AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041058.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041058.01.T01 MTR_7g103320 95.210 167 4 1 196 362 1 163 2.18e-108 314
MsG0780041058.01.T01 MTR_7g103320 100.000 133 0 0 50 182 30 162 1.06e-88 264
MsG0780041058.01.T01 MTR_7g103320 95.210 167 4 1 196 362 1 163 2.18e-108 314
MsG0780041058.01.T01 MTR_7g103320 100.000 133 0 0 50 182 30 162 1.06e-88 264
MsG0780041058.01.T01 MTR_7g103320 95.210 167 4 1 196 362 1 163 2.18e-108 314
MsG0780041058.01.T01 MTR_7g103320 100.000 133 0 0 50 182 30 162 1.06e-88 264
MsG0780041058.01.T01 MTR_1g061670 90.260 154 10 2 196 348 1 150 5.40e-81 244
MsG0780041058.01.T01 MTR_1g061670 94.215 121 6 1 50 169 30 150 4.47e-62 196
MsG0780041058.01.T01 MTR_4g104930 79.630 54 10 1 63 116 13 65 1.13e-21 87.8
MsG0780041058.01.T01 MTR_4g104930 79.630 54 10 1 238 291 13 65 1.13e-21 87.8
MsG0780041058.01.T01 MTR_4g055270 39.130 92 54 1 201 290 4 95 1.02e-16 77.0
MsG0780041058.01.T01 MTR_2g084925 36.667 90 55 1 201 288 4 93 2.64e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041058.01.T01 AT2G36620 85.093 161 19 2 196 355 1 157 3.48e-80 243
MsG0780041058.01.T01 AT2G36620 87.500 128 15 1 50 176 30 157 1.79e-61 195
MsG0780041058.01.T01 AT3G53020 85.621 153 17 2 196 348 1 148 9.39e-76 231
MsG0780041058.01.T01 AT3G53020 88.333 120 13 1 50 169 30 148 6.57e-57 183
MsG0780041058.01.T01 AT2G44860 40.426 94 50 2 201 290 4 95 3.61e-16 75.5
MsG0780041058.01.T01 AT2G44860 40.426 94 50 2 201 290 4 95 3.61e-16 75.5

Find 108 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCTACTTCGGCTTTCT+TGG 0.236901 7:-85958744 None:intergenic
AGATGCTACCTCGGCTTTCT+TGG 0.251083 7:-85963526 None:intergenic
CCTAAAATGGGCGGTGGTGG+TGG 0.259183 7:+85958821 MsG0780041058.01.T01:CDS
CCTAAAATGGGCGGTGGTGG+CGG 0.273790 7:+85963603 MsG0780041058.01.T01:CDS
TATGCCCAAGGGTCCTAAAA+TGG 0.286938 7:+85958808 MsG0780041058.01.T01:CDS
TATGCCCAAGGGTCCTAAAA+TGG 0.286938 7:+85963590 MsG0780041058.01.T01:CDS
CTTGGCTTTCTTCTCATCCT+TGG 0.290844 7:-85958726 None:intergenic
ATCTCGAACCTCGGGCTTCT+CGG 0.307520 7:-85958459 None:intergenic
ATCTCGAACCTCGGGCTTCT+CGG 0.307520 7:-85963162 None:intergenic
CTTGTGCTGCTTTCTGTACA+TGG 0.329814 7:-85958102 None:intergenic
CTTGTGCTGCTTTCTGTACA+TGG 0.329814 7:-85962805 None:intergenic
GGACCTGGAGTATGGCTTCT+TGG 0.357806 7:-85958396 None:intergenic
GGACCTGGAGTATGGCTTCT+TGG 0.357806 7:-85963099 None:intergenic
GCAGTCCATGTGAGCTTTGA+AGG 0.357906 7:-85958080 None:intergenic
GCAGTCCATGTGAGCTTTGA+AGG 0.357906 7:-85962783 None:intergenic
GAAAGCCGAAGTAGCATCTA+AGG 0.360444 7:+85958748 MsG0780041058.01.T01:CDS
GAAAGCCGAGGTAGCATCTA+AGG 0.361381 7:+85963530 MsG0780041058.01.T01:CDS
CCTCTCCTTGATTTCACTGC+AGG 0.386986 7:-85963475 None:intergenic
CTCAAGAAGCGGTGAAGAAA+AGG 0.395866 7:+85963066 MsG0780041058.01.T01:CDS
ATAAATCTGATCCCTCTTCC+TGG 0.395884 7:-85957849 None:intergenic
ATAAATCTGATCCCTCTTCC+TGG 0.395884 7:-85962551 None:intergenic
GCATCTAAGGCACAAAAGTC+AGG 0.405098 7:+85958761 MsG0780041058.01.T01:CDS
GCATCTAAGGCACAAAAGTC+AGG 0.405098 7:+85963543 MsG0780041058.01.T01:CDS
GACAGAGTTCAGTTCTGAAA+TGG 0.406387 7:-85957803 None:intergenic
CTAAAATGGGCGGTGGTGGC+GGG 0.411135 7:+85963604 MsG0780041058.01.T01:CDS
CCAACAATGGACCTGGAGTA+TGG 0.414209 7:-85958404 None:intergenic
CCAACAATGGACCTGGAGTA+TGG 0.414209 7:-85963107 None:intergenic
GGTCCTAAAATGGGCGGTGG+TGG 0.415686 7:+85963600 MsG0780041058.01.T01:CDS
ATTTATTCGTAGTGATTCTC+AGG 0.428494 7:+85957866 MsG0780041058.01.T01:CDS
ATTTATTCGTAGTGATTCTC+AGG 0.428494 7:+85962568 MsG0780041058.01.T01:CDS
CCTAGCAGCATCTCGAACCT+CGG 0.438375 7:-85958468 None:intergenic
CCTAGCAGCATCTCGAACCT+CGG 0.438375 7:-85963171 None:intergenic
GGTCCTAAAATGGGCGGTGG+TGG 0.445895 7:+85958818 MsG0780041058.01.T01:CDS
TTGTGAACTCAAAATGTAAG+AGG 0.457107 7:+85958036 MsG0780041058.01.T01:CDS
TTGTGAACTCAAAATGTAAG+AGG 0.457107 7:+85962739 MsG0780041058.01.T01:CDS
TCAAAGATTTACCCAGGAAG+AGG 0.465260 7:+85962539 MsG0780041058.01.T01:CDS
TTGAAGGCTTCAACTTGTTG+TGG 0.467148 7:-85958064 None:intergenic
TTGAAGGCTTCAACTTGTTG+TGG 0.467148 7:-85962767 None:intergenic
GCAAAGATTTACCCAGGAAG+AGG 0.473275 7:+85957837 MsG0780041058.01.T01:CDS
ATGCCCAAGGGTCCTAAAAT+GGG 0.479062 7:+85958809 MsG0780041058.01.T01:CDS
ATGCCCAAGGGTCCTAAAAT+GGG 0.479062 7:+85963591 MsG0780041058.01.T01:CDS
CTGCTAGGGAAGCTGCTCTT+CGG 0.488937 7:+85958483 MsG0780041058.01.T01:CDS
CTGCTAGGGAAGCTGCTCTT+CGG 0.488937 7:+85963186 MsG0780041058.01.T01:CDS
CCATACTCCAGGTCCATTGT+TGG 0.499932 7:+85958404 MsG0780041058.01.T01:CDS
CCATACTCCAGGTCCATTGT+TGG 0.499932 7:+85963107 MsG0780041058.01.T01:CDS
TCAATCCTGCAGTGAAATCA+AGG 0.504323 7:+85963470 MsG0780041058.01.T01:CDS
TCAATCCCGCAGTGAAATCA+AGG 0.506619 7:+85958688 MsG0780041058.01.T01:intron
CTAGCAGCATCTCGAACCTC+GGG 0.515819 7:-85958467 None:intergenic
CTAGCAGCATCTCGAACCTC+GGG 0.515819 7:-85963170 None:intergenic
CTAAAATGGGCGGTGGTGGT+GGG 0.525722 7:+85958822 MsG0780041058.01.T01:CDS
CCGAGGTTCGAGATGCTGCT+AGG 0.531808 7:+85958468 MsG0780041058.01.T01:CDS
CCGAGGTTCGAGATGCTGCT+AGG 0.531808 7:+85963171 MsG0780041058.01.T01:CDS
