AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025750.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025750.01.T01 MTR_5g033960 100.000 155 0 0 1 155 1 155 6.33e-114 319
MsG0580025750.01.T01 MTR_8g088060 99.355 155 1 0 1 155 1 155 2.24e-113 318
MsG0580025750.01.T01 MTR_7g105080 100.000 76 0 0 1 76 1 76 1.94e-49 155
MsG0580025750.01.T01 MTR_3g092130 100.000 76 0 0 1 76 1 76 1.94e-49 155
MsG0580025750.01.T01 MTR_1g059690 100.000 76 0 0 1 76 1 76 1.94e-49 155
MsG0580025750.01.T01 MTR_5g092700 98.701 77 1 0 1 77 1 77 2.53e-49 155
MsG0580025750.01.T01 MTR_5g092700 62.162 74 28 0 3 76 79 152 4.61e-26 97.1
MsG0580025750.01.T01 MTR_4g073580 98.701 77 1 0 1 77 1 77 2.53e-49 155
MsG0580025750.01.T01 MTR_4g073580 62.162 74 28 0 3 76 79 152 4.61e-26 97.1
MsG0580025750.01.T01 MTR_3g092130 100.000 76 0 0 1 76 1 76 2.79e-49 155
MsG0580025750.01.T01 MTR_4g073580 98.701 77 1 0 1 77 1 77 1.12e-48 155
MsG0580025750.01.T01 MTR_4g073580 44.231 104 28 1 3 76 79 182 1.60e-19 80.9
MsG0580025750.01.T01 MTR_4g088485 97.436 78 2 0 1 78 1 78 2.07e-48 155
MsG0580025750.01.T01 MTR_4g088485 100.000 76 0 0 1 76 138 213 2.51e-48 155
MsG0580025750.01.T01 MTR_4g088485 78.205 78 2 1 1 78 77 139 1.64e-33 117
MsG0580025750.01.T01 MTR_7g116360 97.436 78 2 0 1 78 1 78 2.27e-48 156
MsG0580025750.01.T01 MTR_7g116360 97.436 78 2 0 1 78 77 154 2.27e-48 156
MsG0580025750.01.T01 MTR_7g116360 100.000 76 0 0 1 76 153 228 2.68e-48 155
MsG0580025750.01.T01 MTR_1g066390 98.701 77 1 0 1 77 153 229 2.58e-48 156
MsG0580025750.01.T01 MTR_1g066390 97.436 78 2 0 1 78 1 78 2.72e-48 155
MsG0580025750.01.T01 MTR_1g066390 97.436 78 2 0 1 78 77 154 2.72e-48 155
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 7.15e-48 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 7.15e-48 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 7.15e-48 156
MsG0580025750.01.T01 MTR_4g080920 96.154 78 3 0 1 78 77 154 7.45e-48 154
MsG0580025750.01.T01 MTR_4g080920 96.154 78 3 0 1 78 1 78 1.09e-47 154
MsG0580025750.01.T01 MTR_4g080920 68.831 77 24 0 1 77 153 229 2.44e-29 107
MsG0580025750.01.T01 MTR_6g061930 97.436 78 2 0 1 78 1 78 1.42e-47 155
MsG0580025750.01.T01 MTR_6g061930 97.436 78 2 0 1 78 77 154 1.42e-47 155
MsG0580025750.01.T01 MTR_6g061930 100.000 76 0 0 1 76 214 289 1.73e-47 155
MsG0580025750.01.T01 MTR_6g061930 75.641 78 4 1 1 78 153 215 6.95e-31 112
MsG0580025750.01.T01 MTR_7g116360 97.436 78 2 0 1 78 49 126 1.56e-47 155
MsG0580025750.01.T01 MTR_7g116360 97.436 78 2 0 1 78 125 202 1.56e-47 155
MsG0580025750.01.T01 MTR_7g116360 100.000 76 0 0 1 76 201 276 1.84e-47 155
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.74e-47 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.74e-47 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.74e-47 156
MsG0580025750.01.T01 MTR_4g081010 100.000 76 0 0 1 76 229 304 2.04e-47 155
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.85e-47 155
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.85e-47 155
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.85e-47 155
