AlfalfaGEDB | MsG0480023380.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023380.01

KEGG: K02934
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF01159 PF03868

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023380.01.T01	ACJ84110.1	99.145	234	2	0	1	234	1	234	5.65E-165	464

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023380.01.T01	P34091	79.915	234	47	0	1	234	1	234	4.00E-129	367

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023380.01.T01	B7FH81	99.145	234	2	0	1	234	1	234	2.70e-165	464

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048040.01	MsG0480023380.01	0.819952	8.864201e-53	6.919950e-50
MsG0080048922.01	MsG0480023380.01	0.821700	3.512330e-53	2.878638e-50
MsG0180000096.01	MsG0480023380.01	0.899994	1.140985e-77	1.445694e-73
MsG0180000118.01	MsG0480023380.01	0.908572	1.476124e-81	2.754700e-77
MsG0180001169.01	MsG0480023380.01	0.875678	2.550317e-68	1.201549e-64
MsG0180001829.01	MsG0480023380.01	0.893718	4.840521e-75	4.667157e-71
MsG0180001837.01	MsG0480023380.01	0.824444	8.044055e-54	7.125934e-51
MsG0180002738.01	MsG0480023380.01	0.859906	2.991439e-63	8.029020e-60
MsG0180003585.01	MsG0480023380.01	0.851133	1.081932e-60	2.168385e-57
MsG0180003897.01	MsG0480023380.01	0.921440	3.567725e-88	1.277218e-83
MsG0180004064.01	MsG0480023380.01	0.825787	3.874757e-54	3.567228e-51
MsG0180004503.01	MsG0480023380.01	0.883636	3.793271e-71	2.424864e-67
MsG0180004829.01	MsG0480023380.01	0.897844	9.475517e-77	1.090449e-72
MsG0180005384.01	MsG0480023380.01	0.904430	1.237735e-79	1.913857e-75
MsG0180005573.01	MsG0480023380.01	0.881406	2.465413e-70	1.442413e-66
MsG0280006301.01	MsG0480023380.01	0.889396	2.515518e-73	2.026014e-69
MsG0380014507.01	MsG0480023380.01	0.823298	1.493314e-53	1.280697e-50
MsG0480019165.01	MsG0480023380.01	0.879438	1.245591e-69	6.753712e-66
MsG0480019632.01	MsG0480023380.01	0.829142	6.073356e-55	6.161943e-52
MsG0480020796.01	MsG0480023380.01	0.921256	4.515686e-88	1.598067e-83
MsG0480020895.01	MsG0480023380.01	0.810794	9.653643e-51	5.874786e-48
MsG0480020911.01	MsG0480023380.01	0.936512	1.542525e-97	1.324556e-92
MsG0480021279.01	MsG0480023380.01	0.921912	1.942683e-88	7.126919e-84
MsG0480021293.01	MsG0480023380.01	0.800144	1.653864e-48	7.643608e-46
MsG0480021417.01	MsG0480023380.01	0.935929	3.905647e-97	3.234457e-92
MsG0480022006.01	MsG0480023380.01	0.916914	1.003448e-85	2.822741e-81
MsG0480022041.01	MsG0480023380.01	0.849133	3.930803e-60	7.380120e-57
MsG0480022302.01	MsG0480023380.01	0.805055	1.605678e-49	8.411746e-47
MsG0480022363.01	MsG0480023380.01	0.889641	2.018681e-73	1.642516e-69
MsG0480022789.01	MsG0480023380.01	0.827968	1.166743e-54	1.143968e-51
MsG0480022955.01	MsG0480023380.01	0.917614	4.284160e-86	1.247586e-81
MsG0480023380.01	MsG0480023774.01	0.902257	1.165823e-78	1.636604e-74
MsG0480023380.01	MsG0480023931.01	0.879994	7.909300e-70	4.382236e-66
MsG0480023380.01	MsG0480023996.01	0.874427	6.811302e-68	3.065264e-64
MsG0480023380.01	MsG0580024059.01	0.806454	8.161325e-50	4.431707e-47
MsG0480023380.01	MsG0580024481.01	0.846509	2.077577e-59	3.584420e-56
MsG0480023380.01	MsG0580024540.01	0.887112	1.898541e-72	1.393327e-68
MsG0480023380.01	MsG0580024738.01	0.924542	6.128872e-90	2.604598e-85
MsG0480023380.01	MsG0580024894.01	0.920990	6.341254e-88	2.212564e-83
MsG0480023380.01	MsG0580025750.01	0.852667	3.971594e-61	8.360397e-58
MsG0480023380.01	MsG0580026749.01	0.830826	2.359075e-55	2.514154e-52