CTCAAGAAGCGGTGAAGAAG+AGG 0.534219 7:+85958363 MsG0780041058.01.T01:CDS
CGAGGTTCGAGATGCTGCTA+GGG 0.538000 7:+85958469 MsG0780041058.01.T01:CDS
CGAGGTTCGAGATGCTGCTA+GGG 0.538000 7:+85963172 MsG0780041058.01.T01:CDS
TTGTGCCTTAGATGCTACTT+CGG 0.538791 7:-85958753 None:intergenic
AGGGAAAGGCAATGTTCAGA+AGG 0.551183 7:+85958781 MsG0780041058.01.T01:CDS
CCTGGAGTATGGCTTCTTGG+TGG 0.554085 7:-85958393 None:intergenic
CCTGGAGTATGGCTTCTTGG+TGG 0.554085 7:-85963096 None:intergenic
TAAATCTGATCCCTCTTCCT+GGG 0.554260 7:-85957848 None:intergenic
TAAATCTGATCCCTCTTCCT+GGG 0.554260 7:-85962550 None:intergenic
TGAAGCCTTCAAAGCTCACA+TGG 0.563280 7:+85958075 MsG0780041058.01.T01:CDS
TGAAGCCTTCAAAGCTCACA+TGG 0.563280 7:+85962778 MsG0780041058.01.T01:CDS
AAGATTGAAAATATGTGCGA+CGG 0.567047 7:+85959463 MsG0780041058.01.T01:CDS
GAATTTATTGCGCCCTTGTG+TGG 0.569442 7:+85957759 MsG0780041058.01.T01:CDS
AGATTGAAAATATGTGCGAC+GGG 0.572143 7:+85959464 MsG0780041058.01.T01:CDS
TTGTGCCTTAGATGCTACCT+CGG 0.575585 7:-85963535 None:intergenic
AGGGAAGGGAAATGTTCAGA+AGG 0.577296 7:+85963563 MsG0780041058.01.T01:CDS
TTCAAGTGTAGCACCAACAA+TGG 0.581573 7:-85958417 None:intergenic
TTCAAGTGTAGCACCAACAA+TGG 0.581573 7:-85963120 None:intergenic
AAGGGTCCTAAAATGGGCGG+TGG 0.584819 7:+85958815 MsG0780041058.01.T01:CDS
AAGGGTCCTAAAATGGGCGG+TGG 0.584819 7:+85963597 MsG0780041058.01.T01:CDS
TCAGAAGGGTGCTATGCCCA+AGG 0.589737 7:+85958796 MsG0780041058.01.T01:CDS
TCAGAAGGGTGCTATGCCCA+AGG 0.589737 7:+85963578 MsG0780041058.01.T01:CDS
TAAGGCACAAAAGTCAGGGA+AGG 0.594983 7:+85963548 MsG0780041058.01.T01:CDS
CAAAGATTTACCCAGGAAGA+GGG 0.595056 7:+85957838 MsG0780041058.01.T01:CDS
CAAAGATTTACCCAGGAAGA+GGG 0.595056 7:+85962540 MsG0780041058.01.T01:CDS
ACTGAACTCTGTCGATTCAG+TGG 0.599671 7:+85957813 MsG0780041058.01.T01:CDS
ACTGAACTCTGTCGATTCAG+TGG 0.599671 7:+85962515 MsG0780041058.01.T01:CDS
CCACCAAGAAGCCATACTCC+AGG 0.600767 7:+85958393 MsG0780041058.01.T01:CDS
CCACCAAGAAGCCATACTCC+AGG 0.600767 7:+85963096 MsG0780041058.01.T01:CDS
AAGGCACAAAAGTCAGGGAA+AGG 0.600921 7:+85958767 MsG0780041058.01.T01:CDS
CAGAAGGGTGCTATGCCCAA+GGG 0.602938 7:+85958797 MsG0780041058.01.T01:CDS
CAGAAGGGTGCTATGCCCAA+GGG 0.602938 7:+85963579 MsG0780041058.01.T01:CDS
AGTATGGCTTCTTGGTGGCA+CGG 0.604625 7:-85958388 None:intergenic
AGTATGGCTTCTTGGTGGCA+CGG 0.604625 7:-85963091 None:intergenic
CATCTAAGGCACAAAAGTCA+GGG 0.612277 7:+85958762 MsG0780041058.01.T01:CDS
CATCTAAGGCACAAAAGTCA+GGG 0.612277 7:+85963544 MsG0780041058.01.T01:CDS
TGTAGCACCAACAATGGACC+TGG 0.616016 7:-85958411 None:intergenic
TGTAGCACCAACAATGGACC+TGG 0.616016 7:-85963114 None:intergenic
AAGGCACAAAAGTCAGGGAA+GGG 0.622311 7:+85963549 MsG0780041058.01.T01:CDS
AGTGGCTCAAAGATTTACCC+AGG 0.630927 7:+85962533 MsG0780041058.01.T01:CDS
GAAAAGAACCGAGAAGCCCG+AGG 0.642434 7:+85958451 MsG0780041058.01.T01:CDS
GAAAAGAACCGAGAAGCCCG+AGG 0.642434 7:+85963154 MsG0780041058.01.T01:CDS
AGTGGCGCAAAGATTTACCC+AGG 0.643624 7:+85957831 MsG0780041058.01.T01:CDS
GCAGGACATTGCTCAAGAAG+CGG 0.647206 7:+85963055 MsG0780041058.01.T01:intron
GTACAGAAAGCAGCACAAGA+AGG 0.650232 7:+85958106 MsG0780041058.01.T01:CDS
GTACAGAAAGCAGCACAAGA+AGG 0.650232 7:+85962809 MsG0780041058.01.T01:CDS
CCCAAGGGTCCTAAAATGGG+CGG 0.653433 7:+85958812 MsG0780041058.01.T01:CDS
CCCAAGGGTCCTAAAATGGG+CGG 0.653433 7:+85963594 MsG0780041058.01.T01:CDS
GGGAAGGGAAATGTTCAGAA+GGG 0.653491 7:+85963564 MsG0780041058.01.T01:CDS
GGGAAAGGCAATGTTCAGAA+GGG 0.656870 7:+85958782 MsG0780041058.01.T01:CDS
GCAGGACATTGCTCAAGAAG+CGG 0.663218 7:+85958352 MsG0780041058.01.T01:intron
AAAGAAAGCCAAGAAAGCCG+AGG 0.666450 7:+85963518 MsG0780041058.01.T01:CDS
CCCGCAGTGAAATCAAGGAG+AGG 0.678239 7:+85958693 MsG0780041058.01.T01:intron
GGAGAGGATAAAGAAAACCA+AGG 0.682479 7:+85958709 MsG0780041058.01.T01:CDS
GGAGAGGATAAAGAAAACCA+AGG 0.682479 7:+85963491 MsG0780041058.01.T01:CDS
CCTGCAGTGAAATCAAGGAG+AGG 0.683831 7:+85963475 MsG0780041058.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+CGG + Chr7:85963245-85963264 MsG0780041058.01.T01:intron 0.0%
!! AATATATATATTAAGTCATT+CGG - Chr7:85960167-85960186 None:intergenic 10.0%
!!! TTTTTTTTTATTGTTTTTAC+AGG + Chr7:85962707-85962726 MsG0780041058.01.T01:intron 10.0%
!! AAAAACTTTAACTAAAGAAT+TGG + Chr7:85961383-85961402 MsG0780041058.01.T01:intron 15.0%
!! AAATTGATAAAACTATTGAA+AGG - Chr7:85961552-85961571 None:intergenic 15.0%
!! AATTTCGACAAAATATTATA+TGG - Chr7:85961597-85961616 None:intergenic 15.0%
!! ATATTTGTAATGATCTATAA+TGG - Chr7:85959801-85959820 None:intergenic 15.0%
!! ATTATTTACGAAATCAAATA+AGG - Chr7:85959844-85959863 None:intergenic 15.0%
!! CCATGAAAAAAAAAAAAAAA+AGG - Chr7:85958543-85958562 None:intergenic 15.0%
!! CTAAAAATTGAAATTACAAT+AGG - Chr7:85962285-85962304 None:intergenic 15.0%
!! GAAAACAAATTATATTTAGA+TGG - Chr7:85958876-85958895 None:intergenic 15.0%
!! TAAATTAAAAAATACACAAG+TGG + Chr7:85959885-85959904 MsG0780041058.01.T01:intron 15.0%
!! TTAAAACTATGATTGTAAAA+GGG + Chr7:85960755-85960774 MsG0780041058.01.T01:intron 15.0%
!! TTATTTACGAAATCAAATAA+GGG - Chr7:85959843-85959862 None:intergenic 15.0%
!!! ATCTTAGTTTTATTGATATA+AGG + Chr7:85957978-85957997 MsG0780041058.01.T01:intron 15.0%
!!! ATTTTGACTCTATTAAAAAA+AGG - Chr7:85960989-85961008 None:intergenic 15.0%
!!! CCTTTTTTTTTTTTTTTTCA+TGG + Chr7:85958540-85958559 MsG0780041058.01.T01:intron 15.0%
!!! GTTTTTTTTATTGTTTTTAC+AGG + Chr7:85958004-85958023 MsG0780041058.01.T01:intron 15.0%
!!! TATAAAAAACTTACCAATTT+TGG - Chr7:85960857-85960876 None:intergenic 15.0%
!!! TCAAAATTGCTATTTTTTTA+AGG + Chr7:85960792-85960811 MsG0780041058.01.T01:intron 15.0%
!!! TGTCAGTTTTATTTATTTTT+TGG + Chr7:85961620-85961639 MsG0780041058.01.T01:intron 15.0%
!!! TTAATGTCTAAAAATTTGTT+TGG + Chr7:85962104-85962123 MsG0780041058.01.T01:intron 15.0%
!!! TTGGTAAGTTTTTTATAAAA+AGG + Chr7:85960860-85960879 MsG0780041058.01.T01:intron 15.0%
!!! TTTAAAACTATGATTGTAAA+AGG + Chr7:85960754-85960773 MsG0780041058.01.T01:intron 15.0%
!!! TTTAAATAGAAATTTTGTCT+TGG - Chr7:85960926-85960945 None:intergenic 15.0%
!!! TTTTATTTATTTTTTGGTAC+AGG + Chr7:85961626-85961645 MsG0780041058.01.T01:intron 15.0%
!! AAATCAACCAAAAATATGAT+GGG - Chr7:85962199-85962218 None:intergenic 20.0%
!! AAGTATAATTCAATATAGAC+CGG + Chr7:85961804-85961823 MsG0780041058.01.T01:intron 20.0%
!! AATACTCATCCATAATTATT+TGG + Chr7:85961751-85961770 MsG0780041058.01.T01:intron 20.0%
!! ACACAATATAAATGAATGTT+TGG - Chr7:85959408-85959427 None:intergenic 20.0%
!! ATACTCATCCATAATTATTT+GGG + Chr7:85961752-85961771 MsG0780041058.01.T01:intron 20.0%
!! ATTGATTAATTAAACCTCTA+AGG + Chr7:85959526-85959545 MsG0780041058.01.T01:intron 20.0%
!! GAAAGTTAATAGGTAAAAAA+TGG + Chr7:85961020-85961039 MsG0780041058.01.T01:intron 20.0%
!! TAAAACTATGATTGTAAAAG+GGG + Chr7:85960756-85960775 MsG0780041058.01.T01:intron 20.0%
!! TAAATCAACCAAAAATATGA+TGG - Chr7:85962200-85962219 None:intergenic 20.0%
!! TATTTACGAAATCAAATAAG+GGG - Chr7:85959842-85959861 None:intergenic 20.0%
!! TGATAAAACAGTAACATAAA+AGG - Chr7:85958936-85958955 None:intergenic 20.0%
!! TGATTTCGTAAATAATTATG+TGG + Chr7:85959848-85959867 MsG0780041058.01.T01:intron 20.0%
!! TTAATTCTACTTATTATACC+TGG + Chr7:85961045-85961064 MsG0780041058.01.T01:intron 20.0%
!! TTACCAACAAAAATAAAAAG+TGG + Chr7:85959309-85959328 MsG0780041058.01.T01:intron 20.0%
!!! AACAAGTTTTGTTAAAAAAG+TGG - Chr7:85960543-85960562 None:intergenic 20.0%
!!! AAGTGTCATTTATATATCTT+AGG - Chr7:85960316-85960335 None:intergenic 20.0%
!!! ACAATCATAGTTTTAAAACT+CGG - Chr7:85960751-85960770 None:intergenic 20.0%
!!! AGCTTTTGATATTAGTTTTT+AGG + Chr7:85961887-85961906 MsG0780041058.01.T01:intron 20.0%
!!! ATAAATGACACTTTTTTCTT+AGG + Chr7:85960323-85960342 MsG0780041058.01.T01:intron 20.0%
!!! CTTGTTTTATTCTAAAACAA+AGG - Chr7:85961228-85961247 None:intergenic 20.0%
!!! GCTTTTGATATTAGTTTTTA+GGG + Chr7:85961888-85961907 MsG0780041058.01.T01:intron 20.0%
!!! GTAAACATAGTTTTAAAACT+CGG + Chr7:85959968-85959987 MsG0780041058.01.T01:intron 20.0%
!!! TAACCACTTTTTATTTTTGT+TGG - Chr7:85959315-85959334 None:intergenic 20.0%
!!! TAATTTCAATTTTTAGTGAG+TGG + Chr7:85962289-85962308 MsG0780041058.01.T01:intron 20.0%
!!! TGTTTTATCAAACTTATGTT+TGG + Chr7:85958946-85958965 MsG0780041058.01.T01:intron 20.0%
!!! TTGAAAATTAGACATGTTTT+TGG + Chr7:85962251-85962270 MsG0780041058.01.T01:intron 20.0%
!!! TTGACAAACAAAAAGTTTTA+TGG - Chr7:85961701-85961720 None:intergenic 20.0%
! AAAACAGTGATGAAATTACA+TGG - Chr7:85963380-85963399 None:intergenic 25.0%
! AAAACTATGATTGTAAAAGG+GGG + Chr7:85960757-85960776 MsG0780041058.01.T01:intron 25.0%
! AAAACTGAATGTGTAAATGA+TGG - Chr7:85961992-85962011 None:intergenic 25.0%
! AAACTAATATCAAAAGCTCT+TGG - Chr7:85961885-85961904 None:intergenic 25.0%
! ACAGTAAGTAGTAAAATTAC+TGG - Chr7:85958300-85958319 None:intergenic 25.0%
! ACCCAAATAAAAAAATTAGC+GGG - Chr7:85961524-85961543 None:intergenic 25.0%
! AGCAAAATCCATTTAATATC+TGG - Chr7:85958987-85959006 None:intergenic 25.0%
! AGTAGTAAAATTACTAGACA+AGG - Chr7:85958294-85958313 None:intergenic 25.0%
! AGTATAATTCAATATAGACC+GGG + Chr7:85961805-85961824 MsG0780041058.01.T01:intron 25.0%
! ATCAAGCAAACAAAATATCT+CGG - Chr7:85958910-85958929 None:intergenic 25.0%
! ATTAGTTAAGCAACCAAAAT+TGG + Chr7:85960841-85960860 MsG0780041058.01.T01:intron 25.0%
! CACCCAAATAAAAAAATTAG+CGG - Chr7:85961525-85961544 None:intergenic 25.0%
! CATATCTAATGTACTTCTAA+TGG - Chr7:85962350-85962369 None:intergenic 25.0%
! CATCATTGTCAATTTAACTA+TGG - Chr7:85961099-85961118 None:intergenic 25.0%
! GCAAAATCCATTTAATATCT+GGG - Chr7:85958986-85959005 None:intergenic 25.0%
! TACTCATCCATAATTATTTG+GGG + Chr7:85961753-85961772 MsG0780041058.01.T01:intron 25.0%
! TCAAATTCTTCAAAACTTGA+TGG + Chr7:85959207-85959226 MsG0780041058.01.T01:intron 25.0%
! TCTTACTACATAACAAACAA+TGG + Chr7:85961135-85961154 MsG0780041058.01.T01:intron 25.0%
!! ATTACTAACTTTTCCAAACA+AGG - Chr7:85962477-85962496 None:intergenic 25.0%
!! CATTTACACATTCAGTTTTA+GGG + Chr7:85961993-85962012 MsG0780041058.01.T01:intron 25.0%
!! GCGTTAAGTTTTTACATTTT+TGG + Chr7:85958847-85958866 MsG0780041058.01.T01:intron 25.0%
!! TCATTTACACATTCAGTTTT+AGG + Chr7:85961992-85962011 MsG0780041058.01.T01:intron 25.0%
!! TGTCATTTATATATCTTAGG+AGG - Chr7:85960313-85960332 None:intergenic 25.0%
!! TTACTAACTTTTCCAAACAA+GGG - Chr7:85962476-85962495 None:intergenic 25.0%
!! TTAGTTAGACTCTAAGAATA+TGG + Chr7:85959730-85959749 MsG0780041058.01.T01:intron 25.0%
!! TTCATTGAGAACTCTTTTTA+TGG + Chr7:85963316-85963335 MsG0780041058.01.T01:intron 25.0%
!! TTGAATGAATATCAGTTTTG+TGG + Chr7:85957938-85957957 MsG0780041058.01.T01:intron 25.0%
!!! ATTAATTAAACCTCTAAGGT+AGG + Chr7:85959530-85959549 MsG0780041058.01.T01:intron 25.0%
!!! GTAATTTCATCACTGTTTTT+TGG + Chr7:85963381-85963400 MsG0780041058.01.T01:intron 25.0%
!!! TAAAACTTACTTTAGAACCA+TGG - Chr7:85961954-85961973 None:intergenic 25.0%
!!! TGTGTAACTTTTAAGAATGT+TGG + Chr7:85962371-85962390 MsG0780041058.01.T01:intron 25.0%
!!! TTGTGTTGGTTAAAACATAA+TGG + Chr7:85959628-85959647 MsG0780041058.01.T01:intron 25.0%
!!! TTTTTTAGCACAAAGTTTTG+TGG + Chr7:85959055-85959074 MsG0780041058.01.T01:intron 25.0%
AAAAAAAGGTCTCAAAGAGT+CGG - Chr7:85958529-85958548 None:intergenic 30.0%
AAAAAAGACCTAACATAGCA+AGG - Chr7:85959041-85959060 None:intergenic 30.0%
AAAAAGACCTAACATAGCAA+GGG - Chr7:85959040-85959059 None:intergenic 30.0%
AAAGAGTCGGCATAATAAAA+AGG - Chr7:85958516-85958535 None:intergenic 30.0%
AAGATTGAAAATATGTGCGA+CGG + Chr7:85959463-85959482 MsG0780041058.01.T01:CDS 30.0%
AATGTAAATAGGTTCATGGA+TGG - Chr7:85958227-85958246 None:intergenic 30.0%
AATTGTGTAACAGGAAAAAC+AGG - Chr7:85963424-85963443 None:intergenic 30.0%
ACTCATCCATAATTATTTGG+GGG + Chr7:85961754-85961773 MsG0780041058.01.T01:intron 30.0%
AGTAGTAAAATTACTGGACA+AGG - Chr7:85962997-85963016 None:intergenic 30.0%
ATAGACCGGGTTATTTAAAA+TGG + Chr7:85961818-85961837 MsG0780041058.01.T01:intron 30.0%
ATTTATTCGTAGTGATTCTC+AGG + Chr7:85957866-85957885 MsG0780041058.01.T01:CDS 30.0%
CAAAATGCAATAACAGTGAA+TGG - Chr7:85962418-85962437 None:intergenic 30.0%
CAACAATGTAAATAGGTTCA+TGG - Chr7:85958231-85958250 None:intergenic 30.0%
CAAGGCTATCTAATAGAATT+AGG - Chr7:85958276-85958295 None:intergenic 30.0%
CATGTTCAGAAGCTTAATTT+AGG - Chr7:85958190-85958209 None:intergenic 30.0%
CCAAATAAAAAAATTAGCGG+GGG - Chr7:85961522-85961541 None:intergenic 30.0%
CCCAAATAAAAAAATTAGCG+GGG - Chr7:85961523-85961542 None:intergenic 30.0%
CTTCAAAATAGAGTAGGTAT+TGG + Chr7:85959574-85959593 MsG0780041058.01.T01:intron 30.0%
GAGATAAAAATGACTCATGT+TGG + Chr7:85957890-85957909 MsG0780041058.01.T01:intron 30.0%
GATGATCTTCAAAATAGAGT+AGG + Chr7:85959568-85959587 MsG0780041058.01.T01:intron 30.0%
GCAACTTCTTGAAAGTTAAT+AGG + Chr7:85961010-85961029 MsG0780041058.01.T01:intron 30.0%
GTAACCACAACAATGTAAAT+AGG - Chr7:85958238-85958257 None:intergenic 30.0%
GTCATCAATAATTGTGTAAC+AGG - Chr7:85963433-85963452 None:intergenic 30.0%
TGAACCTATTTACATTGTTG+TGG + Chr7:85958231-85958250 MsG0780041058.01.T01:intron 30.0%
TTGGAAACTACTACTACTTT+AGG + Chr7:85961402-85961421 MsG0780041058.01.T01:intron 30.0%
TTGTGAACTCAAAATGTAAG+AGG + Chr7:85958036-85958055 MsG0780041058.01.T01:CDS 30.0%
TTTAATCCGATTTAGTCATG+CGG - Chr7:85960064-85960083 None:intergenic 30.0%
! AAATGACTCATGTTGGATTT+TGG + Chr7:85962599-85962618 MsG0780041058.01.T01:intron 30.0%
! ATTACTAACTTTTCCACACA+AGG - Chr7:85957775-85957794 None:intergenic 30.0%
! TAGACCGGGTTATTTAAAAT+GGG + Chr7:85961819-85961838 MsG0780041058.01.T01:intron 30.0%
! TCAAGTACCCATCATATTTT+TGG + Chr7:85962189-85962208 MsG0780041058.01.T01:intron 30.0%
! TTACTAACTTTTCCACACAA+GGG - Chr7:85957774-85957793 None:intergenic 30.0%
! TTCTACGTACTCTGTTATTT+AGG - Chr7:85961365-85961384 None:intergenic 30.0%
!!! AAATGACTCATGTTGGTTTT+TGG + Chr7:85957897-85957916 MsG0780041058.01.T01:intron 30.0%
!!! CCCCGCTAATTTTTTTATTT+GGG + Chr7:85961520-85961539 MsG0780041058.01.T01:intron 30.0%
!!! TACATTTTGAGTTCACAAAG+AGG - Chr7:85958034-85958053 None:intergenic 30.0%
!!! TGCATTTTGATTGAACTAGT+GGG + Chr7:85962429-85962448 MsG0780041058.01.T01:intron 30.0%
!!! TTGCATTTTGATTGAACTAG+TGG + Chr7:85962428-85962447 MsG0780041058.01.T01:intron 30.0%
AAACATGACATCACTGAGTT+TGG + Chr7:85959773-85959792 MsG0780041058.01.T01:intron 35.0%
AATGTAACTAGGTTCATGGA+TGG - Chr7:85962930-85962949 None:intergenic 35.0%
AATTGAGAGCTGGAAAAAAG+AGG - Chr7:85959676-85959695 None:intergenic 35.0%
AGATTGAAAATATGTGCGAC+GGG + Chr7:85959464-85959483 MsG0780041058.01.T01:CDS 35.0%
ATATTATGCATCTGTTGTGC+AGG + Chr7:85958334-85958353 MsG0780041058.01.T01:intron 35.0%
ATTTGCCAAACATTGTAACC+AGG - Chr7:85959121-85959140 None:intergenic 35.0%
CAACAATGTAACTAGGTTCA+TGG - Chr7:85962934-85962953 None:intergenic 35.0%
CAAGGCTATCTGATAGAATT+AGG - Chr7:85962979-85962998 None:intergenic 35.0%
CGAGTTATAACCGAATCTTT+CGG - Chr7:85960087-85960106 None:intergenic 35.0%
CTCATCCATAATTATTTGGG+GGG + Chr7:85961755-85961774 MsG0780041058.01.T01:intron 35.0%
GAATTTATTGCACCCTTGTT+TGG + Chr7:85962461-85962480 MsG0780041058.01.T01:intron 35.0%
GAGAGAACCCAGATATTAAA+TGG + Chr7:85958976-85958995 MsG0780041058.01.T01:intron 35.0%
GATTCATCAACTAAACCCTA+CGG - Chr7:85962051-85962070 None:intergenic 35.0%
GTAACCACAACAATGTAACT+AGG - Chr7:85962941-85962960 None:intergenic 35.0%
TACGAAAACGGGTATATAGA+AGG + Chr7:85961847-85961866 MsG0780041058.01.T01:intron 35.0%
TATGGAATCTCACTTCTCTA+CGG - Chr7:85961081-85961100 None:intergenic 35.0%
TCGGATTAAACCGAAAGATT+CGG + Chr7:85960074-85960093 MsG0780041058.01.T01:intron 35.0%
TGAACCTAGTTACATTGTTG+TGG + Chr7:85962934-85962953 MsG0780041058.01.T01:intron 35.0%
! CGAAAGATTCGGTTATAACT+CGG + Chr7:85960085-85960104 MsG0780041058.01.T01:intron 35.0%
! CTATATACCCGTTTTCGTAT+CGG - Chr7:85961846-85961865 None:intergenic 35.0%
! GTTAGACTCTAAGAATATGG+CGG + Chr7:85959733-85959752 MsG0780041058.01.T01:intron 35.0%
! TATATACCCGTTTTCGTATC+GGG - Chr7:85961845-85961864 None:intergenic 35.0%
!! CTTTCTATTATGCTGACTCT+GGG + Chr7:85963217-85963236 MsG0780041058.01.T01:intron 35.0%
!!! CATAGTTTTAAAACTCGGAC+CGG + Chr7:85959973-85959992 MsG0780041058.01.T01:intron 35.0%
!!! CATAGTTTTAAAACTCGGAC+CGG - Chr7:85959992-85959973 None:intergenic 35.0%
!!! CCCCCGCTAATTTTTTTATT+TGG + Chr7:85961519-85961538 MsG0780041058.01.T01:intron 35.0%
!!! TAGTGAGTGGCTTTTGAAAT+CGG + Chr7:85962302-85962321 MsG0780041058.01.T01:intron 35.0%
!!! TCTTTTTTCCAGCTCTCAAT+TGG + Chr7:85959675-85959694 MsG0780041058.01.T01:intron 35.0%
AAAGAGGCCAAGACACAAAT+AGG - Chr7:85959660-85959679 None:intergenic 40.0%
AAGAGGCCAAGACACAAATA+GGG - Chr7:85959659-85959678 None:intergenic 40.0%
ATAAATCTGATCCCTCTTCC+TGG - Chr7:85957852-85957871 None:intergenic 40.0%
ATATTATGCATCTGTCGTGC+AGG + Chr7:85963037-85963056 MsG0780041058.01.T01:intron 40.0%
ATTGCTTAACTAGTGTTCCG+AGG + Chr7:85960947-85960966 MsG0780041058.01.T01:intron 40.0%
ATTTCACTGCAGGATTGACT+CGG - Chr7:85963468-85963487 None:intergenic 40.0%
CAAAGATTTACCCAGGAAGA+GGG + Chr7:85957838-85957857 MsG0780041058.01.T01:CDS 40.0%
CCAGAGTCAGCATAATAGAA+AGG - Chr7:85963219-85963238 None:intergenic 40.0%
CTAACATAGCAAGGGATCAT+TGG - Chr7:85959032-85959051 None:intergenic 40.0%
CTGATCCTGGTTACAATGTT+TGG + Chr7:85959113-85959132 MsG0780041058.01.T01:intron 40.0%
CTTTGACTAAATCACCACCT+AGG - Chr7:85959938-85959957 None:intergenic 40.0%
GGAGAGGATAAAGAAAACCA+AGG + Chr7:85958709-85958728 MsG0780041058.01.T01:CDS 40.0%
GTTGAACCGCATGACTAAAT+CGG + Chr7:85960055-85960074 MsG0780041058.01.T01:intron 40.0%
TAAACCCTACGGCAACAAAA+TGG - Chr7:85962040-85962059 None:intergenic 40.0%
TAAATCTGATCCCTCTTCCT+GGG - Chr7:85957851-85957870 None:intergenic 40.0%
TAAGGCTTATGCGAATCAAG+AGG + Chr7:85960489-85960508 MsG0780041058.01.T01:intron 40.0%
TACACTTCATCCTACCTTAG+AGG - Chr7:85959543-85959562 None:intergenic 40.0%
TCAAAGATTTACCCAGGAAG+AGG + Chr7:85962539-85962558 MsG0780041058.01.T01:CDS 40.0%
TCAATCCTGCAGTGAAATCA+AGG + Chr7:85963470-85963489 MsG0780041058.01.T01:CDS 40.0%
TCTCACCCCCCAAATAATTA+TGG - Chr7:85961763-85961782 None:intergenic 40.0%
TTCAAGTGTAGCACCAACAA+TGG - Chr7:85958420-85958439 None:intergenic 40.0%
TTGCTTAACTAGTGTTCCGA+GGG + Chr7:85960948-85960967 MsG0780041058.01.T01:intron 40.0%
! AGCTAATTGAGTTGTCACCT+AGG + Chr7:85959918-85959937 MsG0780041058.01.T01:intron 40.0%
! CAATGATCCCTTGCTATGTT+AGG + Chr7:85959030-85959049 MsG0780041058.01.T01:intron 40.0%
! CATCTAAGGCACAAAAGTCA+GGG + Chr7:85958762-85958781 MsG0780041058.01.T01:CDS 40.0%
! CGAACATTGAGCTTTTGTGT+TGG + Chr7:85959614-85959633 MsG0780041058.01.T01:intron 40.0%
! TAATTGAGTTGTCACCTAGG+TGG + Chr7:85959921-85959940 MsG0780041058.01.T01:intron 40.0%
! TTCTCCATTTTGTTGCCGTA+GGG + Chr7:85962033-85962052 MsG0780041058.01.T01:intron 40.0%
! TTGTGCCTTAGATGCTACTT+CGG - Chr7:85958756-85958775 None:intergenic 40.0%
! TTTCTCCATTTTGTTGCCGT+AGG + Chr7:85962032-85962051 MsG0780041058.01.T01:intron 40.0%
!! CCTTTCTATTATGCTGACTC+TGG + Chr7:85963216-85963235 MsG0780041058.01.T01:intron 40.0%
!! CTTGGCTTTCTTTTCATCCT+TGG - Chr7:85963511-85963530 None:intergenic 40.0%
!! GACAGAGTTCAGTTCTGAAA+TGG - Chr7:85957806-85957825 None:intergenic 40.0%
!! TTGAAGGCTTCAACTTGTTG+TGG - Chr7:85958067-85958086 None:intergenic 40.0%
AAAGAAAGCCAAGAAAGCCG+AGG + Chr7:85963518-85963537 MsG0780041058.01.T01:CDS 45.0%
AAATGGGCCCGATACGAAAA+CGG + Chr7:85961835-85961854 MsG0780041058.01.T01:intron 45.0%
AACATTGCCGAGTCGATAAC+CGG - Chr7:85959995-85960014 None:intergenic 45.0%
AAGGCACAAAAGTCAGGGAA+AGG + Chr7:85958767-85958786 MsG0780041058.01.T01:CDS 45.0%
AAGGCACAAAAGTCAGGGAA+GGG + Chr7:85958767-85958786 MsG0780041058.01.T01:CDS 45.0%
AAGTCCTAGCTTGAACTGCT+TGG + Chr7:85959082-85959101 MsG0780041058.01.T01:intron 45.0%
AATTATTTGGGGGGTGAGAG+AGG + Chr7:85961764-85961783 MsG0780041058.01.T01:intron 45.0%
ACAGTGATGAGCTGAGATGT+TGG - Chr7:85961261-85961280 None:intergenic 45.0%
AGAATGTTAACCAGAGCCTC+CGG + Chr7:85960815-85960834 MsG0780041058.01.T01:intron 45.0%
AGAGGCCAAGACACAAATAG+GGG - Chr7:85959658-85959677 None:intergenic 45.0%
AGGGAAAGGCAATGTTCAGA+AGG + Chr7:85958781-85958800 MsG0780041058.01.T01:CDS 45.0%
AGGGAAGGGAAATGTTCAGA+AGG + Chr7:85963563-85963582 MsG0780041058.01.T01:CDS 45.0%
AGTGGCTCAAAGATTTACCC+AGG + Chr7:85962533-85962552 MsG0780041058.01.T01:CDS 45.0%
ATAAGCCTTACCATTGCAGC+AGG - Chr7:85960479-85960498 None:intergenic 45.0%
ATCCAAAACTCAGACCGAAC+CGG + Chr7:85960678-85960697 MsG0780041058.01.T01:intron 45.0%
ATGATTTACAGCTGCCTCCA+TGG - Chr7:85959161-85959180 None:intergenic 45.0%
ATGCCCAAGGGTCCTAAAAT+GGG + Chr7:85958809-85958828 MsG0780041058.01.T01:CDS 45.0%
ATGTTCCCTATTCCCTACCA+TGG + Chr7:85959141-85959160 MsG0780041058.01.T01:intron 45.0%
ATTTCACTGCGGGATTGACT+CGG - Chr7:85958686-85958705 None:intergenic 45.0%
CTCAAGAAGCGGTGAAGAAA+AGG + Chr7:85963066-85963085 MsG0780041058.01.T01:CDS 45.0%
GAAAGCCGAAGTAGCATCTA+AGG + Chr7:85958748-85958767 MsG0780041058.01.T01:CDS 45.0%
GAATTTATTGCGCCCTTGTG+TGG + Chr7:85957759-85957778 MsG0780041058.01.T01:CDS 45.0%
GCAAAGATTTACCCAGGAAG+AGG + Chr7:85957837-85957856 MsG0780041058.01.T01:CDS 45.0%
GCAGTTCAAGCTAGGACTTT+AGG - Chr7:85959081-85959100 None:intergenic 45.0%
GCTTATGCGAATCAAGAGGA+AGG + Chr7:85960493-85960512 MsG0780041058.01.T01:intron 45.0%
GGGAAAGGCAATGTTCAGAA+GGG + Chr7:85958782-85958801 MsG0780041058.01.T01:CDS 45.0%
GGGAAGGGAAATGTTCAGAA+GGG + Chr7:85963564-85963583 MsG0780041058.01.T01:CDS 45.0%
GGTTAGAGGTAATGATGGTC+TGG + Chr7:85959485-85959504 MsG0780041058.01.T01:intron 45.0%
GTACAGAAAGCAGCACAAGA+AGG + Chr7:85958106-85958125 MsG0780041058.01.T01:CDS 45.0%
GTTCTCCCCTATTTGTGTCT+TGG + Chr7:85959650-85959669 MsG0780041058.01.T01:intron 45.0%
TAAGGCACAAAAGTCAGGGA+AGG + Chr7:85958766-85958785 MsG0780041058.01.T01:CDS 45.0%
TATGCCCAAGGGTCCTAAAA+TGG + Chr7:85958808-85958827 MsG0780041058.01.T01:CDS 45.0%
TCAATCCCGCAGTGAAATCA+AGG + Chr7:85958688-85958707 MsG0780041058.01.T01:intron 45.0%
TCACGTATCCAATTGAGAGC+TGG - Chr7:85959686-85959705 None:intergenic 45.0%
TCCTCTCCTTGATTTCACTG+CGG - Chr7:85958697-85958716 None:intergenic 45.0%
TGAAGCCTTCAAAGCTCACA+TGG + Chr7:85958075-85958094 MsG0780041058.01.T01:CDS 45.0%
TGGTTGAACCACTGAGTCAT+TGG + Chr7:85960033-85960052 MsG0780041058.01.T01:intron 45.0%
TGGTTGCTTAACTAATGCCC+CGG - Chr7:85960837-85960856 None:intergenic 45.0%
TTAAAAAAGTGGCGCCTGAG+AGG - Chr7:85960532-85960551 None:intergenic 45.0%
TTGTGCCTTAGATGCTACCT+CGG - Chr7:85963538-85963557 None:intergenic 45.0%
TTTCAGAGAGAGAGAGAGAG+AGG - Chr7:85961296-85961315 None:intergenic 45.0%
! AGATGCTACTTCGGCTTTCT+TGG - Chr7:85958747-85958766 None:intergenic 45.0%
! CGGGCCCATTTTAAATAACC+CGG - Chr7:85961826-85961845 None:intergenic 45.0%
! CTTGGCTTTCTTCTCATCCT+TGG - Chr7:85958729-85958748 None:intergenic 45.0%
! GCATCTAAGGCACAAAAGTC+AGG + Chr7:85958761-85958780 MsG0780041058.01.T01:CDS 45.0%
!! AAATATGTGCGACGGGTTAG+AGG + Chr7:85959471-85959490 MsG0780041058.01.T01:intron 45.0%
!! ACTGAACTCTGTCGATTCAG+TGG + Chr7:85957813-85957832 MsG0780041058.01.T01:CDS 45.0%
!! ATCGACTCGGCAATGTTACT+GGG + Chr7:85959998-85960017 MsG0780041058.01.T01:intron 45.0%
!! CTTGTGCTGCTTTCTGTACA+TGG - Chr7:85958105-85958124 None:intergenic 45.0%
!! TATCGACTCGGCAATGTTAC+TGG + Chr7:85959997-85960016 MsG0780041058.01.T01:intron 45.0%
!! TCTCTCTCTCTGAAACAACG+TGG + Chr7:85961301-85961320 MsG0780041058.01.T01:intron 45.0%
!!! GTTCGGTCTGAGTTTTGGAT+CGG - Chr7:85960678-85960697 None:intergenic 45.0%
!!! TTTTAAAACTCGGACCGGAC+CGG - Chr7:85960741-85960760 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAG+AGG - Chr7:85963244-85963263 None:intergenic 5.0%
!!! AAAATGTTTTAAAAAAATTA+AGG + Chr7:85960278-85960297 MsG0780041058.01.T01:intron 5.0%
AAACTCAGACCGAACCGGTT+AGG + Chr7:85960683-85960702 MsG0780041058.01.T01:intron 50.0%
AACTCAGACCGAACCGGTTA+GGG + Chr7:85960684-85960703 MsG0780041058.01.T01:intron 50.0%
AATGGGCCCGATACGAAAAC+GGG + Chr7:85961836-85961855 MsG0780041058.01.T01:intron 50.0%
AATGTTAACCAGAGCCTCCG+GGG + Chr7:85960817-85960836 MsG0780041058.01.T01:intron 50.0%
AGAGAGAGAGGAGAGGATTC+AGG - Chr7:85961284-85961303 None:intergenic 50.0%
AGATGCTACCTCGGCTTTCT+TGG - Chr7:85963529-85963548 None:intergenic 50.0%
AGTCCTGTTCATAGAACCGC+CGG + Chr7:85960591-85960610 MsG0780041058.01.T01:intron 50.0%
AGTGCCAAGCAGTTCAAGCT+AGG - Chr7:85959089-85959108 None:intergenic 50.0%
AGTGGCGCAAAGATTTACCC+AGG + Chr7:85957831-85957850 MsG0780041058.01.T01:CDS 50.0%
ATGAGCATTCGTCCCTCCTT+TGG - Chr7:85961464-85961483 None:intergenic 50.0%
CCAACAATGGACCTGGAGTA+TGG - Chr7:85958407-85958426 None:intergenic 50.0%
CCATACTCCAGGTCCATTGT+TGG + Chr7:85958404-85958423 MsG0780041058.01.T01:CDS 50.0%
CCTCTCCTTGATTTCACTGC+AGG - Chr7:85958696-85958715 None:intergenic 50.0%
CCTCTCCTTGATTTCACTGC+GGG - Chr7:85958696-85958715 None:intergenic 50.0%
CCTGCAGTGAAATCAAGGAG+AGG + Chr7:85963475-85963494 MsG0780041058.01.T01:CDS 50.0%
CGGTTCAACCAATGACTCAG+TGG - Chr7:85960044-85960063 None:intergenic 50.0%
CTCAAGAAGCGGTGAAGAAG+AGG + Chr7:85958363-85958382 MsG0780041058.01.T01:CDS 50.0%
CTCTACGGTGATATGCATCC+AGG - Chr7:85961066-85961085 None:intergenic 50.0%
GAAAGCCGAGGTAGCATCTA+AGG + Chr7:85963530-85963549 MsG0780041058.01.T01:CDS 50.0%
GAATGTTAACCAGAGCCTCC+GGG + Chr7:85960816-85960835 MsG0780041058.01.T01:intron 50.0%
GATCGGTTATGCAGTTAGCC+CGG - Chr7:85960661-85960680 None:intergenic 50.0%
GCAGGACATTGCTCAAGAAG+CGG + Chr7:85958352-85958371 MsG0780041058.01.T01:intron 50.0%
GGGTGAGAGAGGCAAGTATA+GGG + Chr7:85961775-85961794 MsG0780041058.01.T01:intron 50.0%
TGCCTCCATGGTAGGGAATA+GGG - Chr7:85959149-85959168 None:intergenic 50.0%
TGTAGCACCAACAATGGACC+TGG - Chr7:85958414-85958433 None:intergenic 50.0%
TTACAGCTGCCTCCATGGTA+GGG - Chr7:85959156-85959175 None:intergenic 50.0%
TTCCCTATTCCCTACCATGG+AGG + Chr7:85959144-85959163 MsG0780041058.01.T01:intron 50.0%
TTGCTTAACTAATGCCCCGG+AGG - Chr7:85960834-85960853 None:intergenic 50.0%
TTTACAGCTGCCTCCATGGT+AGG - Chr7:85959157-85959176 None:intergenic 50.0%
! AGTATGGCTTCTTGGTGGCA+CGG - Chr7:85958391-85958410 None:intergenic 50.0%
! GCAGTCCATGTGAGCTTTGA+AGG - Chr7:85958083-85958102 None:intergenic 50.0%
!! CGACGGGTTAGAGGTAATGA+TGG + Chr7:85959480-85959499 MsG0780041058.01.T01:intron 50.0%
!! TTACTGGGTCACTGGTTCGT+TGG + Chr7:85960013-85960032 MsG0780041058.01.T01:intron 50.0%
!!! AACCGGTTCGGTCTGAGTTT+TGG - Chr7:85960683-85960702 None:intergenic 50.0%
AAGCGCCTGCTGCAATGGTA+AGG + Chr7:85960471-85960490 MsG0780041058.01.T01:intron 55.0%
AAGCTCTCCCAAGCCACCAA+AGG + Chr7:85961445-85961464 MsG0780041058.01.T01:intron 55.0%
AAGGGTCCTAAAATGGGCGG+TGG + Chr7:85958815-85958834 MsG0780041058.01.T01:CDS 55.0%
ACTCAGACCGAACCGGTTAG+GGG + Chr7:85960685-85960704 MsG0780041058.01.T01:intron 55.0%
AGCATTCGTCCCTCCTTTGG+TGG - Chr7:85961461-85961480 None:intergenic 55.0%
ATCTCGAACCTCGGGCTTCT+CGG - Chr7:85958462-85958481 None:intergenic 55.0%
CAACCGGTTGAACCGGAAAC+CGG - Chr7:85960712-85960731 None:intergenic 55.0%
CCACATCAACGAAGCAGCCA+TGG + Chr7:85961934-85961953 MsG0780041058.01.T01:intron 55.0%
CCACCAAGAAGCCATACTCC+AGG + Chr7:85958393-85958412 MsG0780041058.01.T01:CDS 55.0%
CCATGGCTGCTTCGTTGATG+TGG - Chr7:85961937-85961956 None:intergenic 55.0%
CCCAAGGGTCCTAAAATGGG+CGG + Chr7:85958812-85958831 MsG0780041058.01.T01:CDS 55.0%
CCCGCAGTGAAATCAAGGAG+AGG + Chr7:85958693-85958712 MsG0780041058.01.T01:intron 55.0%
CCTAGCAGCATCTCGAACCT+CGG - Chr7:85958471-85958490 None:intergenic 55.0%
CCTGGAGTATGGCTTCTTGG+TGG - Chr7:85958396-85958415 None:intergenic 55.0%
CGAGGTTCGAGATGCTGCTA+GGG + Chr7:85958469-85958488 MsG0780041058.01.T01:CDS 55.0%
CGGCAATGTTACTGGGTCAC+TGG + Chr7:85960005-85960024 MsG0780041058.01.T01:intron 55.0%
CTAGCAGCATCTCGAACCTC+GGG - Chr7:85958470-85958489 None:intergenic 55.0%
CTGCCTCCATGGTAGGGAAT+AGG - Chr7:85959150-85959169 None:intergenic 55.0%
CTGCTAGGGAAGCTGCTCTT+CGG + Chr7:85958483-85958502 MsG0780041058.01.T01:CDS 55.0%
CTTGGCACTTACGCTGATCC+TGG + Chr7:85959100-85959119 MsG0780041058.01.T01:intron 55.0%
GAAAAGAACCGAGAAGCCCG+AGG + Chr7:85958451-85958470 MsG0780041058.01.T01:CDS 55.0%
GAGAGAGAGAGAGAGAGGAG+AGG - Chr7:85961291-85961310 None:intergenic 55.0%
GGACCTGGAGTATGGCTTCT+TGG - Chr7:85958399-85958418 None:intergenic 55.0%
GGCGGTTCTATGAACAGGAC+TGG - Chr7:85960592-85960611 None:intergenic 55.0%
GGGGTGAGAGAGGCAAGTAT+AGG + Chr7:85961774-85961793 MsG0780041058.01.T01:intron 55.0%
GTCCTGTTAACCAGTGCCCT+CGG - Chr7:85960967-85960986 None:intergenic 55.0%
GTCCTGTTCATAGAACCGCC+GGG + Chr7:85960592-85960611 MsG0780041058.01.T01:intron 55.0%
GTCGCCTGTTCAATCCTCTC+AGG + Chr7:85960515-85960534 MsG0780041058.01.T01:intron 55.0%
TCCGGTTCAACCGGTTGAAC+CGG + Chr7:85960715-85960734 MsG0780041058.01.T01:intron 55.0%
TCTCCCAAGCCACCAAAGGA+GGG + Chr7:85961449-85961468 MsG0780041058.01.T01:intron 55.0%
TGGCTGCTTCGTTGATGTGG+TGG - Chr7:85961934-85961953 None:intergenic 55.0%
! AACTAGTGTTCCGAGGGCAC+TGG + Chr7:85960954-85960973 MsG0780041058.01.T01:intron 55.0%
! ACATGAAGCGCCTGCTGCAA+TGG + Chr7:85960466-85960485 MsG0780041058.01.T01:intron 55.0%
! ACTCGGACCGGTTATCGACT+CGG + Chr7:85959985-85960004 MsG0780041058.01.T01:intron 55.0%
! CTAAAATGGGCGGTGGTGGT+GGG + Chr7:85958822-85958841 MsG0780041058.01.T01:CDS 55.0%
!! CAGAAGGGTGCTATGCCCAA+GGG + Chr7:85958797-85958816 MsG0780041058.01.T01:CDS 55.0%
!! TCAGAAGGGTGCTATGCCCA+AGG + Chr7:85958796-85958815 MsG0780041058.01.T01:CDS 55.0%
!! TTCCGAGGGCACTGGTTAAC+AGG + Chr7:85960962-85960981 MsG0780041058.01.T01:intron 55.0%
!!! ACCGCCCATTTTAGGACCCT+TGG - Chr7:85958816-85958835 None:intergenic 55.0%
!!! CCGCCCATTTTAGGACCCTT+GGG - Chr7:85958815-85958834 None:intergenic 55.0%
AACCGGACCCCTAACCGGTT+CGG - Chr7:85960695-85960714 None:intergenic 60.0%
AACTAATGCCCCGGAGGCTC+TGG - Chr7:85960828-85960847 None:intergenic 60.0%
CCGAGGTTCGAGATGCTGCT+AGG + Chr7:85958468-85958487 MsG0780041058.01.T01:CDS 60.0%
CGGCCAGAACCGGTGAAAAC+CGG - Chr7:85960621-85960640 None:intergenic 60.0%
CTCTCCCAAGCCACCAAAGG+AGG + Chr7:85961448-85961467 MsG0780041058.01.T01:intron 60.0%
GACCCGGCGGTTCTATGAAC+AGG - Chr7:85960597-85960616 None:intergenic 60.0%
GCAGTTAGCCCGGTGTGAAC+CGG - Chr7:85960651-85960670 None:intergenic 60.0%
GGCGCCTGAGAGGATTGAAC+AGG - Chr7:85960522-85960541 None:intergenic 60.0%
GGTCCGGTTTCCGGTTCAAC+CGG + Chr7:85960706-85960725 MsG0780041058.01.T01:intron 60.0%
GGTCCTAAAATGGGCGGTGG+TGG + Chr7:85958818-85958837 MsG0780041058.01.T01:CDS 60.0%
GTTCAACCGGTTGAACCGGC+CGG + Chr7:85960719-85960738 MsG0780041058.01.T01:intron 60.0%
! CCACCACCACCGCCCATTTT+AGG - Chr7:85958824-85958843 None:intergenic 60.0%
! CCTAAAATGGGCGGTGGTGG+CGG + Chr7:85958821-85958840 MsG0780041058.01.T01:CDS 60.0%
! CCTAAAATGGGCGGTGGTGG+TGG + Chr7:85958821-85958840 MsG0780041058.01.T01:CDS 60.0%
! CGTCCCTCCTTTGGTGGCTT+GGG - Chr7:85961455-85961474 None:intergenic 60.0%
! CTAAAATGGGCGGTGGTGGC+GGG + Chr7:85963604-85963623 MsG0780041058.01.T01:CDS 60.0%
! GCCGGTTCAACCGGTTGAAC+CGG - Chr7:85960719-85960738 None:intergenic 60.0%
! TCGTCCCTCCTTTGGTGGCT+TGG - Chr7:85961456-85961475 None:intergenic 60.0%
!!! TCGCCGGTTTTCACCGGTTC+TGG + Chr7:85960615-85960634 MsG0780041058.01.T01:intron 60.0%
AAAACTCGGACCGGACCGGC+CGG - Chr7:85960737-85960756 None:intergenic 65.0%
ACCGGTGAAAACCGGCGACC+CGG - Chr7:85960613-85960632 None:intergenic 65.0%
CCGGAAACCGGACCCCTAAC+CGG - Chr7:85960700-85960719 None:intergenic 65.0%
CCGGTTAGGGGTCCGGTTTC+CGG + Chr7:85960697-85960716 MsG0780041058.01.T01:intron 65.0%
CGGTGTGAACCGGTGCGACT+CGG - Chr7:85960641-85960660 None:intergenic 65.0%
GACCGAACCGGTTAGGGGTC+CGG + Chr7:85960690-85960709 MsG0780041058.01.T01:intron 65.0%
TCATAGAACCGCCGGGTCGC+CGG + Chr7:85960599-85960618 MsG0780041058.01.T01:intron 65.0%
! CCGCCACCACCGCCCATTTT+AGG - Chr7:85963606-85963625 None:intergenic 65.0%
!! CGAGTCGCACCGGTTCACAC+CGG + Chr7:85960639-85960658 MsG0780041058.01.T01:intron 65.0%
!! GAGTCGCACCGGTTCACACC+GGG + Chr7:85960640-85960659 MsG0780041058.01.T01:intron 65.0%
ACCGGTTGAACCGGCCGGTC+CGG + Chr7:85960724-85960743 MsG0780041058.01.T01:intron 70.0%
GGTGAAAACCGGCGACCCGG+CGG - Chr7:85960610-85960629 None:intergenic 70.0%
! ACCGGACCGGCCGGTTCAAC+CGG - Chr7:85960728-85960747 None:intergenic 70.0%
! CGGTGCGACTCGGCCAGAAC+CGG - Chr7:85960631-85960650 None:intergenic 70.0%
! CGGTTCTGGCCGAGTCGCAC+CGG + Chr7:85960629-85960648 MsG0780041058.01.T01:intron 70.0%
!!! GCCGGGTCGCCGGTTTTCAC+CGG + Chr7:85960609-85960628 MsG0780041058.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 85957748 85963635 85957748 ID=MsG0780041058.01;Name=MsG0780041058.01
Chr7 mRNA 85957748 85963635 85957748 ID=MsG0780041058.01.T01;Parent=MsG0780041058.01;Name=MsG0780041058.01.T01;_AED=0.45;_eAED=0.51;_QI=0|0.44|0.5|1|0.55|0.7|10|0|362
Chr7 exon 85957748 85957887 85957748 ID=MsG0780041058.01.T01:exon:17948;Parent=MsG0780041058.01.T01
Chr7 exon 85957953 85957959 85957953 ID=MsG0780041058.01.T01:exon:17949;Parent=MsG0780041058.01.T01
Chr7 exon 85958026 85958127 85958026 ID=MsG0780041058.01.T01:exon:17950;Parent=MsG0780041058.01.T01
Chr7 exon 85958356 85958504 85958356 ID=MsG0780041058.01.T01:exon:17951;Parent=MsG0780041058.01.T01
Chr7 exon 85958700 85958848 85958700 ID=MsG0780041058.01.T01:exon:17952;Parent=MsG0780041058.01.T01
Chr7 exon 85959437 85959485 85959437 ID=MsG0780041058.01.T01:exon:17953;Parent=MsG0780041058.01.T01
Chr7 exon 85962514 85962589 85962514 ID=MsG0780041058.01.T01:exon:17954;Parent=MsG0780041058.01.T01
Chr7 exon 85962729 85962830 85962729 ID=MsG0780041058.01.T01:exon:17955;Parent=MsG0780041058.01.T01
Chr7 exon 85963059 85963207 85963059 ID=MsG0780041058.01.T01:exon:17956;Parent=MsG0780041058.01.T01
Chr7 exon 85963470 85963635 85963470 ID=MsG0780041058.01.T01:exon:17957;Parent=MsG0780041058.01.T01
Chr7 CDS 85957748 85957887 85957748 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85957953 85957959 85957953 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85958026 85958127 85958026 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85958356 85958504 85958356 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85958700 85958848 85958700 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85959437 85959485 85959437 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85962514 85962589 85962514 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85962729 85962830 85962729 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85963059 85963207 85963059 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Chr7 CDS 85963470 85963635 85963470 ID=MsG0780041058.01.T01:cds;Parent=MsG0780041058.01.T01
Gene Sequence

>MsG0780041058.01.T01

GGTTGTGTTTTGAATTTATTGCGCCCTTGTGTGGAAAAGTTAGTAATTGATGTTTCCATTTCAGAACTGAACTCTGTCGATTCAGTGGCGCAAAGATTTACCCAGGAAGAGGGATCAGATTTATTCGTAGTGATTCTCAGTTTTGTCGTTTTCCTCTTTGTGAACTCAAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCTTCAAAGCTCACATGGACTGCCATGTACAGAAAGCAGCACAAGAAGGACATTGCTCAAGAAGCGGTGAAGAAGAGGCGCCGTGCCACCAAGAAGCCATACTCCAGGTCCATTGTTGGTGCTACACTTGAAGTCATTCAGAAGAAAAGAACCGAGAAGCCCGAGGTTCGAGATGCTGCTAGGGAAGCTGCTCTTCGTGAAATCAAGGAGAGGATAAAGAAAACCAAGGATGAGAAGAAAGCCAAGAAAGCCGAAGTAGCATCTAAGGCACAAAAGTCAGGGAAAGGCAATGTTCAGAAGGGTGCTATGCCCAAGGGTCCTAAAATGGGCGGTGGTGGTGGGAAGCACTTGAGTGAGCACGAGTTATGCTTCAAGATTGAAAATATGTGCGACGGAACTGAACTCTGTCGATTCAGTGGCTCAAAGATTTACCCAGGAAGAGGGATCAGATTTATTCGTAGTGATTCTCAGGTTTTCCTCTTTGTGAACTCAAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCTTCAAAGCTCACATGGACTGCCATGTACAGAAAGCAGCACAAGAAGGACATTGCTCAAGAAGCGGTGAAGAAAAGGCGCCGTGCCACCAAGAAGCCATACTCCAGGTCCATTGTTGGTGCTACACTTGAAGTCATTCAGAAGAAAAGAACCGAGAAGCCCGAGGTTCGAGATGCTGCTAGGGAAGCTGCTCTTCGTCAATCCTGCAGTGAAATCAAGGAGAGGATAAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAAGCCGAGGTAGCATCTAAGGCACAAAAGTCAGGGAAGGGAAATGTTCAGAAGGGTGCTATGCCCAAGGGTCCTAAAATGGGCGGTGGTGGCGGGAAGCGTTAA

Protein sequence

>MsG0780041058.01.T01

GCVLNLLRPCVEKLVIDVSISELNSVDSVAQRFTQEEGSDLFVVILSFVVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSGKGNVQKGAMPKGPKMGGGGGKHLSEHELCFKIENMCDGTELCRFSGSKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALRQSCSEIKERIKKTKDEKKAKKAEVASKAQKSGKGNVQKGAMPKGPKMGGGGGKR*