MsG0580025750.01.T01 MTR_8g081020 97.436 78 2 0 1 78 1 78 7.01e-47 156
MsG0580025750.01.T01 MTR_8g081020 97.436 78 2 0 1 78 77 154 7.01e-47 156
MsG0580025750.01.T01 MTR_8g081020 97.436 78 2 0 1 78 153 230 7.01e-47 156
MsG0580025750.01.T01 MTR_8g081020 97.436 78 2 0 1 78 229 306 7.01e-47 156
MsG0580025750.01.T01 MTR_8g081020 100.000 76 0 0 1 76 305 380 8.23e-47 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 1 78 7.64e-47 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 77 154 7.64e-47 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 153 230 7.64e-47 156
MsG0580025750.01.T01 MTR_4g091580 100.000 76 0 0 1 76 305 380 9.06e-47 156
MsG0580025750.01.T01 MTR_4g091580 96.154 78 3 0 1 78 229 306 2.13e-46 155
MsG0580025750.01.T01 MTR_4g080797 97.436 78 2 0 1 78 1 78 9.06e-47 156
MsG0580025750.01.T01 MTR_4g080797 97.436 78 2 0 1 78 77 154 9.06e-47 156
MsG0580025750.01.T01 MTR_4g080797 97.436 78 2 0 1 78 153 230 9.06e-47 156
MsG0580025750.01.T01 MTR_4g080797 97.436 78 2 0 1 78 229 306 9.06e-47 156
MsG0580025750.01.T01 MTR_4g080797 100.000 76 0 0 1 76 305 380 1.06e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 9.06e-47 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 9.06e-47 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 9.06e-47 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 9.06e-47 156
MsG0580025750.01.T01 MTR_8g018230 100.000 76 0 0 1 76 305 380 1.06e-46 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 9.45e-47 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 9.45e-47 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 9.45e-47 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 229 306 9.45e-47 156
MsG0580025750.01.T01 MTR_4g081010 100.000 76 0 0 1 76 305 380 1.11e-46 155
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 305 382 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 100.000 76 0 0 1 76 381 456 4.24e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 305 382 3.58e-46 156
MsG0580025750.01.T01 MTR_8g018230 100.000 76 0 0 1 76 381 456 4.24e-46 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 1.04e-45 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 1.04e-45 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 1.04e-45 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 1.04e-45 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 305 382 1.04e-45 156
MsG0580025750.01.T01 MTR_8g018230 97.436 78 2 0 1 78 381 458 1.04e-45 156
MsG0580025750.01.T01 MTR_8g018230 100.000 76 0 0 1 76 457 532 1.22e-45 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 1 78 1.13e-45 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 77 154 1.13e-45 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 153 230 1.13e-45 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 229 306 1.13e-45 156
MsG0580025750.01.T01 MTR_4g091580 97.436 78 2 0 1 78 381 458 1.13e-45 156
MsG0580025750.01.T01 MTR_4g091580 100.000 76 0 0 1 76 457 532 1.33e-45 156
MsG0580025750.01.T01 MTR_4g091580 94.872 78 4 0 1 78 305 382 3.69e-44 152