MsG0480023380.01	MsG0580029284.01	0.818888	1.549060e-52	1.174111e-49
MsG0480023380.01	MsG0580029702.01	0.815661	8.246567e-52	5.720569e-49
MsG0480023380.01	MsG0580030073.01	0.821761	3.400113e-53	2.791379e-50
MsG0480023380.01	MsG0680031368.01	0.911829	3.901605e-83	8.518816e-79
MsG0480023380.01	MsG0680032459.01	0.870593	1.297582e-66	5.075529e-63
MsG0480023380.01	MsG0680035611.01	0.922759	6.473507e-89	2.494399e-84
MsG0480023380.01	MsG0780036859.01	0.844031	9.721102e-59	1.549655e-55
MsG0480023380.01	MsG0780037290.01	0.847835	8.993096e-60	1.618761e-56
MsG0480023380.01	MsG0780038383.01	0.896063	5.281427e-76	5.621248e-72
MsG0480023380.01	MsG0780040660.01	0.810394	1.178260e-50	7.093777e-48
MsG0480023380.01	MsG0780041058.01	0.848359	6.445972e-60	1.179894e-56
MsG0480023380.01	MsG0780041240.01	0.864247	1.394968e-64	4.350572e-61
MsG0480023380.01	MsG0780041244.01	0.830923	2.234022e-55	2.387655e-52
MsG0480023380.01	MsG0780041311.01	0.880343	5.936689e-70	3.332473e-66
MsG0480023380.01	MsG0780041461.01	0.820399	7.002088e-53	5.534660e-50
MsG0480023380.01	MsG0780041522.01	0.909812	3.765208e-82	7.458093e-78
MsG0480023380.01	MsG0780041790.01	0.852888	3.434843e-61	7.284624e-58
MsG0480023380.01	MsG0880041941.01	0.864641	1.050506e-64	3.322583e-61
MsG0480023380.01	MsG0880042517.01	0.925153	2.697262e-90	1.185002e-85
MsG0480023380.01	MsG0880042896.01	0.821939	3.091848e-53	2.551237e-50
MsG0480023380.01	MsG0880043076.01	0.904272	1.458777e-79	2.239599e-75
MsG0480023380.01	MsG0880044204.01	0.896660	2.980521e-76	3.255736e-72
MsG0480023380.01	MsG0880045836.01	0.873307	1.627273e-67	7.028457e-64
MsG0480023380.01	MsG0880046220.01	0.862244	5.811785e-64	1.690612e-60
MsG0480023380.01	MsG0880046486.01	0.818347	2.055142e-52	1.534592e-49
MsG0480023380.01	MsG0880046760.01	0.805084	1.583428e-49	8.301313e-47
MsG0480023380.01	MsG0880047310.01	0.871203	8.172957e-67	3.268873e-63
MsG0380015446.01	MsG0480023380.01	0.861787	8.024725e-64	2.297052e-60
MsG0380015494.01	MsG0480023380.01	0.844729	6.311827e-59	1.028404e-55
MsG0380015766.01	MsG0480023380.01	0.853928	1.727289e-61	3.793314e-58
MsG0380015857.01	MsG0480023380.01	0.936278	2.242707e-97	1.897279e-92
MsG0380016607.01	MsG0480023380.01	0.808165	3.541985e-50	2.010790e-47
MsG0380016653.01	MsG0480023380.01	0.851771	7.144017e-61	1.461400e-57
MsG0380016678.01	MsG0480023380.01	0.916004	2.996721e-85	8.063858e-81
MsG0380016732.01	MsG0480023380.01	0.867749	1.087517e-65	3.839129e-62
MsG0380016744.01	MsG0480023380.01	0.890202	1.219397e-73	1.015261e-69
MsG0380016760.01	MsG0480023380.01	0.877333	6.837597e-69	3.425235e-65
MsG0380016805.01	MsG0480023380.01	0.813498	2.482551e-51	1.623936e-48
MsG0380017155.01	MsG0480023380.01	0.807078	6.026182e-50	3.325031e-47
MsG0380017516.01	MsG0480023380.01	0.801001	1.106370e-48	5.226043e-46
MsG0380018056.01	MsG0480023380.01	0.874111	8.716614e-68	3.875398e-64
MsG0480018164.01	MsG0480023380.01	0.919173	6.264740e-87	1.983856e-82
MsG0280006629.01	MsG0480023380.01	0.896551	3.310479e-76	3.599447e-72
MsG0280006747.01	MsG0480023380.01	0.893896	4.100396e-75	3.984508e-71
MsG0280007055.01	MsG0480023380.01	0.948129	1.738669e-106	3.180827e-101
MsG0280007084.01	MsG0480023380.01	0.822670	2.092459e-53	1.763010e-50
MsG0280007995.01	MsG0480023380.01	0.847201	1.342916e-59	2.368792e-56
MsG0280010203.01	MsG0480023380.01	0.832700	8.139229e-56	9.168757e-53
MsG0280010232.01	MsG0480023380.01	0.842424	2.607545e-58	3.952351e-55
MsG0280010519.01	MsG0480023380.01	0.847030	1.496224e-59	2.624749e-56

PPI

Gene1	Gene2	Type
MsG0480023380.01	MsG0380016248.01	PPI
MsG0480023380.01	MsG0880047038.01	PPI
MsG0480023380.01	MsG0780039623.01	PPI
MsG0580024916.01	MsG0480023380.01	PPI
MsG0480023380.01	MsG0680034125.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023380.01.T01	MTR_5g098090	96.154	234	9	0	1	234	1	234	1.03e-162	449
MsG0480023380.01.T01	MTR_8g091910	92.735	234	2	1	1	234	1	219	3.70e-153	424
MsG0480023380.01.T01	MTR_3g094570	85.897	234	32	1	1	234	1	233	9.43e-145	404
MsG0480023380.01.T01	MTR_3g094860	85.897	234	32	1	1	234	1	233	2.34e-144	402

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023380.01.T01	AT1G74050	81.466	232	43	3	234	2	233	2.08e-122	347
MsG0480023380.01.T01	AT1G74060	80.603	232	45	3	234	2	233	1.06e-120	343
MsG0480023380.01.T01	AT1G18540	78.879	232	49	3	234	2	233	7.81e-116	330

Find 68 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTCTTGCCGGTAGATTTA+AGG	0.142019	4:+84434142	MsG0480023380.01.T01:CDS
GCACTTTCTTAACTGTAATA+TGG	0.229052	4:+84435212	MsG0480023380.01.T01:three_prime_UTR
CCAATTCCTCTGATCAAATC+AGG	0.248411	4:-84433571	None:intergenic
TCATCAGCAGGGTAAAATTT+TGG	0.250055	4:-84433715	None:intergenic
AGCATGCCAAAGGAAAATTT+TGG	0.277279	4:+84435327	MsG0480023380.01.T01:three_prime_UTR
TCTGGATTGCTTCTTGTAAC+TGG	0.291952	4:+84434197	MsG0480023380.01.T01:CDS
CACGAACTCGTCTTCTAGTT+TGG	0.298877	4:+84435126	MsG0480023380.01.T01:exon
CCTGATTTGATCAGAGGAAT+TGG	0.319315	4:+84433571	MsG0480023380.01.T01:CDS
TCAACAGCAGTTTCGGGCTT+AGG	0.337911	4:-84433685	None:intergenic
GCAGTTTCGGGCTTAGGTTT+AGG	0.345228	4:-84433679	None:intergenic
TCCTTTGAGACGTGTGAATC+AGG	0.346287	4:+84434738	MsG0480023380.01.T01:CDS
GAAAGGTATCTGGGCTATTA+AGG	0.349673	4:+84433624	MsG0480023380.01.T01:CDS
TGTATCACAAGAAAGGTATC+TGG	0.350934	4:+84433614	MsG0480023380.01.T01:CDS
CTCTGATCAAATCAGGGTTT+CGG	0.358025	4:-84433564	None:intergenic
CTTCTTGCCGGTAGATTTAA+GGG	0.364740	4:+84434143	MsG0480023380.01.T01:CDS
CCAGACTTGAAGACTTATCT+TGG	0.410256	4:+84435069	MsG0480023380.01.T01:CDS
CTGGGTGCTCTCTGCTTTGT+CGG	0.425359	4:-84433535	None:intergenic
CCAAGATAAGTCTTCAAGTC+TGG	0.428069	4:-84435069	None:intergenic
TTGAAAAGTACTTGTCATCA+AGG	0.430348	4:-84434816	None:intergenic
ACAGTGCTGATTCTTCTTGC+CGG	0.435264	4:+84434131	MsG0480023380.01.T01:CDS
CGAATTCTTTGAGTCAGATA+AGG	0.457015	4:+84434873	MsG0480023380.01.T01:CDS
GGCTTCTTCACATCATCAGC+AGG	0.465308	4:-84433727	None:intergenic
TGAAGACTTATCTTGGTGCC+AGG	0.466625	4:+84435076	MsG0480023380.01.T01:CDS
AAGAAGAATCAGCACTGTGC+CGG	0.476099	4:-84434126	None:intergenic
AACACCGGAGATATCGACTT+TGG	0.477360	4:-84434782	None:intergenic
ACCTGCCTTGAGAGAAAACC+TGG	0.493075	4:-84435094	None:intergenic
ATCAGGGTTTCGGCTAACCC+TGG	0.499591	4:-84433554	None:intergenic
TGGTCATCTTTCTTCTGCTG+AGG	0.501451	4:-84435003	None:intergenic
TCTTCTAGTTTGGAGGAAAG+AGG	0.510621	4:+84435136	MsG0480023380.01.T01:exon
ACTGTAATATGGAATTCTGC+TGG	0.512780	4:+84435223	MsG0480023380.01.T01:three_prime_UTR
AGAAGAATCAGCACTGTGCC+GGG	0.513749	4:-84434125	None:intergenic
CAATTCCTCTGATCAAATCA+GGG	0.517272	4:-84433570	None:intergenic
AGGAACTCCGTTGATCTTGA+AGG	0.517314	4:-84434719	None:intergenic
TTTGCATTTCGTAGCAGCAA+TGG	0.530175	4:+84433510	MsG0480023380.01.T01:exon
CGATATCTCCGGTGTTAATG+TGG	0.532682	4:+84434789	MsG0480023380.01.T01:CDS
GTGAATCAGGCCTATGTGAT+TGG	0.535696	4:+84434751	MsG0480023380.01.T01:CDS
TCACAGATGTATCACAAGAA+AGG	0.542107	4:+84433607	MsG0480023380.01.T01:CDS
TTCAGGGCAAGCATCACTCC+CGG	0.546234	4:+84434107	MsG0480023380.01.T01:intron
CCTCTTGCCCTTAAATCTAC+CGG	0.549567	4:-84434150	None:intergenic
AACCTAAGCTTAGTCTGCTT+AGG	0.550436	4:-84433769	None:intergenic
GTATCACAAGAAAGGTATCT+GGG	0.554030	4:+84433615	MsG0480023380.01.T01:CDS
GAACTCGTCTTCTAGTTTGG+AGG	0.559347	4:+84435129	MsG0480023380.01.T01:exon
CTTCTAGTTTGGAGGAAAGA+GGG	0.566293	4:+84435137	MsG0480023380.01.T01:exon
GGCTTATGCTTGTTGCGAAG+AGG	0.566563	4:-84433748	None:intergenic
AGCCTAAGCAGACTAAGCTT+AGG	0.566985	4:+84433767	MsG0480023380.01.T01:CDS
TCAGGGTTTCGGCTAACCCT+GGG	0.568120	4:-84433553	None:intergenic
CGAAACCCTGATTTGATCAG+AGG	0.574541	4:+84433565	MsG0480023380.01.T01:CDS
CGGTAGATTTAAGGGCAAGA+GGG	0.577532	4:+84434151	MsG0480023380.01.T01:CDS
GCCTGATTCACACGTCTCAA+AGG	0.578175	4:-84434739	None:intergenic
TCAACCAAAGTCGATATCTC+CGG	0.580594	4:+84434778	MsG0480023380.01.T01:CDS
CCGGTAGATTTAAGGGCAAG+AGG	0.581183	4:+84434150	MsG0480023380.01.T01:CDS
ACAATAGCAAAATTGCATGA+AGG	0.581258	4:-84435253	None:intergenic
CTTTCACTTGAGCATGCCAA+AGG	0.584843	4:+84435317	MsG0480023380.01.T01:three_prime_UTR
GGAACTCCGTTGATCTTGAA+GGG	0.585587	4:-84434718	None:intergenic
GGTTGATGTACCAATCACAT+AGG	0.591225	4:-84434761	None:intergenic
GACAAAGCAGAGAGCACCCA+GGG	0.607975	4:+84433537	MsG0480023380.01.T01:CDS
AACTAGAAGACGAGTTCGTG+TGG	0.615065	4:-84435123	None:intergenic
TCAGGTCCCTTCAAGATCAA+CGG	0.616664	4:+84434712	MsG0480023380.01.T01:intron
ATTCTTTGAGTCAGATAAGG+AGG	0.630746	4:+84434876	MsG0480023380.01.T01:CDS
TAGATTTAAGGGCAAGAGGG+TGG	0.640763	4:+84434154	MsG0480023380.01.T01:CDS
CGACAAAGCAGAGAGCACCC+AGG	0.641880	4:+84433536	MsG0480023380.01.T01:CDS
GTTACAAGAAGCAATCCAGA+AGG	0.643198	4:-84434194	None:intergenic
GCTTCTTCACATCATCAGCA+GGG	0.669182	4:-84433726	None:intergenic
AAGGTTATCCACATTAACAC+CGG	0.677708	4:-84434797	None:intergenic
TTAGGTTTAGGATCATGACG+AGG	0.681191	4:-84433667	None:intergenic
TAGGTTTAGGATCATGACGA+GGG	0.683516	4:-84433666	None:intergenic
GAAAGATGACCAGAAAACAG+TGG	0.686525	4:+84435014	MsG0480023380.01.T01:CDS
CTGACTCGGATAAAGGGGCA+GGG	0.687621	4:-84435404	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTGTTTTATAATTTTTTTAA+TGG	+	Chr4:84435171-84435190	MsG0480023380.01.T01:three_prime_UTR	10.0%
!!!	ACATGATTTTGATATTATTT+GGG	+	Chr4:84433979-84433998	MsG0480023380.01.T01:intron	15.0%
!!!	TACATGATTTTGATATTATT+TGG	+	Chr4:84433978-84433997	MsG0480023380.01.T01:intron	15.0%
!!!	TATCATTTTTGTTAAGAAAA+AGG	-	Chr4:84435376-84435395	None:intergenic	15.0%
!!	AAGATCAGAAATTTAATTGA+TGG	-	Chr4:84434293-84434312	None:intergenic	20.0%
!!	AATATCAAAATCATGTACAA+AGG	-	Chr4:84433975-84433994	None:intergenic	20.0%
!!!	CAGTTATTCTTATCATTTTA+CGG	+	Chr4:84433816-84433835	MsG0480023380.01.T01:intron	20.0%
!!!	TATGAATTTTAGTTATTGTG+AGG	+	Chr4:84435294-84435313	MsG0480023380.01.T01:three_prime_UTR	20.0%
!!!	TCTTATTCTTTTTATGTACT+AGG	+	Chr4:84434309-84434328	MsG0480023380.01.T01:intron	20.0%
!!!	TGTTTTTTATTTTTGATTGC+AGG	+	Chr4:84434966-84434985	MsG0480023380.01.T01:intron	20.0%
!!!	TTTTGATATTATTTGGGATA+TGG	+	Chr4:84433985-84434004	MsG0480023380.01.T01:intron	20.0%
!	GTGCCTGTTAAAAAAAAAAA+AGG	-	Chr4:84434647-84434666	None:intergenic	25.0%
!	TCACCTAAAATAACAAATAC+TGG	-	Chr4:84433950-84433969	None:intergenic	25.0%
!!!	AATCACTTTTGTTTTGTGTT+GGG	+	Chr4:84434073-84434092	MsG0480023380.01.T01:intron	25.0%
