AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018479.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018479.01.T01 MTR_4g012940 80.000 95 3 1 1 95 1 79 2.05e-44 145
MsG0480018479.01.T01 MTR_4g069850 76.842 95 6 1 1 95 1 79 1.67e-42 140
MsG0480018479.01.T01 MTR_2g101890 78.495 93 4 1 3 95 5 81 9.90e-42 138
MsG0480018479.01.T01 MTR_1g097420 67.368 95 15 1 1 95 1 79 3.73e-35 121
MsG0480018479.01.T01 MTR_8g092020 63.043 92 18 1 4 95 8 83 5.52e-31 111
MsG0480018479.01.T01 MTR_1g097420 52.459 122 15 2 1 95 1 106 6.58e-29 106
MsG0480018479.01.T01 MTR_6g039490 51.579 95 30 1 1 95 1 79 4.62e-23 91.3
MsG0480018479.01.T01 MTR_1452s0010 60.294 68 11 1 28 95 1 52 2.07e-19 78.6
MsG0480018479.01.T01 MTR_8g036220 39.773 88 37 1 8 95 16 87 6.93e-14 67.0
MsG0480018479.01.T01 MTR_2g005510 35.294 102 43 2 1 95 1 86 1.87e-13 65.5
MsG0480018479.01.T01 MTR_4g098950 41.860 86 34 1 10 95 11 80 2.70e-13 65.1
MsG0480018479.01.T01 MTR_5g013900 41.860 86 34 1 10 95 11 80 2.89e-13 64.7
MsG0480018479.01.T01 MTR_4g079350 34.091 88 42 1 8 95 13 84 7.73e-13 63.9
MsG0480018479.01.T01 MTR_2g014990 34.091 88 42 1 8 95 13 84 8.31e-13 63.9
MsG0480018479.01.T01 MTR_4g088090 34.091 88 42 1 8 95 13 84 1.06e-12 63.5
MsG0480018479.01.T01 MTR_1686s0010 40.909 88 28 2 28 115 1 64 1.25e-12 60.5
MsG0480018479.01.T01 MTR_3g087160 40.698 86 35 1 10 95 11 80 2.56e-12 62.4
MsG0480018479.01.T01 MTR_8g090215 40.698 86 35 1 10 95 11 80 2.71e-12 62.4
MsG0480018479.01.T01 MTR_2g090865 34.091 88 42 1 8 95 11 82 1.20e-11 60.5
MsG0480018479.01.T01 MTR_3g069510 31.818 88 44 1 8 95 12 83 3.07e-11 59.7
MsG0480018479.01.T01 MTR_7g405790 35.227 88 41 1 8 95 15 86 5.28e-11 58.9
MsG0480018479.01.T01 MTR_4g064897 31.818 88 44 1 8 95 12 83 7.50e-11 58.5
MsG0480018479.01.T01 MTR_2g075950 31.818 88 44 1 8 95 13 84 8.15e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018479.01.T01 AT1G49300 76.842 95 6 1 1 95 1 79 1.24e-42 140
MsG0480018479.01.T01 AT1G49300 76.842 95 6 1 1 95 1 79 1.24e-42 140
MsG0480018479.01.T01 AT3G18820 76.842 95 6 1 1 95 1 79 1.36e-42 140
MsG0480018479.01.T01 AT3G16100 74.737 95 8 1 1 95 1 79 1.57e-41 138
MsG0480018479.01.T01 AT1G52280 73.684 95 9 1 1 95 1 79 1.03e-40 135
MsG0480018479.01.T01 AT1G22740 69.474 95 13 1 1 95 1 79 5.70e-37 126
MsG0480018479.01.T01 AT4G09720 65.263 95 17 1 1 95 1 79 2.20e-34 120
MsG0480018479.01.T01 AT4G09720 65.263 95 17 1 1 95 1 79 2.45e-34 119
MsG0480018479.01.T01 AT4G09720 65.263 95 17 1 1 95 1 79 2.53e-34 119
MsG0480018479.01.T01 AT2G21880 59.783 92 21 1 4 95 5 80 2.66e-29 107
MsG0480018479.01.T01 AT2G21880 54.348 92 18 1 4 95 5 72 9.57e-25 95.1
MsG0480018479.01.T01 AT2G21880 53.521 71 17 1 25 95 1 55 2.59e-16 72.8
MsG0480018479.01.T01 AT2G21880 53.521 71 17 1 25 95 1 55 2.59e-16 72.8
MsG0480018479.01.T01 AT5G64990 44.828 87 37 2 10 95 9 85 6.51e-15 69.3
MsG0480018479.01.T01 AT5G64990 43.023 86 33 1 10 95 9 78 1.63e-14 68.2
MsG0480018479.01.T01 AT5G39620 42.529 87 34 1 9 95 6 76 8.09e-14 66.2
MsG0480018479.01.T01 AT2G44610 36.000 125 59 3 10 130 11 118 1.70e-13 65.5
MsG0480018479.01.T01 AT1G28550 35.227 88 41 1 8 95 13 84 5.85e-13 64.3
MsG0480018479.01.T01 AT2G22290 37.864 103 38 2 10 102 11 97 7.83e-13 63.9
MsG0480018479.01.T01 AT5G60860 34.091 88 42 1 8 95 13 84 1.07e-12 63.5
MsG0480018479.01.T01 AT2G33870 34.091 88 42 1 8 95 13 84 1.29e-12 63.5
MsG0480018479.01.T01 AT1G05810 34.783 92 44 1 4 95 8 83 1.30e-12 63.2
MsG0480018479.01.T01 AT5G45750 34.091 88 42 1 8 95 13 84 1.82e-12 62.8
MsG0480018479.01.T01 AT1G05810 34.783 92 44 1 4 95 54 129 2.54e-12 63.2
MsG0480018479.01.T01 AT5G10260 40.698 86 35 1 10 95 11 80 3.02e-12 62.0
MsG0480018479.01.T01 AT4G09720 55.000 60 11 1 36 95 2 45 4.44e-12 61.2
MsG0480018479.01.T01 AT4G09720 55.000 60 11 1 36 95 2 45 4.44e-12 61.2
MsG0480018479.01.T01 AT4G09720 55.000 60 11 1 36 95 2 45 4.44e-12 61.2
MsG0480018479.01.T01 AT1G09630 35.227 88 41 1 8 95 12 83 4.87e-12 61.6
MsG0480018479.01.T01 AT3G15060 32.955 88 43 1 8 95 13 84 7.11e-12 61.2
MsG0480018479.01.T01 AT4G18430 32.955 88 43 1 8 95 13 84 7.18e-12 61.2
MsG0480018479.01.T01 AT4G39890 39.080 87 37 1 9 95 10 80 9.60e-12 60.8
MsG0480018479.01.T01 AT2G31680 35.227 88 41 1 8 95 12 83 1.73e-11 60.5
MsG0480018479.01.T01 AT4G18800 32.955 88 43 1 8 95 13 84 1.85e-11 60.1
MsG0480018479.01.T01 AT5G59150 32.955 88 43 1 8 95 12 83 3.19e-11 59.7
MsG0480018479.01.T01 AT1G06400 32.955 88 43 1 8 95 13 84 4.27e-11 59.3
MsG0480018479.01.T01 AT1G07410 31.818 88 44 1 8 95 12 83 8.86e-11 58.2
MsG0480018479.01.T01 AT3G46830 31.818 88 44 1 8 95 12 83 9.26e-11 58.2
MsG0480018479.01.T01 AT3G46830 31.818 88 44 1 8 95 12 83 9.26e-11 58.2
MsG0480018479.01.T01 AT1G16920 31.818 88 44 1 8 95 13 84 9.73e-11 58.2

Find 35 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTGTAAACAGGCTCTTA+TGG 0.350519 4:-5544842 None:intergenic
TCGAGATTCAAACTGTGAAT+TGG 0.376551 4:-5547155 None:intergenic
AGACAGGTTGTTCACATTGC+AGG 0.380730 4:+5544691 MsG0480018479.01.T01:CDS
GTCTTGGTGTGGCTTTCTAC+CGG 0.383425 4:+5545979 MsG0480018479.01.T01:CDS
GTCTTCAAATTGAACTTCCT+TGG 0.388732 4:-5544672 None:intergenic
GTCATTATCCTCGGTGATAG+TGG 0.400216 4:+5543777 MsG0480018479.01.T01:CDS
ATGAAACTCGAGTTGTAAAC+AGG 0.435624 4:-5544851 None:intergenic
TCTTGGTGTGGCTTTCTACC+GGG 0.439363 4:+5545980 MsG0480018479.01.T01:CDS
AGGAAGTTCAATTTGAAGAC+AGG 0.464928 4:+5544675 MsG0480018479.01.T01:CDS
CACCCAGATTTGGGATCTGC+TGG 0.465342 4:+5545939 MsG0480018479.01.T01:intron
CAAGAGCGGTTTCAGAGTCT+TGG 0.478744 4:+5545963 MsG0480018479.01.T01:CDS
CACACTTGAGCCTTTGACCA+TGG 0.498163 4:-5547186 None:intergenic
GATTGTGTCGGGCAGATACC+TGG 0.519108 4:-5547225 None:intergenic
TTGCATTTAGGTATGTGAAT+CGG 0.536926 4:+5544603 MsG0480018479.01.T01:intron
ATTGCGACATCGATTGTGTC+GGG 0.545174 4:-5547236 None:intergenic
TTGTTAAAAGTCATTATCCT+CGG 0.545319 4:+5543768 MsG0480018479.01.T01:CDS
CTCTACTCAACATTCACAGC+CGG 0.553869 4:-5547281 None:intergenic
CAACTCGAGTTTCATTTCCA+CGG 0.556190 4:+5544859 MsG0480018479.01.T01:CDS
TGGTGTTTGTTGATTATACC+AGG 0.566053 4:+5547207 MsG0480018479.01.T01:CDS
CACAATCGATGTCGCAATGG+TGG 0.569783 4:+5547241 MsG0480018479.01.T01:CDS
AATCAGTACAAGGCTACCAT+TGG 0.582311 4:+5544635 MsG0480018479.01.T01:CDS
CTTGGTGTGGCTTTCTACCG+GGG 0.583346 4:+5545981 MsG0480018479.01.T01:CDS
GCGGTTTCAGAGTCTTGGTG+TGG 0.587655 4:+5545968 MsG0480018479.01.T01:CDS
TCATTATCCTCGGTGATAGT+GGG 0.588594 4:+5543778 MsG0480018479.01.T01:CDS
GGACGACAACAGAGATCCAC+CGG 0.593538 4:+5547262 MsG0480018479.01.T01:CDS
GAATCTCGATTTGATAACCA+TGG 0.596174 4:+5547169 MsG0480018479.01.T01:CDS
GGTGAGAAAATCAGCACCAA+TGG 0.597199 4:-5544651 None:intergenic
CGACACAATCGATGTCGCAA+TGG 0.602820 4:+5547238 MsG0480018479.01.T01:CDS
GATTTGATAACCATGGTCAA+AGG 0.610761 4:+5547176 MsG0480018479.01.T01:CDS
TGGGATCTGCTGGTCAAGAG+CGG 0.615254 4:+5545949 MsG0480018479.01.T01:CDS
TACTCAACATTCACAGCCGG+TGG 0.616805 4:-5547278 None:intergenic
GAAGTTTAGTAATCAGTACA+AGG 0.630236 4:+5544625 MsG0480018479.01.T01:CDS
CATTGCGACATCGATTGTGT+CGG 0.632596 4:-5547237 None:intergenic
CATGGTCAAAGGCTCAAGTG+TGG 0.676644 4:+5547187 MsG0480018479.01.T01:CDS
AGGCATACCCACTATCACCG+AGG 0.795501 4:-5543785 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGTTATAAAATTAAAATT+TGG + Chr4:5545649-5545668 MsG0480018479.01.T01:intron 10.0%
!!! TTTTTTTTAATTTATTTGCA+GGG + Chr4:5544180-5544199 MsG0480018479.01.T01:intron 10.0%
!!! TTTTTTTTTAATTTATTTGC+AGG + Chr4:5544179-5544198 MsG0480018479.01.T01:intron 10.0%
!! AAAAATGTCATATCTATATT+TGG + Chr4:5547076-5547095 MsG0480018479.01.T01:intron 15.0%
!! AACAAATTAACCAAAAAAAA+AGG - Chr4:5546944-5546963 None:intergenic 15.0%
!! AAGAAATTGAAATTAATGAA+TGG - Chr4:5546752-5546771 None:intergenic 15.0%
!! TATAAAATTAAAATTTGGAG+AGG + Chr4:5545654-5545673 MsG0480018479.01.T01:intron 15.0%
!! TTAAATTCAAAACTAAAAAC+TGG - Chr4:5543851-5543870 None:intergenic 15.0%
!! TTAGTTTAAAAGTAATACTT+TGG - Chr4:5544398-5544417 None:intergenic 15.0%
!! TTCTTAAATAAAAAGAGATA+TGG - Chr4:5546132-5546151 None:intergenic 15.0%
!!! AAAATCAAACAATGATTTTA+AGG + Chr4:5546646-5546665 MsG0480018479.01.T01:intron 15.0%
!!! ATTTGATTGATTTTTTATTG+AGG + Chr4:5543962-5543981 MsG0480018479.01.T01:intron 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG - Chr4:5544298-5544317 None:intergenic 15.0%
!!! TGTTAAAAGAAACATTTTTT+AGG + Chr4:5544033-5544052 MsG0480018479.01.T01:intron 15.0%
!! AAAATTGAAAAATAAGAAGC+AGG - Chr4:5543808-5543827 None:intergenic 20.0%
!! AATTAACCAAAAAAAAAGGT+TGG - Chr4:5546940-5546959 None:intergenic 20.0%
!! ACTCATTTAAAGATGTTTAT+CGG + Chr4:5546792-5546811 MsG0480018479.01.T01:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - Chr4:5544337-5544356 None:intergenic 20.0%
!! ATAGAAGTAATATACAAAAC+TGG - Chr4:5545369-5545388 None:intergenic 20.0%
!! CAAATTATCCTATTAACTAT+TGG - Chr4:5544421-5544440 None:intergenic 20.0%
!! CAATAGTTAATAGGATAATT+TGG + Chr4:5544419-5544438 MsG0480018479.01.T01:intron 20.0%
!! CAATTATATATTCGCAAATA+GGG + Chr4:5546325-5546344 MsG0480018479.01.T01:intron 20.0%
!! TAAACTAACCAATAGTTAAT+AGG + Chr4:5544410-5544429 MsG0480018479.01.T01:intron 20.0%
!! TCATAACTTTGTATTATCTA+AGG + Chr4:5544800-5544819 MsG0480018479.01.T01:intron 20.0%
!!! AAACAGTATGTTATTTACAT+CGG - Chr4:5545902-5545921 None:intergenic 20.0%
!!! AAGAAAACTAAATCTAAGAT+TGG - Chr4:5544237-5544256 None:intergenic 20.0%
!!! AAGAACATACTTTCATTTTT+TGG + Chr4:5544724-5544743 MsG0480018479.01.T01:intron 20.0%
!!! ACAGATTTTATCATCAAAAA+TGG - Chr4:5544763-5544782 None:intergenic 20.0%
!!! AGTTGAAAAAACAATTTGTT+TGG + Chr4:5545411-5545430 MsG0480018479.01.T01:intron 20.0%
!!! ATTTTTTAGGTGATGAAAAA+TGG + Chr4:5544046-5544065 MsG0480018479.01.T01:intron 20.0%
!!! TCATTGATTGAAAAAGAAAA+GGG + Chr4:5543891-5543910 MsG0480018479.01.T01:intron 20.0%
!!! TGATATGTTTTTATTGTACT+TGG + Chr4:5545488-5545507 MsG0480018479.01.T01:intron 20.0%
!!! TTCATTGATTGAAAAAGAAA+AGG + Chr4:5543890-5543909 MsG0480018479.01.T01:intron 20.0%
!!! TTTTGTATATTACTTCTATC+TGG + Chr4:5545370-5545389 MsG0480018479.01.T01:intron 20.0%
! AAATGAGAGATTTACTTCAT+AGG + Chr4:5546593-5546612 MsG0480018479.01.T01:intron 25.0%
! AATGAGTAAATATGAACCTT+TGG - Chr4:5546779-5546798 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - Chr4:5544452-5544471 None:intergenic 25.0%
! ACTTGAATCTGAATTATTCT+AGG + Chr4:5546997-5547016 MsG0480018479.01.T01:intron 25.0%
! ATTATGAACTTTGTTAACCT+CGG + Chr4:5545550-5545569 MsG0480018479.01.T01:intron 25.0%
! CATAATGAGAATATCAAAGA+TGG - Chr4:5546707-5546726 None:intergenic 25.0%
! CATCTTTGATATTCTCATTA+TGG + Chr4:5546705-5546724 MsG0480018479.01.T01:intron 25.0%
! CCAATTATATATTCGCAAAT+AGG + Chr4:5546324-5546343 MsG0480018479.01.T01:intron 25.0%
! CCTATTTGCGAATATATAAT+TGG - Chr4:5546327-5546346 None:intergenic 25.0%
! CTTATAACATGCACTAAATT+TGG - Chr4:5545850-5545869 None:intergenic 25.0%
! GTCAATTAACAAATATAGCT+GGG - Chr4:5544156-5544175 None:intergenic 25.0%
! TGTCAATTAACAAATATAGC+TGG - Chr4:5544157-5544176 None:intergenic 25.0%
! TTATGCATGTCATTATTCAT+TGG + Chr4:5546556-5546575 MsG0480018479.01.T01:intron 25.0%
! TTGATATTCTCATTATGGTT+GGG + Chr4:5546710-5546729 MsG0480018479.01.T01:intron 25.0%
! TTGTTAAAAGTCATTATCCT+CGG + Chr4:5543768-5543787 MsG0480018479.01.T01:CDS 25.0%
! TTGTTTCCAATACAACAAAT+GGG - Chr4:5546219-5546238 None:intergenic 25.0%
! TTTCAATTTCTTACTTCCAA+AGG + Chr4:5546760-5546779 MsG0480018479.01.T01:intron 25.0%
! TTTGATATTCTCATTATGGT+TGG + Chr4:5546709-5546728 MsG0480018479.01.T01:intron 25.0%
! TTTGTTTCCAATACAACAAA+TGG - Chr4:5546220-5546239 None:intergenic 25.0%
!! TAATGACTTTTAACAACATG+CGG - Chr4:5543764-5543783 None:intergenic 25.0%
!! TGATTTTCTCATCAATTGTT+TGG - Chr4:5546633-5546652 None:intergenic 25.0%
!! TTATTACTATCTTCTTTTGC+AGG + Chr4:5546364-5546383 MsG0480018479.01.T01:intron 25.0%
!!! ATGATACCAACCTTTTTTTT+TGG + Chr4:5546931-5546950 MsG0480018479.01.T01:intron 25.0%
!!! TTTTAATTTATTTGCAGGGT+TGG + Chr4:5544184-5544203 MsG0480018479.01.T01:intron 25.0%
AACTCTGTACTTTGAGTATT+TGG + Chr4:5545055-5545074 MsG0480018479.01.T01:intron 30.0%
AAGTACAGAGTTTATGAGAT+AGG - Chr4:5545047-5545066 None:intergenic 30.0%
AGAATGCATTTCGAAAAAGA+CGG - Chr4:5544979-5544998 None:intergenic 30.0%
AGTACAGAGTTTATGAGATA+GGG - Chr4:5545046-5545065 None:intergenic 30.0%
CAACATTAAATCCTTCTTTG+CGG - Chr4:5546452-5546471 None:intergenic 30.0%
CACTAGAAATTTGTATCGAA+TGG - Chr4:5546865-5546884 None:intergenic 30.0%
GAAGTTTAGTAATCAGTACA+AGG + Chr4:5544625-5544644 MsG0480018479.01.T01:CDS 30.0%
GAATCTGAATTATTCTAGGT+TGG + Chr4:5547001-5547020 MsG0480018479.01.T01:intron 30.0%
GACATGCATAAAGAAAAACA+CGG - Chr4:5546547-5546566 None:intergenic 30.0%
GATATGAAGAAATCTAAGAG+TGG - Chr4:5544106-5544125 None:intergenic 30.0%
TATTTGTTCCGTTTGCATTT+AGG + Chr4:5544591-5544610 MsG0480018479.01.T01:intron 30.0%
TGACCTTTACATCATAAACA+AGG - Chr4:5546022-5546041 None:intergenic 30.0%
TTCACATACCTAAATGCAAA+CGG - Chr4:5544602-5544621 None:intergenic 30.0%
TTGCATTTAGGTATGTGAAT+CGG + Chr4:5544603-5544622 MsG0480018479.01.T01:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr4:5544500-5544519 MsG0480018479.01.T01:intron 30.0%
!! AAACTTCCCATTTGTTGTAT+TGG + Chr4:5546210-5546229 MsG0480018479.01.T01:intron 30.0%
!! ATGAAATCTCATTTTGAGTC+TGG + Chr4:5546901-5546920 MsG0480018479.01.T01:intron 30.0%
!! CAATTGACTTGTTTGAAGTT+GGG - Chr4:5545015-5545034 None:intergenic 30.0%
!! TCAATTGACTTGTTTGAAGT+TGG - Chr4:5545016-5545035 None:intergenic 30.0%
!! TTTGGTTAATTTGTTCAGCA+AGG + Chr4:5546949-5546968 MsG0480018479.01.T01:intron 30.0%
!!! AAAGTCACTTTATTTTACCG+TGG - Chr4:5544879-5544898 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr4:5544499-5544518 None:intergenic 30.0%
AATTCTTCTCTCCATGGTTA+AGG - Chr4:5546060-5546079 None:intergenic 35.0%
AGGAAGTTCAATTTGAAGAC+AGG + Chr4:5544675-5544694 MsG0480018479.01.T01:CDS 35.0%
AGTTGTGTGCAGAGTATAAT+TGG - Chr4:5544374-5544393 None:intergenic 35.0%
ATGAGAAATTCTTCTCTCCA+TGG - Chr4:5546066-5546085 None:intergenic 35.0%
CTAATTGTACACCCAGATTT+GGG + Chr4:5545930-5545949 MsG0480018479.01.T01:intron 35.0%
GAAAACTCACATTTCTCTTC+AGG - Chr4:5546519-5546538 None:intergenic 35.0%
GAAAGATCAGTGTGTATGTT+TGG + Chr4:5545797-5545816 MsG0480018479.01.T01:intron 35.0%
GAATGCATTTCGAAAAAGAC+GGG - Chr4:5544978-5544997 None:intergenic 35.0%
GGAAACAAAATAGACGTTGA+TGG + Chr4:5546231-5546250 MsG0480018479.01.T01:intron 35.0%
GTAACCAGAAACTCAAAGTA+CGG - Chr4:5545196-5545215 None:intergenic 35.0%
GTAATATACAAAACTGGACC+TGG - Chr4:5545363-5545382 None:intergenic 35.0%
GTACAGAGTTTATGAGATAG+GGG - Chr4:5545045-5545064 None:intergenic 35.0%
GTCAATATGCAATATGCCAT+TGG - Chr4:5546289-5546308 None:intergenic 35.0%
GTCTTCAAATTGAACTTCCT+TGG - Chr4:5544675-5544694 None:intergenic 35.0%
TAACCAGAAACTCAAAGTAC+GGG - Chr4:5545195-5545214 None:intergenic 35.0%
TAAGTTACTCTCTCTTCCAA+TGG + Chr4:5546270-5546289 MsG0480018479.01.T01:intron 35.0%
TCAAAGTTAGCTCAAGTGAA+AGG + Chr4:5545630-5545649 MsG0480018479.01.T01:intron 35.0%
TCGAGATTCAAACTGTGAAT+TGG - Chr4:5547158-5547177 None:intergenic 35.0%
TCTAATTGTACACCCAGATT+TGG + Chr4:5545929-5545948 MsG0480018479.01.T01:intron 35.0%
! AACAAAATAGACGTTGATGG+TGG + Chr4:5546234-5546253 MsG0480018479.01.T01:intron 35.0%
! ACAACAAATGGGAAGTTTTC+AGG - Chr4:5546208-5546227 None:intergenic 35.0%
! ATGAAACTCGAGTTGTAAAC+AGG - Chr4:5544854-5544873 None:intergenic 35.0%
! CAACAAATGGGAAGTTTTCA+GGG - Chr4:5546207-5546226 None:intergenic 35.0%
! CGTCCTTGTTTATGATGTAA+AGG + Chr4:5546016-5546035 MsG0480018479.01.T01:intron 35.0%
! GAATCTCGATTTGATAACCA+TGG + Chr4:5547169-5547188 MsG0480018479.01.T01:CDS 35.0%
! GATTTGATAACCATGGTCAA+AGG + Chr4:5547176-5547195 MsG0480018479.01.T01:CDS 35.0%
! GCACTAAATTTGGAATATCC+TGG - Chr4:5545840-5545859 None:intergenic 35.0%
! TGGTGTTTGTTGATTATACC+AGG + Chr4:5547207-5547226 MsG0480018479.01.T01:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr4:5544271-5544290 None:intergenic 35.0%
!! ACAAAATAGACGTTGATGGT+GGG + Chr4:5546235-5546254 MsG0480018479.01.T01:intron 35.0%
!! CTGAATTATTCTAGGTTGGT+AGG + Chr4:5547005-5547024 MsG0480018479.01.T01:intron 35.0%
!!! CAGATTGTTTTAAACGGAAG+AGG - Chr4:5545332-5545351 None:intergenic 35.0%
!!! GCTGTGTTTTATTTTTTGCC+AGG + Chr4:5545819-5545838 MsG0480018479.01.T01:intron 35.0%
!!! GTGCATTTTTTGCTATACAC+TGG - Chr4:5546485-5546504 None:intergenic 35.0%
AACCAGAAACTCAAAGTACG+GGG - Chr4:5545194-5545213 None:intergenic 40.0%
AATCAGTACAAGGCTACCAT+TGG + Chr4:5544635-5544654 MsG0480018479.01.T01:CDS 40.0%
ATGATAGTTGACGATGGTTG+TGG + Chr4:5545752-5545771 MsG0480018479.01.T01:intron 40.0%
CAACTCGAGTTTCATTTCCA+CGG + Chr4:5544859-5544878 MsG0480018479.01.T01:CDS 40.0%
CATTAAATCCTTCTTTGCGG+AGG - Chr4:5546449-5546468 None:intergenic 40.0%
GAACATTCCTAGAGTTGTGA+TGG - Chr4:5545113-5545132 None:intergenic 40.0%
GAGTTGTAAACAGGCTCTTA+TGG - Chr4:5544845-5544864 None:intergenic 40.0%
GATTCAATCCTCAACGGAAA+TGG + Chr4:5545299-5545318 MsG0480018479.01.T01:intron 40.0%
GGAACAAAACCATCCTTTCA+CGG - Chr4:5545158-5545177 None:intergenic 40.0%
GTGTGCAGAGTATAATTGGA+GGG - Chr4:5544370-5544389 None:intergenic 40.0%
TCATTATCCTCGGTGATAGT+GGG + Chr4:5543778-5543797 MsG0480018479.01.T01:CDS 40.0%
TCTTTCGAGAACCTTAACCA+TGG + Chr4:5546046-5546065 MsG0480018479.01.T01:intron 40.0%
TGTGTGCAGAGTATAATTGG+AGG - Chr4:5544371-5544390 None:intergenic 40.0%
TTCCTAGAGTTGTGATGGTA+TGG - Chr4:5545108-5545127 None:intergenic 40.0%
TTGTGCATGATAGTTGACGA+TGG + Chr4:5545746-5545765 MsG0480018479.01.T01:intron 40.0%
! AGGATGGATTCAATCCTCAA+CGG + Chr4:5545293-5545312 MsG0480018479.01.T01:intron 40.0%
! CCGTTTAAAACAATCTGCTG+CGG + Chr4:5545335-5545354 MsG0480018479.01.T01:intron 40.0%
!!! CCGCAGCAGATTGTTTTAAA+CGG - Chr4:5545338-5545357 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr4:5544504-5544523 MsG0480018479.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr4:5544523-5544504 None:intergenic 40.0%
AAGGCATGGTGTGCTTCAAA+GGG + Chr4:5546404-5546423 MsG0480018479.01.T01:intron 45.0%
AGACAGGTTGTTCACATTGC+AGG + Chr4:5544691-5544710 MsG0480018479.01.T01:CDS 45.0%
AGCCATACCATCACAACTCT+AGG + Chr4:5545103-5545122 MsG0480018479.01.T01:intron 45.0%
ATGGCTGACTAAATGCGAGT+AGG - Chr4:5545089-5545108 None:intergenic 45.0%
GATCAGAACCATTTCCGTTG+AGG - Chr4:5545310-5545329 None:intergenic 45.0%
GGATTGAATCCATCCTTTCG+CGG - Chr4:5545289-5545308 None:intergenic 45.0%
GGTGAGAAAATCAGCACCAA+TGG - Chr4:5544654-5544673 None:intergenic 45.0%
GGTTTCCTGAGAAGAAGCAA+AGG + Chr4:5546385-5546404 MsG0480018479.01.T01:intron 45.0%
GTCATTATCCTCGGTGATAG+TGG + Chr4:5543777-5543796 MsG0480018479.01.T01:CDS 45.0%
! AAAGGCATGGTGTGCTTCAA+AGG + Chr4:5546403-5546422 MsG0480018479.01.T01:intron 45.0%
! AACCCCGTACTTTGAGTTTC+TGG + Chr4:5545189-5545208 MsG0480018479.01.T01:intron 45.0%
! ATTGCGACATCGATTGTGTC+GGG - Chr4:5547239-5547258 None:intergenic 45.0%
! CATTGCGACATCGATTGTGT+CGG - Chr4:5547240-5547259 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr4:5544503-5544522 MsG0480018479.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr4:5544522-5544503 None:intergenic 45.0%
!!! TGGTGCTGATTTTCTCACCA+AGG + Chr4:5544655-5544674 MsG0480018479.01.T01:CDS 45.0%
AAACAATCTGCTGCGGATCC+AGG + Chr4:5545342-5545361 MsG0480018479.01.T01:intron 50.0%
CAAGAGCGGTTTCAGAGTCT+TGG + Chr4:5545963-5545982 MsG0480018479.01.T01:CDS 50.0%
CACAATCGATGTCGCAATGG+TGG + Chr4:5547241-5547260 MsG0480018479.01.T01:CDS 50.0%
CACACTTGAGCCTTTGACCA+TGG - Chr4:5547189-5547208 None:intergenic 50.0%
CATGGTCAAAGGCTCAAGTG+TGG + Chr4:5547187-5547206 MsG0480018479.01.T01:CDS 50.0%
CCATGCCTTTGCTTCTTCTC+AGG - Chr4:5546393-5546412 None:intergenic 50.0%
CCTGAGAAGAAGCAAAGGCA+TGG + Chr4:5546390-5546409 MsG0480018479.01.T01:intron 50.0%
CGACACAATCGATGTCGCAA+TGG + Chr4:5547238-5547257 MsG0480018479.01.T01:CDS 50.0%
CTTTGCGGAGGTCTCAAAGT+CGG - Chr4:5546437-5546456 None:intergenic 50.0%
GACCAGCAGATCCCAAATCT+GGG - Chr4:5545944-5545963 None:intergenic 50.0%
GCTGACTAAATGCGAGTAGG+AGG - Chr4:5545086-5545105 None:intergenic 50.0%
TACTCAACATTCACAGCCGG+TGG - Chr4:5547281-5547300 None:intergenic 50.0%
TGACCAGCAGATCCCAAATC+TGG - Chr4:5545945-5545964 None:intergenic 50.0%
TTGAATCCATCCTTTCGCGG+TGG - Chr4:5545286-5545305 None:intergenic 50.0%
! ATTTTCCGTCAAAGCAGCCG+AGG - Chr4:5545570-5545589 None:intergenic 50.0%
! GTCTTGGTGTGGCTTTCTAC+CGG + Chr4:5545979-5545998 MsG0480018479.01.T01:CDS 50.0%
! GTTAACCTCGGCTGCTTTGA+CGG + Chr4:5545562-5545581 MsG0480018479.01.T01:intron 50.0%
! TCTTGGTGTGGCTTTCTACC+GGG + Chr4:5545980-5545999 MsG0480018479.01.T01:CDS 50.0%
! TTCCTAGAGTTGTGATGGCG+TGG - Chr4:5545238-5545257 None:intergenic 50.0%
!! CTTTGAGACCTCCGCAAAGA+AGG + Chr4:5546438-5546457 MsG0480018479.01.T01:intron 50.0%
!! GGGAAGTTTTCAGGGTCAGA+TGG - Chr4:5546199-5546218 None:intergenic 50.0%
AGCCACGCCATCACAACTCT+AGG + Chr4:5545233-5545252 MsG0480018479.01.T01:intron 55.0%
AGGCATACCCACTATCACCG+AGG - Chr4:5543788-5543807 None:intergenic 55.0%
GATTGTGTCGGGCAGATACC+TGG - Chr4:5547228-5547247 None:intergenic 55.0%
GCGGTTTCAGAGTCTTGGTG+TGG + Chr4:5545968-5545987 MsG0480018479.01.T01:CDS 55.0%
GGACGACAACAGAGATCCAC+CGG + Chr4:5547262-5547281 MsG0480018479.01.T01:CDS 55.0%
GTACGGGGTTACGCGATTTC+AGG - Chr4:5545179-5545198 None:intergenic 55.0%
GTGGCGCATATAGGCAGTGA+AGG - Chr4:5545267-5545286 None:intergenic 55.0%
TACGTGTCGCCGTGAAAGGA+TGG + Chr4:5545146-5545165 MsG0480018479.01.T01:intron 55.0%
TCCTTTCACGGCGACACGTA+AGG - Chr4:5545146-5545165 None:intergenic 55.0%
TGGGATCTGCTGGTCAAGAG+CGG + Chr4:5545949-5545968 MsG0480018479.01.T01:CDS 55.0%
! CACCCAGATTTGGGATCTGC+TGG + Chr4:5545939-5545958 MsG0480018479.01.T01:intron 55.0%
! CTTGGTGTGGCTTTCTACCG+GGG + Chr4:5545981-5546000 MsG0480018479.01.T01:CDS 55.0%
CCTATATGCGCCACCGCGAA+AGG + Chr4:5545273-5545292 MsG0480018479.01.T01:intron 60.0%
CCTTTCGCGGTGGCGCATAT+AGG - Chr4:5545276-5545295 None:intergenic 60.0%
GCCTTACGTGTCGCCGTGAA+AGG + Chr4:5545142-5545161 MsG0480018479.01.T01:intron 60.0%
GGCGACACGTAAGGCAGTGA+AGG - Chr4:5545137-5545156 None:intergenic 60.0%
TATGCGCCACCGCGAAAGGA+TGG + Chr4:5545277-5545296 MsG0480018479.01.T01:intron 60.0%
GGACGCAGCAATCAGCACCC+CGG - Chr4:5546001-5546020 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 5543747 5547301 5543747 ID=MsG0480018479.01;Name=MsG0480018479.01
Chr4 mRNA 5543747 5547301 5543747 ID=MsG0480018479.01.T01;Parent=MsG0480018479.01;Name=MsG0480018479.01.T01;_AED=0.57;_eAED=0.63;_QI=0|0|0|1|0.6|0.83|6|0|157
Chr4 exon 5543747 5543799 5543747 ID=MsG0480018479.01.T01:exon:1443;Parent=MsG0480018479.01.T01
Chr4 exon 5544201 5544227 5544201 ID=MsG0480018479.01.T01:exon:1444;Parent=MsG0480018479.01.T01
Chr4 exon 5544613 5544712 5544613 ID=MsG0480018479.01.T01:exon:1445;Parent=MsG0480018479.01.T01
Chr4 exon 5544832 5544880 5544832 ID=MsG0480018479.01.T01:exon:1446;Parent=MsG0480018479.01.T01
Chr4 exon 5545946 5546002 5545946 ID=MsG0480018479.01.T01:exon:1447;Parent=MsG0480018479.01.T01
Chr4 exon 5547114 5547301 5547114 ID=MsG0480018479.01.T01:exon:1448;Parent=MsG0480018479.01.T01
Chr4 CDS 5543747 5543799 5543747 ID=MsG0480018479.01.T01:cds;Parent=MsG0480018479.01.T01
Chr4 CDS 5544201 5544227 5544201 ID=MsG0480018479.01.T01:cds;Parent=MsG0480018479.01.T01
Chr4 CDS 5544613 5544712 5544613 ID=MsG0480018479.01.T01:cds;Parent=MsG0480018479.01.T01
Chr4 CDS 5544832 5544880 5544832 ID=MsG0480018479.01.T01:cds;Parent=MsG0480018479.01.T01
Chr4 CDS 5545946 5546002 5545946 ID=MsG0480018479.01.T01:cds;Parent=MsG0480018479.01.T01
Chr4 CDS 5547114 5547301 5547114 ID=MsG0480018479.01.T01:cds;Parent=MsG0480018479.01.T01
Gene Sequence

>MsG0480018479.01.T01

ATGGCTTCTCGACGCCGCATGTTGTTAAAAGTCATTATCCTCGGTGATAGTGGGGTTGGTAAAACATCATTGATGAATCAGTATGTGAATCGGAAGTTTAGTAATCAGTACAAGGCTACCATTGGTGCTGATTTTCTCACCAAGGAAGTTCAATTTGAAGACAGGTTGTTCACATTGCAGCATAGAGAAACCATAAGAGCCTGTTTACAACTCGAGTTTCATTTCCACGATTTGGGATCTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGTGTGGCTTTCTACCGGGTTCATAATAAGATTCAATTCACTGTTTCAAAAGTATGTCTTCCAATTCACAGTTTGAATCTCGATTTGATAACCATGGTCAAAGGCTCAAGTGTGGTGTTTGTTGATTATACCAGGTATCTGCCCGACACAATCGATGTCGCAATGGTGGACGACAACAGAGATCCACCGGCTGTGAATGTTGAGTAG

Protein sequence

>MsG0480018479.01.T01

MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQHRETIRACLQLEFHFHDLGSAGQERFQSLGVAFYRVHNKIQFTVSKVCLPIHSLNLDLITMVKGSSVVFVDYTRYLPDTIDVAMVDDNRDPPAVNVE*