AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026505.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026505.01.T01 MTR_5g045520 97.462 197 5 0 161 357 14 210 6.54e-132 389
MsG0580026505.01.T01 MTR_5g045520 78.659 164 32 2 323 484 266 428 9.69e-69 226
MsG0580026505.01.T01 MTR_5g045520 98.370 184 3 0 174 357 1 184 2.44e-124 369
MsG0580026505.01.T01 MTR_5g045520 78.659 164 32 2 323 484 240 402 1.01e-68 225
MsG0580026505.01.T01 MTR_5g044710 84.530 181 22 2 174 354 1 175 3.47e-102 311
MsG0580026505.01.T01 MTR_5g044710 72.121 165 39 3 323 483 236 397 7.10e-59 199
MsG0580026505.01.T01 MTR_5g045530 79.096 177 34 1 174 350 1 174 2.46e-87 273
MsG0580026505.01.T01 MTR_5g045530 88.333 120 14 0 364 483 282 401 1.09e-57 196
MsG0580026505.01.T01 MTR_5g044710 72.121 165 39 3 323 483 162 323 8.76e-60 199
MsG0580026505.01.T01 MTR_5g044710 88.350 103 9 1 252 354 2 101 1.04e-52 181
MsG0580026505.01.T01 MTR_8g018120 50.893 112 41 1 50 161 146 243 1.36e-28 114
MsG0580026505.01.T01 MTR_6g472230 38.065 155 96 0 7 161 51 205 1.59e-27 117
MsG0580026505.01.T01 MTR_3g093120 34.247 146 95 1 13 158 377 521 8.31e-22 99.0
MsG0580026505.01.T01 MTR_3g448730 35.000 120 77 1 42 161 101 219 3.34e-19 87.0
MsG0580026505.01.T01 MTR_6g035385 40.870 115 51 3 1 115 81 178 2.28e-17 80.1
MsG0580026505.01.T01 MTR_8g059225 37.143 105 65 1 24 128 71 174 3.44e-15 73.9
MsG0580026505.01.T01 MTR_6g488040 53.704 54 25 0 22 75 80 133 2.37e-14 70.5
MsG0580026505.01.T01 MTR_4g052330 49.206 63 32 0 50 112 17 79 3.11e-13 65.9
MsG0580026505.01.T01 MTR_2g075320 27.941 136 81 1 13 148 151 269 2.34e-11 65.1
MsG0580026505.01.T01 MTR_3g022740 25.153 163 95 1 4 166 36 171 6.43e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026505.01.T01 AT2G03600 54.688 320 68 5 174 419 1 317 2.55e-109 327
MsG0580026505.01.T01 AT2G03530 85.246 183 27 0 174 356 1 183 8.86e-106 321
MsG0580026505.01.T01 AT2G03530 80.000 120 24 0 364 483 279 398 1.96e-53 185
MsG0580026505.01.T01 AT2G03530 85.246 183 27 0 174 356 1 183 8.86e-106 321
MsG0580026505.01.T01 AT2G03530 80.000 120 24 0 364 483 279 398 1.96e-53 185
MsG0580026505.01.T01 AT2G03530 85.246 183 27 0 174 356 1 183 5.10e-105 322
MsG0580026505.01.T01 AT2G03530 79.592 98 20 0 364 461 279 376 6.01e-41 153
MsG0580026505.01.T01 AT2G03590 75.410 183 42 1 174 356 1 180 8.31e-95 292
MsG0580026505.01.T01 AT2G03590 64.848 165 51 2 323 483 229 390 4.52e-51 178
MsG0580026505.01.T01 AT2G03590 75.410 183 42 1 174 356 1 180 8.31e-95 292
MsG0580026505.01.T01 AT2G03590 64.848 165 51 2 323 483 229 390 4.52e-51 178
MsG0580026505.01.T01 AT2G03600 73.770 183 45 1 174 356 1 180 9.37e-95 287
MsG0580026505.01.T01 AT2G03600 73.770 183 45 1 174 356 1 180 9.37e-95 287
MsG0580026505.01.T01 AT2G03600 73.370 184 46 1 174 357 1 181 1.56e-92 285
MsG0580026505.01.T01 AT2G03600 56.977 86 30 2 341 419 240 325 6.74e-22 97.1
MsG0580026505.01.T01 AT2G03520 74.719 178 45 0 174 351 1 178 1.62e-89 279
MsG0580026505.01.T01 AT2G03520 75.833 120 29 0 364 483 282 401 8.02e-47 167
MsG0580026505.01.T01 AT2G03600 65.217 207 46 2 174 357 1 204 5.47e-89 273
MsG0580026505.01.T01 AT1G26440 71.351 185 51 1 167 349 2 186 2.11e-81 258
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 290 409 1.95e-56 193
MsG0580026505.01.T01 AT1G26440 71.351 185 51 1 167 349 2 186 2.11e-81 258
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 290 409 1.95e-56 193
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 182 301 1.84e-57 192
MsG0580026505.01.T01 AT1G26440 47.959 98 16 1 252 349 16 78 3.99e-19 88.2
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 217 336 2.92e-57 193
MsG0580026505.01.T01 AT1G26440 74.490 98 25 0 252 349 16 113 3.59e-42 153
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 217 336 2.92e-57 193
MsG0580026505.01.T01 AT1G26440 74.490 98 25 0 252 349 16 113 3.59e-42 153
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 228 347 3.72e-57 193
MsG0580026505.01.T01 AT1G26440 70.707 99 27 1 167 263 2 100 2.14e-35 135
MsG0580026505.01.T01 AT1G26440 57.297 185 42 2 167 349 2 151 1.13e-56 193
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 254 373 1.24e-56 193
MsG0580026505.01.T01 AT1G26440 57.297 185 42 2 167 349 2 151 1.16e-56 193
MsG0580026505.01.T01 AT1G26440 76.667 120 28 0 364 483 255 374 1.27e-56 193
MsG0580026505.01.T01 AT2G03530 80.000 120 24 0 364 483 194 313 1.59e-54 185
MsG0580026505.01.T01 AT2G03530 82.653 98 17 0 259 356 1 98 3.66e-47 166
MsG0580026505.01.T01 AT2G03530 80.000 120 24 0 364 483 194 313 1.59e-54 185
MsG0580026505.01.T01 AT2G03530 82.653 98 17 0 259 356 1 98 3.66e-47 166
MsG0580026505.01.T01 AT2G03600 73.737 99 26 0 259 357 1 99 1.06e-43 152
MsG0580026505.01.T01 AT4G23160 32.877 146 95 2 6 150 435 578 1.19e-15 80.5
MsG0580026505.01.T01 AT4G23160 32.877 146 95 2 6 150 435 578 1.19e-15 80.5

Find 113 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATCATTGACAAATTATT+TGG 0.104477 5:-38636730 MsG0580026505.01.T01:CDS
TGGGAATGGCCTTCAGTTTA+TGG 0.150076 5:-38636655 MsG0580026505.01.T01:CDS
GCTGGTTTCCTTTGTGGATT+TGG 0.163759 5:-38636675 MsG0580026505.01.T01:CDS
GCAAGTTGAGTTAAGAAATT+TGG 0.189492 5:+38638602 None:intergenic
GGCATGTGCTATTGGATTCT+TGG 0.212655 5:+38641001 None:intergenic
TGGAAGAGGCTGGGCCTTGC+TGG 0.226976 5:-38636697 MsG0580026505.01.T01:CDS
TTACTCAATCACCAATTTCT+TGG 0.250935 5:-38638681 MsG0580026505.01.T01:CDS
CTGGTTTCCTTTGTGGATTT+GGG 0.265773 5:-38636674 MsG0580026505.01.T01:CDS
ATTGTTACTTGCAGGATAAT+TGG 0.271037 5:-38638339 MsG0580026505.01.T01:intron
TTGCAGCTTGTAAAGCAATT+TGG 0.273092 5:-38641109 MsG0580026505.01.T01:CDS
CTTGAGCTTAGCTTGATTAT+CGG 0.289315 5:+38637911 None:intergenic
CAGCATTATTGAACTTGAAT+AGG 0.310593 5:+38641207 None:intergenic
ATCCTCCTGGCATGTGCTAT+TGG 0.311338 5:+38640993 None:intergenic
CACAAATGTATATAGTAATA+AGG 0.321507 5:-38636173 MsG0580026505.01.T01:three_prime_UTR
GCAAGCATAACCGTTGTTAT+AGG 0.323418 5:-38638208 MsG0580026505.01.T01:intron
TTGCTGGCTGGTTTCCTTTG+TGG 0.325240 5:-38636681 MsG0580026505.01.T01:CDS
TGCTGAGTTGAAAATGTATT+TGG 0.325479 5:-38638825 MsG0580026505.01.T01:CDS
GATAATAGCAGCCAAGAAAT+TGG 0.327869 5:+38638670 None:intergenic
ATTATCATTGCGTTTACATT+TGG 0.351856 5:-38638653 MsG0580026505.01.T01:CDS
GGGAATGGCCTTCAGTTTAT+GGG 0.352549 5:-38636654 MsG0580026505.01.T01:CDS
ACATTTGGTCAGATAGGAAA+TGG 0.356798 5:-38638638 MsG0580026505.01.T01:CDS
AGAGGCTGGGCCTTGCTGGC+TGG 0.370965 5:-38636693 MsG0580026505.01.T01:CDS
AGGAAGAACATATATCTTAC+TGG 0.373403 5:-38636313 MsG0580026505.01.T01:CDS
GAAGGAAAGACTGGGCTGAT+AGG 0.374435 5:-38641287 MsG0580026505.01.T01:CDS
GCGTTTACATTTGGTCAGAT+AGG 0.379460 5:-38638644 MsG0580026505.01.T01:CDS
TGTGAGTTCAAACTAATCAT+TGG 0.388279 5:+38636192 None:intergenic
ATTTGCTCTAGTTGGGCTTT+CGG 0.397670 5:-38638248 MsG0580026505.01.T01:CDS
CAGTATGCATTTGCTCTAGT+TGG 0.397774 5:-38638256 MsG0580026505.01.T01:CDS
GGTGTGCTCATGGCATCATC+AGG 0.399673 5:-38636258 MsG0580026505.01.T01:CDS
GGTGGTGTGGTCCTTAGCCT+TGG 0.413336 5:-38638292 MsG0580026505.01.T01:CDS
TCATCATTGACAAATTATTT+GGG 0.414871 5:-38636729 MsG0580026505.01.T01:CDS
TGACAAATTATTTGGGAGAC+TGG 0.417397 5:-38636722 MsG0580026505.01.T01:CDS
TTTCTTAACTCAACTTGCTC+AGG 0.423669 5:-38638597 MsG0580026505.01.T01:intron
TTCCTTTGTGGATTTGGGAA+TGG 0.434124 5:-38636669 MsG0580026505.01.T01:CDS
TTTATGTTTATTGTGGCTGT+TGG 0.443744 5:-38636279 MsG0580026505.01.T01:CDS
AGTATGCATTTGCTCTAGTT+GGG 0.460950 5:-38638255 MsG0580026505.01.T01:CDS
GCTAGCAAGGAAGGAAAGAC+TGG 0.462211 5:-38641296 MsG0580026505.01.T01:CDS
TGTGGCTGTTGGTGTGCTCA+TGG 0.472927 5:-38636268 MsG0580026505.01.T01:CDS
GGAGAATATAGGAAATCATC+AGG 0.478060 5:-38636333 MsG0580026505.01.T01:CDS
TTTCCTTCCTTGCTAGCAGT+TGG 0.479174 5:+38641302 None:intergenic
GTGGTGTGGTCCTTAGCCTT+GGG 0.483800 5:-38638291 MsG0580026505.01.T01:CDS
GAGAGTAAAGGAGGTGCCAT+AGG 0.485164 5:-38638800 MsG0580026505.01.T01:CDS
ATCATGAAACAAGTGACAAA+AGG 0.486440 5:-38640945 MsG0580026505.01.T01:CDS
TCAGTAATGTTTGCAATGGC+AGG 0.486775 5:-38638313 MsG0580026505.01.T01:CDS
AAGGAAAGACTGGGCTGATA+GGG 0.489560 5:-38641286 MsG0580026505.01.T01:CDS
AGTTCAAGACAGGGTGGTAA+AGG 0.491004 5:+38636760 None:intergenic
TTTCATGATGAAATAGAACT+TGG 0.491960 5:+38640959 None:intergenic
GGTTTCAATGTGTATCCTCC+TGG 0.492179 5:+38640980 None:intergenic
CATTTGGTCAGATAGGAAAT+GGG 0.496722 5:-38638637 MsG0580026505.01.T01:CDS
GACTTGGGTAAGTTCAAGAC+AGG 0.501949 5:+38636750 None:intergenic
TATTACACGAATGTTAACTT+TGG 0.502101 5:+38636070 None:intergenic
TGCAGCAGCTGATGCTGTCC+AGG 0.503952 5:-38636613 MsG0580026505.01.T01:intron
TGTAATAAAATATTTATCCA+AGG 0.512134 5:-38636054 MsG0580026505.01.T01:three_prime_UTR
TGCCATAGGGTGCATGCTGT+TGG 0.512313 5:-38638786 MsG0580026505.01.T01:CDS
AGCCAACAGCATGCACCCTA+TGG 0.513094 5:+38638784 None:intergenic
TATGTTGTTTATGTTTATTG+TGG 0.518587 5:-38636286 MsG0580026505.01.T01:CDS
AATTATTTGGGAGACTGGAA+TGG 0.521853 5:-38636717 MsG0580026505.01.T01:CDS
GAGACTGGAATGGAAGAGGC+TGG 0.524923 5:-38636707 MsG0580026505.01.T01:CDS
TTTCCAACTGCTAGCAAGGA+AGG 0.525242 5:-38641305 MsG0580026505.01.T01:CDS
ATAATTTGTCAATGATGACT+TGG 0.527562 5:+38636734 None:intergenic
TTGGGAGACTGGAATGGAAG+AGG 0.530432 5:-38636711 MsG0580026505.01.T01:CDS
ACTGAAATTCAACTTGCAGA+TGG 0.534366 5:-38640897 MsG0580026505.01.T01:CDS
ATGTATTTGGTGGAGAGTAA+AGG 0.536406 5:-38638812 MsG0580026505.01.T01:CDS
AACTCCTGGGAAAAGAATCT+CGG 0.540525 5:+38637989 None:intergenic
TTGGCTAGACAATGTGATGA+AGG 0.543218 5:-38641090 MsG0580026505.01.T01:CDS
GGAAGAACATATATCTTACT+GGG 0.545902 5:-38636312 MsG0580026505.01.T01:CDS
TTTATGGGAGGTCAAGCTGC+TGG 0.548399 5:-38636639 MsG0580026505.01.T01:CDS
GATGTTTCCAACTGCTAGCA+AGG 0.548971 5:-38641309 MsG0580026505.01.T01:CDS
TACAAGGCTAATGTTAACCT+TGG 0.550723 5:+38636037 None:intergenic
AGAATCCAATAGCACATGCC+AGG 0.552061 5:-38640998 MsG0580026505.01.T01:CDS
TCTGCAAGTTGAATTTCAGT+AGG 0.555154 5:+38640900 None:intergenic
ACAAAGGAAACCAGCCAGCA+AGG 0.557066 5:+38636683 None:intergenic
CGGTGAGATACCTATAACAA+CGG 0.557886 5:+38638198 None:intergenic
TAATTTGTCAATGATGACTT+GGG 0.560239 5:+38636735 None:intergenic
GCCCTCAGTAATGTTTGCAA+TGG 0.568356 5:-38638317 MsG0580026505.01.T01:CDS
TCTAATAGAGTCAAAACAGC+AGG 0.570105 5:+38638740 None:intergenic
TGGACAGATTCCCAAGGCTA+AGG 0.573485 5:+38638281 None:intergenic
GGTGATTGAGTAATCGAGGT+AGG 0.575423 5:+38638691 None:intergenic
GTTTGCAATGGCAGGTGGTG+TGG 0.575901 5:-38638305 MsG0580026505.01.T01:CDS
AGACTGGAATGGAAGAGGCT+GGG 0.582182 5:-38636706 MsG0580026505.01.T01:CDS
TCAATAATGCTGCAATCGCA+TGG 0.583771 5:-38641196 MsG0580026505.01.T01:CDS
GGTAGGTATGCTGAGGAAGA+CGG 0.584747 5:+38638708 None:intergenic
CTGCAAGTTGAATTTCAGTA+GGG 0.584881 5:+38640901 None:intergenic
TCATGGCATCATCAGGGCAC+AGG 0.595088 5:-38636251 MsG0580026505.01.T01:CDS
TGAGTTGAAAATGTATTTGG+TGG 0.599251 5:-38638822 MsG0580026505.01.T01:CDS
AGAGTAAAGGAGGTGCCATA+GGG 0.600669 5:-38638799 MsG0580026505.01.T01:CDS
AATTGGTGATTGAGTAATCG+AGG 0.601775 5:+38638687 None:intergenic
GTGTGCTCATGGCATCATCA+GGG 0.603350 5:-38636257 MsG0580026505.01.T01:CDS
AGTGACAAAAGGCATGATTG+AGG 0.605241 5:-38640934 MsG0580026505.01.T01:CDS
TATGCTTGCTGTAATCACTT+CGG 0.607518 5:+38638222 None:intergenic
CTTGACCTCCCATAAACTGA+AGG 0.611748 5:+38636646 None:intergenic
CGATAATCAAGCTAAGCTCA+AGG 0.612303 5:-38637910 MsG0580026505.01.T01:CDS
TAGGGTACTCAGATTCAGAC+TGG 0.613519 5:-38641268 MsG0580026505.01.T01:CDS
GCCATTGCAAACATTACTGA+GGG 0.615245 5:+38638316 None:intergenic
GAAGGAACTTAACTGTGAAG+TGG 0.621061 5:-38641072 MsG0580026505.01.T01:CDS
TGCCATTGCAAACATTACTG+AGG 0.624016 5:+38638315 None:intergenic
CTAGCAAGGAAGGAAAGACT+GGG 0.630285 5:-38641295 MsG0580026505.01.T01:CDS
TATTTGGTGGAGAGTAAAGG+AGG 0.630771 5:-38638809 MsG0580026505.01.T01:CDS
TACTCAGATTCAGACTGGTG+TGG 0.636589 5:-38641263 MsG0580026505.01.T01:CDS
GTAAGCACACAATACATACA+AGG 0.647539 5:+38637860 None:intergenic
AATGGCCTTCAGTTTATGGG+AGG 0.649540 5:-38636651 MsG0580026505.01.T01:CDS
TGATTAGTTCAATTTCTGAG+AGG 0.660284 5:-38638856 MsG0580026505.01.T01:intron
GGCCATTCCCAAATCCACAA+AGG 0.662272 5:+38636667 None:intergenic
TTGACTCTATTAGAAAGGCG+AGG 0.663489 5:-38638731 MsG0580026505.01.T01:CDS
TAATCGAGGTAGGTATGCTG+AGG 0.665561 5:+38638701 None:intergenic
ATCCAATAGCACATGCCAGG+AGG 0.677930 5:-38640995 MsG0580026505.01.T01:CDS
GTAATGTTTGCAATGGCAGG+TGG 0.686758 5:-38638310 MsG0580026505.01.T01:CDS
TAGAGCAAATGCATACTGTG+TGG 0.706616 5:+38638261 None:intergenic
GAAGAACATATATCTTACTG+GGG 0.713784 5:-38636311 MsG0580026505.01.T01:CDS
GACAAAAGGCATGATTGAGG+TGG 0.717722 5:-38640931 MsG0580026505.01.T01:CDS
ACTGTGTGGACAGATTCCCA+AGG 0.729854 5:+38638275 None:intergenic
ACTTGGGTAAGTTCAAGACA+GGG 0.732443 5:+38636751 None:intergenic
TGGGTAAGTTCAAGACAGGG+TGG 0.743598 5:+38636754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTATATACTAATTAA+GGG + Chr5:38636937-38636956 None:intergenic 10.0%
!! ATCTTTAGTATTTATTAATT+TGG - Chr5:38638174-38638193 MsG0580026505.01.T01:intron 10.0%
!!! ATAAATTGATTTTGAAATAT+TGG - Chr5:38638886-38638905 MsG0580026505.01.T01:intron 10.0%
!!! TAAATTGATTTTGAAATATT+GGG - Chr5:38638887-38638906 MsG0580026505.01.T01:intron 10.0%
!! AATTGAAACTATAAATTACA+AGG + Chr5:38639968-38639987 None:intergenic 15.0%
!! ATAGCTTATATAAATTAAGT+TGG - Chr5:38638396-38638415 MsG0580026505.01.T01:intron 15.0%
!! CTATTATTTAAACATTGAAA+AGG + Chr5:38640163-38640182 None:intergenic 15.0%
!! GAAAACTTATATACTAATTA+AGG + Chr5:38636938-38636957 None:intergenic 15.0%
!! TATGTTATATATATTGAGAA+TGG + Chr5:38640896-38640915 None:intergenic 15.0%
!! TGTAATAAAATATTTATCCA+AGG - Chr5:38641300-38641319 MsG0580026505.01.T01:CDS 15.0%
!! TTAAATAATAGTTAAATCGA+AGG - Chr5:38640172-38640191 MsG0580026505.01.T01:intron 15.0%
!! TTAATCATTAAGAATACAAA+TGG + Chr5:38638134-38638153 None:intergenic 15.0%
!!! AAATTGATTTTGAAATATTG+GGG - Chr5:38638888-38638907 MsG0580026505.01.T01:intron 15.0%
!!! ATTGATTAAGCTTTTATATA+TGG - Chr5:38641130-38641149 MsG0580026505.01.T01:CDS 15.0%
!!! TAATTTTCTATTGATTATGT+CGG + Chr5:38639179-38639198 None:intergenic 15.0%
!!! TTTTCTTTCTCTTTTTTAAA+AGG + Chr5:38639612-38639631 None:intergenic 15.0%
!! AAACTAAAGTCCATTTATTA+CGG + Chr5:38637503-38637522 None:intergenic 20.0%
!! ACTAATTAATAACTCTTGTT+TGG + Chr5:38637579-38637598 None:intergenic 20.0%
!! ATTTATGGATTCAAATTCAA+AGG - Chr5:38638028-38638047 MsG0580026505.01.T01:CDS 20.0%
!! CACAAATGTATATAGTAATA+AGG - Chr5:38641181-38641200 MsG0580026505.01.T01:CDS 20.0%
!! CATCTATTTATCCAATTAAA+TGG - Chr5:38637667-38637686 MsG0580026505.01.T01:intron 20.0%
!! GTGTAAATAATTCTTTCTAA+AGG - Chr5:38639704-38639723 MsG0580026505.01.T01:intron 20.0%
!! TATTTAAACATTGAAAAGGT+AGG + Chr5:38640159-38640178 None:intergenic 20.0%
!! TCATCATTGACAAATTATTT+GGG - Chr5:38640625-38640644 MsG0580026505.01.T01:intron 20.0%
!! TCTTAAAGAATACAATCAAA+AGG - Chr5:38637050-38637069 MsG0580026505.01.T01:intron 20.0%
!! TTAAGAATACAAATGGAAAA+AGG + Chr5:38638127-38638146 None:intergenic 20.0%
!! TTACAACATTTCCATTTAAT+TGG + Chr5:38637681-38637700 None:intergenic 20.0%
!! TTTAATTGGATAAATAGATG+AGG + Chr5:38637667-38637686 None:intergenic 20.0%
!!! AACTTGATTTGTTGATATAA+TGG + Chr5:38637273-38637292 None:intergenic 20.0%
!!! CTTCTTTTGTTATATAAATC+TGG - Chr5:38640003-38640022 MsG0580026505.01.T01:intron 20.0%
!!! CTTTTAAAAACTGTATTAGT+GGG + Chr5:38637885-38637904 None:intergenic 20.0%
!!! GACTAATTAATTTTGTTTTC+AGG - Chr5:38638454-38638473 MsG0580026505.01.T01:intron 20.0%
!!! GTGGATTTTTAATTATGTTT+TGG - Chr5:38637183-38637202 MsG0580026505.01.T01:intron 20.0%
!!! GTTTGACTTTCTAAAATTTA+AGG - Chr5:38638083-38638102 MsG0580026505.01.T01:intron 20.0%
!!! TATGTTGTTTATGTTTATTG+TGG - Chr5:38641068-38641087 MsG0580026505.01.T01:CDS 20.0%
!!! TTCTCTTTTTTAAAAGGAAA+AGG + Chr5:38639606-38639625 None:intergenic 20.0%
!!! TTTGTTATATAAATCTGGTA+GGG - Chr5:38640008-38640027 MsG0580026505.01.T01:intron 20.0%
!!! TTTTGATTGTATTCTTTAAG+AGG + Chr5:38637051-38637070 None:intergenic 20.0%
!!! TTTTGTTATATAAATCTGGT+AGG - Chr5:38640007-38640026 MsG0580026505.01.T01:intron 20.0%
! AAACTTGTCTTAATTGTACA+CGG - Chr5:38637372-38637391 MsG0580026505.01.T01:intron 25.0%
! AACTAACAATCTTATCCAAA+TGG + Chr5:38636632-38636651 None:intergenic 25.0%
! ACCTAATAGCTTATCATTTA+AGG - Chr5:38638432-38638451 MsG0580026505.01.T01:intron 25.0%
! AGATACTGAAAAATAGAAGA+AGG + Chr5:38640539-38640558 None:intergenic 25.0%
! ATCAGTGTTAATATCATTTC+AGG + Chr5:38638849-38638868 None:intergenic 25.0%
! ATTATCATTGCGTTTACATT+TGG - Chr5:38638701-38638720 MsG0580026505.01.T01:CDS 25.0%
! CAATCACAAACTAAATCAAA+CGG - Chr5:38640868-38640887 MsG0580026505.01.T01:CDS 25.0%
! CCTTATGAAAATAGCTTATA+AGG - Chr5:38638337-38638356 MsG0580026505.01.T01:intron 25.0%
! CTTATATACTAATTAAGGGA+CGG + Chr5:38636933-38636952 None:intergenic 25.0%
! GAAATTATCTAACATTGCTA+AGG - Chr5:38637161-38637180 MsG0580026505.01.T01:intron 25.0%
! GTCATCATTGACAAATTATT+TGG - Chr5:38640624-38640643 MsG0580026505.01.T01:intron 25.0%
! GTCATCCAAAAAGTAATTTA+AGG + Chr5:38639332-38639351 None:intergenic 25.0%
! GTTAATGAGTTATGATTCAT+TGG + Chr5:38639839-38639858 None:intergenic 25.0%
! TAAAAGCAAAGCAATCAATT+GGG - Chr5:38637899-38637918 MsG0580026505.01.T01:CDS 25.0%
! TATTACACGAATGTTAACTT+TGG + Chr5:38641287-38641306 None:intergenic 25.0%
! TCCTTAAATGATAAGCTATT+AGG + Chr5:38638436-38638455 None:intergenic 25.0%
! TTAAAAGCAAAGCAATCAAT+TGG - Chr5:38637898-38637917 MsG0580026505.01.T01:CDS 25.0%
! TTTCATGATGAAATAGAACT+TGG + Chr5:38636398-38636417 None:intergenic 25.0%
!! ATAATTTGTCAATGATGACT+TGG + Chr5:38640623-38640642 None:intergenic 25.0%
!! TAATTTGTCAATGATGACTT+GGG + Chr5:38640622-38640641 None:intergenic 25.0%
!! TGACAGATTTTCTTACTTTA+GGG - Chr5:38636501-38636520 MsG0580026505.01.T01:intron 25.0%
!! TTGACAGATTTTCTTACTTT+AGG - Chr5:38636500-38636519 MsG0580026505.01.T01:intron 25.0%
!!! ATTAAGTTGGTTATCCAAAT+AGG - Chr5:38638409-38638428 MsG0580026505.01.T01:intron 25.0%
!!! CACAACCTTAAATTACTTTT+TGG - Chr5:38639324-38639343 MsG0580026505.01.T01:intron 25.0%
!!! CCTTATAAGCTATTTTCATA+AGG + Chr5:38638340-38638359 None:intergenic 25.0%
!!! GCTTTTAAAAACTGTATTAG+TGG + Chr5:38637886-38637905 None:intergenic 25.0%
!!! TCAGTATCTTGTTTTGTTAT+CGG - Chr5:38640550-38640569 MsG0580026505.01.T01:intron 25.0%
!!! TTGTTTTGTTTGGAGAATAT+AGG - Chr5:38641010-38641029 MsG0580026505.01.T01:CDS 25.0%
!!! TTTTTGTTGCTTCTGATTTA+TGG - Chr5:38638013-38638032 MsG0580026505.01.T01:CDS 25.0%
AAACAGTGATTTACCATCAA+CGG - Chr5:38636961-38636980 MsG0580026505.01.T01:intron 30.0%
AACTTAAAGGATTGCTTCAT+AGG - Chr5:38640114-38640133 MsG0580026505.01.T01:intron 30.0%
AATACAGCAGAATTCAATAC+TGG + Chr5:38639281-38639300 None:intergenic 30.0%
ACTTATAAAAGTGATTGAGC+TGG + Chr5:38639765-38639784 None:intergenic 30.0%
AGAAATTGAACTAATCAAGG+AGG + Chr5:38638495-38638514 None:intergenic 30.0%
AGGAAGAACATATATCTTAC+TGG - Chr5:38641041-38641060 MsG0580026505.01.T01:CDS 30.0%
AGTGGCACAGTTTAAAAAAA+GGG - Chr5:38640488-38640507 MsG0580026505.01.T01:intron 30.0%
ATAAGCTATTAGGTCCTATT+TGG + Chr5:38638426-38638445 None:intergenic 30.0%
ATCAATTAGAATCTTGACAG+CGG + Chr5:38637638-38637657 None:intergenic 30.0%
ATCATGAAACAAGTGACAAA+AGG - Chr5:38636409-38636428 MsG0580026505.01.T01:intron 30.0%
ATTATCTAACATTGCTAAGG+TGG - Chr5:38637164-38637183 MsG0580026505.01.T01:intron 30.0%
ATTCTCTATGAGAAAAACTG+CGG + Chr5:38640243-38640262 None:intergenic 30.0%
CAAATGAGAACTCATATAAC+AGG + Chr5:38637822-38637841 None:intergenic 30.0%
CACTGTTTAGAAACAGAAAT+AGG - Chr5:38639646-38639665 MsG0580026505.01.T01:intron 30.0%
CAGCATTATTGAACTTGAAT+AGG + Chr5:38636150-38636169 None:intergenic 30.0%
CTCAGAAATTGAACTAATCA+AGG + Chr5:38638498-38638517 None:intergenic 30.0%
CTCATTGAATGTTAGGATTA+TGG - Chr5:38636535-38636554 MsG0580026505.01.T01:intron 30.0%
GAAATATTGGGGAAATTTGA+AGG - Chr5:38638899-38638918 MsG0580026505.01.T01:intron 30.0%
GAAGAACATATATCTTACTG+GGG - Chr5:38641043-38641062 MsG0580026505.01.T01:CDS 30.0%
GATGTGTTATCCGTAATAAA+TGG - Chr5:38637490-38637509 MsG0580026505.01.T01:intron 30.0%
GGAAGAACATATATCTTACT+GGG - Chr5:38641042-38641061 MsG0580026505.01.T01:CDS 30.0%
GTTAGGATTATGGATTTAGA+GGG - Chr5:38636545-38636564 MsG0580026505.01.T01:intron 30.0%
TACTGAAAAATAGAAGAAGG+CGG + Chr5:38640536-38640555 None:intergenic 30.0%
TACTGATATAAGCACTTTCA+AGG - Chr5:38638225-38638244 MsG0580026505.01.T01:CDS 30.0%
TCCTTATAAAGGCCAAATTA+TGG + Chr5:38637091-38637110 None:intergenic 30.0%
TCGTTGAAAATTGAATGACA+TGG - Chr5:38637408-38637427 MsG0580026505.01.T01:intron 30.0%
TGAATTTGCGATTACAAAGT+TGG + Chr5:38640848-38640867 None:intergenic 30.0%
TGCAAGTTAAGTTAGACAAA+AGG + Chr5:38637209-38637228 None:intergenic 30.0%
TGTGAGTTCAAACTAATCAT+TGG + Chr5:38641165-38641184 None:intergenic 30.0%
TGTTAGGATTATGGATTTAG+AGG - Chr5:38636544-38636563 MsG0580026505.01.T01:intron 30.0%
TTACTCAATCACCAATTTCT+TGG - Chr5:38638673-38638692 MsG0580026505.01.T01:CDS 30.0%
TTAGAGAGAGAATAGAGTAT+GGG + Chr5:38636739-38636758 None:intergenic 30.0%
TTAGGATTATGGATTTAGAG+GGG - Chr5:38636546-38636565 MsG0580026505.01.T01:intron 30.0%
TTTATGTTTATTGTGGCTGT+TGG - Chr5:38641075-38641094 MsG0580026505.01.T01:CDS 30.0%
! AACATGGTTATTTCATCTGT+AGG - Chr5:38636996-38637015 MsG0580026505.01.T01:intron 30.0%
! ATAATTTGGCCTTTATAAGG+AGG - Chr5:38637090-38637109 MsG0580026505.01.T01:intron 30.0%
! ATTGTTACTTGCAGGATAAT+TGG - Chr5:38639015-38639034 MsG0580026505.01.T01:intron 30.0%
! CTTCATAAATTGTTACTTGC+AGG - Chr5:38639007-38639026 MsG0580026505.01.T01:intron 30.0%
! GATTACAAAGTTGGCTTATA+TGG + Chr5:38640839-38640858 None:intergenic 30.0%
! GCAAGTTGAGTTAAGAAATT+TGG + Chr5:38638755-38638774 None:intergenic 30.0%
! TAAAAGAGTTCCCTCTATTT+TGG + Chr5:38639795-38639814 None:intergenic 30.0%
! TCTTTGAAAGAAGGAAACAT+AGG - Chr5:38640070-38640089 MsG0580026505.01.T01:intron 30.0%
! TGAGTTGAAAATGTATTTGG+TGG - Chr5:38638532-38638551 MsG0580026505.01.T01:intron 30.0%
! TGATTAGTTCAATTTCTGAG+AGG - Chr5:38638498-38638517 MsG0580026505.01.T01:intron 30.0%
! TGCTGAGTTGAAAATGTATT+TGG - Chr5:38638529-38638548 MsG0580026505.01.T01:intron 30.0%
! TTTGAATGTGTTGATGAAAC+AGG - Chr5:38640957-38640976 MsG0580026505.01.T01:CDS 30.0%
!! CAAGTTGATAATCATACGAA+GGG + Chr5:38639549-38639568 None:intergenic 30.0%
!! GCTATTTTCATAAGGTATCT+TGG + Chr5:38638332-38638351 None:intergenic 30.0%
!! GTTTGTTTAGCTTTACCATT+TGG - Chr5:38636614-38636633 MsG0580026505.01.T01:CDS 30.0%
!! TTTTGGGGAATTGTTTTGTT+TGG - Chr5:38641000-38641019 MsG0580026505.01.T01:CDS 30.0%
!!! ATCACAGTTTTAGGGTTTAA+TGG + Chr5:38636794-38636813 None:intergenic 30.0%
!!! CTGTTTTGACTCTATTAGAA+AGG - Chr5:38638618-38638637 MsG0580026505.01.T01:CDS 30.0%
!!! TCAAAAACTTTGTTTTGCCA+GGG - Chr5:38640045-38640064 MsG0580026505.01.T01:intron 30.0%
AAAGTGAGACAAGTGCATTA+TGG + Chr5:38637343-38637362 None:intergenic 35.0%
AAATCGAAGGATCTTGAAAG+TGG - Chr5:38640185-38640204 MsG0580026505.01.T01:intron 35.0%
AACAGTGATTTACCATCAAC+GGG - Chr5:38636962-38636981 MsG0580026505.01.T01:intron 35.0%
AACTTTGTTCAACTTGTCAC+AGG - Chr5:38639301-38639320 MsG0580026505.01.T01:intron 35.0%
AAGCACTTTCAAGGTTGTTT+GGG - Chr5:38638234-38638253 MsG0580026505.01.T01:CDS 35.0%
AAGTAGTACCTCCAAAATAG+AGG - Chr5:38639781-38639800 MsG0580026505.01.T01:intron 35.0%
AATTATTTGGGAGACTGGAA+TGG - Chr5:38640637-38640656 MsG0580026505.01.T01:intron 35.0%
ACATTTGGTCAGATAGGAAA+TGG - Chr5:38638716-38638735 MsG0580026505.01.T01:CDS 35.0%
ACGGGTATAATCAGTAAACA+TGG - Chr5:38636980-38636999 MsG0580026505.01.T01:intron 35.0%
ACTATGGTTAACCCAATCAA+AGG + Chr5:38640406-38640425 None:intergenic 35.0%
ACTGAAATTCAACTTGCAGA+TGG - Chr5:38636457-38636476 MsG0580026505.01.T01:intron 35.0%
AGAATCTTGTTAAACTCACC+TGG + Chr5:38640762-38640781 None:intergenic 35.0%
AGTAGTACCTCCAAAATAGA+GGG - Chr5:38639782-38639801 MsG0580026505.01.T01:intron 35.0%
AGTATGCATTTGCTCTAGTT+GGG - Chr5:38639099-38639118 MsG0580026505.01.T01:intron 35.0%
CAATACTGGATCATGTTGAA+GGG + Chr5:38639267-38639286 None:intergenic 35.0%
CAGTGGCACAGTTTAAAAAA+AGG - Chr5:38640487-38640506 MsG0580026505.01.T01:intron 35.0%
CATTTGGTCAGATAGGAAAT+GGG - Chr5:38638717-38638736 MsG0580026505.01.T01:CDS 35.0%
CTTCACTTGTTTCATCGTAA+TGG - Chr5:38638799-38638818 MsG0580026505.01.T01:CDS 35.0%
GATAATAGCAGCCAAGAAAT+TGG + Chr5:38638687-38638706 None:intergenic 35.0%
GATTCATTGGAGAAGAGAAA+AGG + Chr5:38639826-38639845 None:intergenic 35.0%
GATTGTTACTGCTGATAAAG+AGG - Chr5:38639863-38639882 MsG0580026505.01.T01:intron 35.0%
GGAGAATATAGGAAATCATC+AGG - Chr5:38641021-38641040 MsG0580026505.01.T01:CDS 35.0%
GGTTCAAATCCTTCAAAACA+CGG - Chr5:38638820-38638839 MsG0580026505.01.T01:CDS 35.0%
GTAAGCACACAATACATACA+AGG + Chr5:38639497-38639516 None:intergenic 35.0%
GTTAGAGAGAGAATAGAGTA+TGG + Chr5:38636740-38636759 None:intergenic 35.0%
GTTAGGTCTCATTGAATGTT+AGG - Chr5:38636528-38636547 MsG0580026505.01.T01:intron 35.0%
TAAGCACTTTCAAGGTTGTT+TGG - Chr5:38638233-38638252 MsG0580026505.01.T01:CDS 35.0%
TCAATACTGGATCATGTTGA+AGG + Chr5:38639268-38639287 None:intergenic 35.0%
TCATACATGTAGTGTGCTAT+TGG - Chr5:38640302-38640321 MsG0580026505.01.T01:intron 35.0%
TCCAACAAGGTTCAACTTAA+AGG - Chr5:38640101-38640120 MsG0580026505.01.T01:intron 35.0%
TCTAATAGAGTCAAAACAGC+AGG + Chr5:38638617-38638636 None:intergenic 35.0%
TGACAAATTATTTGGGAGAC+TGG - Chr5:38640632-38640651 MsG0580026505.01.T01:intron 35.0%
TGAGAACAGAAGAGCTATTA+AGG - Chr5:38640262-38640281 MsG0580026505.01.T01:intron 35.0%
TGAGAACTCATATAACAGGT+TGG + Chr5:38637818-38637837 None:intergenic 35.0%
TTGCAGCTTGTAAAGCAATT+TGG - Chr5:38636245-38636264 MsG0580026505.01.T01:CDS 35.0%
TTGGGAAAAGACCTTTGATT+GGG - Chr5:38640392-38640411 MsG0580026505.01.T01:intron 35.0%
TTTGGGAAAAGACCTTTGAT+TGG - Chr5:38640391-38640410 MsG0580026505.01.T01:intron 35.0%
! AAGAAGATGAAGTTGGTTAG+AGG + Chr5:38636765-38636784 None:intergenic 35.0%
! AAGCAAGCAATCACAGTTTT+AGG + Chr5:38636803-38636822 None:intergenic 35.0%
! AATTGGTGATTGAGTAATCG+AGG + Chr5:38638670-38638689 None:intergenic 35.0%
! AGAAATAGGAATTGCCACTT+TGG - Chr5:38639660-38639679 MsG0580026505.01.T01:intron 35.0%
! AGCAAGCAATCACAGTTTTA+GGG + Chr5:38636802-38636821 None:intergenic 35.0%
! ATGTATTTGGTGGAGAGTAA+AGG - Chr5:38638542-38638561 MsG0580026505.01.T01:intron 35.0%
! CTCTTGTTTGGTAGTTAGAT+TGG + Chr5:38637567-38637586 None:intergenic 35.0%
! CTGCAAGTTGAATTTCAGTA+GGG + Chr5:38636456-38636475 None:intergenic 35.0%
! CTTGAGCTTAGCTTGATTAT+CGG + Chr5:38639446-38639465 None:intergenic 35.0%
! GCCATAATTTGGCCTTTATA+AGG - Chr5:38637087-38637106 MsG0580026505.01.T01:intron 35.0%
! TCTGCAAGTTGAATTTCAGT+AGG + Chr5:38636457-38636476 None:intergenic 35.0%
! TCTTACTTTAGGGACAAGTT+AGG - Chr5:38636511-38636530 MsG0580026505.01.T01:intron 35.0%
! TTAACCATAGTTTTCTTCGC+TGG - Chr5:38640415-38640434 MsG0580026505.01.T01:intron 35.0%
! TTACTGATTATACCCGTTGA+TGG + Chr5:38636977-38636996 None:intergenic 35.0%
! TTGTCAATTTTCAGCTTCAG+TGG + Chr5:38636313-38636332 None:intergenic 35.0%
! TTTCTTAACTCAACTTGCTC+AGG - Chr5:38638757-38638776 MsG0580026505.01.T01:CDS 35.0%
! TTTGTTGCTAAGTTGAATGC+TGG + Chr5:38640463-38640482 None:intergenic 35.0%
!! GAAATAGGAATTGCCACTTT+GGG - Chr5:38639661-38639680 MsG0580026505.01.T01:intron 35.0%
!! GCAAGTTGATAATCATACGA+AGG + Chr5:38639550-38639569 None:intergenic 35.0%
!! TATGCTTGCTGTAATCACTT+CGG + Chr5:38639135-38639154 None:intergenic 35.0%
!! TCCTTTAAGTTGAACCTTGT+TGG + Chr5:38640105-38640124 None:intergenic 35.0%
!! TTTAAGTTGAACCTTGTTGG+AGG + Chr5:38640102-38640121 None:intergenic 35.0%
!!! ACAGTTTTAGGGTTTAATGG+AGG + Chr5:38636791-38636810 None:intergenic 35.0%
!!! AGTTGGTTGTTTTTTGGTTG+CGG - Chr5:38639384-38639403 MsG0580026505.01.T01:intron 35.0%
!!! CTTTTTTTAAACTGTGCCAC+TGG + Chr5:38640489-38640508 None:intergenic 35.0%
!!! TGTTGGCTCTTTTCTTCTTA+GGG - Chr5:38638585-38638604 MsG0580026505.01.T01:intron 35.0%
AACTCCTGGGAAAAGAATCT+CGG + Chr5:38639368-38639387 None:intergenic 40.0%
ACCAAAAAACAACCAACTCC+TGG + Chr5:38639382-38639401 None:intergenic 40.0%
ACCTAATAGAGCTGAGAAAG+TGG + Chr5:38637744-38637763 None:intergenic 40.0%
ACTTAGCAACAAATGACCAG+TGG - Chr5:38640470-38640489 MsG0580026505.01.T01:intron 40.0%
ACTTCTATGTCAACGAGAGT+TGG - Chr5:38637609-38637628 MsG0580026505.01.T01:intron 40.0%
ACTTGGGTAAGTTCAAGACA+GGG + Chr5:38640606-38640625 None:intergenic 40.0%
AGCACTTTCAAGGTTGTTTG+GGG - Chr5:38638235-38638254 MsG0580026505.01.T01:CDS 40.0%
AGCTATGATAGTTCCCAAAG+TGG + Chr5:38639677-38639696 None:intergenic 40.0%
ATAGGTAAGAACCTCCAACA+AGG - Chr5:38640088-38640107 MsG0580026505.01.T01:intron 40.0%
ATTTGCTCTAGTTGGGCTTT+CGG - Chr5:38639106-38639125 MsG0580026505.01.T01:intron 40.0%
CACATTATTAGCGCAACGAT+TGG + Chr5:38636835-38636854 None:intergenic 40.0%
CAGTATGCATTTGCTCTAGT+TGG - Chr5:38639098-38639117 MsG0580026505.01.T01:intron 40.0%
CCAAAAAACAACCAACTCCT+GGG + Chr5:38639381-38639400 None:intergenic 40.0%
CGATAATCAAGCTAAGCTCA+AGG - Chr5:38639444-38639463 MsG0580026505.01.T01:intron 40.0%
CGGTGAGATACCTATAACAA+CGG + Chr5:38639159-38639178 None:intergenic 40.0%
CTAATTAAGGGACGGAGATT+TGG + Chr5:38636925-38636944 None:intergenic 40.0%
CTGGTTTCCTTTGTGGATTT+GGG - Chr5:38640680-38640699 MsG0580026505.01.T01:intron 40.0%
GAAGGAACTTAACTGTGAAG+TGG - Chr5:38636282-38636301 MsG0580026505.01.T01:CDS 40.0%
GACGAGTTCTCGTTAGATAT+CGG + Chr5:38640812-38640831 None:intergenic 40.0%
GAGGAAGAAGAAGATGAAGT+TGG + Chr5:38636772-38636791 None:intergenic 40.0%
GAGTGCGGAATTTGTGTTTA+TGG - Chr5:38639926-38639945 MsG0580026505.01.T01:intron 40.0%
GATTCCAGCGAAGAAAACTA+TGG + Chr5:38640422-38640441 None:intergenic 40.0%
GCAAGCATAACCGTTGTTAT+AGG - Chr5:38639146-38639165 MsG0580026505.01.T01:intron 40.0%
GCCATTGCAAACATTACTGA+GGG + Chr5:38639041-38639060 None:intergenic 40.0%
GCGTTTACATTTGGTCAGAT+AGG - Chr5:38638710-38638729 MsG0580026505.01.T01:CDS 40.0%
GTTTCCACCGTCAGATATTT+GGG + Chr5:38637532-38637551 None:intergenic 40.0%
TAGAGCAAATGCATACTGTG+TGG + Chr5:38639096-38639115 None:intergenic 40.0%
TCAATAATGCTGCAATCGCA+TGG - Chr5:38636158-38636177 MsG0580026505.01.T01:three_prime_UTR 40.0%
TCAGTAATGTTTGCAATGGC+AGG - Chr5:38639041-38639060 MsG0580026505.01.T01:intron 40.0%
TCTGCGGAAAAATTGAAAGC+AGG - Chr5:38640215-38640234 MsG0580026505.01.T01:intron 40.0%
TGAAAGTGGAAGCAATTCTG+CGG - Chr5:38640199-38640218 MsG0580026505.01.T01:intron 40.0%
TGAATTTCAGTTGCTGAGTG+CGG - Chr5:38639911-38639930 MsG0580026505.01.T01:intron 40.0%
TGACTGTGTCCTCCTTATAA+AGG + Chr5:38637102-38637121 None:intergenic 40.0%
TGATAATCATACGAAGGGAC+CGG + Chr5:38639544-38639563 None:intergenic 40.0%
TGCCATTGCAAACATTACTG+AGG + Chr5:38639042-38639061 None:intergenic 40.0%
TGGAGAAGAGAAAAGGAGTT+TGG + Chr5:38639819-38639838 None:intergenic 40.0%
TGTTTCCACCGTCAGATATT+TGG + Chr5:38637533-38637552 None:intergenic 40.0%
TTACGTGCCCAAATATCTGA+CGG - Chr5:38637522-38637541 MsG0580026505.01.T01:intron 40.0%
TTCCTTTGTGGATTTGGGAA+TGG - Chr5:38640685-38640704 MsG0580026505.01.T01:intron 40.0%
TTGACTCTATTAGAAAGGCG+AGG - Chr5:38638623-38638642 MsG0580026505.01.T01:CDS 40.0%
TTGGCTAGACAATGTGATGA+AGG - Chr5:38636264-38636283 MsG0580026505.01.T01:CDS 40.0%
! AAGGTATCTTGGAGAGCTTA+TGG + Chr5:38638321-38638340 None:intergenic 40.0%
! AGTGACAAAAGGCATGATTG+AGG - Chr5:38636420-38636439 MsG0580026505.01.T01:intron 40.0%
! CTCTTTTCTTCTTAGGGACA+TGG - Chr5:38638591-38638610 MsG0580026505.01.T01:intron 40.0%
! TAACTCAACTTGCTCAGGTT+CGG - Chr5:38638762-38638781 MsG0580026505.01.T01:CDS 40.0%
! TATTTGGTGGAGAGTAAAGG+AGG - Chr5:38638545-38638564 MsG0580026505.01.T01:intron 40.0%
! TTCCACTTGTGAGCACTTTT+TGG - Chr5:38640983-38641002 MsG0580026505.01.T01:CDS 40.0%
!! AAGAGTTCCCTCTATTTTGG+AGG + Chr5:38639792-38639811 None:intergenic 40.0%
!! TCCACTTGTGAGCACTTTTT+GGG - Chr5:38640984-38641003 MsG0580026505.01.T01:CDS 40.0%
!!! CTGTTGGCTCTTTTCTTCTT+AGG - Chr5:38638584-38638603 MsG0580026505.01.T01:intron 40.0%
!!! TTTTTGGTTGCGGTTTGTCT+AGG - Chr5:38639394-38639413 MsG0580026505.01.T01:intron 40.0%
AAGGAAAGACTGGGCTGATA+GGG - Chr5:38636068-38636087 MsG0580026505.01.T01:three_prime_UTR 45.0%
AATGGCCTTCAGTTTATGGG+AGG - Chr5:38640703-38640722 MsG0580026505.01.T01:intron 45.0%
AGAATCCAATAGCACATGCC+AGG - Chr5:38636356-38636375 MsG0580026505.01.T01:CDS 45.0%
AGGCGGTGTAAACATTCAGA+TGG + Chr5:38640519-38640538 None:intergenic 45.0%
AGTTCAAGACAGGGTGGTAA+AGG + Chr5:38640597-38640616 None:intergenic 45.0%
CTAGCAAGGAAGGAAAGACT+GGG - Chr5:38636059-38636078 MsG0580026505.01.T01:three_prime_UTR 45.0%
CTTGACCTCCCATAAACTGA+AGG + Chr5:38640711-38640730 None:intergenic 45.0%
GACTTGGGTAAGTTCAAGAC+AGG + Chr5:38640607-38640626 None:intergenic 45.0%
GCCCTCAGTAATGTTTGCAA+TGG - Chr5:38639037-38639056 MsG0580026505.01.T01:intron 45.0%
GCGGTGTAAACATTCAGATG+GGG + Chr5:38640517-38640536 None:intergenic 45.0%
GGCGGTGTAAACATTCAGAT+GGG + Chr5:38640518-38640537 None:intergenic 45.0%
GGGAATGGCCTTCAGTTTAT+GGG - Chr5:38640700-38640719 MsG0580026505.01.T01:intron 45.0%
GGTGATTGAGTAATCGAGGT+AGG + Chr5:38638666-38638685 None:intergenic 45.0%
GGTTTCAATGTGTATCCTCC+TGG + Chr5:38636377-38636396 None:intergenic 45.0%
GTAATGTTTGCAATGGCAGG+TGG - Chr5:38639044-38639063 MsG0580026505.01.T01:intron 45.0%
GTCTATTTAACTCCCCTTGC+CGG - Chr5:38639522-38639541 MsG0580026505.01.T01:intron 45.0%
TAATCGAGGTAGGTATGCTG+AGG + Chr5:38638656-38638675 None:intergenic 45.0%
TACTCAGATTCAGACTGGTG+TGG - Chr5:38636091-38636110 MsG0580026505.01.T01:three_prime_UTR 45.0%
TCCTTCTTTCAAAGAGTCCC+TGG + Chr5:38640065-38640084 None:intergenic 45.0%
TGGCAAGTCGATAAAGAGAG+AGG + Chr5:38637724-38637743 None:intergenic 45.0%
TGGGAATGGCCTTCAGTTTA+TGG - Chr5:38640699-38640718 MsG0580026505.01.T01:intron 45.0%
TTTCCAACTGCTAGCAAGGA+AGG - Chr5:38636049-38636068 MsG0580026505.01.T01:three_prime_UTR 45.0%
TTTCCTTCCTTGCTAGCAGT+TGG + Chr5:38636055-38636074 None:intergenic 45.0%
TTTGGTTGAGTGCATGGCAT+TGG + Chr5:38636907-38636926 None:intergenic 45.0%
! AAAGCCGAGATTCTTTTCCC+AGG - Chr5:38639361-38639380 MsG0580026505.01.T01:intron 45.0%
! AAAGTTCCGCTGCAGGTTTT+TGG - Chr5:38640373-38640392 MsG0580026505.01.T01:intron 45.0%
! AAGTTCCGCTGCAGGTTTTT+GGG - Chr5:38640374-38640393 MsG0580026505.01.T01:intron 45.0%
! CTTTTCCCAAAAACCTGCAG+CGG + Chr5:38640382-38640401 None:intergenic 45.0%
! GACAAAAGGCATGATTGAGG+TGG - Chr5:38636423-38636442 MsG0580026505.01.T01:intron 45.0%
! GAGATTCTTTTCCCAGGAGT+TGG - Chr5:38639367-38639386 MsG0580026505.01.T01:intron 45.0%
! GCCACTTTCTCAGCTCTATT+AGG - Chr5:38637740-38637759 MsG0580026505.01.T01:intron 45.0%
! GCTGGTTTCCTTTGTGGATT+TGG - Chr5:38640679-38640698 MsG0580026505.01.T01:intron 45.0%
! GGCATGTGCTATTGGATTCT+TGG + Chr5:38636356-38636375 None:intergenic 45.0%
! TACTCTAAAAGTTCCGCTGC+AGG - Chr5:38640366-38640385 MsG0580026505.01.T01:intron 45.0%
! TAGGGTACTCAGATTCAGAC+TGG - Chr5:38636086-38636105 MsG0580026505.01.T01:three_prime_UTR 45.0%
!! AGAGTAAAGGAGGTGCCATA+GGG - Chr5:38638555-38638574 MsG0580026505.01.T01:intron 45.0%
!! CCACTTGTGAGCACTTTTTG+GGG - Chr5:38640985-38641004 MsG0580026505.01.T01:CDS 45.0%
!! TTCAGGTGTCCGTGTTTTGA+AGG + Chr5:38638832-38638851 None:intergenic 45.0%
!!! CCCAGGAGTTGGTTGTTTTT+TGG - Chr5:38639378-38639397 MsG0580026505.01.T01:intron 45.0%
AAGGCCAAATTATGGCCAGC+TGG + Chr5:38637083-38637102 None:intergenic 50.0%
AATTATGGCCAGCTGGATCG+CGG + Chr5:38637076-38637095 None:intergenic 50.0%
ACAAAGGAAACCAGCCAGCA+AGG + Chr5:38640674-38640693 None:intergenic 50.0%
ACTGTGTGGACAGATTCCCA+AGG + Chr5:38639082-38639101 None:intergenic 50.0%
AGACTGGAATGGAAGAGGCT+GGG - Chr5:38640648-38640667 MsG0580026505.01.T01:intron 50.0%
ATCCAATAGCACATGCCAGG+AGG - Chr5:38636359-38636378 MsG0580026505.01.T01:CDS 50.0%
ATCCTCCTGGCATGTGCTAT+TGG + Chr5:38636364-38636383 None:intergenic 50.0%
CGATCCAGCTGGCCATAATT+TGG - Chr5:38637076-38637095 MsG0580026505.01.T01:intron 50.0%
GAAGGAAAGACTGGGCTGAT+AGG - Chr5:38636067-38636086 MsG0580026505.01.T01:three_prime_UTR 50.0%
GCTAGCAAGGAAGGAAAGAC+TGG - Chr5:38636058-38636077 MsG0580026505.01.T01:three_prime_UTR 50.0%
GGCCATTCCCAAATCCACAA+AGG + Chr5:38640690-38640709 None:intergenic 50.0%
GGTAGGTATGCTGAGGAAGA+CGG + Chr5:38638649-38638668 None:intergenic 50.0%
GTGTGCTCATGGCATCATCA+GGG - Chr5:38641097-38641116 MsG0580026505.01.T01:CDS 50.0%
TGGACAGATTCCCAAGGCTA+AGG + Chr5:38639076-38639095 None:intergenic 50.0%
TGGGTAAGTTCAAGACAGGG+TGG + Chr5:38640603-38640622 None:intergenic 50.0%
TTGGGAGACTGGAATGGAAG+AGG - Chr5:38640643-38640662 MsG0580026505.01.T01:intron 50.0%
TTTATGGGAGGTCAAGCTGC+TGG - Chr5:38640715-38640734 MsG0580026505.01.T01:intron 50.0%
! CGGAGATTTGGTTGAGTGCA+TGG + Chr5:38636913-38636932 None:intergenic 50.0%
! GCCAGGGACTCTTTGAAAGA+AGG - Chr5:38640061-38640080 MsG0580026505.01.T01:intron 50.0%
! GTGCATGGCATTGGATCTAG+AGG + Chr5:38636898-38636917 None:intergenic 50.0%
!! CCCCAAAAAGTGCTCACAAG+TGG + Chr5:38640988-38641007 None:intergenic 50.0%
!! GAGAGTAAAGGAGGTGCCAT+AGG - Chr5:38638554-38638573 MsG0580026505.01.T01:intron 50.0%
!! TTGCTGGCTGGTTTCCTTTG+TGG - Chr5:38640673-38640692 MsG0580026505.01.T01:intron 50.0%
AGCCAACAGCATGCACCCTA+TGG + Chr5:38638573-38638592 None:intergenic 55.0%
ATCATACGAAGGGACCGGCA+AGG + Chr5:38639539-38639558 None:intergenic 55.0%
CGTGCCCAAATATCTGACGG+TGG - Chr5:38637525-38637544 MsG0580026505.01.T01:intron 55.0%
GAGACTGGAATGGAAGAGGC+TGG - Chr5:38640647-38640666 MsG0580026505.01.T01:intron 55.0%
GGTGTGCTCATGGCATCATC+AGG - Chr5:38641096-38641115 MsG0580026505.01.T01:CDS 55.0%
GTTTGCAATGGCAGGTGGTG+TGG - Chr5:38639049-38639068 MsG0580026505.01.T01:intron 55.0%
TCATACGAAGGGACCGGCAA+GGG + Chr5:38639538-38639557 None:intergenic 55.0%
TCATGGCATCATCAGGGCAC+AGG - Chr5:38641103-38641122 MsG0580026505.01.T01:CDS 55.0%
TGCCATAGGGTGCATGCTGT+TGG - Chr5:38638568-38638587 MsG0580026505.01.T01:intron 55.0%
TGTGGCTGTTGGTGTGCTCA+TGG - Chr5:38641086-38641105 MsG0580026505.01.T01:CDS 55.0%
! GTGGTGTGGTCCTTAGCCTT+GGG - Chr5:38639063-38639082 MsG0580026505.01.T01:intron 55.0%
CATACGAAGGGACCGGCAAG+GGG + Chr5:38639537-38639556 None:intergenic 60.0%
GGTGGTGTGGTCCTTAGCCT+TGG - Chr5:38639062-38639081 MsG0580026505.01.T01:intron 60.0%
TCAAAAGGCCGCGATCCAGC+TGG - Chr5:38637065-38637084 MsG0580026505.01.T01:intron 60.0%
TGCAGCAGCTGATGCTGTCC+AGG - Chr5:38640741-38640760 MsG0580026505.01.T01:intron 60.0%
TGGAAGAGGCTGGGCCTTGC+TGG - Chr5:38640657-38640676 MsG0580026505.01.T01:intron 65.0%
AGAGGCTGGGCCTTGCTGGC+TGG - Chr5:38640661-38640680 MsG0580026505.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 38636046 38641330 38636046 ID=MsG0580026505.01;Name=MsG0580026505.01
Chr5 mRNA 38636046 38641330 38636046 ID=MsG0580026505.01.T01;Parent=MsG0580026505.01;Name=MsG0580026505.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.2|0.16|1|1|1|6|196|484
Chr5 exon 38636046 38636397 38636046 ID=MsG0580026505.01.T01:exon:9264;Parent=MsG0580026505.01.T01
Chr5 exon 38636614 38636822 38636614 ID=MsG0580026505.01.T01:exon:9263;Parent=MsG0580026505.01.T01
Chr5 exon 38637859 38638053 38637859 ID=MsG0580026505.01.T01:exon:9262;Parent=MsG0580026505.01.T01
Chr5 exon 38638209 38638347 38638209 ID=MsG0580026505.01.T01:exon:9261;Parent=MsG0580026505.01.T01
Chr5 exon 38638598 38638871 38638598 ID=MsG0580026505.01.T01:exon:9260;Parent=MsG0580026505.01.T01
Chr5 exon 38640849 38641330 38640849 ID=MsG0580026505.01.T01:exon:9259;Parent=MsG0580026505.01.T01
Chr5 CDS 38640849 38641330 38640849 ID=MsG0580026505.01.T01:cds;Parent=MsG0580026505.01.T01
Chr5 CDS 38638598 38638871 38638598 ID=MsG0580026505.01.T01:cds;Parent=MsG0580026505.01.T01
Chr5 CDS 38638209 38638347 38638209 ID=MsG0580026505.01.T01:cds;Parent=MsG0580026505.01.T01
Chr5 CDS 38637859 38638053 38637859 ID=MsG0580026505.01.T01:cds;Parent=MsG0580026505.01.T01
Chr5 CDS 38636614 38636822 38636614 ID=MsG0580026505.01.T01:cds;Parent=MsG0580026505.01.T01
Chr5 CDS 38636242 38636397 38636242 ID=MsG0580026505.01.T01:cds;Parent=MsG0580026505.01.T01
Chr5 three_prime_UTR 38636046 38636241 38636046 ID=MsG0580026505.01.T01:three_prime_utr;Parent=MsG0580026505.01.T01
Gene Sequence

>MsG0580026505.01.T01

ATGTTTCCAACTGCTAGCAAGGAAGGAAAGACTGGGCTGATAGGGTACTCAGATTCAGACTGGTGTGGAGATAAAAGTGATAGAAGAAACACTTCTAGTTACCTATTCAAGTTCAATAATGCTGCAATCGCATGGTGCACAAAGAAGCAACATGTAACTGCTCTATCATCTTGTGAAGTTGAGTATATAGCATGCACTTTTGCAGCTTGTAAAGCAATTTGGCTAGACAATGTGATGAAGGAACTTAACTGTGAAGTGGAGAAGCCACTGAAGCTGAAAATTGACAATAAATCAGCTATAAATCTAGCCAAGAATCCAATAGCACATGCCAGGAGGATACACATTGAAACCAAGTTCTATTTCATCATGAAACAAGTGACAAAAGGCATGATTGAGGTGGTGTATTGCCCTACTGAAATTCAACTTGCAGATGGATTCACAAAAGCTTTGAAAATTGACAGATTTTCTTACTTTAGGGACAATTCAATTTCTGAGAGGATTTTAAGTGCTGAGTTGAAAATGTATTTGGTGGAGAGTAAAGGAGGTGCCATAGGGTGCATGCTGTTGGCTCTTTTCTTCTTAGGGACATGGCCTGCTGTTTTGACTCTATTAGAAAGGCGAGGCCGTCTTCCTCAGCATACCTACCTCGATTACTCAATCACCAATTTCTTGGCTGCTATTATCATTGCGTTTACATTTGGTCAGATAGGAAATGGGACAGTCGATGAGCCAAATTTCTTAACTCAACTTGCTCAGGATAATTGGCCCTCAGTAATGTTTGCAATGGCAGGTGGTGTGGTCCTTAGCCTTGGGAATCTGTCCACACAGTATGCATTTGCTCTAGTTGGGCTTTCGGTTACCGAAGTGATTACAGCAAGCATAACCGTTGTTATAGGCACAACCTTAAATTACTTTTTGGATGACAAAATCAATAAAGCCGAGATTCTTTTCCCAGGAGTTGGTTGTTTTTTGGTTGCGGTTTGTCTAGGCTCTGCTGTTCATGCATCTAATACTGCCGATAATCAAGCTAAGCTCAAGGATTTTTCAAGTCATCATAATGATGCATCCTTGTATGTATTGTGTGCTTACATATCTTGTTTTGTTATCGGAATAATTCTAAACATCATTTTCCTTTACCACCCTGTCTTGAACTTACCCAAGTCATCATTGACAAATTATTTGGGAGACTGGAATGGAAGAGGCTGGGCCTTGCTGGCTGGTTTCCTTTGTGGATTTGGGAATGGCCTTCAGTTTATGGGAGGTCAAGCTGCTGGATATGCAGCAGCTGATGCTGTCCAGGCACTTCCACTTGTGAGCACTTTTTGGGGAATTGTTTTGTTTGGAGAATATAGGAAATCATCAGGAAGAACATATATCTTACTGGGGAGTATGTTGTTTATGTTTATTGTGGCTGTTGGTGTGCTCATGGCATCATCAGGGCACAGGAAACATTGA
Protein sequence

>MsG0580026505.01.T01

MFPTASKEGKTGLIGYSDSDWCGDKSDRRNTSSYLFKFNNAAIAWCTKKQHVTALSSCEVEYIACTFAACKAIWLDNVMKELNCEVEKPLKLKIDNKSAINLAKNPIAHARRIHIETKFYFIMKQVTKGMIEVVYCPTEIQLADGFTKALKIDRFSYFRDNSISERILSAELKMYLVESKGGAIGCMLLALFFLGTWPAVLTLLERRGRLPQHTYLDYSITNFLAAIIIAFTFGQIGNGTVDEPNFLTQLAQDNWPSVMFAMAGGVVLSLGNLSTQYAFALVGLSVTEVITASITVVIGTTLNYFLDDKINKAEILFPGVGCFLVAVCLGSAVHASNTADNQAKLKDFSSHHNDASLYVLCAYISCFVIGIILNIIFLYHPVLNLPKSSLTNYLGDWNGRGWALLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGIVLFGEYRKSSGRTYILLGSMLFMFIVAVGVLMASSGHRKH*