Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004984.01.T01 | XP_013469277.1 | 86.585 | 82 | 2 | 1 | 1 | 82 | 1 | 73 | 1.98E-36 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004984.01.T01 | O49841 | 67.073 | 82 | 14 | 3 | 1 | 82 | 1 | 69 | 1.21E-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004984.01.T01 | B7FF73 | 86.585 | 82 | 2 | 1 | 1 | 82 | 1 | 73 | 9.46e-37 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001312.01 | MsG0180004984.01 | 0.800238 | 1.582505e-48 | 7.331248e-46 |
| MsG0180004157.01 | MsG0180004984.01 | 0.819653 | 1.037533e-52 | 8.032070e-50 |
| MsG0180004984.01 | MsG0180005813.01 | 0.809205 | 2.123226e-50 | 1.238937e-47 |
| MsG0180004984.01 | MsG0180006016.01 | 0.805287 | 1.436079e-49 | 7.568045e-47 |
| MsG0180004984.01 | MsG0280007636.01 | 0.807480 | 4.953031e-50 | 2.761764e-47 |
| MsG0180004984.01 | MsG0280007815.01 | 0.804452 | 2.145975e-49 | 1.106839e-46 |
| MsG0180004984.01 | MsG0280008114.01 | 0.803452 | 3.463265e-49 | 1.740994e-46 |
| MsG0180004984.01 | MsG0280008286.01 | 0.804651 | 1.950142e-49 | 1.011042e-46 |
| MsG0180004984.01 | MsG0280008615.01 | 0.811206 | 7.862061e-51 | 4.836977e-48 |
| MsG0180004984.01 | MsG0280008907.01 | 0.813243 | 2.825414e-51 | 1.835193e-48 |
| MsG0180004984.01 | MsG0280008970.01 | 0.815356 | 9.640066e-52 | 6.631509e-49 |
| MsG0180004984.01 | MsG0280009024.01 | 0.843998 | 9.925753e-59 | 1.580499e-55 |
| MsG0180004984.01 | MsG0280009637.01 | -0.801802 | 7.581720e-49 | 3.654261e-46 |
| MsG0180004984.01 | MsG0280009739.01 | 0.800447 | 1.435425e-48 | 6.685126e-46 |
| MsG0180004984.01 | MsG0280010702.01 | 0.802134 | 6.480068e-49 | 3.149743e-46 |
| MsG0180004984.01 | MsG0280010784.01 | 0.822866 | 1.883619e-53 | 1.595918e-50 |
| MsG0180004984.01 | MsG0280011410.01 | 0.802885 | 4.535732e-49 | 2.247324e-46 |
| MsG0180004984.01 | MsG0380011729.01 | 0.807828 | 4.177831e-50 | 2.350657e-47 |
| MsG0180004984.01 | MsG0380014573.01 | 0.802155 | 6.414600e-49 | 3.119639e-46 |
| MsG0180004984.01 | MsG0380016581.01 | 0.833657 | 4.703597e-56 | 5.452118e-53 |
| MsG0180004984.01 | MsG0380016624.01 | 0.823719 | 1.190497e-53 | 1.033377e-50 |
| MsG0180004984.01 | MsG0380017403.01 | 0.809703 | 1.659881e-50 | 9.814636e-48 |
| MsG0180004984.01 | MsG0380018009.01 | 0.801677 | 8.041877e-49 | 3.863686e-46 |
| MsG0180004984.01 | MsG0480020090.01 | 0.807681 | 4.487838e-50 | 2.515480e-47 |
| MsG0180004984.01 | MsG0480022752.01 | 0.834053 | 3.744126e-56 | 4.392050e-53 |
| MsG0180004984.01 | MsG0480023088.01 | 0.808952 | 2.404433e-50 | 1.393452e-47 |
| MsG0180004984.01 | MsG0480023174.01 | 0.801337 | 9.443720e-49 | 4.498490e-46 |
| MsG0180004984.01 | MsG0480023224.01 | 0.804259 | 2.354087e-49 | 1.208148e-46 |
| MsG0180004984.01 | MsG0580025758.01 | 0.805684 | 1.185426e-49 | 6.311618e-47 |
| MsG0180004984.01 | MsG0580025907.01 | 0.801070 | 1.071131e-48 | 5.068209e-46 |
| MsG0180004984.01 | MsG0580026002.01 | 0.804222 | 2.396157e-49 | 1.228565e-46 |
| MsG0180004984.01 | MsG0580026505.01 | 0.803789 | 2.948364e-49 | 1.495054e-46 |
| MsG0180004984.01 | MsG0580027074.01 | 0.825771 | 3.908197e-54 | 3.596344e-51 |
| MsG0180004984.01 | MsG0580027228.01 | 0.864636 | 1.054540e-64 | 3.334737e-61 |
| MsG0180004984.01 | MsG0680030351.01 | 0.808312 | 3.294987e-50 | 1.877787e-47 |
| MsG0180004984.01 | MsG0680030839.01 | 0.822719 | 2.038238e-53 | 1.719738e-50 |
| MsG0180004984.01 | MsG0680031946.01 | 0.800369 | 1.488312e-48 | 6.918149e-46 |
| MsG0180004984.01 | MsG0680033339.01 | 0.814810 | 1.274395e-51 | 8.637474e-49 |
| MsG0180004984.01 | MsG0680034190.01 | 0.808517 | 2.978532e-50 | 1.706606e-47 |
| MsG0180004984.01 | MsG0780041161.01 | 0.811893 | 5.573573e-51 | 3.491724e-48 |
| MsG0180004984.01 | MsG0780041255.01 | 0.819199 | 1.316719e-52 | 1.006507e-49 |
| MsG0180004984.01 | MsG0880042404.01 | 0.807614 | 4.637875e-50 | 2.594946e-47 |
| MsG0180004984.01 | MsG0880046209.01 | 0.807015 | 6.211508e-50 | 3.421883e-47 |
| MsG0180004984.01 | MsG0880047019.01 | 0.807044 | 6.124343e-50 | 3.376420e-47 |
| MsG0180004984.01 | MsG0880047590.01 | 0.823013 | 1.740234e-53 | 1.480641e-50 |
| MsG0180004984.01 | MsG0880047705.01 | 0.802298 | 5.995736e-49 | 2.926663e-46 |
| MsG0180004984.01 | MsG0880047742.01 | 0.841301 | 5.162401e-58 | 7.552487e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004984.01.T01 | MTR_1g090717 | 86.585 | 82 | 2 | 1 | 1 | 82 | 1 | 73 | 2.40e-40 | 132 |
| MsG0180004984.01.T01 | MTR_7g103070 | 66.197 | 71 | 14 | 2 | 12 | 82 | 13 | 73 | 2.38e-23 | 89.0 |
| MsG0180004984.01.T01 | MTR_1g062760 | 64.789 | 71 | 14 | 2 | 12 | 82 | 11 | 70 | 7.33e-21 | 82.4 |
| MsG0180004984.01.T01 | MTR_8g093740 | 58.537 | 82 | 21 | 3 | 1 | 82 | 1 | 69 | 7.77e-21 | 82.0 |
| MsG0180004984.01.T01 | MTR_3g096350 | 58.904 | 73 | 19 | 2 | 10 | 82 | 7 | 68 | 4.51e-20 | 79.0 |
| MsG0180004984.01.T01 | MTR_3g096350 | 58.904 | 73 | 19 | 2 | 10 | 82 | 7 | 68 | 6.43e-20 | 78.6 |
| MsG0180004984.01.T01 | MTR_3g096350 | 58.904 | 73 | 19 | 2 | 10 | 82 | 7 | 68 | 1.08e-19 | 79.3 |
| MsG0180004984.01.T01 | MTR_1g029450 | 56.944 | 72 | 20 | 2 | 11 | 82 | 13 | 73 | 4.72e-19 | 77.8 |
| MsG0180004984.01.T01 | MTR_2g005510 | 42.683 | 82 | 37 | 1 | 1 | 82 | 1 | 72 | 3.55e-14 | 65.1 |
| MsG0180004984.01.T01 | MTR_1g068730 | 45.122 | 82 | 35 | 2 | 1 | 82 | 1 | 72 | 5.36e-13 | 61.2 |
| MsG0180004984.01.T01 | MTR_1g068740 | 43.902 | 82 | 36 | 2 | 1 | 82 | 1 | 72 | 7.04e-13 | 61.6 |
| MsG0180004984.01.T01 | MTR_1g068740 | 43.902 | 82 | 36 | 2 | 1 | 82 | 1 | 72 | 7.14e-13 | 61.2 |
| MsG0180004984.01.T01 | MTR_1g068730 | 43.902 | 82 | 36 | 2 | 1 | 82 | 1 | 72 | 7.66e-13 | 61.2 |
| MsG0180004984.01.T01 | MTR_2g014990 | 45.333 | 75 | 31 | 1 | 8 | 82 | 6 | 70 | 1.02e-12 | 61.2 |
| MsG0180004984.01.T01 | MTR_8g006970 | 50.000 | 74 | 27 | 2 | 9 | 82 | 2 | 65 | 1.20e-12 | 60.5 |
| MsG0180004984.01.T01 | MTR_4g088090 | 45.333 | 75 | 31 | 1 | 8 | 82 | 6 | 70 | 1.32e-12 | 60.8 |
| MsG0180004984.01.T01 | MTR_7g081700 | 50.000 | 74 | 27 | 2 | 9 | 82 | 2 | 65 | 1.48e-12 | 60.5 |
| MsG0180004984.01.T01 | MTR_4g079350 | 45.333 | 75 | 31 | 1 | 8 | 82 | 6 | 70 | 2.38e-12 | 60.1 |
| MsG0180004984.01.T01 | MTR_2g083860 | 44.000 | 75 | 32 | 1 | 8 | 82 | 6 | 70 | 8.11e-12 | 58.5 |
| MsG0180004984.01.T01 | MTR_1g115325 | 47.222 | 72 | 28 | 2 | 11 | 82 | 11 | 72 | 9.86e-12 | 58.5 |
| MsG0180004984.01.T01 | MTR_8g089985 | 44.000 | 75 | 32 | 1 | 8 | 82 | 10 | 74 | 1.19e-11 | 58.2 |
| MsG0180004984.01.T01 | MTR_4g063160 | 47.222 | 72 | 28 | 2 | 11 | 82 | 11 | 72 | 1.36e-11 | 58.2 |
| MsG0180004984.01.T01 | MTR_7g100020 | 45.833 | 72 | 29 | 2 | 11 | 82 | 11 | 72 | 1.72e-11 | 57.8 |
| MsG0180004984.01.T01 | MTR_2g090865 | 44.595 | 74 | 31 | 1 | 9 | 82 | 5 | 68 | 2.08e-11 | 57.4 |
| MsG0180004984.01.T01 | MTR_2g075950 | 42.667 | 75 | 33 | 1 | 8 | 82 | 6 | 70 | 2.66e-11 | 57.4 |
| MsG0180004984.01.T01 | MTR_3g086980 | 41.333 | 75 | 34 | 1 | 8 | 82 | 9 | 73 | 3.23e-11 | 57.0 |
| MsG0180004984.01.T01 | MTR_2g005500 | 44.737 | 76 | 32 | 2 | 7 | 82 | 1 | 66 | 4.35e-11 | 56.6 |
| MsG0180004984.01.T01 | MTR_1g052475 | 41.892 | 74 | 33 | 1 | 9 | 82 | 9 | 72 | 9.81e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004984.01.T01 | AT5G03530 | 67.073 | 82 | 14 | 3 | 1 | 82 | 1 | 69 | 1.24e-26 | 97.4 |
| MsG0180004984.01.T01 | AT5G03530 | 67.073 | 82 | 14 | 3 | 1 | 82 | 1 | 69 | 1.24e-26 | 97.4 |
| MsG0180004984.01.T01 | AT1G43890 | 65.854 | 82 | 15 | 3 | 1 | 82 | 1 | 69 | 1.80e-25 | 94.4 |
| MsG0180004984.01.T01 | AT1G43890 | 65.854 | 82 | 15 | 3 | 1 | 82 | 1 | 69 | 1.80e-25 | 94.4 |
| MsG0180004984.01.T01 | AT1G43890 | 65.854 | 82 | 15 | 3 | 1 | 82 | 1 | 69 | 1.80e-25 | 94.4 |
| MsG0180004984.01.T01 | AT3G09910 | 58.537 | 82 | 21 | 3 | 1 | 82 | 1 | 69 | 3.07e-17 | 72.8 |
| MsG0180004984.01.T01 | AT3G09910 | 58.537 | 82 | 21 | 3 | 1 | 82 | 1 | 69 | 3.07e-17 | 72.8 |
| MsG0180004984.01.T01 | AT3G09910 | 58.537 | 82 | 21 | 3 | 1 | 82 | 1 | 69 | 3.07e-17 | 72.8 |
| MsG0180004984.01.T01 | AT3G09910 | 62.195 | 82 | 18 | 3 | 1 | 82 | 1 | 69 | 3.73e-17 | 72.4 |
| MsG0180004984.01.T01 | AT3G09910 | 62.195 | 82 | 18 | 3 | 1 | 82 | 1 | 69 | 3.73e-17 | 72.4 |
| MsG0180004984.01.T01 | AT4G17530 | 51.351 | 74 | 26 | 2 | 9 | 82 | 2 | 65 | 5.38e-13 | 61.6 |
| MsG0180004984.01.T01 | AT5G47200 | 51.351 | 74 | 26 | 2 | 9 | 82 | 2 | 65 | 5.91e-13 | 61.6 |
| MsG0180004984.01.T01 | AT5G45750 | 45.333 | 75 | 31 | 1 | 8 | 82 | 6 | 70 | 8.45e-13 | 61.2 |
| MsG0180004984.01.T01 | AT5G03520 | 42.683 | 82 | 37 | 1 | 1 | 82 | 1 | 72 | 9.47e-13 | 61.2 |
| MsG0180004984.01.T01 | AT3G09900 | 42.683 | 82 | 37 | 1 | 1 | 82 | 1 | 72 | 1.26e-12 | 60.8 |
| MsG0180004984.01.T01 | AT4G18800 | 44.000 | 75 | 32 | 1 | 8 | 82 | 6 | 70 | 1.48e-12 | 60.8 |
| MsG0180004984.01.T01 | AT5G60860 | 45.333 | 75 | 31 | 1 | 8 | 82 | 6 | 70 | 2.37e-12 | 60.1 |
| MsG0180004984.01.T01 | AT1G02130 | 50.000 | 74 | 27 | 2 | 9 | 82 | 2 | 65 | 2.65e-12 | 59.7 |
| MsG0180004984.01.T01 | AT5G59840 | 47.222 | 72 | 28 | 2 | 11 | 82 | 11 | 72 | 1.27e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G53610 | 45.833 | 72 | 29 | 2 | 11 | 82 | 11 | 72 | 1.28e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G53610 | 45.833 | 72 | 29 | 2 | 11 | 82 | 11 | 72 | 1.28e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G53610 | 45.833 | 72 | 29 | 2 | 11 | 82 | 11 | 72 | 1.28e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G11730 | 49.315 | 73 | 27 | 2 | 10 | 82 | 3 | 65 | 1.40e-11 | 57.8 |
| MsG0180004984.01.T01 | AT3G46060 | 47.222 | 72 | 28 | 2 | 11 | 82 | 11 | 72 | 1.42e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G46060 | 47.222 | 72 | 28 | 2 | 11 | 82 | 11 | 72 | 1.42e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G46060 | 47.222 | 72 | 28 | 2 | 11 | 82 | 11 | 72 | 1.42e-11 | 58.2 |
| MsG0180004984.01.T01 | AT3G12160 | 43.243 | 74 | 32 | 1 | 9 | 82 | 9 | 72 | 1.88e-11 | 57.8 |
| MsG0180004984.01.T01 | AT1G09630 | 39.744 | 78 | 37 | 1 | 5 | 82 | 2 | 69 | 3.65e-11 | 57.0 |
| MsG0180004984.01.T01 | AT1G18200 | 47.143 | 70 | 27 | 2 | 13 | 82 | 11 | 70 | 3.77e-11 | 57.0 |
| MsG0180004984.01.T01 | AT3G15060 | 41.333 | 75 | 34 | 1 | 8 | 82 | 6 | 70 | 7.75e-11 | 56.2 |
| MsG0180004984.01.T01 | AT4G39990 | 42.857 | 70 | 30 | 1 | 13 | 82 | 15 | 74 | 8.53e-11 | 56.2 |
| MsG0180004984.01.T01 | AT2G33870 | 42.667 | 75 | 33 | 1 | 8 | 82 | 6 | 70 | 8.67e-11 | 55.8 |
| MsG0180004984.01.T01 | AT1G16920 | 44.444 | 72 | 30 | 1 | 11 | 82 | 9 | 70 | 8.69e-11 | 55.8 |
Find 12 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTGAAGCTTACTATT+TGG | 0.159285 | 1:-85219258 | MsG0180004984.01.T01:CDS |
| AAGATTGAAGCTTACTATTT+GGG | 0.304127 | 1:-85219257 | MsG0180004984.01.T01:CDS |
| GATGACCTTTCTCCCACTAT+TGG | 0.342365 | 1:-85219973 | MsG0180004984.01.T01:intron |
| ATGGGTTCTTCTTCAAAAGT+TGG | 0.381996 | 1:-85220099 | MsG0180004984.01.T01:CDS |
| TTGATTGGTGATTCTGGTGT+TGG | 0.435841 | 1:-85220042 | MsG0180004984.01.T01:CDS |
| GAGAACCAATAGTGGGAGAA+AGG | 0.483210 | 1:+85219968 | None:intergenic |
| GAAGAGAAGAGAACCAATAG+TGG | 0.493822 | 1:+85219960 | None:intergenic |
| GGTATTCTTAAATCATTCAC+AGG | 0.501163 | 1:-85219319 | MsG0180004984.01.T01:CDS |
| AAGCTTACTATTTGGGACAC+AGG | 0.560298 | 1:-85219250 | MsG0180004984.01.T01:CDS |
| TTACTATTTGGGACACAGGT+TGG | 0.568882 | 1:-85219246 | MsG0180004984.01.T01:CDS |
| GAAAACGTGATCTAATAACT+AGG | 0.588528 | 1:+85219217 | None:intergenic |
| AAGAGAAGAGAACCAATAGT+GGG | 0.590629 | 1:+85219961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACATGAAAAATAATT+TGG | - | Chr1:85219667-85219686 | MsG0180004984.01.T01:intron | 10.0% |
| !! | AACTAGAAAGAAAAAATAAA+AGG | + | Chr1:85219396-85219415 | None:intergenic | 15.0% |
| !! | TTAACTTCTCTATTATAATA+GGG | - | Chr1:85219898-85219917 | MsG0180004984.01.T01:intron | 15.0% |
| !!! | ATTTTATGTTTTCAAGATTT+TGG | + | Chr1:85219651-85219670 | None:intergenic | 15.0% |
| !!! | TTTAACTTCTCTATTATAAT+AGG | - | Chr1:85219897-85219916 | MsG0180004984.01.T01:intron | 15.0% |
| !! | AAGTATCATAAAATATGACA+AGG | + | Chr1:85219491-85219510 | None:intergenic | 20.0% |
| !! | TTAAAAACTATGAATGAAGA+AGG | + | Chr1:85219882-85219901 | None:intergenic | 20.0% |
| !!! | AAAATCAAGCATTTTACAAT+TGG | - | Chr1:85220041-85220060 | MsG0180004984.01.T01:CDS | 20.0% |
| !!! | TAACTATGATTACTCTTTTA+AGG | - | Chr1:85219257-85219276 | MsG0180004984.01.T01:CDS | 20.0% |
| !!! | TTTCTTGATTCATTTTGATT+TGG | - | Chr1:85219462-85219481 | MsG0180004984.01.T01:intron | 20.0% |
| !!! | TTTTACATTACATACTGAAA+TGG | - | Chr1:85219811-85219830 | MsG0180004984.01.T01:intron | 20.0% |
| ! | AAAGATTGAAGCTTACTATT+TGG | - | Chr1:85220069-85220088 | MsG0180004984.01.T01:CDS | 25.0% |
| ! | AAGATTGAAGCTTACTATTT+GGG | - | Chr1:85220070-85220089 | MsG0180004984.01.T01:CDS | 25.0% |
| !!! | ATGTTTTCAAGATTTTGGAA+AGG | + | Chr1:85219646-85219665 | None:intergenic | 25.0% |
| !!! | ATTGTTTTCAAGATTTTGTG+AGG | - | Chr1:85219613-85219632 | MsG0180004984.01.T01:intron | 25.0% |
| !!! | GGTATTTGTCTTTGAAATTT+TGG | - | Chr1:85219940-85219959 | MsG0180004984.01.T01:intron | 25.0% |
| !!! | GTTTTGATAAGTTGATATCT+AGG | - | Chr1:85219849-85219868 | MsG0180004984.01.T01:intron | 25.0% |
| !!! | TCTTTTAAGGTTTTGTTGAT+TGG | - | Chr1:85219270-85219289 | MsG0180004984.01.T01:CDS | 25.0% |
| !!! | TTGTTTTCAAGATTTTGTGA+GGG | - | Chr1:85219614-85219633 | MsG0180004984.01.T01:intron | 25.0% |
| CTCATGATGAAAGAAAAACT+AGG | + | Chr1:85219766-85219785 | None:intergenic | 30.0% | |
| GGTATTCTTAAATCATTCAC+AGG | - | Chr1:85220008-85220027 | MsG0180004984.01.T01:CDS | 30.0% | |
| !! | ATAAGTTGATATCTAGGCTT+TGG | - | Chr1:85219855-85219874 | MsG0180004984.01.T01:intron | 30.0% |
| AAGAGAAGAGAACCAATAGT+GGG | + | Chr1:85219369-85219388 | None:intergenic | 35.0% | |
| ATGGGTTCTTCTTCAAAAGT+TGG | - | Chr1:85219228-85219247 | MsG0180004984.01.T01:CDS | 35.0% | |
| CATACGTAGAGTTGTTCTAA+TGG | - | Chr1:85219517-85219536 | MsG0180004984.01.T01:intron | 35.0% | |
| CATTAGAACAACTCTACGTA+TGG | + | Chr1:85219519-85219538 | None:intergenic | 35.0% | |
| GGTAGTTTATCTGAATTCTG+TGG | - | Chr1:85219919-85219938 | MsG0180004984.01.T01:intron | 35.0% | |
| TTTGTTGCATACTGAGTTGT+TGG | - | Chr1:85219987-85220006 | MsG0180004984.01.T01:CDS | 35.0% | |
| !! | GTTTTGTTGATTGGTGATTC+TGG | - | Chr1:85219279-85219298 | MsG0180004984.01.T01:CDS | 35.0% |
| ACTAGGATTAAGCATGTGCT+CGG | + | Chr1:85219749-85219768 | None:intergenic | 40.0% | |
| GAAGAGAAGAGAACCAATAG+TGG | + | Chr1:85219370-85219389 | None:intergenic | 40.0% | |
| ! | AAGCTTACTATTTGGGACAC+AGG | - | Chr1:85220077-85220096 | MsG0180004984.01.T01:CDS | 40.0% |
| ! | TTACTATTTGGGACACAGGT+TGG | - | Chr1:85220081-85220100 | MsG0180004984.01.T01:CDS | 40.0% |
| ! | TTGATTGGTGATTCTGGTGT+TGG | - | Chr1:85219285-85219304 | MsG0180004984.01.T01:CDS | 40.0% |
| GATGACCTTTCTCCCACTAT+TGG | - | Chr1:85219354-85219373 | MsG0180004984.01.T01:intron | 45.0% | |
| ! | GAGAACCAATAGTGGGAGAA+AGG | + | Chr1:85219362-85219381 | None:intergenic | 45.0% |
| GGATTAAGCATGTGCTCGGT+TGG | + | Chr1:85219745-85219764 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 85219228 | 85220121 | 85219228 | ID=MsG0180004984.01;Name=MsG0180004984.01 |
| Chr1 | mRNA | 85219228 | 85220121 | 85219228 | ID=MsG0180004984.01.T01;Parent=MsG0180004984.01;Name=MsG0180004984.01.T01;_AED=0.49;_eAED=0.58;_QI=0|0|0|1|0|0|2|0|88 |
| Chr1 | exon | 85219974 | 85220121 | 85219974 | ID=MsG0180004984.01.T01:exon:28185;Parent=MsG0180004984.01.T01 |
| Chr1 | exon | 85219228 | 85219346 | 85219228 | ID=MsG0180004984.01.T01:exon:28184;Parent=MsG0180004984.01.T01 |
| Chr1 | CDS | 85219974 | 85220121 | 85219974 | ID=MsG0180004984.01.T01:cds;Parent=MsG0180004984.01.T01 |
| Chr1 | CDS | 85219228 | 85219346 | 85219228 | ID=MsG0180004984.01.T01:cds;Parent=MsG0180004984.01.T01 |
| Gene Sequence |
| Protein sequence |
