Chr4:69748770-69748789 MsG0480022213.01.T01:intron 30.0%
!! CAAGATTTTGATGATTGATG+CGG - Chr4:69750486-69750505 None:intergenic 30.0%
AAACCTATCCAACTGAAACA+AGG + Chr4:69749008-69749027 MsG0480022213.01.T01:CDS 35.0%
AAACTCTGATGCATTTATGG+TGG + Chr4:69749752-69749771 MsG0480022213.01.T01:intron 35.0%
AAGATGTCTTAGAGAGGTTA+TGG + Chr4:69748444-69748463 MsG0480022213.01.T01:intron 35.0%
AATATCAAGCTATGTCTAGC+AGG - Chr4:69750308-69750327 None:intergenic 35.0%
AGAAAGAATGTTAATCTGCC+TGG + Chr4:69749232-69749251 MsG0480022213.01.T01:CDS 35.0%
AGAACATTCTTCTCATGTCA+AGG + Chr4:69749405-69749424 MsG0480022213.01.T01:intron 35.0%
AGGAACACAACAGAAAGAAT+TGG - Chr4:69750237-69750256 None:intergenic 35.0%
ATATCAAGCTATGTCTAGCA+GGG - Chr4:69750307-69750326 None:intergenic 35.0%
ATCTCCATGAGCTACAAAAT+TGG + Chr4:69749082-69749101 MsG0480022213.01.T01:intron 35.0%
ATGAAGCAACTTGAAAATGC+TGG - Chr4:69748905-69748924 None:intergenic 35.0%
ATTGTATTCTCATCACCCTT+AGG - Chr4:69749064-69749083 None:intergenic 35.0%
CTTATCGTGTGACAAAGAAT+TGG + Chr4:69749165-69749184 MsG0480022213.01.T01:CDS 35.0%
GAAAGACAAGGAAGATATCA+TGG + Chr4:69749284-69749303 MsG0480022213.01.T01:intron 35.0%
GAATACATCTCCATAGTCAA+TGG - Chr4:69750058-69750077 None:intergenic 35.0%
GACTATGGAGATGTATTCAA+AGG + Chr4:69750060-69750079 MsG0480022213.01.T01:CDS 35.0%
GTACAAGTTCGAAAACTTCT+AGG + Chr4:69749371-69749390 MsG0480022213.01.T01:intron 35.0%
TAAATGCATCAGAGTTTGCA+AGG - Chr4:69749749-69749768 None:intergenic 35.0%
TAACGACTGATACCTTTGAT+TGG + Chr4:69750261-69750280 MsG0480022213.01.T01:intron 35.0%
TCCAATAACACACATTAACG+TGG - Chr4:69749550-69749569 None:intergenic 35.0%
TCCACGTTAATGTGTGTTAT+TGG + Chr4:69749546-69749565 MsG0480022213.01.T01:intron 35.0%
TCTGCAACTTGCAAATGTAT+GGG + Chr4:69749683-69749702 MsG0480022213.01.T01:intron 35.0%
TGAGAAGAATGTTCTTAGCA+TGG - Chr4:69749400-69749419 None:intergenic 35.0%
TGCAAACTCTGATGCATTTA+TGG + Chr4:69749749-69749768 MsG0480022213.01.T01:intron 35.0%
TTACATTGCTCATTGCTGTA+GGG + Chr4:69748952-69748971 MsG0480022213.01.T01:CDS 35.0%
TTCAACTGACTATAGCCTAA+GGG + Chr4:69749046-69749065 MsG0480022213.01.T01:intron 35.0%
TTGTCTTTCTCAGTCAAAGT+GGG - Chr4:69749273-69749292 None:intergenic 35.0%
TTGTTTCAGTTGGATAGGTT+TGG - Chr4:69749009-69749028 None:intergenic 35.0%
TTTCAACTGACTATAGCCTA+AGG + Chr4:69749045-69749064 MsG0480022213.01.T01:intron 35.0%
! TTACCTTGTTTCAGTTGGAT+AGG - Chr4:69749014-69749033 None:intergenic 35.0%
!! TCATATTGGTTCTACAAGGA+GGG + Chr4:69750173-69750192 MsG0480022213.01.T01:CDS 35.0%
AAGAAGCTAGACTCTCCAAT+GGG - Chr4:69750115-69750134 None:intergenic 40.0%
AATTTGCCTTCAATGTGCCA+AGG + Chr4:69750402-69750421 MsG0480022213.01.T01:CDS 40.0%
ACAAGGAAGATATCATGGCT+TGG + Chr4:69749289-69749308 MsG0480022213.01.T01:intron 40.0%
AGAAATCCAGTTCGAATCTC+AGG - Chr4:69748978-69748997 None:intergenic 40.0%
AGACATAGCTTGATATTCCG+AGG + Chr4:69750311-69750330 MsG0480022213.01.T01:CDS 40.0%
AGAGAATTCCGGTATTTCCA+TGG - Chr4:69748059-69748078 None:intergenic 40.0%
AGTCAATGATCAAATCTCCC+CGG + Chr4:69749889-69749908 MsG0480022213.01.T01:intron 40.0%
ATCACTGCATGACCAATCAA+AGG - Chr4:69750276-69750295 None:intergenic 40.0%
ATTGTACGAACAGCAAGTTC+TGG - Chr4:69750006-69750025 None:intergenic 40.0%
CAAGGAAGATATCATGGCTT+GGG + Chr4:69749290-69749309 MsG0480022213.01.T01:intron 40.0%
CACTTTGACTGAGAAAGACA+AGG + Chr4:69749272-69749291 MsG0480022213.01.T01:intron 40.0%
CATACATTTGCAAGTTGCAG+AGG - Chr4:69749684-69749703 None:intergenic 40.0%
CTCTGCAACTTGCAAATGTA+TGG + Chr4:69749682-69749701 MsG0480022213.01.T01:intron 40.0%
CTTACATTGCTCATTGCTGT+AGG + Chr4:69748951-69748970 MsG0480022213.01.T01:CDS 40.0%
CTTGTCTTTCTCAGTCAAAG+TGG - Chr4:69749274-69749293 None:intergenic 40.0%
GATTCGAACTGGATTTCTCA+AGG + Chr4:69748980-69748999 MsG0480022213.01.T01:CDS 40.0%
GCAAAATGGTGGCTAAATAC+AGG + Chr4:69750202-69750221 MsG0480022213.01.T01:intron 40.0%
GCAGAAGCAGCACTTAATAT+TGG - Chr4:69750344-69750363 None:intergenic 40.0%
GCGCTTTCATTTGTTCGAAA+AGG + Chr4:69749338-69749357 MsG0480022213.01.T01:intron 40.0%
GCTAGATTCAACTTCTCTCA+TGG + Chr4:69747989-69748008 MsG0480022213.01.T01:CDS 40.0%
GTGCAATATCCAAGGAAAAC+CGG + Chr4:69749842-69749861 MsG0480022213.01.T01:intron 40.0%
GTGTGACAAAGAATTGGGTT+TGG + Chr4:69749171-69749190 MsG0480022213.01.T01:CDS 40.0%
TATCAAGCTATGTCTAGCAG+GGG - Chr4:69750306-69750325 None:intergenic 40.0%
TGGTTCTCATGAGTATCATC+AGG + Chr4:69748009-69748028 MsG0480022213.01.T01:CDS 40.0%
! GGGTGAGTATTGTAATTCGA+GGG + Chr4:69748835-69748854 MsG0480022213.01.T01:intron 40.0%
! TACCTTAGTATCGAGCATGA+CGG - Chr4:69748085-69748104 None:intergenic 40.0%
! TGAGCCAATTTTGTAGCTCA+TGG - Chr4:69749089-69749108 None:intergenic 40.0%
! TGGGTGAGTATTGTAATTCG+AGG + Chr4:69748834-69748853 MsG0480022213.01.T01:intron 40.0%
! TGTTCGAAAAGGTTCTGATC+TGG + Chr4:69749349-69749368 MsG0480022213.01.T01:intron 40.0%
!! AGAACTTGCTGTTCGTACAA+TGG + Chr4:69750005-69750024 MsG0480022213.01.T01:intron 40.0%
!! CTCATATTGGTTCTACAAGG+AGG + Chr4:69750172-69750191 MsG0480022213.01.T01:CDS 40.0%
!! GCTCTCATATTGGTTCTACA+AGG + Chr4:69750169-69750188 MsG0480022213.01.T01:CDS 40.0%
AAGGAGGGACTACTGCAAAA+TGG + Chr4:69750188-69750207 MsG0480022213.01.T01:CDS 45.0%
AATGTGCCAAGGAAGGGAAA+GGG + Chr4:69750413-69750432 MsG0480022213.01.T01:CDS 45.0%
ACAGACTGTGTCATGCTTAG+TGG + Chr4:69749958-69749977 MsG0480022213.01.T01:intron 45.0%
ACTGATGTCGAATGCAGTTC+TGG + Chr4:69749930-69749949 MsG0480022213.01.T01:intron 45.0%
CAAAGTTTGCAACCCCTTCT+TGG - Chr4:69749719-69749738 None:intergenic 45.0%
CAACTTGCAAATGTATGGGC+AGG + Chr4:69749687-69749706 MsG0480022213.01.T01:intron 45.0%
GAAGAAGCTAGACTCTCCAA+TGG - Chr4:69750116-69750135 None:intergenic 45.0%
GAATTCCGGTATTTCCATGG+CGG - Chr4:69748056-69748075 None:intergenic 45.0%
GGCAGGTTAAAACCAAGAAG+GGG + Chr4:69749704-69749723 MsG0480022213.01.T01:intron 45.0%
GGGCAGGTTAAAACCAAGAA+GGG + Chr4:69749703-69749722 MsG0480022213.01.T01:intron 45.0%
TGATAATCTTAGAGCCGCCA+TGG + Chr4:69748039-69748058 MsG0480022213.01.T01:CDS 45.0%
TGCTAGAGCAGCTCTCATAT+TGG + Chr4:69750159-69750178 MsG0480022213.01.T01:CDS 45.0%
TGGGCAGGTTAAAACCAAGA+AGG + Chr4:69749702-69749721 MsG0480022213.01.T01:intron 45.0%
TGTGAGAACTCTGCTGTTCT+AGG + Chr4:69749205-69749224 MsG0480022213.01.T01:CDS 45.0%
! AAGGTATCAGTCGTTAGCTC+AGG - Chr4:69750257-69750276 None:intergenic 45.0%
!! ATGTCGAATGCAGTTCTGGA+TGG + Chr4:69749934-69749953 MsG0480022213.01.T01:intron 45.0%
!! CATAATAAATAAAAAAAAAA+GGG - Chr4:69748111-69748130 None:intergenic 5.0%
!! TCATAATAAATAAAAAAAAA+AGG - Chr4:69748112-69748131 None:intergenic 5.0%
!!! ATTTTTTATTATTTTTTTCA+TGG + Chr4:69749443-69749462 MsG0480022213.01.T01:intron 5.0%
AAAGGGACTCTGCGTTAACG+GGG + Chr4:69750430-69750449 MsG0480022213.01.T01:CDS 50.0%
ACAGAAAGAATTGGCGTGCC+TGG - Chr4:69750228-69750247 None:intergenic 50.0%
AGTGTCATACTCTGCGCAGA+TGG + Chr4:69749124-69749143 MsG0480022213.01.T01:intron 50.0%
ATCTGTGTCGCAGTAACGAC+CGG - Chr4:69749864-69749883 None:intergenic 50.0%
ATGGTGGCTAAATACAGGCC+AGG + Chr4:69750207-69750226 MsG0480022213.01.T01:intron 50.0%
CAATGTGCCAAGGAAGGGAA+AGG + Chr4:69750412-69750431 MsG0480022213.01.T01:CDS 50.0%
CGTTAACGGGGATTCTGTTG+TGG + Chr4:69750442-69750461 MsG0480022213.01.T01:CDS 50.0%
CGTTACTGCGACACAGATGT+TGG + Chr4:69749866-69749885 MsG0480022213.01.T01:intron 50.0%
CTTAGTGGTGAAACTGCTGC+TGG + Chr4:69749973-69749992 MsG0480022213.01.T01:intron 50.0%
GAAAGGGACTCTGCGTTAAC+GGG + Chr4:69750429-69750448 MsG0480022213.01.T01:CDS 50.0%
GAACAGCAGAGTTCTCACAG+CGG - Chr4:69749204-69749223 None:intergenic 50.0%
GACATCAGTAGCTTCAGCTC+TGG - Chr4:69749919-69749938 None:intergenic 50.0%
GAGGGACTACTGCAAAATGG+TGG + Chr4:69750191-69750210 MsG0480022213.01.T01:intron 50.0%
GATGCATTTATGGTGGCACG+TGG + Chr4:69749759-69749778 MsG0480022213.01.T01:intron 50.0%
GCCTTCAATGTGCCAAGGAA+GGG + Chr4:69750407-69750426 MsG0480022213.01.T01:CDS 50.0%
GGAAAGGGACTCTGCGTTAA+CGG + Chr4:69750428-69750447 MsG0480022213.01.T01:CDS 50.0%
TAGAGCCGCCATGGAAATAC+CGG + Chr4:69748048-69748067 MsG0480022213.01.T01:CDS 50.0%
TCCCTTCCTTGGCACATTGA+AGG - Chr4:69750411-69750430 None:intergenic 50.0%
TGCCTTCAATGTGCCAAGGA+AGG + Chr4:69750406-69750425 MsG0480022213.01.T01:CDS 50.0%
TTGGCTCATGATGTGAAGCC+CGG + Chr4:69749101-69749120 MsG0480022213.01.T01:intron 50.0%
! AGACTCTCCAATGGGCTCAT+GGG - Chr4:69750107-69750126 None:intergenic 50.0%
! TAGACTCTCCAATGGGCTCA+TGG - Chr4:69750108-69750127 None:intergenic 50.0%
! TCAGTAGCTTCAGCTCTGGT+TGG - Chr4:69749915-69749934 None:intergenic 50.0%
!! CAGTAACGACCGGTTTTCCT+TGG - Chr4:69749854-69749873 None:intergenic 50.0%
!! GCTGAGAGCACCATTGACTA+TGG + Chr4:69750045-69750064 MsG0480022213.01.T01:CDS 50.0%
ACCAGTACCCATGAGCCCAT+TGG + Chr4:69750097-69750116 MsG0480022213.01.T01:CDS 55.0%
CAAGCTATGTCTAGCAGGGG+CGG - Chr4:69750303-69750322 None:intergenic 55.0%
CAGAGTCCCTTTCCCTTCCT+TGG - Chr4:69750422-69750441 None:intergenic 55.0%
CATGACGGCGCAGAGAATTC+CGG - Chr4:69748070-69748089 None:intergenic 55.0%
CGCCGTCATGCTCGATACTA+AGG + Chr4:69748080-69748099 MsG0480022213.01.T01:CDS 55.0%
CTGCGCAGAGTATGACACTC+CGG - Chr4:69749123-69749142 None:intergenic 55.0%
GAGAGCTGCTCTAGCAGAGT+TGG - Chr4:69750155-69750174 None:intergenic 55.0%
GGGAAGATCACTACGACTCC+AGG - Chr4:69749253-69749272 None:intergenic 55.0%
GTAGGGCCTGAGATTCGAAC+TGG + Chr4:69748969-69748988 MsG0480022213.01.T01:CDS 55.0%
TGCGCAGAGTATGACACTCC+GGG - Chr4:69749122-69749141 None:intergenic 55.0%
! GTTGTGGTTCTGCATCGCGT+GGG + Chr4:69750458-69750477 MsG0480022213.01.T01:CDS 55.0%
! TAGCTTCAGCTCTGGTTGGC+CGG - Chr4:69749911-69749930 None:intergenic 55.0%
! TCCAATGGGCTCATGGGTAC+TGG - Chr4:69750101-69750120 None:intergenic 55.0%
! TGTTGTGGTTCTGCATCGCG+TGG + Chr4:69750457-69750476 MsG0480022213.01.T01:CDS 55.0%
ATGGTGGCACGTGGTGACCT+TGG + Chr4:69749768-69749787 MsG0480022213.01.T01:intron 60.0%
GGCACGTGGTGACCTTGGAA+TGG + Chr4:69749773-69749792 MsG0480022213.01.T01:intron 60.0%
! AGCTTCAGCTCTGGTTGGCC+GGG - Chr4:69749910-69749929 None:intergenic 60.0%
! GCTTCAGCTCTGGTTGGCCG+GGG - Chr4:69749909-69749928 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 69747980 69750517 69747980 ID=MsG0480022213.01;Name=MsG0480022213.01
Chr4 mRNA 69747980 69750517 69747980 ID=MsG0480022213.01.T01;Parent=MsG0480022213.01;Name=MsG0480022213.01.T01;_AED=0.49;_eAED=0.64;_QI=0|0|0|1|1|1|5|0|253
Chr4 exon 69747980 69748101 69747980 ID=MsG0480022213.01.T01:exon:59564;Parent=MsG0480022213.01.T01
Chr4 exon 69748932 69749029 69748932 ID=MsG0480022213.01.T01:exon:59565;Parent=MsG0480022213.01.T01
Chr4 exon 69749143 69749255 69749143 ID=MsG0480022213.01.T01:exon:59566;Parent=MsG0480022213.01.T01
Chr4 exon 69750007 69750209 69750007 ID=MsG0480022213.01.T01:exon:59567;Parent=MsG0480022213.01.T01
Chr4 exon 69750292 69750517 69750292 ID=MsG0480022213.01.T01:exon:59568;Parent=MsG0480022213.01.T01
Chr4 CDS 69747980 69748101 69747980 ID=MsG0480022213.01.T01:cds;Parent=MsG0480022213.01.T01
Chr4 CDS 69748932 69749029 69748932 ID=MsG0480022213.01.T01:cds;Parent=MsG0480022213.01.T01
Chr4 CDS 69749143 69749255 69749143 ID=MsG0480022213.01.T01:cds;Parent=MsG0480022213.01.T01
Chr4 CDS 69750007 69750209 69750007 ID=MsG0480022213.01.T01:cds;Parent=MsG0480022213.01.T01
Chr4 CDS 69750292 69750517 69750292 ID=MsG0480022213.01.T01:cds;Parent=MsG0480022213.01.T01
Gene Sequence

>MsG0480022213.01.T01

ATGAACGTTGCTAGATTCAACTTCTCTCATGGTTCTCATGAGTATCATCAGGAAACTCTTGATAATCTTAGAGCCGCCATGGAAATACCGGAATTCTCTGCGCCGTCATGCTCGATACTAAGCTTTCATCTTATGCATCTACTTACATTGCTCATTGCTGTAGGGCCTGAGATTCGAACTGGATTTCTCAAGGACGCCAAACCTATCCAACTGAAACAAGATGGAACCATATCATTTACAGTCTTATCGTGTGACAAAGAATTGGGTTTGGTTCAAGTCCGCTGTGAGAACTCTGCTGTTCTAGGCGAGAGAAAGAATGTTAATCTGCCTGGAAACTTGCTGTTCGTACAATGGCTAAAATATGTGTTGAAGCTGAGAGCACCATTGACTATGGAGATGTATTCAAAGGATAATGGAGCACTCACCAGTACCCATGAGCCCATTGGAGAGTCTAGCTTCTTCTCTGCTGTTAGAACTGCCAACTCTGCTAGAGCAGCTCTCATATTGGTTCTACAAGGAGGGACTACTGCAAAATGTGATGAGTCCGCCCCTGCTAGACATAGCTTGATATTCCGAGGATTGATTCCAATATTAAGTGCTGCTTCTGCTAGAGCTTCTCATGCAGAAACAACAGAAGATGCAATAGAATTTGCCTTCAATGTGCCAAGGAAGGGAAAGGGACTCTGCGTTAACGGGGATTCTGTTGTGGTTCTGCATCGCGTGGGTACCGCATCAATCATCAAAATCTTGACCGTGAAATGA

Protein sequence

>MsG0480022213.01.T01

MNVARFNFSHGSHEYHQETLDNLRAAMEIPEFSAPSCSILSFHLMHLLTLLIAVGPEIRTGFLKDAKPIQLKQDGTISFTVLSCDKELGLVQVRCENSAVLGERKNVNLPGNLLFVQWLKYVLKLRAPLTMEMYSKDNGALTSTHEPIGESSFFSAVRTANSARAALILVLQGGTTAKCDESAPARHSLIFRGLIPILSAASARASHAETTEDAIEFAFNVPRKGKGLCVNGDSVVVLHRVGTASIIKILTVK*