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.13e-45 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.13e-45 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.13e-45 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 229 306 1.13e-45 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 305 382 1.13e-45 156
MsG0580025750.01.T01 MTR_4g081010 97.436 78 2 0 1 78 381 458 1.13e-45 156
MsG0580025750.01.T01 MTR_4g081010 100.000 76 0 0 1 76 457 532 1.32e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 77 154 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 153 230 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 229 306 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 305 382 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 381 458 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 457 534 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 533 610 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 609 686 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 97.436 78 2 0 1 78 685 762 9.03e-45 156
MsG0580025750.01.T01 MTR_4g088495 100.000 76 0 0 1 76 761 836 1.05e-44 156
MsG0580025750.01.T01 MTR_4g088495 96.154 78 3 0 1 78 1 78 1.68e-43 153
MsG0580025750.01.T01 MTR_8g479250 94.872 78 4 0 1 78 141 218 2.68e-37 129
MsG0580025750.01.T01 MTR_8g479250 76.389 72 6 1 1 72 217 277 2.13e-26 101
MsG0580025750.01.T01 MTR_8g479250 100.000 41 0 0 1 41 1 41 2.93e-20 85.1
MsG0580025750.01.T01 MTR_8g479250 88.889 36 4 0 43 78 107 142 3.32e-14 68.6
MsG0580025750.01.T01 MTR_1g046640 71.053 76 22 0 1 76 240 315 6.10e-28 105
MsG0580025750.01.T01 MTR_5g076810 68.831 77 23 1 1 76 194 270 1.26e-27 103
MsG0580025750.01.T01 MTR_5g076660 69.863 73 22 0 1 73 266 338 8.04e-27 103
MsG0580025750.01.T01 MTR_5g067400 68.421 76 24 0 1 76 241 316 1.95e-25 99.0
MsG0580025750.01.T01 MTR_5g061310 60.000 75 30 0 1 75 2 76 1.27e-24 90.9
MsG0580025750.01.T01 MTR_5g076370 64.384 73 26 0 1 73 267 339 8.68e-23 92.4
MsG0580025750.01.T01 MTR_5g076505 61.333 75 29 0 1 75 240 314 9.52e-23 92.0
MsG0580025750.01.T01 MTR_2g038430 61.333 75 29 0 1 75 268 342 9.75e-23 92.4
MsG0580025750.01.T01 MTR_5g076720 65.333 75 26 0 1 75 315 389 4.33e-22 90.9
MsG0580025750.01.T01 MTR_1g046650 57.895 76 32 0 1 76 171 246 4.75e-22 89.0
MsG0580025750.01.T01 MTR_1g046650 57.895 76 32 0 1 76 240 315 7.77e-22 89.4
MsG0580025750.01.T01 MTR_1g046650 57.895 76 32 0 1 76 240 315 8.88e-22 89.4
MsG0580025750.01.T01 MTR_1g046650 57.895 76 32 0 1 76 271 346 1.37e-21 89.4
MsG0580025750.01.T01 MTR_5g076740 59.211 76 30 1 1 75 86 161 2.11e-21 85.1
MsG0580025750.01.T01 MTR_2g038420 60.000 75 30 0 1 75 260 334 3.23e-21 88.2
MsG0580025750.01.T01 MTR_7g094390 58.667 75 31 0 1 75 402 476 6.64e-20 85.5
MsG0580025750.01.T01 MTR_5g076520 57.333 75 31 1 1 74 244 318 1.13e-18 80.9
MsG0580025750.01.T01 MTR_7g024290 60.526 76 29 1 1 75 241 316 2.41e-18 80.1
MsG0580025750.01.T01 MTR_5g061290 53.333 75 35 0 1 75 252 326 1.50e-17 78.2
MsG0580025750.01.T01 MTR_4g009980 55.224 67 30 0 9 75 4 70 1.78e-17 72.4
MsG0580025750.01.T01 MTR_5g076350 48.684 76 38 1 1 75 8 83 3.55e-15 67.0
MsG0580025750.01.T01 MTR_5g076760 58.621 58 24 0 10 67 4 61 8.72e-15 65.9