!!!	CAACCAGTATTTGTTATTTT+AGG	+	Chr4:84433944-84433963	MsG0480023380.01.T01:intron	25.0%
!!!	GTGCCTTTTTTTTTTTTAAC+AGG	+	Chr4:84434641-84434660	MsG0480023380.01.T01:intron	25.0%
!!!	TAATCACTTTTGTTTTGTGT+TGG	+	Chr4:84434072-84434091	MsG0480023380.01.T01:intron	25.0%
	ACAATAGCAAAATTGCATGA+AGG	-	Chr4:84435256-84435275	None:intergenic	30.0%
	ACAGTGTTCTTTGTGTTAAT+TGG	+	Chr4:84433886-84433905	MsG0480023380.01.T01:intron	30.0%
	AGAAATGTTGACGAGATATA+AGG	+	Chr4:84434343-84434362	MsG0480023380.01.T01:intron	30.0%
	CAGTGTTCTTTGTGTTAATT+GGG	+	Chr4:84433887-84433906	MsG0480023380.01.T01:intron	30.0%
	GAAATGTTGACGAGATATAA+GGG	+	Chr4:84434344-84434363	MsG0480023380.01.T01:intron	30.0%
	GATGTCAACATTGAATATCA+TGG	+	Chr4:84434619-84434638	MsG0480023380.01.T01:intron	30.0%
	GCACTTTCTTAACTGTAATA+TGG	+	Chr4:84435212-84435231	MsG0480023380.01.T01:three_prime_UTR	30.0%
	TATTCAATGTTGACATCAGT+TGG	-	Chr4:84434616-84434635	None:intergenic	30.0%
	TTTGTGTTAATTGGGATTAC+TGG	+	Chr4:84433895-84433914	MsG0480023380.01.T01:intron	30.0%
	TTTGTTGCTCTTGATTGATA+AGG	+	Chr4:84434239-84434258	MsG0480023380.01.T01:intron	30.0%
!	TGATGACAAGTACTTTTCAA+AGG	+	Chr4:84434819-84434838	MsG0480023380.01.T01:CDS	30.0%
!	TTTTTCTTACTTTGCATCTC+AGG	+	Chr4:84434694-84434713	MsG0480023380.01.T01:intron	30.0%
!!	ACATAAGTTTTGTCACTGTT+TGG	-	Chr4:84434522-84434541	None:intergenic	30.0%
!!	CATAAGTTTTGTCACTGTTT+GGG	-	Chr4:84434521-84434540	None:intergenic	30.0%
!!	TTGAAAAGTACTTGTCATCA+AGG	-	Chr4:84434819-84434838	None:intergenic	30.0%
!!	TTTTTGATTGCAGGAGAAAA+AGG	+	Chr4:84434975-84434994	MsG0480023380.01.T01:intron	30.0%
	AAGGTTATCCACATTAACAC+CGG	-	Chr4:84434800-84434819	None:intergenic	35.0%
	ACTGTAATATGGAATTCTGC+TGG	+	Chr4:84435223-84435242	MsG0480023380.01.T01:three_prime_UTR	35.0%
	ATTCTTTGAGTCAGATAAGG+AGG	+	Chr4:84434876-84434895	MsG0480023380.01.T01:CDS	35.0%
	CAATTCCTCTGATCAAATCA+GGG	-	Chr4:84433573-84433592	None:intergenic	35.0%
	CGAATTCTTTGAGTCAGATA+AGG	+	Chr4:84434873-84434892	MsG0480023380.01.T01:CDS	35.0%
	TCACAGATGTATCACAAGAA+AGG	+	Chr4:84433607-84433626	MsG0480023380.01.T01:CDS	35.0%
	TGCACAGACAGAAAAAACTA+GGG	+	Chr4:84433487-84433506	MsG0480023380.01.T01:five_prime_UTR	35.0%
	TTGCACAGACAGAAAAAACT+AGG	+	Chr4:84433486-84433505	MsG0480023380.01.T01:five_prime_UTR	35.0%
!	AGCATGCCAAAGGAAAATTT+TGG	+	Chr4:84435327-84435346	MsG0480023380.01.T01:three_prime_UTR	35.0%
!	CTGTCTCCAAAATTTTCCTT+TGG	-	Chr4:84435336-84435355	None:intergenic	35.0%
!	TCATCAGCAGGGTAAAATTT+TGG	-	Chr4:84433718-84433737	None:intergenic	35.0%
!!	GTATCACAAGAAAGGTATCT+GGG	+	Chr4:84433615-84433634	MsG0480023380.01.T01:CDS	35.0%
!!	TGGTTTTTCAACAGCAGTTT+CGG	-	Chr4:84433695-84433714	None:intergenic	35.0%
!!	TGTATCACAAGAAAGGTATC+TGG	+	Chr4:84433614-84433633	MsG0480023380.01.T01:CDS	35.0%
!!!	AGTTTTTTCTGTCTGTGCAA+AGG	-	Chr4:84433486-84433505	None:intergenic	35.0%
!!!	GTTTTTTCTGTCTGTGCAAA+GGG	-	Chr4:84433485-84433504	None:intergenic	35.0%
!!!	TTGGGTCTTTTTTGTCTTCA+GGG	+	Chr4:84434091-84434110	MsG0480023380.01.T01:intron	35.0%
	AAAAAGAAGAGCAAGGGAGA+AGG	+	Chr4:84434850-84434869	MsG0480023380.01.T01:CDS	40.0%
	AACCTAAGCTTAGTCTGCTT+AGG	-	Chr4:84433772-84433791	None:intergenic	40.0%
	CCAAGATAAGTCTTCAAGTC+TGG	-	Chr4:84435072-84435091	None:intergenic	40.0%
	CCAATTCCTCTGATCAAATC+AGG	-	Chr4:84433574-84433593	None:intergenic	40.0%
	CCAGACTTGAAGACTTATCT+TGG	+	Chr4:84435069-84435088	MsG0480023380.01.T01:CDS	40.0%
	CTCTGATCAAATCAGGGTTT+CGG	-	Chr4:84433567-84433586	None:intergenic	40.0%
	CTTCTTGCCGGTAGATTTAA+GGG	+	Chr4:84434143-84434162	MsG0480023380.01.T01:CDS	40.0%
	GAAAGATGACCAGAAAACAG+TGG	+	Chr4:84435014-84435033	MsG0480023380.01.T01:CDS	40.0%
	GCTATTAAGGCCAAAAATGG+TGG	+	Chr4:84433637-84433656	MsG0480023380.01.T01:CDS	40.0%
	GTTACAAGAAGCAATCCAGA+AGG	-	Chr4:84434197-84434216	None:intergenic	40.0%
	GTTATGCTCATTGCTTCTGT+TGG	+	Chr4:84434937-84434956	MsG0480023380.01.T01:intron	40.0%
	TCAACCAAAGTCGATATCTC+CGG	+	Chr4:84434778-84434797	MsG0480023380.01.T01:CDS	40.0%
	TCTGGATTGCTTCTTGTAAC+TGG	+	Chr4:84434197-84434216	MsG0480023380.01.T01:CDS	40.0%
	TCTTCTTGCCGGTAGATTTA+AGG	+	Chr4:84434142-84434161	MsG0480023380.01.T01:CDS	40.0%
	TGGGCTATTAAGGCCAAAAA+TGG	+	Chr4:84433634-84433653	MsG0480023380.01.T01:CDS	40.0%
	TTTGCATTTCGTAGCAGCAA+TGG	+	Chr4:84433510-84433529	MsG0480023380.01.T01:exon	40.0%
!	CCTGATTTGATCAGAGGAAT+TGG	+	Chr4:84433571-84433590	MsG0480023380.01.T01:CDS	40.0%
!	GGTTGATGTACCAATCACAT+AGG	-	Chr4:84434764-84434783	None:intergenic	40.0%
!	TAGGTTTAGGATCATGACGA+GGG	-	Chr4:84433669-84433688	None:intergenic	40.0%
!	TCAGCAGGGTAAAATTTTGG+TGG	-	Chr4:84433715-84433734	None:intergenic	40.0%
!	TTAGGTTTAGGATCATGACG+AGG	-	Chr4:84433670-84433689	None:intergenic	40.0%
!!	CTTCTAGTTTGGAGGAAAGA+GGG	+	Chr4:84435137-84435156	MsG0480023380.01.T01:exon	40.0%
!!	GAAAGGTATCTGGGCTATTA+AGG	+	Chr4:84433624-84433643	MsG0480023380.01.T01:CDS	40.0%
!!	GGTTTTTCAACAGCAGTTTC+GGG	-	Chr4:84433694-84433713	None:intergenic	40.0%
!!	TCTTCTAGTTTGGAGGAAAG+AGG	+	Chr4:84435136-84435155	MsG0480023380.01.T01:exon	40.0%
!!!	CTCCCTTGCTCTTCTTTTTT+GGG	-	Chr4:84434849-84434868	None:intergenic	40.0%
!!!	GTTGGGTCTTTTTTGTCTTC+AGG	+	Chr4:84434090-84434109	MsG0480023380.01.T01:intron	40.0%
!!!	TCCCTTGCTCTTCTTTTTTG+GGG	-	Chr4:84434848-84434867	None:intergenic	40.0%
!!!	TCTCCCTTGCTCTTCTTTTT+TGG	-	Chr4:84434850-84434869	None:intergenic	40.0%
!!!	TTTTTGAAGCAGCTTCCTTC+TGG	+	Chr4:84434179-84434198	MsG0480023380.01.T01:CDS	40.0%
	AACTAGAAGACGAGTTCGTG+TGG	-	Chr4:84435126-84435145	None:intergenic	45.0%
	AAGAAGAATCAGCACTGTGC+CGG	-	Chr4:84434129-84434148	None:intergenic	45.0%
	AGCCCCAAAAAAGAAGAGCA+AGG	+	Chr4:84434843-84434862	MsG0480023380.01.T01:CDS	45.0%
	AGCCTAAGCAGACTAAGCTT+AGG	+	Chr4:84433767-84433786	MsG0480023380.01.T01:CDS	45.0%
	AGGAACTCCGTTGATCTTGA+AGG	-	Chr4:84434722-84434741	None:intergenic	45.0%
	CCTCTTGCCCTTAAATCTAC+CGG	-	Chr4:84434153-84434172	None:intergenic	45.0%
	CGGTAGATTTAAGGGCAAGA+GGG	+	Chr4:84434151-84434170	MsG0480023380.01.T01:CDS	45.0%
	CTTTCACTTGAGCATGCCAA+AGG	+	Chr4:84435317-84435336	MsG0480023380.01.T01:three_prime_UTR	45.0%
	GCCCCAAAAAAGAAGAGCAA+GGG	+	Chr4:84434844-84434863	MsG0480023380.01.T01:CDS	45.0%
	GCTTCTTCACATCATCAGCA+GGG	-	Chr4:84433729-84433748	None:intergenic	45.0%
	GGAACTCCGTTGATCTTGAA+GGG	-	Chr4:84434721-84434740	None:intergenic	45.0%
	GTGAATCAGGCCTATGTGAT+TGG	+	Chr4:84434751-84434770	MsG0480023380.01.T01:CDS	45.0%
	TAGATTTAAGGGCAAGAGGG+TGG	+	Chr4:84434154-84434173	MsG0480023380.01.T01:CDS	45.0%
	TCAGGTCCCTTCAAGATCAA+CGG	+	Chr4:84434712-84434731	MsG0480023380.01.T01:intron	45.0%
	TGAAGAGAAGCCAAGACAAG+TGG	-	Chr4:84434669-84434688	None:intergenic	45.0%
	TGGTCATCTTTCTTCTGCTG+AGG	-	Chr4:84435006-84435025	None:intergenic	45.0%
	TTAACAGGCACCACTTGTCT+TGG	+	Chr4:84434656-84434675	MsG0480023380.01.T01:intron	45.0%
!	AGGGAAAACGCCACCATTTT+TGG	-	Chr4:84433650-84433669	None:intergenic	45.0%
!	CACGAACTCGTCTTCTAGTT+TGG	+	Chr4:84435126-84435145	MsG0480023380.01.T01:exon	45.0%
!	CGAAACCCTGATTTGATCAG+AGG	+	Chr4:84433565-84433584	MsG0480023380.01.T01:CDS	45.0%
!	CGATATCTCCGGTGTTAATG+TGG	+	Chr4:84434789-84434808	MsG0480023380.01.T01:CDS	45.0%
!!	AACACCGGAGATATCGACTT+TGG	-	Chr4:84434785-84434804	None:intergenic	45.0%
!!	ACAGTGCTGATTCTTCTTGC+CGG	+	Chr4:84434131-84434150	MsG0480023380.01.T01:CDS	45.0%
!!	GAACTCGTCTTCTAGTTTGG+AGG	+	Chr4:84435129-84435148	MsG0480023380.01.T01:exon	45.0%
!!	TCCTTTGAGACGTGTGAATC+AGG	+	Chr4:84434738-84434757	MsG0480023380.01.T01:CDS	45.0%
!!	TGAAGACTTATCTTGGTGCC+AGG	+	Chr4:84435076-84435095	MsG0480023380.01.T01:CDS	45.0%
	ACCTGCCTTGAGAGAAAACC+TGG	-	Chr4:84435097-84435116	None:intergenic	50.0%
	AGAAGAATCAGCACTGTGCC+GGG	-	Chr4:84434128-84434147	None:intergenic	50.0%
	CCGGTAGATTTAAGGGCAAG+AGG	+	Chr4:84434150-84434169	MsG0480023380.01.T01:CDS	50.0%
	GCAGTTTCGGGCTTAGGTTT+AGG	-	Chr4:84433682-84433701	None:intergenic	50.0%
	GCCTGATTCACACGTCTCAA+AGG	-	Chr4:84434742-84434761	None:intergenic	50.0%
	GGCTTCTTCACATCATCAGC+AGG	-	Chr4:84433730-84433749	None:intergenic	50.0%
	TCAACAGCAGTTTCGGGCTT+AGG	-	Chr4:84433688-84433707	None:intergenic	50.0%
!	ATGCAGCGTCCACTGTTTTC+TGG	-	Chr4:84435026-84435045	None:intergenic	50.0%
!	GGCTTATGCTTGTTGCGAAG+AGG	-	Chr4:84433751-84433770	None:intergenic	50.0%
!!	TGGTGCCAGGTTTTCTCTCA+AGG	+	Chr4:84435089-84435108	MsG0480023380.01.T01:CDS	50.0%
	ATCAGGGTTTCGGCTAACCC+TGG	-	Chr4:84433557-84433576	None:intergenic	55.0%
	CTGGGTGCTCTCTGCTTTGT+CGG	-	Chr4:84433538-84433557	None:intergenic	55.0%
	TCAGGGTTTCGGCTAACCCT+GGG	-	Chr4:84433556-84433575	None:intergenic	55.0%
	TTCAGGGCAAGCATCACTCC+CGG	+	Chr4:84434107-84434126	MsG0480023380.01.T01:intron	55.0%
!	GCCAGGTTTTCTCTCAAGGC+AGG	+	Chr4:84435093-84435112	MsG0480023380.01.T01:CDS	55.0%
!!	GACAAAGCAGAGAGCACCCA+GGG	+	Chr4:84433537-84433556	MsG0480023380.01.T01:CDS	55.0%
!!	CGACAAAGCAGAGAGCACCC+AGG	+	Chr4:84433536-84433555	MsG0480023380.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	84433485	84435411	84433485	ID=MsG0480023380.01;Name=MsG0480023380.01
Chr4	mRNA	84433485	84435411	84433485	ID=MsG0480023380.01.T01;Parent=MsG0480023380.01;Name=MsG0480023380.01.T01;_AED=0.32;_eAED=0.32;_QI=44\|1\|1\|1\|1\|1\|4\|268\|234
Chr4	exon	84433485	84433788	84433485	ID=MsG0480023380.01.T01:exon:5631;Parent=MsG0480023380.01.T01
Chr4	exon	84434112	84434218	84434112	ID=MsG0480023380.01.T01:exon:5632;Parent=MsG0480023380.01.T01
Chr4	exon	84434716	84434897	84434716	ID=MsG0480023380.01.T01:exon:5633;Parent=MsG0480023380.01.T01
Chr4	exon	84434988	84435411	84434988	ID=MsG0480023380.01.T01:exon:5634;Parent=MsG0480023380.01.T01
Chr4	five_prime_UTR	84433485	84433528	84433485	ID=MsG0480023380.01.T01:five_prime_utr;Parent=MsG0480023380.01.T01
Chr4	CDS	84433529	84433788	84433529	ID=MsG0480023380.01.T01:cds;Parent=MsG0480023380.01.T01
Chr4	CDS	84434112	84434218	84434112	ID=MsG0480023380.01.T01:cds;Parent=MsG0480023380.01.T01
Chr4	CDS	84434716	84434897	84434716	ID=MsG0480023380.01.T01:cds;Parent=MsG0480023380.01.T01
Chr4	CDS	84434988	84435143	84434988	ID=MsG0480023380.01.T01:cds;Parent=MsG0480023380.01.T01
Chr4	three_prime_UTR	84435144	84435411	84435144	ID=MsG0480023380.01.T01:three_prime_utr;Parent=MsG0480023380.01.T01

Gene Sequence

>MsG0480023380.01.T01

ATGGCGCCGACAAAGCAGAGAGCACCCAGGGTTAGCCGAAACCCTGATTTGATCAGAGGAATTGGAAAGTTCTCAAAGTCACAGATGTATCACAAGAAAGGTATCTGGGCTATTAAGGCCAAAAATGGTGGCGTTTTCCCTCGTCATGATCCTAAACCTAAGCCCGAAACTGCTGTTGAAAAACCACCAAAATTTTACCCTGCTGATGATGTGAAGAAGCCTCTTCGCAACAAGCATAAGCCTAAGCAGACTAAGCTTAGGGCAAGCATCACTCCCGGCACAGTGCTGATTCTTCTTGCCGGTAGATTTAAGGGCAAGAGGGTGGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACTGGTCCCTTCAAGATCAACGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTGATTGGTACATCAACCAAAGTCGATATCTCCGGTGTTAATGTGGATAACCTTGATGACAAGTACTTTTCAAAGGAAGCCCCAAAAAAGAAGAGCAAGGGAGAAGGCGAATTCTTTGAGTCAGATAAGGAGGAGAAAAAGGCGTTACCTCAGCAGAAGAAAGATGACCAGAAAACAGTGGACGCTGCATTGATAAAAGCTATTGAGAGCGTTCCAGACTTGAAGACTTATCTTGGTGCCAGGTTTTCTCTCAAGGCAGGTGTGAAGCCACACGAACTCGTCTTCTAG

Protein sequence

>MsG0480023380.01.T01

MAPTKQRAPRVSRNPDLIRGIGKFSKSQMYHKKGIWAIKAKNGGVFPRHDPKPKPETAVEKPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFESDKEEKKALPQQKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGVKPHELVF*