AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015494.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015494.01.T01 MTR_3g070930 82.237 152 20 2 1 151 62 207 6.47e-64 198
MsG0380015494.01.T01 MTR_2g086500 80.921 152 22 2 1 151 62 207 1.03e-62 195
MsG0380015494.01.T01 MTR_5g012930 80.921 152 22 2 1 151 62 207 1.35e-62 194
MsG0380015494.01.T01 MTR_3g070930 98.113 53 1 0 1 53 62 114 5.59e-29 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015494.01.T01 AT1G08360 76.316 152 29 2 1 151 62 207 2.09e-59 186
MsG0380015494.01.T01 AT5G22440 77.632 152 27 2 1 151 63 208 3.60e-59 186
MsG0380015494.01.T01 AT5G22440 77.632 152 27 2 1 151 63 208 3.60e-59 186
MsG0380015494.01.T01 AT2G27530 75.000 152 31 2 1 151 62 207 7.81e-58 182
MsG0380015494.01.T01 AT2G27530 75.000 152 31 2 1 151 62 207 7.81e-58 182

Find 51 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCCCTCAAGAGATTCT+TGG 0.221837 3:-70963613 None:intergenic
GAGACCATTGAACTTCAAAT+TGG 0.290529 3:+70960877 MsG0380015494.01.T01:five_prime_UTR
TAAGAAAGCATGGTACTTCT+TGG 0.344589 3:-70962958 None:intergenic
TTGTGCAACGATGAAATAAA+AGG 0.385439 3:-70963803 None:intergenic
GAGACCAATTTGAAGTTCAA+TGG 0.404007 3:-70960881 None:intergenic
AGCATACAAAGCTTCATCTT+AGG 0.414122 3:-70960968 None:intergenic
GAAGATAGGTTTGGAATCAA+TGG 0.426241 3:+70962881 MsG0380015494.01.T01:CDS
GCAGGCAGAGAAGATAGGTT+TGG 0.444089 3:+70962872 MsG0380015494.01.T01:intron
GCTTCTGCTACAGAGCAAAA+TGG 0.454827 3:-70960618 None:intergenic
CTCTGCATGGGAGTAGCTGT+GGG 0.459921 3:+70963680 MsG0380015494.01.T01:CDS
AACTCCTTCCTCTGCCGCTA+GGG 0.461087 3:+70960578 MsG0380015494.01.T01:five_prime_UTR
ATATACCTCTTCGACGTGTT+GGG 0.467119 3:-70960999 None:intergenic
TATATACCTCTTCGACGTGT+TGG 0.467153 3:-70961000 None:intergenic
AGACAAAACCCTAGCGGCAG+AGG 0.470680 3:-70960586 None:intergenic
AATTTGCAGGCAGAGAAGAT+AGG 0.475004 3:+70962867 MsG0380015494.01.T01:intron
AAACTCCTTCCTCTGCCGCT+AGG 0.485856 3:+70960577 MsG0380015494.01.T01:five_prime_UTR
GCTTGTATCTGAAGAGTTCA+AGG 0.498695 3:+70964278 MsG0380015494.01.T01:CDS
GACCTCAAATTAGGGATAAG+TGG 0.501501 3:+70964032 MsG0380015494.01.T01:intron
GCTCTGCATGGGAGTAGCTG+TGG 0.501869 3:+70963679 MsG0380015494.01.T01:CDS
CCAAGAATCTCTTGAGGGAA+AGG 0.504153 3:+70963613 MsG0380015494.01.T01:CDS
CATCTTAGGACGAGGATATG+AGG 0.509007 3:-70960954 None:intergenic
AGAAGCAATCTCAGGAATCA+TGG 0.510750 3:+70960823 MsG0380015494.01.T01:five_prime_UTR
TATTCGGACAAATGTATTGA+AGG 0.516581 3:-70964371 None:intergenic
CCATGCTTTCTTAGCTTCTG+AGG 0.517384 3:+70962968 MsG0380015494.01.T01:CDS
GCAGTGAGAGAAGCAATCTC+AGG 0.522147 3:+70960815 MsG0380015494.01.T01:five_prime_UTR
CATGCTTTCTTAGCTTCTGA+GGG 0.523655 3:+70962969 MsG0380015494.01.T01:CDS
AAGATGAAGCTTTGTATGCT+CGG 0.532764 3:+70960971 MsG0380015494.01.T01:exon
TCTTGGTGAGAGACAAGTGT+TGG 0.535756 3:-70963596 None:intergenic
GGTGAAATTTCAGCTAAAGA+AGG 0.544360 3:+70963655 MsG0380015494.01.T01:CDS
GAGGATATGAGGCAACTTGA+CGG 0.545054 3:-70960943 None:intergenic
GCTAAAGAAGGTGCTCTGCA+TGG 0.545816 3:+70963667 MsG0380015494.01.T01:CDS
CTAAAGAAGGTGCTCTGCAT+GGG 0.546643 3:+70963668 MsG0380015494.01.T01:CDS
CTTGGTGAGAGACAAGTGTT+GGG 0.551609 3:-70963595 None:intergenic