MsG0580025750.01.T01 MTR_5g076780 58.333 60 25 0 15 74 4 63 9.55e-15 65.5
MsG0580025750.01.T01 MTR_5g076340 50.649 77 36 2 1 75 9 85 2.42e-14 64.7
MsG0580025750.01.T01 MTR_4g080783 41.176 85 46 1 44 124 7 91 2.63e-12 59.7
MsG0580025750.01.T01 MTR_4g070200 56.140 57 21 2 45 101 17 69 9.06e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025750.01.T01 AT2G47110 96.129 155 6 0 1 155 1 155 1.13e-108 306
MsG0580025750.01.T01 AT2G47110 96.129 155 6 0 1 155 1 155 1.13e-108 306
MsG0580025750.01.T01 AT3G62250 96.711 152 5 0 1 152 1 152 5.78e-108 304
MsG0580025750.01.T01 AT1G23410 92.208 154 12 0 1 154 1 154 5.96e-92 264
MsG0580025750.01.T01 AT3G52590 100.000 76 0 0 1 76 1 76 2.08e-49 155
MsG0580025750.01.T01 AT2G36170 100.000 76 0 0 1 76 1 76 2.08e-49 155
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 2.83e-49 155
MsG0580025750.01.T01 AT4G05050 100.000 76 0 0 1 76 77 152 3.37e-49 155
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 2.83e-49 155
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 77 152 3.37e-49 155
MsG0580025750.01.T01 AT2G35635 98.701 77 1 0 1 77 1 77 3.22e-49 155
MsG0580025750.01.T01 AT2G35635 62.162 74 28 0 3 76 79 152 1.77e-25 95.5
MsG0580025750.01.T01 AT1G31340 98.701 77 1 0 1 77 1 77 5.08e-49 155
MsG0580025750.01.T01 AT1G31340 63.514 74 27 0 3 76 79 152 1.49e-26 98.2
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 2.38e-48 156
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 77 154 2.38e-48 156
MsG0580025750.01.T01 AT4G05050 100.000 76 0 0 1 76 153 228 2.80e-48 155
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 2.38e-48 156
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 77 154 2.38e-48 156
MsG0580025750.01.T01 AT4G05050 100.000 76 0 0 1 76 153 228 2.80e-48 155
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 2.38e-48 156
MsG0580025750.01.T01 AT4G05050 97.436 78 2 0 1 78 77 154 2.38e-48 156
MsG0580025750.01.T01 AT4G05050 100.000 76 0 0 1 76 153 228 2.80e-48 155
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 2.38e-48 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 2.38e-48 156
MsG0580025750.01.T01 AT4G02890 100.000 76 0 0 1 76 153 228 2.80e-48 155
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 2.38e-48 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 2.38e-48 156
MsG0580025750.01.T01 AT4G02890 100.000 76 0 0 1 76 153 228 2.80e-48 155
MsG0580025750.01.T01 AT1G55060 96.154 78 3 0 1 78 77 154 7.67e-48 154
MsG0580025750.01.T01 AT1G55060 96.104 77 3 0 1 77 153 229 6.87e-46 149
MsG0580025750.01.T01 AT1G55060 84.615 78 12 0 1 78 1 78 1.38e-41 139
MsG0580025750.01.T01 AT5G03240 98.701 77 1 0 1 77 229 305 8.68e-48 157
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 1 78 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 77 154 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 153 230 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 98.701 77 1 0 1 77 229 305 8.68e-48 157
