Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030073.01.T01 | XP_034219247.1 | 98.387 | 62 | 1 | 0 | 44 | 105 | 1 | 62 | 1.35E-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030073.01.T01 | P49216 | 90.323 | 62 | 6 | 0 | 44 | 105 | 1 | 62 | 2.90E-36 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030073.01.T01 | A0A5E4EP81 | 91.304 | 69 | 6 | 0 | 37 | 105 | 238 | 306 | 3.72e-39 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048922.01 | MsG0580030073.01 | 0.897041 | 2.064058e-76 | 2.290720e-72 |
| MsG0080048933.01 | MsG0580030073.01 | 0.860009 | 2.783355e-63 | 7.497607e-60 |
| MsG0180000118.01 | MsG0580030073.01 | 0.837371 | 5.406540e-57 | 7.007974e-54 |
| MsG0180001169.01 | MsG0580030073.01 | 0.814734 | 1.325047e-51 | 8.962186e-49 |
| MsG0180001829.01 | MsG0580030073.01 | 0.809169 | 2.161120e-50 | 1.259812e-47 |
| MsG0180002738.01 | MsG0580030073.01 | 0.855890 | 4.655025e-62 | 1.090949e-58 |
| MsG0180002810.01 | MsG0580030073.01 | 0.836063 | 1.165189e-56 | 1.451945e-53 |
| MsG0180003115.01 | MsG0580030073.01 | 0.800600 | 1.336015e-48 | 6.246386e-46 |
| MsG0180003313.01 | MsG0580030073.01 | 0.848905 | 4.548334e-60 | 8.475198e-57 |
| MsG0180003585.01 | MsG0580030073.01 | 0.810158 | 1.324958e-50 | 7.927970e-48 |
| MsG0180003897.01 | MsG0580030073.01 | 0.867713 | 1.116810e-65 | 3.937017e-62 |
| MsG0180004607.01 | MsG0580030073.01 | 0.805527 | 1.278648e-49 | 6.780023e-47 |
| MsG0180004829.01 | MsG0580030073.01 | 0.849259 | 3.627780e-60 | 6.838350e-57 |
| MsG0180004946.01 | MsG0580030073.01 | 0.845233 | 4.613309e-59 | 7.637498e-56 |
| MsG0180005361.01 | MsG0580030073.01 | 0.802400 | 5.712422e-49 | 2.795607e-46 |
| MsG0180005573.01 | MsG0580030073.01 | 0.898389 | 5.563968e-77 | 6.562805e-73 |
| MsG0280011060.01 | MsG0580030073.01 | 0.833395 | 5.467806e-56 | 6.288725e-53 |
| MsG0280011308.01 | MsG0580030073.01 | 0.836910 | 7.092246e-57 | 9.065448e-54 |
| MsG0380011643.01 | MsG0580030073.01 | 0.818368 | 2.033110e-52 | 1.519041e-49 |
| MsG0480019165.01 | MsG0580030073.01 | 0.861963 | 7.090360e-64 | 2.042112e-60 |
| MsG0480019632.01 | MsG0580030073.01 | 0.909234 | 7.134159e-82 | 1.374287e-77 |
| MsG0480020895.01 | MsG0580030073.01 | 0.855192 | 7.439810e-62 | 1.703458e-58 |
| MsG0480020911.01 | MsG0580030073.01 | 0.833109 | 6.442185e-56 | 7.346887e-53 |
| MsG0480021279.01 | MsG0580030073.01 | 0.858474 | 8.036426e-63 | 2.053579e-59 |
| MsG0480021417.01 | MsG0580030073.01 | 0.867718 | 1.113179e-65 | 3.924707e-62 |
| MsG0480021879.01 | MsG0580030073.01 | 0.823661 | 1.228446e-53 | 1.064492e-50 |
| MsG0480022363.01 | MsG0580030073.01 | 0.896411 | 3.783936e-76 | 4.089184e-72 |
| MsG0480022789.01 | MsG0580030073.01 | 0.823503 | 1.337195e-53 | 1.153531e-50 |
| MsG0480023050.01 | MsG0580030073.01 | 0.809260 | 2.066533e-50 | 1.207570e-47 |
| MsG0480023380.01 | MsG0580030073.01 | 0.821761 | 3.400113e-53 | 2.791379e-50 |
| MsG0480023467.01 | MsG0580030073.01 | 0.830967 | 2.179206e-55 | 2.332025e-52 |
| MsG0480023774.01 | MsG0580030073.01 | 0.847484 | 1.123184e-59 | 1.999348e-56 |
| MsG0480023931.01 | MsG0580030073.01 | 0.824784 | 6.688776e-54 | 5.984562e-51 |
| MsG0480023970.01 | MsG0580030073.01 | 0.898102 | 7.367367e-77 | 8.584791e-73 |
| MsG0480023996.01 | MsG0580030073.01 | 0.825379 | 4.841463e-54 | 4.405290e-51 |
| MsG0580024059.01 | MsG0580030073.01 | 0.803052 | 4.190827e-49 | 2.085128e-46 |
| MsG0580024481.01 | MsG0580030073.01 | 0.857632 | 1.430495e-62 | 3.553798e-59 |
| MsG0580024540.01 | MsG0580030073.01 | 0.849585 | 2.942615e-60 | 5.604800e-57 |
| MsG0580024738.01 | MsG0580030073.01 | 0.892556 | 1.423265e-74 | 1.308046e-70 |
| MsG0580025073.01 | MsG0580030073.01 | 0.924244 | 9.130679e-90 | 3.815173e-85 |
| MsG0580025348.01 | MsG0580030073.01 | 0.834915 | 2.274251e-56 | 2.737795e-53 |
| MsG0580025750.01 | MsG0580030073.01 | 0.939523 | 1.101691e-99 | 1.139102e-94 |
| MsG0380015494.01 | MsG0580030073.01 | 0.885440 | 8.114468e-72 | 5.570584e-68 |
| MsG0380015857.01 | MsG0580030073.01 | 0.807843 | 4.145924e-50 | 2.333651e-47 |
| MsG0380016577.01 | MsG0580030073.01 | 0.849446 | 3.217693e-60 | 6.101118e-57 |
| MsG0380016607.01 | MsG0580030073.01 | 0.826331 | 2.875983e-54 | 2.688915e-51 |
| MsG0380016622.01 | MsG0580030073.01 | 0.904255 | 1.485939e-79 | 2.279704e-75 |
| MsG0380016678.01 | MsG0580030073.01 | 0.907539 | 4.541197e-81 | 8.090226e-77 |
| MsG0380016733.01 | MsG0580030073.01 | 0.811273 | 7.603648e-51 | 4.686055e-48 |
| MsG0380016744.01 | MsG0580030073.01 | 0.807981 | 3.876335e-50 | 2.189808e-47 |
| MsG0380016760.01 | MsG0580030073.01 | 0.807763 | 4.312761e-50 | 2.422473e-47 |
| MsG0480018164.01 | MsG0580030073.01 | 0.808984 | 2.367716e-50 | 1.373344e-47 |
| MsG0580029284.01 | MsG0580030073.01 | 0.903463 | 3.380850e-79 | 5.010235e-75 |
| MsG0580029702.01 | MsG0580030073.01 | 0.906565 | 1.295925e-80 | 2.207813e-76 |
| MsG0580029703.01 | MsG0580030073.01 | 0.806398 | 8.386954e-50 | 4.547445e-47 |
| MsG0580030073.01 | MsG0680031763.01 | 0.838531 | 2.721768e-57 | 3.655816e-54 |
| MsG0580030073.01 | MsG0680035611.01 | 0.825878 | 3.686349e-54 | 3.402612e-51 |
| MsG0580030073.01 | MsG0780036859.01 | 0.807580 | 4.715684e-50 | 2.636116e-47 |
| MsG0580030073.01 | MsG0780037097.01 | 0.828576 | 8.326784e-55 | 8.309873e-52 |
| MsG0580030073.01 | MsG0780038383.01 | 0.860831 | 1.569709e-63 | 4.349195e-60 |
| MsG0580030073.01 | MsG0780040782.01 | 0.809700 | 1.662438e-50 | 9.828953e-48 |
| MsG0580030073.01 | MsG0780040900.01 | 0.805283 | 1.438687e-49 | 7.580852e-47 |
| MsG0580030073.01 | MsG0780041058.01 | 0.888112 | 7.877143e-73 | 6.019806e-69 |
| MsG0580030073.01 | MsG0780041240.01 | 0.812095 | 5.036599e-51 | 3.172814e-48 |