TCTCACCAAGAATCTCTTGA+GGG 0.555778 3:+70963608 MsG0380015494.01.T01:CDS
TGAAGTGGTGAATGTGGAAT+GGG 0.558729 3:-70960544 None:intergenic
CTTGAATGAAGTGGTGAATG+TGG 0.564577 3:-70960550 None:intergenic
GCCACAGATTCAACAAAATG+AGG 0.567550 3:+70960639 MsG0380015494.01.T01:five_prime_UTR
CAAAGCTTCATCTTAGGACG+AGG 0.567957 3:-70960962 None:intergenic
AGTTTATAGCTTGAATGAAG+TGG 0.569033 3:-70960559 None:intergenic
GGTCAATGAGACAAAGGCTA+TGG 0.576127 3:+70963634 MsG0380015494.01.T01:CDS
AAAACCCTAGCGGCAGAGGA+AGG 0.578790 3:-70960582 None:intergenic
TTGTAGTAAGCTTCAAAGTG+AGG 0.594735 3:+70960793 MsG0380015494.01.T01:intron
ATGAAGTGGTGAATGTGGAA+TGG 0.598234 3:-70960545 None:intergenic
CCTCAGAAGCTAAGAAAGCA+TGG 0.602000 3:-70962968 None:intergenic
AGCTGTGGGCAATGTTAGCA+TGG 0.607215 3:+70963694 MsG0380015494.01.T01:CDS
AGATGCCCAACACGTCGAAG+AGG 0.614877 3:+70960994 MsG0380015494.01.T01:CDS
CTCTCACCAAGAATCTCTTG+AGG 0.617687 3:+70963607 MsG0380015494.01.T01:CDS
ACAAAAGATAAGCGTTTCAG+TGG 0.624979 3:+70960918 MsG0380015494.01.T01:five_prime_UTR
GGGAAAGGTCAATGAGACAA+AGG 0.641581 3:+70963628 MsG0380015494.01.T01:CDS
AATAGTTCCCTTAAAAGACA+CGG 0.676062 3:-70964310 None:intergenic
GAGCAGAGACAAAACCCTAG+CGG 0.733891 3:-70960592 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAAAAATATGAGA+TGG - Chr3:70962214-70962233 None:intergenic 15.0%
!! ATTTCAGAATTCAAAAATTA+TGG + Chr3:70963525-70963544 MsG0380015494.01.T01:CDS 15.0%
!! CATTAACAAAATACATTAAA+TGG - Chr3:70961057-70961076 None:intergenic 15.0%
!! CTTAAATATTGAAAAATGAA+AGG - Chr3:70964337-70964356 None:intergenic 15.0%
!!! AATTTTTTAACACTGATTTA+CGG + Chr3:70964138-70964157 MsG0380015494.01.T01:intron 15.0%
!!! AGATTCATTTATAGATTTTT+AGG - Chr3:70963419-70963438 None:intergenic 15.0%
!! AAAAGAAATGAGATATCAAT+TGG - Chr3:70961414-70961433 None:intergenic 20.0%
!! AAGTTGTATTGAAAATGAAA+TGG - Chr3:70963247-70963266 None:intergenic 20.0%
!! AATAAATATACCTTTCAAAC+AGG - Chr3:70963492-70963511 None:intergenic 20.0%
!! AATGTAATATTCTATCTCAT+TGG - Chr3:70961440-70961459 None:intergenic 20.0%
!! AGTGTTAAAAAATTTCAACT+AGG - Chr3:70964132-70964151 None:intergenic 20.0%
!! AGTTGTATTGAAAATGAAAT+GGG - Chr3:70963246-70963265 None:intergenic 20.0%
!! ATTAGTGTTCATATTGTATT+GGG - Chr3:70963278-70963297 None:intergenic 20.0%
!! CAGATAGAATTTATCTATAT+AGG - Chr3:70961470-70961489 None:intergenic 20.0%
!! GAAGAAACAACAAAAAAAAT+GGG - Chr3:70964183-70964202 None:intergenic 20.0%
!! GTACAATATATATCAATCAA+TGG - Chr3:70961645-70961664 None:intergenic 20.0%
!! GTGATTTCGTATATTTAAAA+TGG + Chr3:70962692-70962711 MsG0380015494.01.T01:intron 20.0%
!! GTGTTAAAAAATTTCAACTA+GGG - Chr3:70964131-70964150 None:intergenic 20.0%
!! TATTAGTGTTCATATTGTAT+TGG - Chr3:70963279-70963298 None:intergenic 20.0%
!! TGAAGAAACAACAAAAAAAA+TGG - Chr3:70964184-70964203 None:intergenic 20.0%
!! TGTAAAATCCTAGTATAAAT+CGG + Chr3:70961488-70961507 MsG0380015494.01.T01:intron 20.0%
!!! ATTAAGAAAGTGTAAAATCA+GGG - Chr3:70963341-70963360 None:intergenic 20.0%
!!! ATTTTTTAACACTGATTTAC+GGG + Chr3:70964139-70964158 MsG0380015494.01.T01:intron 20.0%
!!! CGTATATTTAAAATGGATAA+TGG + Chr3:70962699-70962718 MsG0380015494.01.T01:intron 20.0%
!!! CTAAGTTTTTACTGTTTTAA+GGG + Chr3:70961304-70961323 MsG0380015494.01.T01:intron 20.0%
!!! TCTAAGTTTTTACTGTTTTA+AGG + Chr3:70961303-70961322 MsG0380015494.01.T01:intron 20.0%
!!! TGACCATTTTCTAAAAAAAA+GGG + Chr3:70963203-70963222 MsG0380015494.01.T01:intron 20.0%
!!! TTACAATGTTTTCAGAAAAA+CGG + Chr3:70962097-70962116 MsG0380015494.01.T01:intron 20.0%
!!! TTTAGGTTTTACGTTATTTA+CGG + Chr3:70963058-70963077 MsG0380015494.01.T01:intron 20.0%
!!! TTTAGTTTTGCAAATTTTGT+TGG + Chr3:70962535-70962554 MsG0380015494.01.T01:intron 20.0%
!!! TTTTTCTGAAAACATTGTAA+AGG - Chr3:70962097-70962116 None:intergenic 20.0%
! AAAAAATGTGACCTCAAATT+AGG + Chr3:70964023-70964042 MsG0380015494.01.T01:intron 25.0%
! AAAAATGTGACCTCAAATTA+GGG + Chr3:70964024-70964043 MsG0380015494.01.T01:intron 25.0%
! AAACAAACACTCTTTAAGTA+CGG - Chr3:70961963-70961982 None:intergenic 25.0%
! AAAGTGGAATTATTGTTATG+GGG - Chr3:70963317-70963336 None:intergenic 25.0%
! AAGAACAATGATAAGATCTA+CGG - Chr3:70961029-70961048 None:intergenic 25.0%
! AAGATTAAACACAAATGACT+AGG - Chr3:70962840-70962859 None:intergenic 25.0%
! AATTCAAGGAAAGGAAATAA+AGG - Chr3:70963987-70964006 None:intergenic 25.0%
! ACTACATTGTCATCATAAAA+AGG + Chr3:70961545-70961564 MsG0380015494.01.T01:intron 25.0%
! ATAACAAAGGAAAATCAGAT+GGG - Chr3:70961893-70961912 None:intergenic 25.0%
! ATATATCAATCAATGGCATT+GGG - Chr3:70961638-70961657 None:intergenic 25.0%
! ATCACTCATAAACATAACAA+AGG - Chr3:70961906-70961925 None:intergenic 25.0%
! CAAAATTTGCAAAACTAAAC+TGG - Chr3:70962534-70962553 None:intergenic 25.0%
! CAATTCTTGAATGAAATACT+TGG - Chr3:70963469-70963488 None:intergenic 25.0%
! CTGTTTATGAATATTCGATT+AGG + Chr3:70962435-70962454 MsG0380015494.01.T01:intron 25.0%
! GAAAGTGGAATTATTGTTAT+GGG - Chr3:70963318-70963337 None:intergenic 25.0%
! GCTTAACAAAAATAAGAAGT+TGG + Chr3:70962923-70962942 MsG0380015494.01.T01:CDS 25.0%
! TATATATCAATCAATGGCAT+TGG - Chr3:70961639-70961658 None:intergenic 25.0%
! TATCACAAGTTCAAATATCA+TGG + Chr3:70962467-70962486 MsG0380015494.01.T01:intron 25.0%
! TCGAATATTCATAAACAGTT+TGG - Chr3:70962433-70962452 None:intergenic 25.0%
! TGGAAGTTAAAACAAAGATA+AGG - Chr3:70962514-70962533 None:intergenic 25.0%
!! AATGAAATGGGTCATTATTT+TGG - Chr3:70963234-70963253 None:intergenic 25.0%
!! ATAACTTGCACAAAAAAGAA+AGG - Chr3:70963857-70963876 None:intergenic 25.0%
!! ATCAGAAAGCATAAATTAGA+TGG - Chr3:70960693-70960712 None:intergenic 25.0%
!! ATGAAATGGGTCATTATTTT+GGG - Chr3:70963233-70963252 None:intergenic 25.0%
!! ATGTTTTGCATTACTTTACA+GGG + Chr3:70963567-70963586 MsG0380015494.01.T01:CDS 25.0%
!! ATTTTTGTTAAGCTTCTTCA+AGG - Chr3:70962916-70962935 None:intergenic 25.0%
!! GAAGTTTTTATCAAGCTATT+CGG - Chr3:70964390-70964409 None:intergenic 25.0%
!! GATTAAGAAAGTGTAAAATC+AGG - Chr3:70963342-70963361 None:intergenic 25.0%
!! GATTTTACACTTTCTTAATC+TGG + Chr3:70963342-70963361 MsG0380015494.01.T01:intron 25.0%
!! GGAAATATGAATCGATTTAT+TGG - Chr3:70960672-70960691 None:intergenic 25.0%
!! TATGTTTTGCATTACTTTAC+AGG + Chr3:70963566-70963585 MsG0380015494.01.T01:CDS 25.0%
!! TTAAGAAAGTGTAAAATCAG+GGG - Chr3:70963340-70963359 None:intergenic 25.0%
!! TTAATTGCTTGTCTAGAATT+TGG - Chr3:70962246-70962265 None:intergenic 25.0%
!!! CTGACCATTTTCTAAAAAAA+AGG + Chr3:70963202-70963221 MsG0380015494.01.T01:intron 25.0%
!!! TACTTAAAGAGTGTTTGTTT+TGG + Chr3:70961963-70961982 MsG0380015494.01.T01:intron 25.0%
!!! TGTTTTTGTTTTTGTTGGTT+TGG - Chr3:70961689-70961708 None:intergenic 25.0%
AAAATCCTAGTATAAATCGG+TGG + Chr3:70961491-70961510 MsG0380015494.01.T01:intron 30.0%
AAATGGTCAGTTATTCCAAA+CGG - Chr3:70963192-70963211 None:intergenic 30.0%
AATAGTTCCCTTAAAAGACA+CGG - Chr3:70964313-70964332 None:intergenic 30.0%
ACAGATATTACAGCAATTCA+AGG - Chr3:70964001-70964020 None:intergenic 30.0%
AGTTTATAGCTTGAATGAAG+TGG - Chr3:70960562-70960581 None:intergenic 30.0%
ATGAATATTCGATTAGGTGT+TGG + Chr3:70962441-70962460 MsG0380015494.01.T01:intron 30.0%
ATGAGATGGAATTAGTAGTA+TGG - Chr3:70962200-70962219 None:intergenic 30.0%
CATAACAAAGGAAAATCAGA+TGG - Chr3:70961894-70961913 None:intergenic 30.0%
CATATTGTACAAATTCAGAG+TGG - Chr3:70962317-70962336 None:intergenic 30.0%
GGAAAGTGGAATTATTGTTA+TGG - Chr3:70963319-70963338 None:intergenic 30.0%
TAATTGTGTAATCACTGTTC+AGG + Chr3:70962625-70962644 MsG0380015494.01.T01:intron 30.0%
TATTACAGCAATTCAAGGAA+AGG - Chr3:70963996-70964015 None:intergenic 30.0%
TATTCGGACAAATGTATTGA+AGG - Chr3:70964374-70964393 None:intergenic 30.0%
TCTTGCAACATTCAATAAGA+CGG - Chr3:70961379-70961398 None:intergenic 30.0%
TGAATATTCGATTAGGTGTT+GGG + Chr3:70962442-70962461 MsG0380015494.01.T01:intron 30.0%
TTACGCTACATAGATATATC+TGG + Chr3:70961217-70961236 MsG0380015494.01.T01:intron 30.0%
TTGTGCAACGATGAAATAAA+AGG - Chr3:70963806-70963825 None:intergenic 30.0%
TTGTTCTCTTCTTGAAGATT+CGG + Chr3:70962016-70962035 MsG0380015494.01.T01:intron 30.0%
! AAATCTTACCGTGTCTTTTA+AGG + Chr3:70964302-70964321 MsG0380015494.01.T01:CDS 30.0%
! AATCTTACCGTGTCTTTTAA+GGG + Chr3:70964303-70964322 MsG0380015494.01.T01:CDS 30.0%
! AATGTTTTCAGAAAAACGGT+GGG + Chr3:70962101-70962120 MsG0380015494.01.T01:intron 30.0%
! TCATCTTGTTACAATTTTGC+TGG + Chr3:70964408-70964427 MsG0380015494.01.T01:three_prime_UTR 30.0%
! TTCCACTATCCTTTTGTTAA+GGG + Chr3:70961254-70961273 MsG0380015494.01.T01:intron 30.0%
!! TCTGATTGATTTGTGTTTGA+TGG + Chr3:70960768-70960787 MsG0380015494.01.T01:intron 30.0%
!! TGTTGTTTCTTCAATATCCT+AGG + Chr3:70964191-70964210 MsG0380015494.01.T01:intron 30.0%
!!! GGACCCTTTTTTTTAGAAAA+TGG - Chr3:70963209-70963228 None:intergenic 30.0%
!!! GTTGGTGTTTTTGTTTTTGT+TGG - Chr3:70961694-70961713 None:intergenic 30.0%
AACCAAACCCTTAGATGAAA+AGG - Chr3:70961748-70961767 None:intergenic 35.0%
AACCACTTATCCCTAATTTG+AGG - Chr3:70964037-70964056 None:intergenic 35.0%
AATAAAGGAAACATGTGTGG+CGG - Chr3:70963972-70963991 None:intergenic 35.0%
AATCTTTCACTCCAATTTGC+AGG + Chr3:70962854-70962873 MsG0380015494.01.T01:intron 35.0%
ACAAAAGATAAGCGTTTCAG+TGG + Chr3:70960918-70960937 MsG0380015494.01.T01:five_prime_UTR 35.0%
ACAAATGACTAGGCAAAAAC+TGG - Chr3:70962830-70962849 None:intergenic 35.0%
ACCAAACCCTTAGATGAAAA+GGG - Chr3:70961747-70961766 None:intergenic 35.0%
ACCAAAGTAGGTCAATATAC+CGG + Chr3:70963371-70963390 MsG0380015494.01.T01:intron 35.0%
AGAAAACCCAATTCAACAGA+AGG - Chr3:70961826-70961845 None:intergenic 35.0%
AGCATACAAAGCTTCATCTT+AGG - Chr3:70960971-70960990 None:intergenic 35.0%
ATCCCTTAACAAAAGGATAG+TGG - Chr3:70961259-70961278 None:intergenic 35.0%
ATGATTTCTTTGATGCCCTT+CGG + Chr3:70963885-70963904 MsG0380015494.01.T01:intron 35.0%
CAAAAAAAACTCAGCATCTG+TGG - Chr3:70962172-70962191 None:intergenic 35.0%
CAATCAGACTGAATATTCCT+AGG - Chr3:70964211-70964230 None:intergenic 35.0%
CAATTGCATCCCTTAACAAA+AGG - Chr3:70961266-70961285 None:intergenic 35.0%
CTTGCAACATTCAATAAGAC+GGG - Chr3:70961378-70961397 None:intergenic 35.0%
GAAAACCCAATTCAACAGAA+GGG - Chr3:70961825-70961844 None:intergenic 35.0%
GAGACCATTGAACTTCAAAT+TGG + Chr3:70960877-70960896 MsG0380015494.01.T01:five_prime_UTR 35.0%
GGAAATAAAGGAAACATGTG+TGG - Chr3:70963975-70963994 None:intergenic 35.0%
GGTGAAATTTCAGCTAAAGA+AGG + Chr3:70963655-70963674 MsG0380015494.01.T01:CDS 35.0%
GTTTGTGATTTAGAGGAAAG+TGG - Chr3:70961667-70961686 None:intergenic 35.0%
TCAAGAATTGCCTGTTTGAA+AGG + Chr3:70963479-70963498 MsG0380015494.01.T01:intron 35.0%
TCTCCTTGTTGAAAAAGAAC+TGG + Chr3:70963765-70963784 MsG0380015494.01.T01:CDS 35.0%
TTGTAGTAAGCTTCAAAGTG+AGG + Chr3:70960793-70960812 MsG0380015494.01.T01:intron 35.0%
! AAGATGAAGCTTTGTATGCT+CGG + Chr3:70960971-70960990 MsG0380015494.01.T01:exon 35.0%
! ACCTCATTTTGTTGAATCTG+TGG - Chr3:70960643-70960662 None:intergenic 35.0%
! ACTGAAACGCTTATCTTTTG+TGG - Chr3:70960919-70960938 None:intergenic 35.0%
! CAATGTTTTCAGAAAAACGG+TGG + Chr3:70962100-70962119 MsG0380015494.01.T01:intron 35.0%
! CTGAAACGCTTATCTTTTGT+GGG - Chr3:70960918-70960937 None:intergenic 35.0%
! CTTCCACTATCCTTTTGTTA+AGG + Chr3:70961253-70961272 MsG0380015494.01.T01:intron 35.0%
! GAAGATAGGTTTGGAATCAA+TGG + Chr3:70962881-70962900 MsG0380015494.01.T01:CDS 35.0%
! GAGACCAATTTGAAGTTCAA+TGG - Chr3:70960884-70960903 None:intergenic 35.0%
! GTCTTATTGAATGTTGCAAG+AGG + Chr3:70961378-70961397 MsG0380015494.01.T01:intron 35.0%
! TAAACAATTCCCCGTCTTTT+GGG + Chr3:70962999-70963018 MsG0380015494.01.T01:intron 35.0%
! TAAGAAAGCATGGTACTTCT+TGG - Chr3:70962961-70962980 None:intergenic 35.0%
! TATTAAAGTACTCCTCCGTT+TGG + Chr3:70963174-70963193 MsG0380015494.01.T01:intron 35.0%
! TTAAACAATTCCCCGTCTTT+TGG + Chr3:70962998-70963017 MsG0380015494.01.T01:intron 35.0%
!! ACGGTGGGTTTGTTATAATT+AGG + Chr3:70962116-70962135 MsG0380015494.01.T01:intron 35.0%
!! CATAACCTACTGTTGATTTC+AGG + Chr3:70964249-70964268 MsG0380015494.01.T01:intron 35.0%
!! GGTTTGTTATAATTAGGCAG+CGG + Chr3:70962122-70962141 MsG0380015494.01.T01:intron 35.0%
!! TGGTTTGGTTTGTGATTTAG+AGG - Chr3:70961674-70961693 None:intergenic 35.0%
!! TTCAGGAAAGTGTTGTCATT+AGG + Chr3:70962642-70962661 MsG0380015494.01.T01:intron 35.0%
!! TTCATCTAAGGGTTTGGTTT+TGG + Chr3:70961749-70961768 MsG0380015494.01.T01:intron 35.0%
!!! AAATGGGTCATTATTTTGGG+TGG - Chr3:70963230-70963249 None:intergenic 35.0%
!!! TCTTTTTCAACAAGGAGACA+AGG - Chr3:70963763-70963782 None:intergenic 35.0%
AACGTCCCTTCTGTTGAATT+GGG + Chr3:70961817-70961836 MsG0380015494.01.T01:intron 40.0%
AATTTGCAGGCAGAGAAGAT+AGG + Chr3:70962867-70962886 MsG0380015494.01.T01:intron 40.0%
ACAAGAAGCTCAGATCTTGA+AGG + Chr3:70961712-70961731 MsG0380015494.01.T01:intron 40.0%
AGAAGCAATCTCAGGAATCA+TGG + Chr3:70960823-70960842 MsG0380015494.01.T01:five_prime_UTR 40.0%
AGTGTAAAATCAGGGGAAAG+TGG - Chr3:70963333-70963352 None:intergenic 40.0%
ATATACCTCTTCGACGTGTT+GGG - Chr3:70961002-70961021 None:intergenic 40.0%
ATCTGGTGAACAACCAAAGT+AGG + Chr3:70963359-70963378 MsG0380015494.01.T01:intron 40.0%
ATGACTAGGCAAAAACTGGA+AGG - Chr3:70962826-70962845 None:intergenic 40.0%
CACTGATCCAATTTCTGATG+GGG + Chr3:70961986-70962005 MsG0380015494.01.T01:intron 40.0%
CATGCTTTCTTAGCTTCTGA+GGG + Chr3:70962969-70962988 MsG0380015494.01.T01:CDS 40.0%
CCAAAGTAGGTCAATATACC+GGG + Chr3:70963372-70963391 MsG0380015494.01.T01:intron 40.0%
CTTGAATGAAGTGGTGAATG+TGG - Chr3:70960553-70960572 None:intergenic 40.0%
GACCTCAAATTAGGGATAAG+TGG + Chr3:70964032-70964051 MsG0380015494.01.T01:intron 40.0%
GCATGTGTTTCTCTTGGTTT+AGG + Chr3:70963041-70963060 MsG0380015494.01.T01:intron 40.0%
GCCACAGATTCAACAAAATG+AGG + Chr3:70960639-70960658 MsG0380015494.01.T01:five_prime_UTR 40.0%
GCTTGTATCTGAAGAGTTCA+AGG + Chr3:70964278-70964297 MsG0380015494.01.T01:CDS 40.0%
TAACGTCCCTTCTGTTGAAT+TGG + Chr3:70961816-70961835 MsG0380015494.01.T01:intron 40.0%
TATATACCTCTTCGACGTGT+TGG - Chr3:70961003-70961022 None:intergenic 40.0%
TATCTTCTCTGCCTGCAAAT+TGG - Chr3:70962868-70962887 None:intergenic 40.0%
TCAAGATCTGAGCTTCTTGT+TGG - Chr3:70961712-70961731 None:intergenic 40.0%
TCTCACCAAGAATCTCTTGA+GGG + Chr3:70963608-70963627 MsG0380015494.01.T01:CDS 40.0%
TGACAATACGTTACGACAGT+AGG + Chr3:70962753-70962772 MsG0380015494.01.T01:intron 40.0%
TGTGTTTCCCCATCAGAAAT+TGG - Chr3:70961996-70962015 None:intergenic 40.0%
! GCACTGATCCAATTTCTGAT+GGG + Chr3:70961985-70962004 MsG0380015494.01.T01:intron 40.0%
!! ACAAAAGGATAGTGGAAGCA+TGG - Chr3:70961251-70961270 None:intergenic 40.0%
!! CCTACTGTTGATTTCAGGTT+CGG + Chr3:70964254-70964273 MsG0380015494.01.T01:intron 40.0%
!! GGAAAGTGTTGTCATTAGGT+AGG + Chr3:70962646-70962665 MsG0380015494.01.T01:intron 40.0%
!! TAGCACCACCGATTTATACT+AGG - Chr3:70961499-70961518 None:intergenic 40.0%
!!! CTGCCAGTTCTTTTTCAACA+AGG - Chr3:70963771-70963790 None:intergenic 40.0%
AAGGAAAATCAGATGGGAGC+AGG - Chr3:70961887-70961906 None:intergenic 45.0%
AGGAAAATCAGATGGGAGCA+GGG - Chr3:70961886-70961905 None:intergenic 45.0%
AGTAGGTCAATATACCGGGA+CGG + Chr3:70963376-70963395 MsG0380015494.01.T01:intron 45.0%
CAAAGCTTCATCTTAGGACG+AGG - Chr3:70960965-70960984 None:intergenic 45.0%
CATCTTAGGACGAGGATATG+AGG - Chr3:70960957-70960976 None:intergenic 45.0%
CATGCTAGCATTTCACCGAA+GGG - Chr3:70963903-70963922 None:intergenic 45.0%
CCAAGAATCTCTTGAGGGAA+AGG + Chr3:70963613-70963632 MsG0380015494.01.T01:CDS 45.0%
CCATGCTTTCTTAGCTTCTG+AGG + Chr3:70962968-70962987 MsG0380015494.01.T01:CDS 45.0%
CCCGGTATATTGACCTACTT+TGG - Chr3:70963375-70963394 None:intergenic 45.0%
CCGAACCTGAAATCAACAGT+AGG - Chr3:70964257-70964276 None:intergenic 45.0%
CCTCAGAAGCTAAGAAAGCA+TGG - Chr3:70962971-70962990 None:intergenic 45.0%
CCTTAGATGAAAAGGGCTTG+CGG - Chr3:70961740-70961759 None:intergenic 45.0%
CCTTTCCCTCAAGAGATTCT+TGG - Chr3:70963616-70963635 None:intergenic 45.0%
CTCTCACCAAGAATCTCTTG+AGG + Chr3:70963607-70963626 MsG0380015494.01.T01:CDS 45.0%
CTTGGTGAGAGACAAGTGTT+GGG - Chr3:70963598-70963617 None:intergenic 45.0%
GAGGATATGAGGCAACTTGA+CGG - Chr3:70960946-70960965 None:intergenic 45.0%
GCTTCTGCTACAGAGCAAAA+TGG - Chr3:70960621-70960640 None:intergenic 45.0%
GGCTAGACAAACTGTAGAGA+TGG + Chr3:70962143-70962162 MsG0380015494.01.T01:intron 45.0%
GGGAAAGGTCAATGAGACAA+AGG + Chr3:70963628-70963647 MsG0380015494.01.T01:CDS 45.0%
GGTCAATGAGACAAAGGCTA+TGG + Chr3:70963634-70963653 MsG0380015494.01.T01:CDS 45.0%
TCATGCTAGCATTTCACCGA+AGG - Chr3:70963904-70963923 None:intergenic 45.0%
TCTTGGTGAGAGACAAGTGT+TGG - Chr3:70963599-70963618 None:intergenic 45.0%
TGGTCAGTTATTCCAAACGG+AGG - Chr3:70963189-70963208 None:intergenic 45.0%
TTAGGTAGGTTCAACAACGC+TGG + Chr3:70962660-70962679 MsG0380015494.01.T01:intron 45.0%
TTGAGACAGGACCCAAAAGA+CGG - Chr3:70963013-70963032 None:intergenic 45.0%
! CGCAAGCCCTTTTCATCTAA+GGG + Chr3:70961738-70961757 MsG0380015494.01.T01:intron 45.0%
! CGGATGAAAGAAAGCATGTC+AGG - Chr3:70963952-70963971 None:intergenic 45.0%
! GCCCTTTTCATCTAAGGGTT+TGG + Chr3:70961743-70961762 MsG0380015494.01.T01:intron 45.0%
!! CTAAAGAAGGTGCTCTGCAT+GGG + Chr3:70963668-70963687 MsG0380015494.01.T01:CDS 45.0%
!! GGCACTGATCCAATTTCTGA+TGG + Chr3:70961984-70962003 MsG0380015494.01.T01:intron 45.0%
!! TTTTGGGTCCTGTCTCAACA+AGG + Chr3:70963015-70963034 MsG0380015494.01.T01:intron 45.0%
AGCTGTGGGCAATGTTAGCA+TGG + Chr3:70963694-70963713 MsG0380015494.01.T01:CDS 50.0%
AGGCAGGCATGTGTTTCTCT+TGG + Chr3:70963035-70963054 MsG0380015494.01.T01:intron 50.0%
GAGCAGAGACAAAACCCTAG+CGG - Chr3:70960595-70960614 None:intergenic 50.0%
GCAGGCAGAGAAGATAGGTT+TGG + Chr3:70962872-70962891 MsG0380015494.01.T01:intron 50.0%
GCAGTGAGAGAAGCAATCTC+AGG + Chr3:70960815-70960834 MsG0380015494.01.T01:five_prime_UTR 50.0%
GGCAGTGATTGGAATGAGAG+AGG + Chr3:70961597-70961616 MsG0380015494.01.T01:intron 50.0%
TGAGACAGGACCCAAAAGAC+GGG - Chr3:70963012-70963031 None:intergenic 50.0%
! AGTTTTGCTGAGCTGAGAGC+AGG + Chr3:70961575-70961594 MsG0380015494.01.T01:intron 50.0%
! CCGCAAGCCCTTTTCATCTA+AGG + Chr3:70961737-70961756 MsG0380015494.01.T01:intron 50.0%
! GTTTTGCTGAGCTGAGAGCA+GGG + Chr3:70961576-70961595 MsG0380015494.01.T01:intron 50.0%
!! GCTAAAGAAGGTGCTCTGCA+TGG + Chr3:70963667-70963686 MsG0380015494.01.T01:CDS 50.0%
AAAACCCTAGCGGCAGAGGA+AGG - Chr3:70960585-70960604 None:intergenic 55.0%
AAACTCCTTCCTCTGCCGCT+AGG + Chr3:70960577-70960596 MsG0380015494.01.T01:five_prime_UTR 55.0%
AACTCCTTCCTCTGCCGCTA+GGG + Chr3:70960578-70960597 MsG0380015494.01.T01:five_prime_UTR 55.0%
AGACAAAACCCTAGCGGCAG+AGG - Chr3:70960589-70960608 None:intergenic 55.0%
AGATGCCCAACACGTCGAAG+AGG + Chr3:70960994-70961013 MsG0380015494.01.T01:CDS 55.0%
CAATATACCGGGACGGAGAG+AGG + Chr3:70963383-70963402 MsG0380015494.01.T01:intron 55.0%
CTCTGCATGGGAGTAGCTGT+GGG + Chr3:70963680-70963699 MsG0380015494.01.T01:CDS 55.0%
GAATGAGAGAGGCCTCGAGT+GGG + Chr3:70961608-70961627 MsG0380015494.01.T01:intron 55.0%
GAGACAGGACCCAAAAGACG+GGG - Chr3:70963011-70963030 None:intergenic 55.0%
GCATTGGGTATTCCCACTCG+AGG - Chr3:70961623-70961642 None:intergenic 55.0%
! CATGCCTGCCTTGTTGAGAC+AGG - Chr3:70963026-70963045 None:intergenic 55.0%
CTACTCTCCTCTCTCCGTCC+CGG - Chr3:70963393-70963412 None:intergenic 60.0%
GCTCTGCATGGGAGTAGCTG+TGG + Chr3:70963679-70963698 MsG0380015494.01.T01:CDS 60.0%
GCTGAGAGCAGGGCAGTGAT+TGG + Chr3:70961586-70961605 MsG0380015494.01.T01:intron 60.0%
GGAATGAGAGAGGCCTCGAG+TGG + Chr3:70961607-70961626 MsG0380015494.01.T01:intron 60.0%
GGGTCCTGTCTCAACAAGGC+AGG + Chr3:70963019-70963038 MsG0380015494.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70960547 70964494 70960547 ID=MsG0380015494.01;Name=MsG0380015494.01
Chr3 mRNA 70960547 70964494 70960547 ID=MsG0380015494.01.T01;Parent=MsG0380015494.01;Name=MsG0380015494.01.T01;_AED=0.35;_eAED=0.45;_QI=289|0.4|0.5|1|0.2|0.16|6|135|228
Chr3 exon 70960547 70960660 70960547 ID=MsG0380015494.01.T01:exon:23707;Parent=MsG0380015494.01.T01
Chr3 exon 70960799 70961015 70960799 ID=MsG0380015494.01.T01:exon:23708;Parent=MsG0380015494.01.T01
Chr3 exon 70962876 70962993 70962876 ID=MsG0380015494.01.T01:exon:23709;Parent=MsG0380015494.01.T01
Chr3 exon 70963525 70963882 70963525 ID=MsG0380015494.01.T01:exon:23710;Parent=MsG0380015494.01.T01
Chr3 exon 70964045 70964124 70964045 ID=MsG0380015494.01.T01:exon:23711;Parent=MsG0380015494.01.T01
Chr3 exon 70964271 70964494 70964271 ID=MsG0380015494.01.T01:exon:23712;Parent=MsG0380015494.01.T01
Chr3 five_prime_UTR 70960547 70960660 70960547 ID=MsG0380015494.01.T01:five_prime_utr;Parent=MsG0380015494.01.T01
Chr3 five_prime_UTR 70960799 70960973 70960799 ID=MsG0380015494.01.T01:five_prime_utr;Parent=MsG0380015494.01.T01
Chr3 CDS 70960974 70961015 70960974 ID=MsG0380015494.01.T01:cds;Parent=MsG0380015494.01.T01
Chr3 CDS 70962876 70962993 70962876 ID=MsG0380015494.01.T01:cds;Parent=MsG0380015494.01.T01
Chr3 CDS 70963525 70963882 70963525 ID=MsG0380015494.01.T01:cds;Parent=MsG0380015494.01.T01
Chr3 CDS 70964045 70964124 70964045 ID=MsG0380015494.01.T01:cds;Parent=MsG0380015494.01.T01
Chr3 CDS 70964271 70964359 70964271 ID=MsG0380015494.01.T01:cds;Parent=MsG0380015494.01.T01
Chr3 three_prime_UTR 70964360 70964494 70964360 ID=MsG0380015494.01.T01:three_prime_utr;Parent=MsG0380015494.01.T01
Gene Sequence

>MsG0380015494.01.T01

ATGAAGCTTTGTATGCTCGGAGATGCCCAACACGTCGAAGAGGCAGAGAAGATAGGTTTGGAATCAATGGATGTTGAAGCCTTGAAGAAGCTTAACAAAAATAAGAAGTTGGTGAAAAAGCTAGCCAAGAAGTACCATGCTTTCTTAGCTTCTGAGGGCAATTTCAGAATTCAAAAATTATGGCTTAAGTTGTTTGATTTTTATGTTTTGCATTACTTTACAGGGAAGTTCCCAACACTTGTCTCTCACCAAGAATCTCTTGAGGGAAAGGTCAATGAGACAAAGGCTATGGTGAAATTTCAGCTAAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGCAATGTTAGCATGGATGAAAAGCAAATATTTCAAAATGTTCAACTCAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAACTGGCAGAATGTGAGTGTTCCTTTTATTTCATCGTTGCACAAACTCATTGCTCTGTTTGCTTCTATTTTACCTTTCTTTTTTGTGCAAGTTATAAGACAGGATAAGTGGTTTGACATTGTTTTTTTGATTTGCATCATGTTGAATGTGTTTGCTCAGATAACTTTCAGAGTGTATGCTAGTTCGGTGCTTGTATCTGAAGAGTTCAAGGAAAATCTTACCGTGTCTTTTAAGGGAACTATTTCCTTTCATTTTTCAATATTTAAGTGA

Protein sequence

>MsG0380015494.01.T01

MKLCMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEGNFRIQKLWLKLFDFYVLHYFTGKFPTLVSHQESLEGKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVSVPFISSLHKLIALFASILPFFFVQVIRQDKWFDIVFLICIMLNVFAQITFRVYASSVLVSEEFKENLTVSFKGTISFHFSIFK*