AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046535.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046535.01.T03 MTR_4g109550 98.507 67 1 0 1 67 392 458 7.61e-38 130
MsG0880046535.01.T03 MTR_7g087200 70.149 67 20 0 1 67 357 423 9.78e-26 97.4
MsG0880046535.01.T02 MTR_4g109550 97.653 426 10 0 1 426 33 458 0.0 844
MsG0880046535.01.T02 MTR_7g087200 46.544 434 190 7 1 426 24 423 7.90e-115 343
MsG0880046535.01.T05 MTR_4g109550 97.778 45 1 0 1 45 414 458 5.36e-22 86.3
MsG0880046535.01.T05 MTR_7g087200 62.222 45 17 0 1 45 379 423 1.48e-12 59.7
MsG0880046535.01.T04 MTR_4g109550 98.413 63 1 0 1 63 396 458 1.94e-34 121
MsG0880046535.01.T04 MTR_7g087200 69.841 63 19 0 1 63 361 423 3.43e-23 90.1
MsG0880046535.01.T01 MTR_4g109550 97.391 460 10 1 1 460 1 458 0.0 900
MsG0880046535.01.T01 MTR_7g087200 46.711 456 201 7 13 460 2 423 3.68e-124 368
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046535.01.T03 AT2G29900 83.582 67 11 0 1 67 331 397 2.11e-32 115
MsG0880046535.01.T03 AT1G08700 70.149 67 20 0 1 67 387 453 1.67e-26 99.8
MsG0880046535.01.T02 AT2G29900 58.741 429 114 8 1 426 29 397 2.58e-144 417
MsG0880046535.01.T02 AT1G08700 46.119 438 216 5 1 426 24 453 2.65e-114 342
MsG0880046535.01.T05 AT2G29900 80.000 45 9 0 1 45 353 397 1.04e-17 73.9
MsG0880046535.01.T05 AT1G08700 62.222 45 17 0 1 45 409 453 2.57e-13 61.6
MsG0880046535.01.T04 AT2G29900 84.127 63 10 0 1 63 335 397 6.82e-30 108
MsG0880046535.01.T04 AT1G08700 69.841 63 19 0 1 63 391 453 4.38e-24 92.8
MsG0880046535.01.T01 AT2G29900 59.243 449 120 8 15 460 9 397 1.33e-156 449
MsG0880046535.01.T01 AT1G08700 46.623 459 225 6 14 460 3 453 1.79e-124 370

Find 100 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGGTATTTGGTGGTTAT+TGG 0.173458 8:+74488697 MsG0880046535.01.T01:CDS
CGGCGTAACTTTGATGCTTT+TGG 0.212062 8:+74489428 MsG0880046535.01.T01:CDS
TTGAATCTCTTGATGTTCTA+AGG 0.238290 8:+74489558 MsG0880046535.01.T01:CDS
TTGGAATATTGGTTGCTTAT+TGG 0.257176 8:+74488716 MsG0880046535.01.T01:CDS
TGTTGGGCCTTTGAGGCTTT+TGG 0.259511 8:+74488819 MsG0880046535.01.T01:CDS
TTGAATTCTAGTAGCACTTA+TGG 0.278667 8:+74489120 MsG0880046535.01.T01:CDS
TTTGGTGGTTATTGGAATAT+TGG 0.308628 8:+74488705 MsG0880046535.01.T01:CDS
CGAAGATGATGAAGTTCTTC+GGG 0.312188 8:-74488206 MsG0880046536.01.T01:intron
GAGAATTTGACTCCGCAAAA+TGG 0.323418 8:+74489090 MsG0880046535.01.T01:CDS
AACAGTATTCGCGTCTGAAT+TGG 0.328014 8:-74489049 None:intergenic
TGTTATCTTGCAATTATTGC+TGG 0.331559 8:+74489402 MsG0880046535.01.T01:CDS
TTGAGGCTCGGAGGAGGTTA+TGG 0.341362 8:+74488932 MsG0880046535.01.T01:CDS
CACTTATGGCACACGTAATC+TGG 0.341865 8:+74489134 MsG0880046535.01.T01:CDS
TCGTCCGGTGCAATCAAGTT+GGG 0.344040 8:+74489306 MsG0880046535.01.T01:CDS
AGATGAAGAAATTCCGGCTT+TGG 0.353732 8:+74488861 MsG0880046535.01.T01:CDS
TGTTGCCTGTTGGGCCTTTG+AGG 0.358383 8:+74488812 MsG0880046535.01.T01:CDS
CGGTGCAATCAAGTTGGGGC+TGG 0.378912 8:+74489311 MsG0880046535.01.T01:CDS
AAACAACCTCAGATTCTTCC+TGG 0.385389 8:+74488383 MsG0880046535.01.T01:CDS
ATTTGATGTTGGAGGGAATT+GGG 0.386024 8:+74489277 MsG0880046535.01.T01:CDS
GTCGAGAGATGAAGAAATTC+CGG 0.388325 8:+74488855 MsG0880046535.01.T01:CDS
ACAACCGTTCTCGATAGTTT+AGG 0.389453 8:+74488235 MsG0880046535.01.T01:CDS
GGAATTGGGTTGGCTTCGTC+CGG 0.389791 8:+74489291 MsG0880046535.01.T01:CDS
ATGGGCTATGCTTGTTGCTA+TGG 0.393419 8:+74488765 MsG0880046535.01.T01:CDS
AAAAGCCTCAAAGGCCCAAC+AGG 0.404482 8:-74488817 None:intergenic
CTTGCAATTATTGCTGGTCT+CGG 0.408210 8:+74489408 MsG0880046535.01.T01:CDS
ACGAAGATGATGAAGTTCTT+CGG 0.408406 8:-74488207 MsG0880046536.01.T01:intron
AACCCTCACTCGCCCCTCTT+CGG 0.418914 8:-74489163 None:intergenic
AATTTGATGTTGGAGGGAAT+TGG 0.425817 8:+74489276 MsG0880046535.01.T01:CDS
GTAATGATTGTATGGATCCT+AGG 0.427565 8:+74488905 MsG0880046535.01.T01:CDS
ATAGCCCATGTTGTCCATTC+AGG 0.440477 8:-74488751 None:intergenic
GATGTTGGAGGGAATTGGGT+TGG 0.440644 8:+74489281 MsG0880046535.01.T01:CDS
GGTGCAATCAAGTTGGGGCT+GGG 0.451418 8:+74489312 MsG0880046535.01.T01:CDS
AATTCCGGCTTTGGTTTATG+AGG 0.454659 8:+74488870 MsG0880046535.01.T01:CDS
GTTCATACCATGATCAATCA+AGG 0.458259 8:-74489214 None:intergenic
TTGGCTATGGTGGAGATTGT+TGG 0.460324 8:-74488346 MsG0880046536.01.T01:CDS
TTCGTCCGGTGCAATCAAGT+TGG 0.460955 8:+74489305 MsG0880046535.01.T01:CDS
ATTGTTACTTGAAGTATTTG+TGG 0.464293 8:+74489524 MsG0880046535.01.T01:CDS
GCCGGTGAGTAATGATTGTA+TGG 0.469926 8:+74488897 MsG0880046535.01.T01:CDS
AGGAACATGCAGATTGAAAC+GGG 0.471161 8:-74488283 MsG0880046536.01.T01:CDS
TCTTCCTGGGACAAATTCCT+TGG 0.471536 8:+74488397 MsG0880046535.01.T01:CDS
GGTTTACTATGTTGCCTGAA+TGG 0.473916 8:+74488737 MsG0880046535.01.T01:CDS
AATGAGAATTTGATGTTGGA+GGG 0.476969 8:+74489270 MsG0880046535.01.T01:CDS
CGGCTTTGGTTTATGAGGCT+AGG 0.479275 8:+74488875 MsG0880046535.01.T01:CDS
AAATACTTCAAGTAACAATC+TGG 0.480209 8:-74489520 None:intergenic
CACGTTCTTAAAACTCTACA+TGG 0.480615 8:+74488504 MsG0880046535.01.T01:CDS
TTAGAACATCAAGAGATTCA+AGG 0.489353 8:-74489556 None:intergenic
TTGATCATGGTATGAACATA+CGG 0.491263 8:+74489220 MsG0880046535.01.T01:CDS
TGTTTCGTCGTATGCTATGT+TGG 0.498669 8:-74488365 None:intergenic
GAGAGTGGAAATTCAGTGTT+GGG 0.499101 8:+74488991 MsG0880046535.01.T01:CDS
TATGGATCCTAGGGTTATTG+AGG 0.504044 8:+74488915 MsG0880046535.01.T01:CDS
GAGGAACATGCAGATTGAAA+CGG 0.506157 8:-74488284 MsG0880046536.01.T01:CDS
TGCGCCAAGGAATTTGTCCC+AGG 0.508030 8:-74488401 None:intergenic
GAGCCGAAGAGGGGCGAGTG+AGG 0.518863 8:+74489160 MsG0880046535.01.T01:CDS
AAATGAGAATTTGATGTTGG+AGG 0.519030 8:+74489269 MsG0880046535.01.T01:CDS
GCCACACCCTTGATTGATCA+TGG 0.522462 8:+74489207 MsG0880046535.01.T01:CDS
TACATCGGAAATAGAAAAGA+AGG 0.526485 8:-74488480 None:intergenic
TTTGGTTTATGAGGCTAGGC+CGG 0.528177 8:+74488879 MsG0880046535.01.T01:CDS
GGAAATTCAGTGTTGGGTAG+TGG 0.531080 8:+74488997 MsG0880046535.01.T01:CDS
GTCGTATGCTATGTTGGCTA+TGG 0.532998 8:-74488359 None:intergenic
GTCAAATGAGAATTTGATGT+TGG 0.534939 8:+74489266 MsG0880046535.01.T01:CDS
GGAGGTTATGGAGAGAGAGA+AGG 0.538901 8:+74488944 MsG0880046535.01.T01:CDS
TAATGATTGTATGGATCCTA+GGG 0.542578 8:+74488906 MsG0880046535.01.T01:CDS
TGTTACGCAAGGGTATTTGG+TGG 0.548436 8:+74488690 MsG0880046535.01.T01:CDS
CTAGCCTCATAAACCAAAGC+CGG 0.550345 8:-74488874 None:intergenic
TGAGAGTGGAAATTCAGTGT+TGG 0.553481 8:+74488990 MsG0880046535.01.T01:CDS
AAGAAGGACTAAGAAGAAAG+TGG 0.555246 8:-74488464 None:intergenic
ATCCTAGGGTTATTGAGGCT+CGG 0.556002 8:+74488920 MsG0880046535.01.T01:CDS
AGTTCAACCAAAAGCCTCAA+AGG 0.556702 8:-74488826 None:intergenic
GCTACTGACACAGGTAGAGC+AGG 0.558581 8:-74489471 None:intergenic
GACGTGGCATCTTCTCCTCT+AGG 0.558699 8:-74489246 None:intergenic
AGCCGAAGAGGGGCGAGTGA+GGG 0.560291 8:+74489161 MsG0880046535.01.T01:CDS
GTATGCTATGTTGGCTATGG+TGG 0.562828 8:-74488356 None:intergenic
GGGTTATTGAGGCTCGGAGG+AGG 0.573137 8:+74488926 MsG0880046535.01.T01:CDS
CTACCTGTGTCAGTAGCACT+CGG 0.576698 8:+74489477 MsG0880046535.01.T01:CDS
ACCATGATCAATCAAGGGTG+TGG 0.578190 8:-74489208 None:intergenic
AACAACCTCAGATTCTTCCT+GGG 0.578676 8:+74488384 MsG0880046535.01.T01:CDS
CAGCCCCAACTTGATTGCAC+CGG 0.585675 8:-74489310 None:intergenic
TGTTGCCTGAATGGACAACA+TGG 0.592608 8:+74488746 MsG0880046535.01.T01:CDS
TTCGCCTAAACTATCGAGAA+CGG 0.593384 8:-74488239 MsG0880046536.01.T01:intron
TTCATACCATGATCAATCAA+GGG 0.595522 8:-74489213 None:intergenic
CTCCGAGCCTCAATAACCCT+AGG 0.598240 8:-74488922 None:intergenic
CGTCCGGTGCAATCAAGTTG+GGG 0.600203 8:+74489307 MsG0880046535.01.T01:CDS
AATCTGGTAAGAGCCGAAGA+GGG 0.604700 8:+74489150 MsG0880046535.01.T01:CDS
GCAGTTCTGATAACTGAGAG+TGG 0.610868 8:+74488976 MsG0880046535.01.T01:CDS
TGATCATGGTATGAACATAC+GGG 0.611284 8:+74489221 MsG0880046535.01.T01:CDS
TAATCTGGTAAGAGCCGAAG+AGG 0.615589 8:+74489149 MsG0880046535.01.T01:CDS
TCCATACAATCATTACTCAC+CGG 0.616281 8:-74488898 None:intergenic
TTTGTCCCAGGAAGAATCTG+AGG 0.618330 8:-74488389 None:intergenic
ATCTGGTAAGAGCCGAAGAG+GGG 0.630482 8:+74489151 MsG0880046535.01.T01:CDS
TGCAAGATAACATGCATACA+CGG 0.630702 8:-74489391 None:intergenic
AATTCAGTGTTGGGTAGTGG+TGG 0.633992 8:+74489000 MsG0880046535.01.T01:CDS
CATCAAATTCTCATTTGACG+TGG 0.634032 8:-74489262 None:intergenic
ATACCGAGTGCTACTGACAC+AGG 0.638732 8:-74489480 None:intergenic
GGCTTTGTATGATCTTGCTG+CGG 0.639777 8:+74488786 MsG0880046535.01.T01:CDS
GAGAGTTTAAAAGTGCGCCA+AGG 0.640119 8:-74488414 None:intergenic
GAAAGTTACGACAACAACGA+AGG 0.651521 8:-74488440 None:intergenic
CTAGGGTTATTGAGGCTCGG+AGG 0.692241 8:+74488923 MsG0880046535.01.T01:CDS
ATGAACATACGGGTTCCTAG+AGG 0.704926 8:+74489231 MsG0880046535.01.T01:CDS
GTTGCCTGAATGGACAACAT+GGG 0.705193 8:+74488747 MsG0880046535.01.T01:CDS
TTGAGACTAAGATTACAACG+AGG 0.832729 8:-74488303 MsG0880046536.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATCTTCTATAGTGTTT+TGG + Chr8:74489338-74489357 MsG0880046535.01.T01:CDS 20.0%
! AAAAACGTTATACAATCAAC+TGG - Chr8:74488604-74488623 None:intergenic 25.0%
! AAATACTTCAAGTAACAATC+TGG - Chr8:74489523-74489542 None:intergenic 25.0%
!! AGTTGATTGTATAACGTTTT+TGG + Chr8:74488603-74488622 MsG0880046535.01.T01:CDS 25.0%
!! ATTGTTACTTGAAGTATTTG+TGG + Chr8:74489524-74489543 MsG0880046535.01.T01:CDS 25.0%
!! TTCAAATTTGAACCATTTTG+CGG - Chr8:74489105-74489124 None:intergenic 25.0%
!!! TTTGTTGTATTAGCTTTTCT+TGG + Chr8:74488538-74488557 MsG0880046535.01.T01:CDS 25.0%
AAATGAGAATTTGATGTTGG+AGG + Chr8:74489269-74489288 MsG0880046535.01.T01:CDS 30.0%
AATGAGAATTTGATGTTGGA+GGG + Chr8:74489270-74489289 MsG0880046535.01.T01:CDS 30.0%
GTCAAATGAGAATTTGATGT+TGG + Chr8:74489266-74489285 MsG0880046535.01.T01:CDS 30.0%
TAATGATTGTATGGATCCTA+GGG + Chr8:74488906-74488925 MsG0880046535.01.T01:CDS 30.0%
TACATCGGAAATAGAAAAGA+AGG - Chr8:74488483-74488502 None:intergenic 30.0%
TGTTATCTTGCAATTATTGC+TGG + Chr8:74489402-74489421 MsG0880046535.01.T01:CDS 30.0%
TTAGAACATCAAGAGATTCA+AGG - Chr8:74489559-74489578 None:intergenic 30.0%
TTCATACCATGATCAATCAA+GGG - Chr8:74489216-74489235 None:intergenic 30.0%
TTGAATTCTAGTAGCACTTA+TGG + Chr8:74489120-74489139 MsG0880046535.01.T01:CDS 30.0%
TTGATCATGGTATGAACATA+CGG + Chr8:74489220-74489239 MsG0880046535.01.T01:CDS 30.0%
! TTGGAATATTGGTTGCTTAT+TGG + Chr8:74488716-74488735 MsG0880046535.01.T01:CDS 30.0%
! TTTGGTGGTTATTGGAATAT+TGG + Chr8:74488705-74488724 MsG0880046535.01.T01:CDS 30.0%
!!! ATCTTCTATAGTGTTTTGGT+TGG + Chr8:74489342-74489361 MsG0880046535.01.T01:CDS 30.0%
!!! GTTTTAAGAACGTGATACAT+CGG - Chr8:74488498-74488517 None:intergenic 30.0%
!!! TGCTGTTTTTATGTCGAAAA+TGG + Chr8:74488660-74488679 MsG0880046535.01.T01:CDS 30.0%
!!! TTGTGTAATTTTGCTGTTGT+TGG + Chr8:74488631-74488650 MsG0880046535.01.T01:CDS 30.0%
AAGAAGGACTAAGAAGAAAG+TGG - Chr8:74488467-74488486 None:intergenic 35.0%
AATTTGATGTTGGAGGGAAT+TGG + Chr8:74489276-74489295 MsG0880046535.01.T01:CDS 35.0%
ACGAAGATGATGAAGTTCTT+CGG - Chr8:74488210-74488229 MsG0880046536.01.T01:intron 35.0%
ATTTGATGTTGGAGGGAATT+GGG + Chr8:74489277-74489296 MsG0880046535.01.T01:CDS 35.0%
CACGTTCTTAAAACTCTACA+TGG + Chr8:74488504-74488523 MsG0880046535.01.T01:CDS 35.0%
CATCAAATTCTCATTTGACG+TGG - Chr8:74489265-74489284 None:intergenic 35.0%
GTAATGATTGTATGGATCCT+AGG + Chr8:74488905-74488924 MsG0880046535.01.T01:CDS 35.0%
GTTCATACCATGATCAATCA+AGG - Chr8:74489217-74489236 None:intergenic 35.0%
TCCATACAATCATTACTCAC+CGG - Chr8:74488901-74488920 None:intergenic 35.0%
TGATCATGGTATGAACATAC+GGG + Chr8:74489221-74489240 MsG0880046535.01.T01:CDS 35.0%
TGCAAGATAACATGCATACA+CGG - Chr8:74489394-74489413 None:intergenic 35.0%
TTGAGACTAAGATTACAACG+AGG - Chr8:74488306-74488325 MsG0880046536.01.T01:CDS 35.0%
!!! ATGGCTATTTTTGTTACGCA+AGG + Chr8:74488679-74488698 MsG0880046535.01.T01:CDS 35.0%
!!! GTTGTATTAGCTTTTCTTGG+AGG + Chr8:74488541-74488560 MsG0880046535.01.T01:CDS 35.0%
!!! TGGCTATTTTTGTTACGCAA+GGG + Chr8:74488680-74488699 MsG0880046535.01.T01:CDS 35.0%
!!! TTTTGTTACGCAAGGGTATT+TGG + Chr8:74488687-74488706 MsG0880046535.01.T01:CDS 35.0%
AAACAACCTCAGATTCTTCC+TGG + Chr8:74488383-74488402 MsG0880046535.01.T01:CDS 40.0%
AACAACCTCAGATTCTTCCT+GGG + Chr8:74488384-74488403 MsG0880046535.01.T01:CDS 40.0%
AACAGTATTCGCGTCTGAAT+TGG - Chr8:74489052-74489071 None:intergenic 40.0%
ACAACCGTTCTCGATAGTTT+AGG + Chr8:74488235-74488254 MsG0880046535.01.T01:CDS 40.0%
AGATGAAGAAATTCCGGCTT+TGG + Chr8:74488861-74488880 MsG0880046535.01.T01:CDS 40.0%
AGGAACATGCAGATTGAAAC+GGG - Chr8:74488286-74488305 MsG0880046536.01.T01:CDS 40.0%
AGTTCAACCAAAAGCCTCAA+AGG - Chr8:74488829-74488848 None:intergenic 40.0%
CGAAGATGATGAAGTTCTTC+GGG - Chr8:74488209-74488228 MsG0880046536.01.T01:intron 40.0%
GAAAGTTACGACAACAACGA+AGG - Chr8:74488443-74488462 None:intergenic 40.0%
GAGAATTTGACTCCGCAAAA+TGG + Chr8:74489090-74489109 MsG0880046535.01.T01:CDS 40.0%
GAGAGTGGAAATTCAGTGTT+GGG + Chr8:74488991-74489010 MsG0880046535.01.T01:CDS 40.0%
GAGGAACATGCAGATTGAAA+CGG - Chr8:74488287-74488306 MsG0880046536.01.T01:CDS 40.0%
GGTTTACTATGTTGCCTGAA+TGG + Chr8:74488737-74488756 MsG0880046535.01.T01:CDS 40.0%
GTCGAGAGATGAAGAAATTC+CGG + Chr8:74488855-74488874 MsG0880046535.01.T01:CDS 40.0%
TATGGATCCTAGGGTTATTG+AGG + Chr8:74488915-74488934 MsG0880046535.01.T01:CDS 40.0%
TGAGAGTGGAAATTCAGTGT+TGG + Chr8:74488990-74489009 MsG0880046535.01.T01:CDS 40.0%
TGTTTCGTCGTATGCTATGT+TGG - Chr8:74488368-74488387 None:intergenic 40.0%
TTCGCCTAAACTATCGAGAA+CGG - Chr8:74488242-74488261 MsG0880046536.01.T01:intron 40.0%
! AATTCCGGCTTTGGTTTATG+AGG + Chr8:74488870-74488889 MsG0880046535.01.T01:CDS 40.0%
! CTTGCAATTATTGCTGGTCT+CGG + Chr8:74489408-74489427 MsG0880046535.01.T01:CDS 40.0%
!! CAAGGGTATTTGGTGGTTAT+TGG + Chr8:74488697-74488716 MsG0880046535.01.T01:CDS 40.0%
!!! CTATAGTGTTTTGGTTGGCA+GGG + Chr8:74489347-74489366 MsG0880046535.01.T01:CDS 40.0%
!!! TCTATAGTGTTTTGGTTGGC+AGG + Chr8:74489346-74489365 MsG0880046535.01.T01:CDS 40.0%
AATCTGGTAAGAGCCGAAGA+GGG + Chr8:74489150-74489169 MsG0880046535.01.T01:CDS 45.0%
ACCATGATCAATCAAGGGTG+TGG - Chr8:74489211-74489230 None:intergenic 45.0%
ATAGCCCATGTTGTCCATTC+AGG - Chr8:74488754-74488773 None:intergenic 45.0%
ATCCTAGGGTTATTGAGGCT+CGG + Chr8:74488920-74488939 MsG0880046535.01.T01:CDS 45.0%
ATGAACATACGGGTTCCTAG+AGG + Chr8:74489231-74489250 MsG0880046535.01.T01:CDS 45.0%
CACTTATGGCACACGTAATC+TGG + Chr8:74489134-74489153 MsG0880046535.01.T01:CDS 45.0%
CTAGCCTCATAAACCAAAGC+CGG - Chr8:74488877-74488896 None:intergenic 45.0%
GCCGGTGAGTAATGATTGTA+TGG + Chr8:74488897-74488916 MsG0880046535.01.T01:CDS 45.0%
GTTGCCTGAATGGACAACAT+GGG + Chr8:74488747-74488766 MsG0880046535.01.T01:CDS 45.0%
TAATCTGGTAAGAGCCGAAG+AGG + Chr8:74489149-74489168 MsG0880046535.01.T01:CDS 45.0%
TCTTCCTGGGACAAATTCCT+TGG + Chr8:74488397-74488416 MsG0880046535.01.T01:CDS 45.0%
TGTTGCCTGAATGGACAACA+TGG + Chr8:74488746-74488765 MsG0880046535.01.T01:CDS 45.0%
TTTGTCCCAGGAAGAATCTG+AGG - Chr8:74488392-74488411 None:intergenic 45.0%
! AATTCAGTGTTGGGTAGTGG+TGG + Chr8:74489000-74489019 MsG0880046535.01.T01:CDS 45.0%
! ATGGGCTATGCTTGTTGCTA+TGG + Chr8:74488765-74488784 MsG0880046535.01.T01:CDS 45.0%
! CGGCGTAACTTTGATGCTTT+TGG + Chr8:74489428-74489447 MsG0880046535.01.T01:CDS 45.0%
! GAGAGTTTAAAAGTGCGCCA+AGG - Chr8:74488417-74488436 None:intergenic 45.0%
! GCAGTTCTGATAACTGAGAG+TGG + Chr8:74488976-74488995 MsG0880046535.01.T01:CDS 45.0%
! GGAAATTCAGTGTTGGGTAG+TGG + Chr8:74488997-74489016 MsG0880046535.01.T01:CDS 45.0%
! GGCTTTGTATGATCTTGCTG+CGG + Chr8:74488786-74488805 MsG0880046535.01.T01:CDS 45.0%
! GTATGCTATGTTGGCTATGG+TGG - Chr8:74488359-74488378 None:intergenic 45.0%
! GTCGTATGCTATGTTGGCTA+TGG - Chr8:74488362-74488381 None:intergenic 45.0%
! TTGGCTATGGTGGAGATTGT+TGG - Chr8:74488349-74488368 MsG0880046536.01.T01:CDS 45.0%
! TTTGGTTTATGAGGCTAGGC+CGG + Chr8:74488879-74488898 MsG0880046535.01.T01:CDS 45.0%
!! TGTTACGCAAGGGTATTTGG+TGG + Chr8:74488690-74488709 MsG0880046535.01.T01:CDS 45.0%
AAAAGCCTCAAAGGCCCAAC+AGG - Chr8:74488820-74488839 None:intergenic 50.0%
ATCTGGTAAGAGCCGAAGAG+GGG + Chr8:74489151-74489170 MsG0880046535.01.T01:CDS 50.0%
CTACCTGTGTCAGTAGCACT+CGG + Chr8:74489477-74489496 MsG0880046535.01.T01:CDS 50.0%
GATGTTGGAGGGAATTGGGT+TGG + Chr8:74489281-74489300 MsG0880046535.01.T01:CDS 50.0%
GCCACACCCTTGATTGATCA+TGG + Chr8:74489207-74489226 MsG0880046535.01.T01:CDS 50.0%
GGAGGTTATGGAGAGAGAGA+AGG + Chr8:74488944-74488963 MsG0880046535.01.T01:CDS 50.0%
TCGTCCGGTGCAATCAAGTT+GGG + Chr8:74489306-74489325 MsG0880046535.01.T01:CDS 50.0%
TTCGTCCGGTGCAATCAAGT+TGG + Chr8:74489305-74489324 MsG0880046535.01.T01:CDS 50.0%
! ATACCGAGTGCTACTGACAC+AGG - Chr8:74489483-74489502 None:intergenic 50.0%
! CGGCTTTGGTTTATGAGGCT+AGG + Chr8:74488875-74488894 MsG0880046535.01.T01:CDS 50.0%
!!! CTGCGGTTTTGTTGCCTGTT+GGG + Chr8:74488803-74488822 MsG0880046535.01.T01:CDS 50.0%
!!! TGTTGGGCCTTTGAGGCTTT+TGG + Chr8:74488819-74488838 MsG0880046535.01.T01:CDS 50.0%
CAGCCCCAACTTGATTGCAC+CGG - Chr8:74489313-74489332 None:intergenic 55.0%
CTAGGGTTATTGAGGCTCGG+AGG + Chr8:74488923-74488942 MsG0880046535.01.T01:CDS 55.0%
CTCCGAGCCTCAATAACCCT+AGG - Chr8:74488925-74488944 None:intergenic 55.0%
GACGTGGCATCTTCTCCTCT+AGG - Chr8:74489249-74489268 None:intergenic 55.0%
GCTACTGACACAGGTAGAGC+AGG - Chr8:74489474-74489493 None:intergenic 55.0%
TGCGCCAAGGAATTTGTCCC+AGG - Chr8:74488404-74488423 None:intergenic 55.0%
TGTTGCCTGTTGGGCCTTTG+AGG + Chr8:74488812-74488831 MsG0880046535.01.T01:CDS 55.0%
TTGAGGCTCGGAGGAGGTTA+TGG + Chr8:74488932-74488951 MsG0880046535.01.T01:CDS 55.0%
! CGTCCGGTGCAATCAAGTTG+GGG + Chr8:74489307-74489326 MsG0880046535.01.T01:CDS 55.0%
!! GGAATTGGGTTGGCTTCGTC+CGG + Chr8:74489291-74489310 MsG0880046535.01.T01:CDS 55.0%
!! GGTGCAATCAAGTTGGGGCT+GGG + Chr8:74489312-74489331 MsG0880046535.01.T01:CDS 55.0%
!!! GCTGCGGTTTTGTTGCCTGT+TGG + Chr8:74488802-74488821 MsG0880046535.01.T01:CDS 55.0%
AACCCTCACTCGCCCCTCTT+CGG - Chr8:74489166-74489185 None:intergenic 60.0%
GGGTTATTGAGGCTCGGAGG+AGG + Chr8:74488926-74488945 MsG0880046535.01.T01:CDS 60.0%
!! CGGTGCAATCAAGTTGGGGC+TGG + Chr8:74489311-74489330 MsG0880046535.01.T01:CDS 60.0%
AGCCGAAGAGGGGCGAGTGA+GGG + Chr8:74489161-74489180 MsG0880046535.01.T01:CDS 65.0%
GAGCCGAAGAGGGGCGAGTG+AGG + Chr8:74489160-74489179 MsG0880046535.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 74488196 74489578 74488196 ID=MsG0880046535.01;Name=MsG0880046535.01
Chr8 mRNA 74488196 74489578 74488196 ID=MsG0880046535.01.T01;Parent=MsG0880046535.01;Name=MsG0880046535.01.T01;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|460
Chr8 exon 74488196 74489578 74488196 ID=MsG0880046535.01.T01:exon:31047;Parent=MsG0880046535.01.T01
Chr8 CDS 74488196 74489578 74488196 ID=MsG0880046535.01.T01:cds;Parent=MsG0880046535.01.T01
Chr8 mRNA 74488298 74489578 74488298 ID=MsG0880046535.01.T02;Parent=MsG0880046535.01;Name=MsG0880046535.01.T02;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|426
Chr8 exon 74488298 74489578 74488298 ID=MsG0880046535.01.T02:exon:31048;Parent=MsG0880046535.01.T02
Chr8 CDS 74488298 74489578 74488298 ID=MsG0880046535.01.T02:cds;Parent=MsG0880046535.01.T02
Chr8 mRNA 74489375 74489578 74489375 ID=MsG0880046535.01.T03;Parent=MsG0880046535.01;Name=MsG0880046535.01.T03;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|67
Chr8 exon 74489375 74489578 74489375 ID=MsG0880046535.01.T03:exon:31049;Parent=MsG0880046535.01.T03
Chr8 CDS 74489375 74489578 74489375 ID=MsG0880046535.01.T03:cds;Parent=MsG0880046535.01.T03
Chr8 mRNA 74489387 74489578 74489387 ID=MsG0880046535.01.T04;Parent=MsG0880046535.01;Name=MsG0880046535.01.T04;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|63
Chr8 exon 74489387 74489578 74489387 ID=MsG0880046535.01.T04:exon:31050;Parent=MsG0880046535.01.T04
Chr8 CDS 74489387 74489578 74489387 ID=MsG0880046535.01.T04:cds;Parent=MsG0880046535.01.T04
Chr8 mRNA 74489441 74489578 74489441 ID=MsG0880046535.01.T05;Parent=MsG0880046535.01;Name=MsG0880046535.01.T05;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|0|1|0|45
Chr8 exon 74489441 74489578 74489441 ID=MsG0880046535.01.T05:exon:31051;Parent=MsG0880046535.01.T05
Chr8 CDS 74489441 74489578 74489441 ID=MsG0880046535.01.T05:cds;Parent=MsG0880046535.01.T05
Gene Sequence

>MsG0880046535.01.T03

ATGTATGATTTTATGACCGTGTATGCATGTTATCTTGCAATTATTGCTGGTCTCGGCGTAACTTTGATGCTTTTGGCTTTATATCAGAAAGCGTTGCCTGCTCTACCTGTGTCAGTAGCACTCGGTATGTTGTTTTATTTCTTGACCAGATTGTTACTTGAAGTATTTGTGGTACAATGTTCCTTGAATCTCTTGATGTTCTAA

>MsG0880046535.01.T02

ATGTTCCTCGTTGTAATCTTAGTCTCAATTCTCAACACAAACGATTCTCCAACAATCTCCACCATAGCCAACATAGCATACGACGAAACAACCTCAGATTCTTCCTGGGACAAATTCCTTGGCGCACTTTTAAACTCTCTCTCCTTCGTTGTTGTCGTAACTTTCGCCACTTTCTTCTTAGTCCTTCTTTTCTATTTCCGATGTATCACGTTCTTAAAACTCTACATGGCTTTTTCTTCTTTTGTTGTATTAGCTTTTCTTGGAGGTGAAATTTCGATTTTTTTGATTCAACATTTTAGTGTTCCAGTTGATTGTATAACGTTTTTGGTTGTTTTGTGTAATTTTGCTGTTGTTGGTGTTTGTGCTGTTTTTATGTCGAAAATGGCTATTTTTGTTACGCAAGGGTATTTGGTGGTTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTGCCTGAATGGACAACATGGGCTATGCTTGTTGCTATGGCTTTGTATGATCTTGCTGCGGTTTTGTTGCCTGTTGGGCCTTTGAGGCTTTTGGTTGAACTTGCTATGTCGAGAGATGAAGAAATTCCGGCTTTGGTTTATGAGGCTAGGCCGGTGAGTAATGATTGTATGGATCCTAGGGTTATTGAGGCTCGGAGGAGGTTATGGAGAGAGAGAAGGATTGAGAGTGCAGTTCTGATAACTGAGAGTGGAAATTCAGTGTTGGGTAGTGGTGGACTTAATGTTGAACAATCATCACATTCCAATTCAGACGCGAATACTGTTCTAAGTACAAATTCAAATGAGAATTTGACTCCGCAAAATGGTTCAAATTTGAATTCTAGTAGCACTTATGGCACACGTAATCTGGTAAGAGCCGAAGAGGGGCGAGTGAGGGTTCGAGAAATTGATTCAGATCTCGCCACACCCTTGATTGATCATGGTATGAACATACGGGTTCCTAGAGGAGAAGATGCCACGTCAAATGAGAATTTGATGTTGGAGGGAATTGGGTTGGCTTCGTCCGGTGCAATCAAGTTGGGGCTGGGCGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACCGTGTATGCATGTTATCTTGCAATTATTGCTGGTCTCGGCGTAACTTTGATGCTTTTGGCTTTATATCAGAAAGCGTTGCCTGCTCTACCTGTGTCAGTAGCACTCGGTATGTTGTTTTATTTCTTGACCAGATTGTTACTTGAAGTATTTGTGGTACAATGTTCCTTGAATCTCTTGATGTTCTAA

>MsG0880046535.01.T05

ATGCTTTTGGCTTTATATCAGAAAGCGTTGCCTGCTCTACCTGTGTCAGTAGCACTCGGTATGTTGTTTTATTTCTTGACCAGATTGTTACTTGAAGTATTTGTGGTACAATGTTCCTTGAATCTCTTGATGTTCTAA

>MsG0880046535.01.T04

ATGACCGTGTATGCATGTTATCTTGCAATTATTGCTGGTCTCGGCGTAACTTTGATGCTTTTGGCTTTATATCAGAAAGCGTTGCCTGCTCTACCTGTGTCAGTAGCACTCGGTATGTTGTTTTATTTCTTGACCAGATTGTTACTTGAAGTATTTGTGGTACAATGTTCCTTGAATCTCTTGATGTTCTAA

>MsG0880046535.01.T01

ATGGCAGAAACCCGAAGAACTTCATCATCTTCGTCTTCAACAACCGTTCTCGATAGTTTAGGCGAAGAAATCGTTAGAATTATCACTCCCGTTTCAATCTGCATGTTCCTCGTTGTAATCTTAGTCTCAATTCTCAACACAAACGATTCTCCAACAATCTCCACCATAGCCAACATAGCATACGACGAAACAACCTCAGATTCTTCCTGGGACAAATTCCTTGGCGCACTTTTAAACTCTCTCTCCTTCGTTGTTGTCGTAACTTTCGCCACTTTCTTCTTAGTCCTTCTTTTCTATTTCCGATGTATCACGTTCTTAAAACTCTACATGGCTTTTTCTTCTTTTGTTGTATTAGCTTTTCTTGGAGGTGAAATTTCGATTTTTTTGATTCAACATTTTAGTGTTCCAGTTGATTGTATAACGTTTTTGGTTGTTTTGTGTAATTTTGCTGTTGTTGGTGTTTGTGCTGTTTTTATGTCGAAAATGGCTATTTTTGTTACGCAAGGGTATTTGGTGGTTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTGCCTGAATGGACAACATGGGCTATGCTTGTTGCTATGGCTTTGTATGATCTTGCTGCGGTTTTGTTGCCTGTTGGGCCTTTGAGGCTTTTGGTTGAACTTGCTATGTCGAGAGATGAAGAAATTCCGGCTTTGGTTTATGAGGCTAGGCCGGTGAGTAATGATTGTATGGATCCTAGGGTTATTGAGGCTCGGAGGAGGTTATGGAGAGAGAGAAGGATTGAGAGTGCAGTTCTGATAACTGAGAGTGGAAATTCAGTGTTGGGTAGTGGTGGACTTAATGTTGAACAATCATCACATTCCAATTCAGACGCGAATACTGTTCTAAGTACAAATTCAAATGAGAATTTGACTCCGCAAAATGGTTCAAATTTGAATTCTAGTAGCACTTATGGCACACGTAATCTGGTAAGAGCCGAAGAGGGGCGAGTGAGGGTTCGAGAAATTGATTCAGATCTCGCCACACCCTTGATTGATCATGGTATGAACATACGGGTTCCTAGAGGAGAAGATGCCACGTCAAATGAGAATTTGATGTTGGAGGGAATTGGGTTGGCTTCGTCCGGTGCAATCAAGTTGGGGCTGGGCGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACCGTGTATGCATGTTATCTTGCAATTATTGCTGGTCTCGGCGTAACTTTGATGCTTTTGGCTTTATATCAGAAAGCGTTGCCTGCTCTACCTGTGTCAGTAGCACTCGGTATGTTGTTTTATTTCTTGACCAGATTGTTACTTGAAGTATTTGTGGTACAATGTTCCTTGAATCTCTTGATGTTCTAA

Protein sequence

>MsG0880046535.01.T03

MYDFMTVYACYLAIIAGLGVTLMLLALYQKALPALPVSVALGMLFYFLTRLLLEVFVVQCSLNLLMF*

>MsG0880046535.01.T02

MFLVVILVSILNTNDSPTISTIANIAYDETTSDSSWDKFLGALLNSLSFVVVVTFATFFLVLLFYFRCITFLKLYMAFSSFVVLAFLGGEISIFLIQHFSVPVDCITFLVVLCNFAVVGVCAVFMSKMAIFVTQGYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAMSRDEEIPALVYEARPVSNDCMDPRVIEARRRLWRERRIESAVLITESGNSVLGSGGLNVEQSSHSNSDANTVLSTNSNENLTPQNGSNLNSSSTYGTRNLVRAEEGRVRVREIDSDLATPLIDHGMNIRVPRGEDATSNENLMLEGIGLASSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLALYQKALPALPVSVALGMLFYFLTRLLLEVFVVQCSLNLLMF*

>MsG0880046535.01.T05

MLLALYQKALPALPVSVALGMLFYFLTRLLLEVFVVQCSLNLLMF*

>MsG0880046535.01.T04

MTVYACYLAIIAGLGVTLMLLALYQKALPALPVSVALGMLFYFLTRLLLEVFVVQCSLNLLMF*

>MsG0880046535.01.T01

MAETRRTSSSSSSTTVLDSLGEEIVRIITPVSICMFLVVILVSILNTNDSPTISTIANIAYDETTSDSSWDKFLGALLNSLSFVVVVTFATFFLVLLFYFRCITFLKLYMAFSSFVVLAFLGGEISIFLIQHFSVPVDCITFLVVLCNFAVVGVCAVFMSKMAIFVTQGYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAMSRDEEIPALVYEARPVSNDCMDPRVIEARRRLWRERRIESAVLITESGNSVLGSGGLNVEQSSHSNSDANTVLSTNSNENLTPQNGSNLNSSSTYGTRNLVRAEEGRVRVREIDSDLATPLIDHGMNIRVPRGEDATSNENLMLEGIGLASSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLALYQKALPALPVSVALGMLFYFLTRLLLEVFVVQCSLNLLMF*