AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029284.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029284.01.T01 MTR_5g083790 100.000 206 0 0 1 206 1 206 4.41e-152 420
MsG0580029284.01.T01 MTR_1g023590 91.262 206 18 0 1 206 1 206 4.21e-138 384
MsG0580029284.01.T01 MTR_7g057770 90.291 206 20 0 1 206 1 206 1.81e-137 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029284.01.T01 AT4G13170 85.922 206 29 0 1 206 1 206 4.72e-135 377
MsG0580029284.01.T01 AT5G48760 84.951 206 31 0 1 206 1 206 8.35e-135 376
MsG0580029284.01.T01 AT5G48760 84.951 206 31 0 1 206 1 206 8.35e-135 376
MsG0580029284.01.T01 AT3G07110 84.951 206 31 0 1 206 1 206 7.33e-134 374
MsG0580029284.01.T01 AT3G24830 83.981 206 33 0 1 206 1 206 2.32e-132 370
MsG0580029284.01.T01 AT3G07110 84.541 207 31 1 1 206 1 207 2.96e-132 370

Find 58 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGCAGATCAATAAATTA+AGG 0.231717 5:-94712153 MsG0580029284.01.T01:CDS
TGAAGTACATGAGGTTTCTT+AGG 0.283670 5:-94714337 MsG0580029284.01.T01:CDS
CTCAGTAATTTCTCAATAAT+AGG 0.314235 5:+94711926 None:intergenic
TGTTTAGTTCTATATGTTGT+TGG 0.354471 5:-94712001 MsG0580029284.01.T01:three_prime_UTR
AATAGGACCATGACTGGGTT+TGG 0.418442 5:+94714301 None:intergenic
ATCCTCTTAATCTTGTCATA+TGG 0.423761 5:+94712647 None:intergenic
GAGAAAGGAAAGATCACAAT+TGG 0.426472 5:-94712188 MsG0580029284.01.T01:CDS
CTCCATATGACAAGATTAAG+AGG 0.429099 5:-94712649 MsG0580029284.01.T01:CDS
TAGGGTATTGAGGCTTCAAA+AGG 0.430477 5:-94712393 MsG0580029284.01.T01:CDS
GTCAAGTACTGAATAGGCTT+TGG 0.436523 5:-94712070 MsG0580029284.01.T01:exon
GCTCCTGTCAAGTACTGAAT+AGG 0.437980 5:-94712076 MsG0580029284.01.T01:exon
TTTCTGGTTTGCTCATTAAG+AGG 0.441395 5:-94711949 MsG0580029284.01.T01:three_prime_UTR
GAGGGAGCCCTAAAATGAAT+AGG 0.445189 5:+94714284 None:intergenic
TAATCAGCAGTAACTATCAT+TGG 0.449542 5:-94711876 MsG0580029284.01.T01:three_prime_UTR
TGAACTTACTTGAGAGCATC+AGG 0.458956 5:+94712617 None:intergenic
GAAGCAGATCAATAAATTAA+GGG 0.462554 5:-94712152 MsG0580029284.01.T01:CDS
GAACTACTATGATATCATAA+AGG 0.465509 5:-94712324 MsG0580029284.01.T01:intron
GATTTGCATGTCCGGTGGAC+TGG 0.467358 5:-94714372 MsG0580029284.01.T01:CDS
TAAATGAATTTAGGGTATTG+AGG 0.470143 5:-94712403 MsG0580029284.01.T01:intron
AGCTGCTCTTGCTAGGTTGA+AGG 0.470276 5:-94712690 MsG0580029284.01.T01:CDS
AGTTCTCCAGAAAATCTTAG+AGG 0.472646 5:+94714265 None:intergenic
AAAATTGTGGACGAGAAGCT+TGG 0.483493 5:-94712118 MsG0580029284.01.T01:CDS
AAATTGTGGACGAGAAGCTT+GGG 0.489613 5:-94712117 MsG0580029284.01.T01:CDS
TCTCCACGCTTTGTCTTGTG+TGG 0.491410 5:+94712713 None:intergenic
ACATGAGGTTTCTTAGGAAG+AGG 0.494032 5:-94714331 MsG0580029284.01.T01:CDS
GCATGTCCGGTGGACTGGTT+AGG 0.502693 5:-94714367 MsG0580029284.01.T01:CDS
AAAATGAATAGGACCATGAC+TGG 0.503601 5:+94714295 None:intergenic
GGAATTGGAAAATAAGAGAA+AGG 0.504497 5:-94712203 MsG0580029284.01.T01:CDS
AATTGTCAGCTGAGGTTGGA+TGG 0.505889 5:-94712346 MsG0580029284.01.T01:CDS
AGGAGCAAGTACTTGTAGTT+CGG 0.510535 5:+94712093 None:intergenic
GGACACAAATTCTGTCTGCT+TGG 0.514702 5:-94712371 MsG0580029284.01.T01:CDS
ATAAGAAGAAAGAATTGAAG+AGG 0.519651 5:+94711842 None:intergenic
TGCTGATTAAGTAACAATAG+TGG 0.522104 5:+94711890 None:intergenic
GACACTAGATATGTTAATCT+CGG 0.531390 5:-94711979 MsG0580029284.01.T01:three_prime_UTR
GTGGAGAAGCTGCTCTTGCT+AGG 0.536980 5:-94712697 MsG0580029284.01.T01:CDS
TGTGAAGAGATTTGCATGTC+CGG 0.549696 5:-94714380 MsG0580029284.01.T01:CDS
GACTCTCTTTGCACATGCGC+CGG 0.550515 5:+94714493 None:intergenic
AAGCCTATTCAGTACTTGAC+AGG 0.553701 5:+94712073 None:intergenic
TTAATCTTGTCATATGGAGG+TGG 0.558115 5:+94712653 None:intergenic
GGACAATTGTCAGCTGAGGT+TGG 0.562938 5:-94712350 MsG0580029284.01.T01:CDS
GCTTGGACAATTGTCAGCTG+AGG 0.569812 5:-94712354 MsG0580029284.01.T01:CDS
CTCTTAATCTTGTCATATGG+AGG 0.571934 5:+94712650 None:intergenic
GCTAGGTTGAAGGTCTATGA+AGG 0.574592 5:-94712680 MsG0580029284.01.T01:CDS
GTTCTCCAGAAAATCTTAGA+GGG 0.584296 5:+94714266 None:intergenic
GATGCTCGCCACCACATGCT+AGG 0.584832 5:-94714464 MsG0580029284.01.T01:CDS
CTCGCCACCACATGCTAGGT+CGG 0.592865 5:-94714460 MsG0580029284.01.T01:CDS
AGGGTATTGAGGCTTCAAAA+GGG 0.594183 5:-94712392 MsG0580029284.01.T01:CDS
GGCAGAAAATGAAGTACATG+AGG 0.595104 5:-94714346 MsG0580029284.01.T01:CDS
ATATGACAAGATTAAGAGGA+TGG 0.595460 5:-94712645 MsG0580029284.01.T01:CDS
TTTCTGCCTAACCAGTCCAC+CGG 0.600425 5:+94714361 None:intergenic
ATGAATACCAAACCCAGTCA+TGG 0.611358 5:-94714308 MsG0580029284.01.T01:CDS
GGTGAAAGCTGAGAAAATTG+TGG 0.628360 5:-94712131 MsG0580029284.01.T01:CDS
ATTCCACACAAGACAAAGCG+TGG 0.632644 5:-94712716 MsG0580029284.01.T01:CDS
AAATGAATAGGACCATGACT+GGG 0.669561 5:+94714296 None:intergenic
GAAGAGATTTGCATGTCCGG+TGG 0.677614 5:-94714377 MsG0580029284.01.T01:CDS
ACGCTAACCGACCTAGCATG+TGG 0.681605 5:+94714453 None:intergenic
GTAGCAAAAGAGTTACTCAA+CGG 0.709986 5:-94714425 MsG0580029284.01.T01:CDS
CTAACCGACCTAGCATGTGG+TGG 0.710751 5:+94714456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATGAAATTATATTTTTA+GGG - Chr5:94712635-94712654 MsG0580029284.01.T01:CDS 10.0%
!!! TATCATGAAATTATATTTTT+AGG - Chr5:94712634-94712653 MsG0580029284.01.T01:CDS 10.0%
!!! TGAAAATTGTTTTTTTTTTT+TGG - Chr5:94713630-94713649 MsG0580029284.01.T01:intron 10.0%
!! AAATTACATAAAATATGTGT+AGG - Chr5:94713875-94713894 MsG0580029284.01.T01:intron 15.0%
!! AATTACATAAAATATGTGTA+GGG - Chr5:94713876-94713895 MsG0580029284.01.T01:intron 15.0%
!!! ATCTAAGTTTAGTATTTTTA+TGG - Chr5:94713798-94713817 MsG0580029284.01.T01:intron 15.0%
!!! TTTGAATTTTTGTGTTTATA+GGG + Chr5:94713840-94713859 None:intergenic 15.0%
!! CATAAAAGTGATATACTTAA+TGG - Chr5:94712387-94712406 MsG0580029284.01.T01:CDS 20.0%
!! TAGAATGATACTACATAATA+AGG - Chr5:94713407-94713426 MsG0580029284.01.T01:intron 20.0%
!! TATTTGTCAAAATTTGTGTT+TGG - Chr5:94713384-94713403 MsG0580029284.01.T01:intron 20.0%
!! TGAATGTGTAAATGAATTTA+GGG - Chr5:94713969-94713988 MsG0580029284.01.T01:intron 20.0%
!!! AGTTTAGTATTTTTATGGTT+AGG - Chr5:94713803-94713822 MsG0580029284.01.T01:intron 20.0%
!!! CTTTGAATTTTTGTGTTTAT+AGG + Chr5:94713841-94713860 None:intergenic 20.0%
!!! GTGTTTATATGATAGTTTTT+TGG - Chr5:94712257-94712276 MsG0580029284.01.T01:intron 20.0%
!!! GTTTTTTAATTTGATAGTGT+TGG - Chr5:94712217-94712236 MsG0580029284.01.T01:intron 20.0%
! AACACAAACATTCTAAACAT+CGG + Chr5:94713553-94713572 None:intergenic 25.0%
! AAGCTACTATTTAGTAGAAT+AGG - Chr5:94713254-94713273 MsG0580029284.01.T01:intron 25.0%
! ACATAATAAGGTAAAACATG+TGG - Chr5:94713419-94713438 MsG0580029284.01.T01:intron 25.0%
! ACTCTATAACATAACTGAAT+TGG - Chr5:94713093-94713112 MsG0580029284.01.T01:intron 25.0%
! ACTTAAGAACATATCATCAT+AGG + Chr5:94712769-94712788 None:intergenic 25.0%
! AGAAGCAGATCAATAAATTA+AGG - Chr5:94714227-94714246 MsG0580029284.01.T01:intron 25.0%
! ATAAGAAGAAAGAATTGAAG+AGG + Chr5:94714541-94714560 None:intergenic 25.0%
! CAAAAATTCAAAGTTAATCC+AGG - Chr5:94713848-94713867 MsG0580029284.01.T01:intron 25.0%
! CTAATTGAATTTGTAGTGTT+TGG - Chr5:94712337-94712356 MsG0580029284.01.T01:CDS 25.0%
! CTCAGTAATTTCTCAATAAT+AGG + Chr5:94714457-94714476 None:intergenic 25.0%
! CTGAATGTGTAAATGAATTT+AGG - Chr5:94713968-94713987 MsG0580029284.01.T01:intron 25.0%
! GAACTACTATGATATCATAA+AGG - Chr5:94714056-94714075 MsG0580029284.01.T01:intron 25.0%
! GAAGCAGATCAATAAATTAA+GGG - Chr5:94714228-94714247 MsG0580029284.01.T01:intron 25.0%
! GAAGCTTCTATTTAGTATAA+TGG - Chr5:94713032-94713051 MsG0580029284.01.T01:intron 25.0%
! TACTAACATAAGCATTTGTA+AGG - Chr5:94712717-94712736 MsG0580029284.01.T01:CDS 25.0%
! TTAAATAAGCCAATTCAAAC+AGG + Chr5:94712690-94712709 None:intergenic 25.0%
!! ATTTTATGTAATTTCATGCC+TGG + Chr5:94713869-94713888 None:intergenic 25.0%
!!! GTAAATCTTTTGTTGATGAT+AGG - Chr5:94714156-94714175 MsG0580029284.01.T01:intron 25.0%
!!! TAAATGAATTTAGGGTATTG+AGG - Chr5:94713977-94713996 MsG0580029284.01.T01:intron 25.0%
!!! TGTTTAGTTCTATATGTTGT+TGG - Chr5:94714379-94714398 MsG0580029284.01.T01:CDS 25.0%
!!! TTTTAAGTGTTGTCAAATAG+AGG - Chr5:94712801-94712820 MsG0580029284.01.T01:intron 25.0%
!!! TTTTTTGCTATTGATATCAC+TGG - Chr5:94713343-94713362 MsG0580029284.01.T01:intron 25.0%
AAAATAGGACCTGTTTGAAT+TGG - Chr5:94712678-94712697 MsG0580029284.01.T01:CDS 30.0%
AAGCATTTGTAAGGCTATTT+GGG - Chr5:94712726-94712745 MsG0580029284.01.T01:intron 30.0%
AGCTGGTAAAAATAAGCTAT+AGG - Chr5:94712486-94712505 MsG0580029284.01.T01:intron 30.0%
ATATGACAAGATTAAGAGGA+TGG - Chr5:94713735-94713754 MsG0580029284.01.T01:intron 30.0%
ATCCTCTTAATCTTGTCATA+TGG + Chr5:94713736-94713755 None:intergenic 30.0%
GACACTAGATATGTTAATCT+CGG - Chr5:94714401-94714420 MsG0580029284.01.T01:CDS 30.0%
GCTGGTAAAAATAAGCTATA+GGG - Chr5:94712487-94712506 MsG0580029284.01.T01:intron 30.0%
GGAATTGGAAAATAAGAGAA+AGG - Chr5:94714177-94714196 MsG0580029284.01.T01:intron 30.0%
GTTCAAATTAAGCTATGCTA+CGG + Chr5:94713313-94713332 None:intergenic 30.0%
TAAGCATTTGTAAGGCTATT+TGG - Chr5:94712725-94712744 MsG0580029284.01.T01:intron 30.0%
TAATCAGCAGTAACTATCAT+TGG - Chr5:94714504-94714523 MsG0580029284.01.T01:CDS 30.0%
TAGAATAGGTTGTCATAAAG+AGG - Chr5:94713268-94713287 MsG0580029284.01.T01:intron 30.0%
TATAAGCTAATTCCATAAGC+TGG - Chr5:94712469-94712488 MsG0580029284.01.T01:intron 30.0%
! AGGGTTTTCTTTGTGTTTTT+AGG + Chr5:94711835-94711854 None:intergenic 30.0%
! TCATGGTCCTATTCATTTTA+GGG - Chr5:94712089-94712108 MsG0580029284.01.T01:CDS 30.0%
! TGCTGATTAAGTAACAATAG+TGG + Chr5:94714493-94714512 None:intergenic 30.0%
! TTTTATGCGATTGACAACAT+TGG - Chr5:94713128-94713147 MsG0580029284.01.T01:intron 30.0%
!! ACCATTTTTGTGTAGAGTTT+TGG + Chr5:94711859-94711878 None:intergenic 30.0%
!! TAGTATAATGGATTGTCAGA+TGG - Chr5:94713044-94713063 MsG0580029284.01.T01:intron 30.0%
!!! AGCTTATTTTTACCAGCTTA+TGG + Chr5:94712484-94712503 None:intergenic 30.0%
!!! ATATTTTTAGGGTTGTCATC+TGG - Chr5:94712646-94712665 MsG0580029284.01.T01:CDS 30.0%
!!! CTTTTGTTGATGATAGGAAT+TGG - Chr5:94714162-94714181 MsG0580029284.01.T01:intron 30.0%
!!! TTGTGTTTTTAGGTTTTGCA+GGG + Chr5:94711825-94711844 None:intergenic 30.0%
!!! TTTGTGTTTTTAGGTTTTGC+AGG + Chr5:94711826-94711845 None:intergenic 30.0%
!!! TTTTTTGGTTGCTGTAAATG+TGG - Chr5:94712272-94712291 MsG0580029284.01.T01:intron 30.0%
AAAATGAATAGGACCATGAC+TGG + Chr5:94712088-94712107 None:intergenic 35.0%
AAATGAATAGGACCATGACT+GGG + Chr5:94712087-94712106 None:intergenic 35.0%
ACTAAATAGTAGCTTCCACA+TGG + Chr5:94713249-94713268 None:intergenic 35.0%
AGTTCTCCAGAAAATCTTAG+AGG + Chr5:94712118-94712137 None:intergenic 35.0%
ATCACCTAAGATAAACCATG+TGG - Chr5:94713231-94713250 MsG0580029284.01.T01:intron 35.0%
CGTAGAGGAATTTGAACTAA+TGG - Chr5:94712838-94712857 MsG0580029284.01.T01:intron 35.0%
CTCCATATGACAAGATTAAG+AGG - Chr5:94713731-94713750 MsG0580029284.01.T01:intron 35.0%
CTCTTAATCTTGTCATATGG+AGG + Chr5:94713733-94713752 None:intergenic 35.0%
GAGAAAGGAAAGATCACAAT+TGG - Chr5:94714192-94714211 MsG0580029284.01.T01:intron 35.0%
GCCAAAACTCTACACAAAAA+TGG - Chr5:94711855-94711874 MsG0580029284.01.T01:three_prime_UTR 35.0%
GTAGCAAAAGAGTTACTCAA+CGG - Chr5:94711955-94711974 MsG0580029284.01.T01:three_prime_UTR 35.0%
GTGTAGGGACTAAACTTAAA+AGG - Chr5:94713891-94713910 MsG0580029284.01.T01:intron 35.0%
GTTCTCCAGAAAATCTTAGA+GGG + Chr5:94712117-94712136 None:intergenic 35.0%
TACTTTGCATTTGACAACAC+TGG - Chr5:94713480-94713499 MsG0580029284.01.T01:intron 35.0%
TATTGTTTGCGATGCACTAT+TGG - Chr5:94712862-94712881 MsG0580029284.01.T01:intron 35.0%
TGAAGTACATGAGGTTTCTT+AGG - Chr5:94712043-94712062 MsG0580029284.01.T01:three_prime_UTR 35.0%
TGTTATAGAGTACAGAACTC+TGG + Chr5:94713084-94713103 None:intergenic 35.0%
TTAATCTTGTCATATGGAGG+TGG + Chr5:94713730-94713749 None:intergenic 35.0%
TTGACTAAAAAAGACCCGTT+TGG + Chr5:94712533-94712552 None:intergenic 35.0%
TTGTAGAATGATACCACATC+AGG - Chr5:94712998-94713017 MsG0580029284.01.T01:intron 35.0%
! GTCATGGTCCTATTCATTTT+AGG - Chr5:94712088-94712107 MsG0580029284.01.T01:CDS 35.0%
!! TAATCTCGGAAGTTGTTTTC+TGG - Chr5:94714415-94714434 MsG0580029284.01.T01:CDS 35.0%
!! TATAATGGATTGTCAGATGG+AGG - Chr5:94713047-94713066 MsG0580029284.01.T01:intron 35.0%
!! TTTCTGGTTTGCTCATTAAG+AGG - Chr5:94714431-94714450 MsG0580029284.01.T01:CDS 35.0%
!! TTTTGTGTAGAGTTTTGGCA+GGG + Chr5:94711854-94711873 None:intergenic 35.0%
!! TTTTTGTGTAGAGTTTTGGC+AGG + Chr5:94711855-94711874 None:intergenic 35.0%
AAAATTGTGGACGAGAAGCT+TGG - Chr5:94714262-94714281 MsG0580029284.01.T01:CDS 40.0%
AAATTGTGGACGAGAAGCTT+GGG - Chr5:94714263-94714282 MsG0580029284.01.T01:CDS 40.0%
AAGCCTATTCAGTACTTGAC+AGG + Chr5:94714310-94714329 None:intergenic 40.0%
ACATGAGGTTTCTTAGGAAG+AGG - Chr5:94712049-94712068 MsG0580029284.01.T01:three_prime_UTR 40.0%
AGGAGCAAGTACTTGTAGTT+CGG + Chr5:94714290-94714309 None:intergenic 40.0%
AGTAAGTGACGGTTACCAAA+CGG - Chr5:94712515-94712534 MsG0580029284.01.T01:intron 40.0%
ATAGGGTCATGAGTAAGTGA+CGG - Chr5:94712504-94712523 MsG0580029284.01.T01:intron 40.0%
ATCTGGTCGGAGTTCAAAAT+AGG - Chr5:94712663-94712682 MsG0580029284.01.T01:CDS 40.0%
ATGAATACCAAACCCAGTCA+TGG - Chr5:94712072-94712091 MsG0580029284.01.T01:exon 40.0%
CAAATGCAGCTACACTACTA+TGG + Chr5:94712899-94712918 None:intergenic 40.0%
CTCTACACAAAAATGGTGTC+AGG - Chr5:94711862-94711881 MsG0580029284.01.T01:three_prime_UTR 40.0%
GAGAATGTTTGTGACAACAC+TGG - Chr5:94713155-94713174 MsG0580029284.01.T01:intron 40.0%
GATACAGCACTATATCGTAG+AGG - Chr5:94712823-94712842 MsG0580029284.01.T01:intron 40.0%
GCTTCCACATGGTTTATCTT+AGG + Chr5:94713238-94713257 None:intergenic 40.0%
GGCAGAAAATGAAGTACATG+AGG - Chr5:94712034-94712053 MsG0580029284.01.T01:three_prime_UTR 40.0%
GGTGAAAGCTGAGAAAATTG+TGG - Chr5:94714249-94714268 MsG0580029284.01.T01:intron 40.0%
GGTTGCTGTAAATGTGGTTA+TGG - Chr5:94712278-94712297 MsG0580029284.01.T01:intron 40.0%
TCTACATGCTTTACCTGATG+TGG + Chr5:94713014-94713033 None:intergenic 40.0%
TGTGAAGAGATTTGCATGTC+CGG - Chr5:94712000-94712019 MsG0580029284.01.T01:three_prime_UTR 40.0%
! ACAAAAATGGTGTCAGGTTC+CGG - Chr5:94711868-94711887 MsG0580029284.01.T01:three_prime_UTR 40.0%
! ATTTTTGCATTTGACGACGC+TGG - Chr5:94713583-94713602 MsG0580029284.01.T01:intron 40.0%
!! AGGGTATTGAGGCTTCAAAA+GGG - Chr5:94713988-94714007 MsG0580029284.01.T01:intron 40.0%
!! ATTTTCTGGAGAACTCTTCG+TGG - Chr5:94712123-94712142 MsG0580029284.01.T01:CDS 40.0%
!! GTCAAGTACTGAATAGGCTT+TGG - Chr5:94714310-94714329 MsG0580029284.01.T01:CDS 40.0%
!! TAGGGTATTGAGGCTTCAAA+AGG - Chr5:94713987-94714006 MsG0580029284.01.T01:intron 40.0%
!! TGAACTTACTTGAGAGCATC+AGG + Chr5:94713766-94713785 None:intergenic 40.0%
!! TTTTCTGGAGAACTCTTCGT+GGG - Chr5:94712124-94712143 MsG0580029284.01.T01:CDS 40.0%
!!! GTTTTTAGGTTTTGCAGGGA+CGG + Chr5:94711821-94711840 None:intergenic 40.0%
!!! TTTTAGGGTTGTCATCTGGT+CGG - Chr5:94712650-94712669 MsG0580029284.01.T01:CDS 40.0%
AATAGGACCATGACTGGGTT+TGG + Chr5:94712082-94712101 None:intergenic 45.0%
AATTGTCAGCTGAGGTTGGA+TGG - Chr5:94714034-94714053 MsG0580029284.01.T01:intron 45.0%
ATTCCACACAAGACAAAGCG+TGG - Chr5:94713664-94713683 MsG0580029284.01.T01:intron 45.0%
GAGGGAGCCCTAAAATGAAT+AGG + Chr5:94712099-94712118 None:intergenic 45.0%
GGACACAAATTCTGTCTGCT+TGG - Chr5:94714009-94714028 MsG0580029284.01.T01:intron 45.0%
GTAAGTGACGGTTACCAAAC+GGG - Chr5:94712516-94712535 MsG0580029284.01.T01:intron 45.0%
TAAGCTATGCTACGGAGCTA+TGG + Chr5:94713305-94713324 None:intergenic 45.0%
! GCTAGGTTGAAGGTCTATGA+AGG - Chr5:94713700-94713719 MsG0580029284.01.T01:intron 45.0%
!! GCTCCTGTCAAGTACTGAAT+AGG - Chr5:94714304-94714323 MsG0580029284.01.T01:CDS 45.0%
GAAGAGATTTGCATGTCCGG+TGG - Chr5:94712003-94712022 MsG0580029284.01.T01:three_prime_UTR 50.0%
GCTTGGACAATTGTCAGCTG+AGG - Chr5:94714026-94714045 MsG0580029284.01.T01:intron 50.0%
GGACAATTGTCAGCTGAGGT+TGG - Chr5:94714030-94714049 MsG0580029284.01.T01:intron 50.0%
TCTCCACGCTTTGTCTTGTG+TGG + Chr5:94713670-94713689 None:intergenic 50.0%
TTTCTGCCTAACCAGTCCAC+CGG + Chr5:94712022-94712041 None:intergenic 50.0%
! AGCTGCTCTTGCTAGGTTGA+AGG - Chr5:94713690-94713709 MsG0580029284.01.T01:intron 50.0%
!!! GGGCTCCCTCTAAGATTTTC+TGG - Chr5:94712109-94712128 MsG0580029284.01.T01:CDS 50.0%
ACGCTAACCGACCTAGCATG+TGG + Chr5:94711930-94711949 None:intergenic 55.0%
CTAACCGACCTAGCATGTGG+TGG + Chr5:94711927-94711946 None:intergenic 55.0%
GACTCTCTTTGCACATGCGC+CGG + Chr5:94711890-94711909 None:intergenic 55.0%
GATTTGCATGTCCGGTGGAC+TGG - Chr5:94712008-94712027 MsG0580029284.01.T01:three_prime_UTR 55.0%
GTGGAGAAGCTGCTCTTGCT+AGG - Chr5:94713683-94713702 MsG0580029284.01.T01:intron 55.0%
CTCGCCACCACATGCTAGGT+CGG - Chr5:94711920-94711939 MsG0580029284.01.T01:three_prime_UTR 60.0%
GATGCTCGCCACCACATGCT+AGG - Chr5:94711916-94711935 MsG0580029284.01.T01:three_prime_UTR 60.0%
!! GCATGTCCGGTGGACTGGTT+AGG - Chr5:94712013-94712032 MsG0580029284.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 94711814 94714588 94711814 ID=MsG0580029284.01;Name=MsG0580029284.01
Chr5 mRNA 94711814 94714588 94711814 ID=MsG0580029284.01.T01;Parent=MsG0580029284.01;Name=MsG0580029284.01.T01;_AED=0.35;_eAED=0.35;_QI=60|1|1|1|1|1|4|267|206
Chr5 exon 94711814 94712224 94711814 ID=MsG0580029284.01.T01:exon:18214;Parent=MsG0580029284.01.T01
Chr5 exon 94712325 94712412 94712325 ID=MsG0580029284.01.T01:exon:18213;Parent=MsG0580029284.01.T01
Chr5 exon 94712626 94712742 94712626 ID=MsG0580029284.01.T01:exon:18212;Parent=MsG0580029284.01.T01
Chr5 exon 94714257 94714588 94714257 ID=MsG0580029284.01.T01:exon:18211;Parent=MsG0580029284.01.T01
Chr5 five_prime_UTR 94714529 94714588 94714529 ID=MsG0580029284.01.T01:five_prime_utr;Parent=MsG0580029284.01.T01
Chr5 CDS 94714257 94714528 94714257 ID=MsG0580029284.01.T01:cds;Parent=MsG0580029284.01.T01
Chr5 CDS 94712626 94712742 94712626 ID=MsG0580029284.01.T01:cds;Parent=MsG0580029284.01.T01
Chr5 CDS 94712325 94712412 94712325 ID=MsG0580029284.01.T01:cds;Parent=MsG0580029284.01.T01
Chr5 CDS 94712081 94712224 94712081 ID=MsG0580029284.01.T01:cds;Parent=MsG0580029284.01.T01
Chr5 three_prime_UTR 94711814 94712080 94711814 ID=MsG0580029284.01.T01:three_prime_utr;Parent=MsG0580029284.01.T01
Gene Sequence

>MsG0580029284.01.T01

ATGGTGTCAGGTTCCGGCGCATGTGCAAAGAGAGTCGTCATCGATGCTCGCCACCACATGCTAGGTCGGTTAGCGTCGATCGTAGCAAAAGAGTTACTCAACGGACAGAAAGTTGTTGTTGTAAGATGTGAAGAGATTTGCATGTCCGGTGGACTGGTTAGGCAGAAAATGAAGTACATGAGGTTTCTTAGGAAGAGGATGAATACCAAACCCAGTCATGGTCCTATTCATTTTAGGGCTCCCTCTAAGATTTTCTGGAGAACTCTTCGTGGAATGATTCCACACAAGACAAAGCGTGGAGAAGCTGCTCTTGCTAGGTTGAAGGTCTATGAAGGTATTCCACCTCCATATGACAAGATTAAGAGGATGGTTGTTCCTGATGCTCTCAAGGTATTGAGGCTTCAAAAGGGACACAAATTCTGTCTGCTTGGACAATTGTCAGCTGAGGTTGGATGGAACTACTATGATATCATAAAGGAATTGGAAAATAAGAGAAAGGAAAGATCACAATTGGCTTATGAGAAAAAGAAGCAGATCAATAAATTAAGGGTGAAAGCTGAGAAAATTGTGGACGAGAAGCTTGGGTCCGAACTACAAGTACTTGCTCCTGTCAAGTACTGA
Protein sequence

>MsG0580029284.01.T01

MVSGSGACAKRVVIDARHHMLGRLASIVAKELLNGQKVVVVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTLRGMIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALKVLRLQKGHKFCLLGQLSAEVGWNYYDIIKELENKRKERSQLAYEKKKQINKLRVKAEKIVDEKLGSELQVLAPVKY*