| MsG0580030073.01 | MsG0780041244.01 | 0.851423 | 8.961812e-61 | 1.813181e-57 |
| MsG0580030073.01 | MsG0780041332.01 | 0.853676 | 2.041220e-61 | 4.445519e-58 |
| MsG0580030073.01 | MsG0780041461.01 | 0.866844 | 2.117247e-65 | 7.240146e-62 |
| MsG0580030073.01 | MsG0780041522.01 | 0.884860 | 1.335958e-71 | 8.959906e-68 |
| MsG0580030073.01 | MsG0880042125.01 | 0.827880 | 1.225211e-54 | 1.198132e-51 |
| MsG0580030073.01 | MsG0880042209.01 | 0.880841 | 3.935092e-70 | 2.253355e-66 |
| MsG0580030073.01 | MsG0880042517.01 | 0.891186 | 4.998192e-74 | 4.336279e-70 |
| MsG0580030073.01 | MsG0880042657.01 | 0.810956 | 8.906043e-51 | 5.443707e-48 |
| MsG0580030073.01 | MsG0880043076.01 | 0.884155 | 2.440889e-71 | 1.592957e-67 |
| MsG0580030073.01 | MsG0880043517.01 | 0.859618 | 3.650757e-63 | 9.701041e-60 |
| MsG0580030073.01 | MsG0880044003.01 | 0.847515 | 1.101277e-59 | 1.962424e-56 |
| MsG0580030073.01 | MsG0880046220.01 | 0.879715 | 9.937805e-70 | 5.444869e-66 |
| MsG0580030073.01 | MsG0880046444.01 | 0.813256 | 2.806700e-51 | 1.823733e-48 |
| MsG0580030073.01 | MsG0880046760.01 | 0.809167 | 2.163135e-50 | 1.260912e-47 |
| MsG0580030073.01 | MsG0880047082.01 | 0.844647 | 6.641030e-59 | 1.079181e-55 |
| MsG0280006629.01 | MsG0580030073.01 | 0.856266 | 3.612873e-62 | 8.573658e-59 |
| MsG0280006664.01 | MsG0580030073.01 | 0.831058 | 2.069594e-55 | 2.220746e-52 |
| MsG0280006747.01 | MsG0580030073.01 | 0.872681 | 2.637345e-67 | 1.113662e-63 |
| MsG0280007055.01 | MsG0580030073.01 | 0.852258 | 5.193448e-61 | 1.079056e-57 |
| MsG0280007643.01 | MsG0580030073.01 | 0.838708 | 2.449899e-57 | 3.308775e-54 |
| MsG0280007995.01 | MsG0580030073.01 | 0.857465 | 1.602163e-62 | 3.958103e-59 |
| MsG0280010232.01 | MsG0580030073.01 | 0.826665 | 2.394560e-54 | 2.260280e-51 |
| MsG0280010495.01 | MsG0580030073.01 | 0.861492 | 9.878899e-64 | 2.800505e-60 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030073.01.T01 | MTR_3g094220 | 98.387 | 62 | 1 | 0 | 44 | 105 | 1 | 62 | 3.61e-41 | 133 |
| MsG0580030073.01.T01 | MTR_3g094220 | 96.825 | 63 | 2 | 0 | 44 | 106 | 1 | 63 | 4.93e-41 | 132 |
| MsG0580030073.01.T01 | MTR_5g097200 | 96.825 | 63 | 2 | 0 | 44 | 106 | 1 | 63 | 5.71e-41 | 132 |
| MsG0580030073.01.T01 | MTR_5g097200 | 98.387 | 62 | 1 | 0 | 44 | 105 | 1 | 62 | 5.77e-41 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030073.01.T01 | AT3G56340 | 87.302 | 63 | 8 | 0 | 44 | 106 | 1 | 63 | 3.64e-36 | 120 |
| MsG0580030073.01.T01 | AT2G40590 | 85.714 | 63 | 9 | 0 | 44 | 106 | 1 | 63 | 2.86e-35 | 118 |
| MsG0580030073.01.T01 | AT2G40510 | 85.714 | 63 | 9 | 0 | 44 | 106 | 1 | 63 | 3.38e-35 | 118 |
Find 21 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGAAAGTGCAGGTTGTT+TGG | 0.255247 | 5:-106242426 | MsG0580030073.01.T01:CDS |
| CAATCAAGAGGTTTCTTGTT+AGG | 0.291662 | 5:-106240859 | MsG0580030073.01.T01:CDS |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5:-106240822 | MsG0580030073.01.T01:CDS |
| ATTGAAAGTGCAGGTTGTTT+GGG | 0.327340 | 5:-106242425 | MsG0580030073.01.T01:CDS |
| AGTGCAGGTTGTTTGGGTTT+TGG | 0.339642 | 5:-106242419 | MsG0580030073.01.T01:CDS |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5:-106241057 | MsG0580030073.01.T01:CDS |
| AAACAACCTGCACTTTCAAT+AGG | 0.434512 | 5:+106242428 | None:intergenic |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5:+106240987 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5:+106241031 | None:intergenic |
| ATTCTTCCTATTGAAAGTGC+AGG | 0.495431 | 5:-106242434 | MsG0580030073.01.T01:CDS |
| GTCAACTGTTGTTGTAATGT+TGG | 0.508966 | 5:+106242376 | None:intergenic |
| CATTACAACAACAGTTGACA+TGG | 0.540817 | 5:-106242372 | MsG0580030073.01.T01:intron |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5:-106241000 | MsG0580030073.01.T01:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5:-106241054 | MsG0580030073.01.T01:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5:-106241033 | MsG0580030073.01.T01:CDS |
| TGAGTTAGATGAATCATCAG+AGG | 0.607780 | 5:-106242459 | MsG0580030073.01.T01:CDS |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5:-106241039 | MsG0580030073.01.T01:CDS |
| AGATGCAAATCATTGATGGA+AGG | 0.617311 | 5:-106242497 | None:intergenic |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5:-106240983 | MsG0580030073.01.T01:intron |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5:+106241010 | None:intergenic |
| AACAGGACAAGGCAATCAAG+AGG | 0.667211 | 5:-106240871 | MsG0580030073.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAACTATAACAAA+CGG | + | Chr5:106241138-106241157 | None:intergenic | 10.0% |
| !! | TTTAAAAAAAAAAAGTGAAA+AGG | - | Chr5:106241829-106241848 | MsG0580030073.01.T01:intron | 10.0% |
| !! | TTTATGAAAACTATATAAAA+GGG | + | Chr5:106241358-106241377 | None:intergenic | 10.0% |
| !!! | AAAAAAAAATTGTATTTTGT+TGG | + | Chr5:106241565-106241584 | None:intergenic | 10.0% |
| !!! | AAAATAAGTGATTTTTATTA+CGG | - | Chr5:106241450-106241469 | MsG0580030073.01.T01:intron | 10.0% |
| !!! | AAAATACATTTTTTTTTTGA+AGG | - | Chr5:106241595-106241614 | MsG0580030073.01.T01:intron | 10.0% |
| !!! | ACAAAATACAATTTTTTTTT+AGG | - | Chr5:106241565-106241584 | MsG0580030073.01.T01:intron | 10.0% |
| !!! | ATATAATCTATTTTCAAATA+TGG | + | Chr5:106241787-106241806 | None:intergenic | 10.0% |
| !!! | TATAATCTATTTTCAAATAT+GGG | + | Chr5:106241786-106241805 | None:intergenic | 10.0% |
| !!! | TTTTATGAAAACTATATAAA+AGG | + | Chr5:106241359-106241378 | None:intergenic | 10.0% |
| !!! | TTTTTAAAAGTTGTAATAAA+CGG | + | Chr5:106241210-106241229 | None:intergenic | 10.0% |
| !! | AAAAAAACAGAAAAATCTTA+CGG | + | Chr5:106242362-106242381 | None:intergenic | 15.0% |
| !! | ATAAAAAAACTATAACAAAC+GGG | + | Chr5:106241137-106241156 | None:intergenic | 15.0% |
| !!! | TTATTTAAAATTTCCTCTTT+TGG | + | Chr5:106241697-106241716 | None:intergenic | 15.0% |
| !! | AAAAAAAGTGAAAAGGTTTA+TGG | - | Chr5:106241836-106241855 | MsG0580030073.01.T01:intron | 20.0% |
| !! | AAAAAAGTGAAAAGGTTTAT+GGG | - | Chr5:106241837-106241856 | MsG0580030073.01.T01:intron | 20.0% |
| !! | CAAACATATCCAATAAAATT+CGG | + | Chr5:106240942-106240961 | None:intergenic | 20.0% |
| !! | CCAAACAAAATATATTTACA+TGG | - | Chr5:106241103-106241122 | MsG0580030073.01.T01:intron | 20.0% |
| !! | TGTTTCTTATATATGGATAT+GGG | + | Chr5:106241883-106241902 | None:intergenic | 20.0% |
| !! | TTTGTTTGCATATATTTGAA+GGG | - | Chr5:106241632-106241651 | MsG0580030073.01.T01:intron | 20.0% |
| !!! | AAAAAAAAACAGTTCACTTT+TGG | + | Chr5:106241017-106241036 | None:intergenic | 20.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | - | Chr5:106242397-106242416 | MsG0580030073.01.T01:CDS | 20.0% |
| !!! | ATAGATTTTTTTTAAAGGAG+AGG | - | Chr5:106241288-106241307 | MsG0580030073.01.T01:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | - | Chr5:106242398-106242417 | MsG0580030073.01.T01:CDS | 20.0% |
| !!! | CCATGTAAATATATTTTGTT+TGG | + | Chr5:106241106-106241125 | None:intergenic | 20.0% |
| !!! | TAGATTTTTTTTAAAGGAGA+GGG | - | Chr5:106241289-106241308 | MsG0580030073.01.T01:intron | 20.0% |
| !!! | TTATTTTAACCCATAACAAA+CGG | - | Chr5:106241538-106241557 | MsG0580030073.01.T01:intron | 20.0% |
| !!! | TTGTTTCTTATATATGGATA+TGG | + | Chr5:106241884-106241903 | None:intergenic | 20.0% |
| !!! | TTTGCTTTGTTTCTTATATA+TGG | + | Chr5:106241890-106241909 | None:intergenic | 20.0% |
| !!! | TTTTGTTTGCATATATTTGA+AGG | - | Chr5:106241631-106241650 | MsG0580030073.01.T01:intron | 20.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | + | Chr5:106242393-106242412 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | + | Chr5:106242394-106242413 | None:intergenic | 25.0% |
| !! | CGAATTTTATTGGATATGTT+TGG | - | Chr5:106240940-106240959 | MsG0580030073.01.T01:intron | 25.0% |
| !!! | AACACATAATCTAGTTTGTT+TGG | + | Chr5:106241428-106241447 | None:intergenic | 25.0% |
| !!! | CTTTTTGGGTTATTATACAA+TGG | + | Chr5:106241064-106241083 | None:intergenic | 25.0% |
| !!! | TATATTTTGTTTGGTAGATC+AGG | + | Chr5:106241097-106241116 | None:intergenic | 25.0% |
| !!! | TATTTTAACCCATAACAAAC+GGG | - | Chr5:106241539-106241558 | MsG0580030073.01.T01:intron | 25.0% |
| !!! | TTTGCGATTTTAATTTGGAT+CGG | + | Chr5:106240889-106240908 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTGTTTGTGAAC+AGG | - | Chr5:106242254-106242273 | MsG0580030073.01.T01:intron | 25.0% |
| AATGACAAAGTGAAATACCT+TGG | + | Chr5:106242179-106242198 | None:intergenic | 30.0% | |
| ATCTAACTCAAAAAGTTTCG+AGG | + | Chr5:106240673-106240692 | None:intergenic | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | + | Chr5:106242178-106242197 | None:intergenic | 30.0% | |
| TCAAATATGGGTCAGATAAT+AGG | + | Chr5:106241774-106241793 | None:intergenic | 30.0% | |
| TCTCTGATCTATTCATTTCT+CGG | - | Chr5:106242031-106242050 | MsG0580030073.01.T01:intron | 30.0% | |
| ! | TCAGGTAAATAAGTGCTTTT+TGG | + | Chr5:106241079-106241098 | None:intergenic | 30.0% |
| ! | TTTGGGTTATTATACAATGG+TGG | + | Chr5:106241061-106241080 | None:intergenic | 30.0% |
| !! | CAGGTAAATAAGTGCTTTTT+GGG | + | Chr5:106241078-106241097 | None:intergenic | 30.0% |
| !! | TTTGAGATTTTCAGCAACAA+TGG | - | Chr5:106241976-106241995 | MsG0580030073.01.T01:intron | 30.0% |
| !!! | ATCGGTTTGCGATTTTAATT+TGG | + | Chr5:106240894-106240913 | None:intergenic | 30.0% |
| !!! | GATTTTAATTTGGATCGGTT+TGG | + | Chr5:106240884-106240903 | None:intergenic | 30.0% |
| AAACAACCTGCACTTTCAAT+AGG | + | Chr5:106240717-106240736 | None:intergenic | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | + | Chr5:106242406-106242425 | None:intergenic | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | + | Chr5:106242135-106242154 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | - | Chr5:106242407-106242426 | MsG0580030073.01.T01:CDS | 35.0% | |
| CAATCAAGAGGTTTCTTGTT+AGG | - | Chr5:106242283-106242302 | MsG0580030073.01.T01:intron | 35.0% | |
| CATTACAACAACAGTTGACA+TGG | - | Chr5:106240770-106240789 | MsG0580030073.01.T01:intron | 35.0% | |
| GTCAACTGTTGTTGTAATGT+TGG | + | Chr5:106240769-106240788 | None:intergenic | 35.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | - | Chr5:106242085-106242104 | MsG0580030073.01.T01:intron | 35.0% | |
| TGAGTTAGATGAATCATCAG+AGG | - | Chr5:106240683-106240702 | MsG0580030073.01.T01:CDS | 35.0% | |
| ! | ATTCTTCCTATTGAAAGTGC+AGG | - | Chr5:106240708-106240727 | MsG0580030073.01.T01:intron | 35.0% |
| ! | ATTGAAAGTGCAGGTTGTTT+GGG | - | Chr5:106240717-106240736 | MsG0580030073.01.T01:intron | 35.0% |
| ! | CGCACAAAACCGAATTTTAT+TGG | - | Chr5:106240930-106240949 | MsG0580030073.01.T01:intron | 35.0% |
| ! | TATTGAAAGTGCAGGTTGTT+TGG | - | Chr5:106240716-106240735 | MsG0580030073.01.T01:intron | 35.0% |
| ! | TTGTGCGATTTTCGGTTTTT+TGG | + | Chr5:106240917-106240936 | None:intergenic | 35.0% |
| !! | ATTCGGTTTTGTGCGATTTT+CGG | + | Chr5:106240925-106240944 | None:intergenic | 35.0% |
| !! | CGATTTTCGGTTTTTTGGAT+CGG | + | Chr5:106240912-106240931 | None:intergenic | 35.0% |
| !! | TTTTGTTTGTGAACAGGACA+AGG | - | Chr5:106242260-106242279 | MsG0580030073.01.T01:intron | 35.0% |
| AAAAACCGATCCAATCCAAG+CGG | + | Chr5:106240983-106241002 | None:intergenic | 40.0% | |
| ACAACAACAGTTGACATGGT+TGG | - | Chr5:106240774-106240793 | MsG0580030073.01.T01:intron | 40.0% | |
| ACAAGCAAAGGAGAAAGCAA+AGG | - | Chr5:106241952-106241971 | MsG0580030073.01.T01:intron | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | - | Chr5:106242088-106242107 | MsG0580030073.01.T01:intron | 40.0% | |
| AGTGAAAAGGTTTATGGGCT+TGG | - | Chr5:106241842-106241861 | MsG0580030073.01.T01:intron | 40.0% | |
| AGTTTATCCACCTCACAACT+AGG | - | Chr5:106240835-106240854 | MsG0580030073.01.T01:CDS | 40.0% | |
| GTGAAAAGGTTTATGGGCTT+GGG | - | Chr5:106241843-106241862 | MsG0580030073.01.T01:intron | 40.0% | |
| GTTGTGAGGTGGATAAACTT+AGG | + | Chr5:106240834-106240853 | None:intergenic | 40.0% | |
| TAGTTGTACTCCTAGTTGTG+AGG | + | Chr5:106240848-106240867 | None:intergenic | 40.0% | |
| ! | TCACAACTAGGAGTACAACT+AGG | - | Chr5:106240847-106240866 | MsG0580030073.01.T01:CDS | 40.0% |
| !! | CTTGGATTGGATCGGTTTTT+GGG | - | Chr5:106240983-106241002 | MsG0580030073.01.T01:intron | 40.0% |
| !! | TGACATGGTTGGTCTATATG+CGG | - | Chr5:106240785-106240804 | MsG0580030073.01.T01:intron | 40.0% |
| !! | TTTGTTGGCCCGTTTGTTAT+GGG | + | Chr5:106241550-106241569 | None:intergenic | 40.0% |
| !! | TTTTGTTGGCCCGTTTGTTA+TGG | + | Chr5:106241551-106241570 | None:intergenic | 40.0% |
| !!! | AGGTTGTTTGGGTTTTGGAA+GGG | - | Chr5:106240728-106240747 | MsG0580030073.01.T01:intron | 40.0% |
| AACAGGACAAGGCAATCAAG+AGG | - | Chr5:106242271-106242290 | MsG0580030073.01.T01:intron | 45.0% | |
| AATGGAGGCCGTAACAAACA+TGG | - | Chr5:106242103-106242122 | MsG0580030073.01.T01:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | - | Chr5:106242320-106242339 | MsG0580030073.01.T01:intron | 45.0% | |
| CTGGTTAAGGAAGCCAAAAG+AGG | - | Chr5:106241681-106241700 | MsG0580030073.01.T01:intron | 45.0% | |
| CTTTCTCCTTTGCTTGTTCG+CGG | + | Chr5:106241949-106241968 | None:intergenic | 45.0% | |
| GACATTTCGTGAAAACCGCT+TGG | - | Chr5:106240965-106240984 | MsG0580030073.01.T01:intron | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | - | Chr5:106242142-106242161 | MsG0580030073.01.T01:intron | 45.0% | |
| TTCGTGAAAACCGCTTGGAT+TGG | - | Chr5:106240970-106240989 | MsG0580030073.01.T01:intron | 45.0% | |
| TTGTACTCCTAGTTGTGAGG+TGG | + | Chr5:106240845-106240864 | None:intergenic | 45.0% | |
| ! | GAAAACCGCTTGGATTGGAT+CGG | - | Chr5:106240975-106240994 | MsG0580030073.01.T01:intron | 45.0% |
| !! | AGTGCAGGTTGTTTGGGTTT+TGG | - | Chr5:106240723-106240742 | MsG0580030073.01.T01:intron | 45.0% |
| !! | GCTTGGATTGGATCGGTTTT+TGG | - | Chr5:106240982-106241001 | MsG0580030073.01.T01:intron | 45.0% |
| !!! | CAGGTTGTTTGGGTTTTGGA+AGG | - | Chr5:106240727-106240746 | MsG0580030073.01.T01:intron | 45.0% |
| !!! | AAAAAATAGATTTTTTTTAA+AGG | - | Chr5:106241283-106241302 | MsG0580030073.01.T01:intron | 5.0% |
| CTGTGGTAAATGCTGTCCCA+AGG | - | Chr5:106242159-106242178 | MsG0580030073.01.T01:intron | 50.0% | |
| GGGACAGCATTTACCACAGT+TGG | + | Chr5:106242158-106242177 | None:intergenic | 50.0% | |
| ! | GGCCACGACCATGTTTGTTA+CGG | + | Chr5:106242114-106242133 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGAAGGGTCATTG+TGG | - | Chr5:106240737-106240756 | MsG0580030073.01.T01:intron | 50.0% |
| CTTCCTTAACCAGTGTCCCC+GGG | + | Chr5:106241674-106241693 | None:intergenic | 55.0% | |
| GCTTCCTTAACCAGTGTCCC+CGG | + | Chr5:106241675-106241694 | None:intergenic | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | - | Chr5:106242109-106242128 | MsG0580030073.01.T01:intron | 55.0% | |
| GGTCATGTTAACCAGTGCCC+CGG | - | Chr5:106241653-106241672 | MsG0580030073.01.T01:intron | 55.0% | |
| GTCATGTTAACCAGTGCCCC+GGG | - | Chr5:106241654-106241673 | MsG0580030073.01.T01:intron | 55.0% | |
| TAGCTGCCGCGAACAAGCAA+AGG | - | Chr5:106241940-106241959 | MsG0580030073.01.T01:intron | 55.0% | |
| TCATGTTAACCAGTGCCCCG+GGG | - | Chr5:106241655-106241674 | MsG0580030073.01.T01:intron | 55.0% | |
| TTCCTTAACCAGTGTCCCCG+GGG | + | Chr5:106241673-106241692 | None:intergenic | 55.0% | |
| TTGCTTGTTCGCGGCAGCTA+GGG | + | Chr5:106241940-106241959 | None:intergenic | 55.0% | |
| TTTGCTTGTTCGCGGCAGCT+AGG | + | Chr5:106241941-106241960 | None:intergenic | 55.0% | |
| ! | TGCCCCGGGGACACTGGTTA+AGG | - | Chr5:106241668-106241687 | MsG0580030073.01.T01:intron | 65.0% |
| AACCAGTGCCCCGGGGACAC+TGG | - | Chr5:106241662-106241681 | MsG0580030073.01.T01:intron | 70.0% | |
| AACCAGTGTCCCCGGGGCAC+TGG | + | Chr5:106241667-106241686 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 106240660 | 106242504 | 106240660 | ID=MsG0580030073.01;Name=MsG0580030073.01 |
| Chr5 | mRNA | 106240660 | 106242504 | 106240660 | ID=MsG0580030073.01.T01;Parent=MsG0580030073.01;Name=MsG0580030073.01.T01;_AED=0.67;_eAED=0.74;_QI=0|0.33|0.5|0.75|0.66|0.75|4|0|119 |
| Chr5 | exon | 106242373 | 106242504 | 106242373 | ID=MsG0580030073.01.T01:exon:17181;Parent=MsG0580030073.01.T01 |
| Chr5 | exon | 106240984 | 106241076 | 106240984 | ID=MsG0580030073.01.T01:exon:17180;Parent=MsG0580030073.01.T01 |
| Chr5 | exon | 106240804 | 106240888 | 106240804 | ID=MsG0580030073.01.T01:exon:17179;Parent=MsG0580030073.01.T01 |
| Chr5 | exon | 106240660 | 106240709 | 106240660 | ID=MsG0580030073.01.T01:exon:17178;Parent=MsG0580030073.01.T01 |
| Chr5 | CDS | 106242373 | 106242504 | 106242373 | ID=MsG0580030073.01.T01:cds;Parent=MsG0580030073.01.T01 |
| Chr5 | CDS | 106240984 | 106241076 | 106240984 | ID=MsG0580030073.01.T01:cds;Parent=MsG0580030073.01.T01 |
| Chr5 | CDS | 106240804 | 106240888 | 106240804 | ID=MsG0580030073.01.T01:cds;Parent=MsG0580030073.01.T01 |
| Chr5 | CDS | 106240660 | 106240709 | 106240660 | ID=MsG0580030073.01.T01:cds;Parent=MsG0580030073.01.T01 |
| Gene Sequence |
| Protein sequence |