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 1 78 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 77 154 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 153 230 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 98.701 77 1 0 1 77 229 305 8.68e-48 157
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 1 78 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 77 154 1.35e-47 156
MsG0580025750.01.T01 AT5G03240 97.436 78 2 0 1 78 153 230 1.35e-47 156
MsG0580025750.01.T01 AT5G20620 98.701 77 1 0 1 77 229 305 8.68e-48 157
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 1 78 1.35e-47 156
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 77 154 1.35e-47 156
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 153 230 1.35e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 1.55e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 1.55e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 1.55e-47 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 229 304 1.82e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 1.55e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 1.55e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 1.55e-47 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 229 304 1.82e-47 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 1.55e-47 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 1.55e-47 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 153 230 1.55e-47 156
MsG0580025750.01.T01 AT4G02890 100.000 76 0 0 1 76 229 304 1.82e-47 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 1.55e-47 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 1.55e-47 156
MsG0580025750.01.T01 AT4G02890 97.436 78 2 0 1 78 153 230 1.55e-47 156
MsG0580025750.01.T01 AT4G02890 100.000 76 0 0 1 76 229 304 1.82e-47 156
MsG0580025750.01.T01 AT1G65350 97.436 78 2 0 1 78 1 78 2.75e-47 156
MsG0580025750.01.T01 AT1G65350 96.154 78 3 0 1 78 152 229 3.79e-46 153
MsG0580025750.01.T01 AT1G65350 96.154 78 2 1 1 78 77 153 2.48e-44 148
MsG0580025750.01.T01 AT1G65350 79.121 91 5 1 1 77 228 318 1.21e-38 134
MsG0580025750.01.T01 AT5G20620 98.701 77 1 0 1 77 305 381 4.79e-47 157
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 1 78 7.42e-47 156
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 77 154 7.42e-47 156
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 153 230 7.42e-47 156
MsG0580025750.01.T01 AT5G20620 97.436 78 2 0 1 78 229 306 7.42e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 305 380 1.11e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 305 380 1.11e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 9.49e-47 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 305 380 1.11e-46 156
MsG0580025750.01.T01 AT5G37640 94.872 78 4 0 1 78 79 156 2.46e-46 153
MsG0580025750.01.T01 AT5G37640 91.026 78 7 0 1 78 155 232 2.36e-42 143
MsG0580025750.01.T01 AT5G37640 92.208 77 5 1 1 76 231 307 3.65e-40 137
MsG0580025750.01.T01 AT5G37640 76.923 78 18 0 1 78 3 80 1.36e-33 120
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 305 382 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 381 456 4.44e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 97.436 78 2 0 1 78 305 382 3.75e-46 156
MsG0580025750.01.T01 AT4G05320 100.000 76 0 0 1 76 381 456 4.44e-46 156
MsG0580025750.01.T01 AT3G09790 91.026 78 7 0 1 78 79 156 1.62e-39 140
MsG0580025750.01.T01 AT3G09790 83.333 78 13 0 1 78 3 80 4.89e-36 131
MsG0580025750.01.T01 AT3G09790 79.730 74 15 0 1 74 552 625 1.33e-30 116
MsG0580025750.01.T01 AT3G09790 69.231 78 24 0 1 78 393 470 1.02e-27 107
MsG0580025750.01.T01 AT3G09790 73.684 76 18 1 1 74 319 394 9.53e-27 105
MsG0580025750.01.T01 AT3G09790 68.675 83 21 1 1 78 238 320 4.65e-26 103
MsG0580025750.01.T01 AT3G09790 67.073 82 20 2 1 75 155 236 1.19e-25 102
MsG0580025750.01.T01 AT3G09790 64.706 85 23 1 1 78 469 553 1.26e-24 99.4
MsG0580025750.01.T01 AT3G09790 91.026 78 7 0 1 78 79 156 1.62e-39 140
MsG0580025750.01.T01 AT3G09790 83.333 78 13 0 1 78 3 80 4.89e-36 131
MsG0580025750.01.T01 AT3G09790 79.730 74 15 0 1 74 552 625 1.33e-30 116
MsG0580025750.01.T01 AT3G09790 69.231 78 24 0 1 78 393 470 1.02e-27 107
MsG0580025750.01.T01 AT3G09790 73.684 76 18 1 1 74 319 394 9.53e-27 105
MsG0580025750.01.T01 AT3G09790 68.675 83 21 1 1 78 238 320 4.65e-26 103
MsG0580025750.01.T01 AT3G09790 67.073 82 20 2 1 75 155 236 1.19e-25 102
MsG0580025750.01.T01 AT3G09790 64.706 85 23 1 1 78 469 553 1.26e-24 99.4
MsG0580025750.01.T01 AT1G53930 75.342 73 18 0 1 73 86 158 1.24e-32 114
MsG0580025750.01.T01 AT1G53950 61.972 71 27 0 1 71 69 139 1.26e-24 92.8
MsG0580025750.01.T01 AT1G11980 55.263 76 34 0 1 76 1 76 6.54e-24 89.4
MsG0580025750.01.T01 AT1G53945 44.286 70 39 0 1 70 46 115 2.50e-12 60.5
MsG0580025750.01.T01 AT5G42220 38.889 72 44 0 1 72 24 95 3.96e-12 63.5
MsG0580025750.01.T01 AT5G42220 38.889 72 44 0 1 72 24 95 3.96e-12 63.5
MsG0580025750.01.T01 AT4G12570 38.667 75 45 1 1 74 95 169 7.25e-12 62.8

Find 39 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATGCTTAATCTTCTT+TGG 0.193749 5:-23700740 None:intergenic
GATGAAGAGTTGATTCCTTC+TGG 0.292372 5:-23700661 None:intergenic
TCCTTCCTTATCCTGGATCT+TGG 0.307363 5:-23700561 None:intergenic
ATCTTCGTGAAAACCCTAAC+AGG 0.342406 5:+23700485 MsG0580025750.01.T01:CDS
GTGGGATTCCTTCCTTATCC+TGG 0.353812 5:-23700568 None:intergenic
CCAGCACCACACTCAGCATT+TGG 0.374703 5:-23700842 None:intergenic
TTTATAAGGTTGATGATTCT+GGG 0.414191 5:+23700792 MsG0580025750.01.T01:CDS
AAGATGAGACGTTGTTGATC+TGG 0.453739 5:-23700590 None:intergenic
CCAAATGCTGAGTGTGGTGC+TGG 0.460209 5:+23700842 MsG0580025750.01.T01:CDS
GTGTGGTGCTGGAACTTTCA+TGG 0.464899 5:+23700853 MsG0580025750.01.T01:CDS
AATCTTCTTTGGCTTAGTGT+AGG 0.476671 5:-23700729 None:intergenic
CTTGGCTTTCACATTGTCGA+TGG 0.487814 5:-23700543 None:intergenic
TCCTCTTCTTCGCGCCACCA+CGG 0.511059 5:-23700697 None:intergenic
GAAAGCCAAGATCCAGGATA+AGG 0.514154 5:+23700556 MsG0580025750.01.T01:CDS
TTCCTTCTGGATGTTGTAGT+CGG 0.515288 5:-23700648 None:intergenic
CTGGGAAGGTGCAGAGGCTG+AGG 0.516022 5:+23700810 MsG0580025750.01.T01:CDS
TCCGTGGTGGCGCGAAGAAG+AGG 0.530944 5:+23700696 MsG0580025750.01.T01:CDS
CAATGTGAAAGCCAAGATCC+AGG 0.546832 5:+23700550 MsG0580025750.01.T01:CDS
GTCTGAAGATTCAACTTCGA+GGG 0.549043 5:-23700519 None:intergenic
TCTTCGCGCCACCACGGAGA+CGG 0.552813 5:-23700691 None:intergenic
GCCGGAAAACAGCTCGAAGA+CGG 0.555312 5:+23700614 MsG0580025750.01.T01:CDS
TAAGGTTGATGATTCTGGGA+AGG 0.571726 5:+23700796 MsG0580025750.01.T01:CDS
TGTCTGAAGATTCAACTTCG+AGG 0.572197 5:-23700520 None:intergenic
CGTCATTATTGTGGGAAATG+TGG 0.573413 5:+23700890 MsG0580025750.01.T01:CDS
CAACAACGTCTCATCTTCGC+CGG 0.583325 5:+23700596 MsG0580025750.01.T01:CDS
AGAAGATTAAGCATAAGCAT+AGG 0.593970 5:+23700744 MsG0580025750.01.T01:CDS
CTCGTTCTCCGTCTCCGTGG+TGG 0.595542 5:+23700683 MsG0580025750.01.T01:CDS
ATCAGCTTTCTGATAAACAT+AGG 0.600943 5:-23700918 None:intergenic
GATTAAGCATAAGCATAGGA+AGG 0.601776 5:+23700748 MsG0580025750.01.T01:CDS
GAAGGTGCAGAGGCTGAGGA+AGG 0.602387 5:+23700814 MsG0580025750.01.T01:CDS
GCCAAGATCCAGGATAAGGA+AGG 0.608413 5:+23700560 MsG0580025750.01.T01:CDS
ATGAGACGTTGTTGATCTGG+TGG 0.612121 5:-23700587 None:intergenic
TGTTGTAGTCGGCGAGAGTG+CGG 0.616851 5:-23700637 None:intergenic
ATGATTCTGGGAAGGTGCAG+AGG 0.626218 5:+23700804 MsG0580025750.01.T01:CDS
CGCCGACTACAACATCCAGA+AGG 0.634733 5:+23700646 MsG0580025750.01.T01:CDS
TGAGACGTTGTTGATCTGGT+GGG 0.664129 5:-23700586 None:intergenic
CATCTCGTTCTCCGTCTCCG+TGG 0.672511 5:+23700680 MsG0580025750.01.T01:CDS
TCTTCGTGAAAACCCTAACA+GGG 0.705571 5:+23700486 MsG0580025750.01.T01:CDS
GAGTGTCCAAATGCTGAGTG+TGG 0.711612 5:+23700836 MsG0580025750.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATCGTCATTATTGT+GGG + Chr5:23700882-23700901 MsG0580025750.01.T01:CDS 25.0%
!!! TTTATAAGGTTGATGATTCT+GGG + Chr5:23700792-23700811 MsG0580025750.01.T01:CDS 25.0%
!!! TTTTATAAGGTTGATGATTC+TGG + Chr5:23700791-23700810 MsG0580025750.01.T01:CDS 25.0%
AGAAGATTAAGCATAAGCAT+AGG + Chr5:23700744-23700763 MsG0580025750.01.T01:CDS 30.0%
ATCAGCTTTCTGATAAACAT+AGG - Chr5:23700921-23700940 None:intergenic 30.0%
TGCTTATGCTTAATCTTCTT+TGG - Chr5:23700743-23700762 None:intergenic 30.0%
!! CATTTTGATCGTCATTATTG+TGG + Chr5:23700881-23700900 MsG0580025750.01.T01:CDS 30.0%
GATTAAGCATAAGCATAGGA+AGG + Chr5:23700748-23700767 MsG0580025750.01.T01:CDS 35.0%
! AATCTTCTTTGGCTTAGTGT+AGG - Chr5:23700732-23700751 None:intergenic 35.0%
! GGTTATTGTTTTCCCTGTTA+GGG - Chr5:23700501-23700520 None:intergenic 35.0%
!! TGCTGTGTTGCAGTTTTATA+AGG + Chr5:23700778-23700797 MsG0580025750.01.T01:CDS 35.0%
AAGATGAGACGTTGTTGATC+TGG - Chr5:23700593-23700612 None:intergenic 40.0%
ATCTTCGTGAAAACCCTAAC+AGG + Chr5:23700485-23700504 MsG0580025750.01.T01:CDS 40.0%
CGTCATTATTGTGGGAAATG+TGG + Chr5:23700890-23700909 MsG0580025750.01.T01:CDS 40.0%
GTCTGAAGATTCAACTTCGA+GGG - Chr5:23700522-23700541 None:intergenic 40.0%
TCTTCGTGAAAACCCTAACA+GGG + Chr5:23700486-23700505 MsG0580025750.01.T01:CDS 40.0%
TGTCTGAAGATTCAACTTCG+AGG - Chr5:23700523-23700542 None:intergenic 40.0%
TTCCTTCTGGATGTTGTAGT+CGG - Chr5:23700651-23700670 None:intergenic 40.0%
! GATGAAGAGTTGATTCCTTC+TGG - Chr5:23700664-23700683 None:intergenic 40.0%
! GGGTTATTGTTTTCCCTGTT+AGG - Chr5:23700502-23700521 None:intergenic 40.0%
!! TAAGGTTGATGATTCTGGGA+AGG + Chr5:23700796-23700815 MsG0580025750.01.T01:CDS 40.0%
ATGAGACGTTGTTGATCTGG+TGG - Chr5:23700590-23700609 None:intergenic 45.0%
CAATGTGAAAGCCAAGATCC+AGG + Chr5:23700550-23700569 MsG0580025750.01.T01:CDS 45.0%
GAAAGCCAAGATCCAGGATA+AGG + Chr5:23700556-23700575 MsG0580025750.01.T01:CDS 45.0%
TCCTTCCTTATCCTGGATCT+TGG - Chr5:23700564-23700583 None:intergenic 45.0%
TGAGACGTTGTTGATCTGGT+GGG - Chr5:23700589-23700608 None:intergenic 45.0%
! CTTGGCTTTCACATTGTCGA+TGG - Chr5:23700546-23700565 None:intergenic 45.0%
CAACAACGTCTCATCTTCGC+CGG + Chr5:23700596-23700615 MsG0580025750.01.T01:CDS 50.0%
GAGTGTCCAAATGCTGAGTG+TGG + Chr5:23700836-23700855 MsG0580025750.01.T01:CDS 50.0%
GCCAAGATCCAGGATAAGGA+AGG + Chr5:23700560-23700579 MsG0580025750.01.T01:CDS 50.0%
GTGGGATTCCTTCCTTATCC+TGG - Chr5:23700571-23700590 None:intergenic 50.0%
! ATGATTCTGGGAAGGTGCAG+AGG + Chr5:23700804-23700823 MsG0580025750.01.T01:CDS 50.0%
! GTGTGGTGCTGGAACTTTCA+TGG + Chr5:23700853-23700872 MsG0580025750.01.T01:CDS 50.0%
CCAAATGCTGAGTGTGGTGC+TGG + Chr5:23700842-23700861 MsG0580025750.01.T01:CDS 55.0%
CCAGCACCACACTCAGCATT+TGG - Chr5:23700845-23700864 None:intergenic 55.0%
GCCGGAAAACAGCTCGAAGA+CGG + Chr5:23700614-23700633 MsG0580025750.01.T01:CDS 55.0%
TGTTGTAGTCGGCGAGAGTG+CGG - Chr5:23700640-23700659 None:intergenic 55.0%
! CGCCGACTACAACATCCAGA+AGG + Chr5:23700646-23700665 MsG0580025750.01.T01:CDS 55.0%
!! GCCGTCTTCGAGCTGTTTTC+CGG - Chr5:23700618-23700637 None:intergenic 55.0%
CATCTCGTTCTCCGTCTCCG+TGG + Chr5:23700680-23700699 MsG0580025750.01.T01:CDS 60.0%
TCCTCTTCTTCGCGCCACCA+CGG - Chr5:23700700-23700719 None:intergenic 60.0%
! GAAGGTGCAGAGGCTGAGGA+AGG + Chr5:23700814-23700833 MsG0580025750.01.T01:CDS 60.0%
CTCGTTCTCCGTCTCCGTGG+TGG + Chr5:23700683-23700702 MsG0580025750.01.T01:CDS 65.0%
TCTTCGCGCCACCACGGAGA+CGG - Chr5:23700694-23700713 None:intergenic 65.0%
! CTGGGAAGGTGCAGAGGCTG+AGG + Chr5:23700810-23700829 MsG0580025750.01.T01:CDS 65.0%
! TCCGTGGTGGCGCGAAGAAG+AGG + Chr5:23700696-23700715 MsG0580025750.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 23700479 23700946 23700479 ID=MsG0580025750.01;Name=MsG0580025750.01
Chr5 mRNA 23700479 23700946 23700479 ID=MsG0580025750.01.T01;Parent=MsG0580025750.01;Name=MsG0580025750.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|155
Chr5 exon 23700479 23700946 23700479 ID=MsG0580025750.01.T01:exon:4441;Parent=MsG0580025750.01.T01
Chr5 CDS 23700479 23700946 23700479 ID=MsG0580025750.01.T01:cds;Parent=MsG0580025750.01.T01
Gene Sequence

>MsG0580025750.01.T01

ATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACAATAACCCTCGAAGTTGAATCTTCAGACACCATCGACAATGTGAAAGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGATCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACTCTCGCCGACTACAACATCCAGAAGGAATCAACTCTTCATCTCGTTCTCCGTCTCCGTGGTGGCGCGAAGAAGAGGAAGAAGAAGACCTACACTAAGCCAAAGAAGATTAAGCATAAGCATAGGAAGGTGAAGCTTGCTGTGTTGCAGTTTTATAAGGTTGATGATTCTGGGAAGGTGCAGAGGCTGAGGAAGGAGTGTCCAAATGCTGAGTGTGGTGCTGGAACTTTCATGGCGAATCATTTTGATCGTCATTATTGTGGGAAATGTGGTTTGACCTATGTTTATCAGAAAGCTGATGCTTGA

Protein sequence

>MsG0580025750.01.T01

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA*