AlfalfaGEDB | MsG0580029492.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029492.01

KEGG: K09842
GO: GO:0005506 GO:0009055 GO:0016491 GO:0016614 GO:0046872 GO:0050660 GO:0051536 GO:0051537 GO:0055114
PFAM: PF00111 PF00941 PF01315 PF01799 PF02738 PF03450

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029492.01.T01	XP_003617053.2	95.266	1373	64	1	1	1373	1	1372	0	2612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029492.01.T01	Q7G192	60.073	1370	485	18	11	1372	2	1317	0	1655

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029492.01.T01	G7KHG0	95.266	1373	64	1	1	1373	1	1372	0.0	2612

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000017.01	MsG0580029492.01	0.802949	4.399878e-49	2.183483e-46
MsG0180000489.01	MsG0580029492.01	0.805651	1.204185e-49	6.405878e-47
MsG0180000490.01	MsG0580029492.01	0.806052	9.918895e-50	5.331058e-47
MsG0180000491.01	MsG0580029492.01	0.815451	9.180842e-52	6.332270e-49
MsG0180000942.01	MsG0580029492.01	0.807738	4.364218e-50	2.449915e-47
MsG0180001120.01	MsG0580029492.01	0.808426	3.115532e-50	1.780869e-47
MsG0180002024.01	MsG0580029492.01	0.816555	5.207098e-52	3.701329e-49
MsG0180002891.01	MsG0580029492.01	0.823395	1.417488e-53	1.218875e-50
MsG0180004106.01	MsG0580029492.01	0.810927	9.036763e-51	5.519192e-48
MsG0180004112.01	MsG0580029492.01	0.818972	1.483114e-52	1.126773e-49

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PPI

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Gene1	Gene2	Type
MsG0280011054.01	MsG0580029492.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029492.01.T01	MTR_5g087410	95.266	1373	64	1	1	1373	1	1372	0.0	2612
MsG0580029492.01.T01	MTR_5g087410	94.610	1243	66	1	1	1243	1	1242	0.0	2336
MsG0580029492.01.T01	MTR_5g087390	77.859	1373	281	8	1	1370	1	1353	0.0	2196
MsG0580029492.01.T01	MTR_2g098030	30.764	1414	827	39	1	1349	7	1333	3.80e-157	510
MsG0580029492.01.T01	MTR_2g098030	30.764	1414	827	39	1	1349	3	1329	4.00e-157	509
MsG0580029492.01.T01	MTR_2g098030	29.932	1323	777	37	91	1349	3	1239	3.80e-148	483
MsG0580029492.01.T01	MTR_4g119170	78.049	41	8	1	969	1009	183	222	2.77e-12	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580029492.01.T01	AT3G43600	60.073	1370	485	18	11	1372	2	1317	1655
MsG0580029492.01.T01	AT2G27150	60.249	1366	503	15	12	1373	3	1332	1632
MsG0580029492.01.T01	AT2G27150	60.249	1366	503	15	12	1373	3	1332	1632
MsG0580029492.01.T01	AT1G04580	58.352	1371	516	14	12	1369	6	1334	1614
MsG0580029492.01.T01	AT5G20960	58.545	1375	535	18	8	1373	17	1365	1607
MsG0580029492.01.T01	AT5G20960	58.545	1375	535	18	8	1373	17	1365	1607
MsG0580029492.01.T01	AT2G27150	58.866	1252	475	15	126	1373	1	1216	1473
MsG0580029492.01.T01	AT2G27150	58.866	1252	475	15	126	1373	1	1216	1473
MsG0580029492.01.T01	AT2G27150	58.814	1197	454	14	12	1204	3	1164	1382
MsG0580029492.01.T01	AT2G27150	57.064	1083	426	14	126	1204	1	1048	1221

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Find 281 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAAGGGATCAATC+AGG	0.418309	5:-97699000	MsG0580029492.01.T01:CDS
AAACCATGATAGATACTTGT+AGG	0.416337	5:-97698480	MsG0580029492.01.T01:CDS
AAAGGCATGGTATATTCAAG+TGG	0.616955	5:+97696173	None:intergenic
AAAGTTGTTGTTAATAATAC+TGG	0.296448	5:-97699093	MsG0580029492.01.T01:CDS
AAAGTTTGAATGGCTTGCAT+TGG	0.563510	5:-97698719	MsG0580029492.01.T01:CDS
AAATCAAAAGGGATCAATCA+GGG	0.587834	5:-97698999	MsG0580029492.01.T01:CDS
AAATGCTGCTTTCCTTGTTC+AGG	0.290746	5:-97698527	MsG0580029492.01.T01:CDS
AAATTCTATGATAATTCTTG+TGG	0.568554	5:-97696200	MsG0580029492.01.T01:CDS
AACAAGTTCTATCAAGTGGG+AGG	0.649091	5:-97695706	MsG0580029492.01.T01:CDS
AACACATCTAGCAATCTCTT+CGG	0.533493	5:+97697685	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAAAAGGGATCAATC+AGG	-	Chr5:97695122-97695141	MsG0580029492.01.T01:intron	30.0%
AAACCATGATAGATACTTGT+AGG	-	Chr5:97695642-97695661	MsG0580029492.01.T01:intron	30.0%
AAATCAAAAGGGATCAATCA+GGG	-	Chr5:97695123-97695142	MsG0580029492.01.T01:intron	30.0%
AACATGCTACATTAGTGATA+AGG	+	Chr5:97697346-97697365	None:intergenic	30.0%
AACGATGTACATAAACTTCA+AGG	+	Chr5:97694300-97694319	None:intergenic	30.0%
AAGATACTTGGAATGGAAAA+TGG	-	Chr5:97700434-97700453	MsG0580029492.01.T01:intron	30.0%
ACACTGTATGTTATCTTCAT+TGG	+	Chr5:97697589-97697608	None:intergenic	30.0%
AGAACACTTTCAAAACCTAA+CGG	+	Chr5:97695449-97695468	None:intergenic	30.0%
AGACATTGTACAAAGATACT+TGG	-	Chr5:97700422-97700441	MsG0580029492.01.T01:intron	30.0%
AGTTATGCAATTGTCTTCAT+CGG	+	Chr5:97697128-97697147	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	97693403	97700741	97693403	ID=MsG0580029492.01;Name=MsG0580029492.01
Chr5	mRNA	97693403	97700741	97693403	ID=MsG0580029492.01.T01;Parent=MsG0580029492.01;Name=MsG0580029492.01.T01;_AED=0.24;_eAED=0.24;_QI=138\|1\|1\|1\|1\|1\|10\|274\|1373
Chr5	exon	97693403	97693897	97693403	ID=MsG0580029492.01.T01:exon:25211;Parent=MsG0580029492.01.T01
Chr5	exon	97694529	97694718	97694529	ID=MsG0580029492.01.T01:exon:25210;Parent=MsG0580029492.01.T01
Chr5	exon	97695144	97695242	97695144	ID=MsG0580029492.01.T01:exon:25209;Parent=MsG0580029492.01.T01
Chr5	exon	97695354	97695449	97695354	ID=MsG0580029492.01.T01:exon:25208;Parent=MsG0580029492.01.T01
Chr5	exon	97695692	97696657	97695692	ID=MsG0580029492.01.T01:exon:25207;Parent=MsG0580029492.01.T01
Chr5	exon	97696859	97697077	97696859	ID=MsG0580029492.01.T01:exon:25206;Parent=MsG0580029492.01.T01
Chr5	exon	97697202	97697414	97697202	ID=MsG0580029492.01.T01:exon:25205;Parent=MsG0580029492.01.T01
Chr5	exon	97697664	97697923	97697664	ID=MsG0580029492.01.T01:exon:25204;Parent=MsG0580029492.01.T01
Chr5	exon	97698050	97699753	97698050	ID=MsG0580029492.01.T01:exon:25203;Parent=MsG0580029492.01.T01
Chr5	exon	97700450	97700741	97700450	ID=MsG0580029492.01.T01:exon:25202;Parent=MsG0580029492.01.T01
Chr5	five_prime_UTR	97700604	97700741	97700604	ID=MsG0580029492.01.T01:five_prime_utr;Parent=MsG0580029492.01.T01
Chr5	CDS	97700450	97700603	97700450	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97698050	97699753	97698050	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97697664	97697923	97697664	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97697202	97697414	97697202	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97696859	97697077	97696859	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97695692	97696657	97695692	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97695354	97695449	97695354	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97695144	97695242	97695144	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97694529	97694718	97694529	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	CDS	97693677	97693897	97693677	ID=MsG0580029492.01.T01:cds;Parent=MsG0580029492.01.T01
Chr5	three_prime_UTR	97693403	97693676	97693403	ID=MsG0580029492.01.T01:three_prime_utr;Parent=MsG0580029492.01.T01

Gene Sequence

>MsG0580029492.01.T01

ATGGACGTGAAGAAGAGTGAGAATCAAACAAGTTTGATTTTCTGTGTCAATGGTGAAAAGTTTGAGTTATCCAAAGTTGATCCGTCAACCACTTTGCTTGAGTTCTTACGTACTCAAACTCAATTCAAGAGTGTTAAACTCGGTTGTGGTGAAGGTGGTTGCGGAGCTTGTGTAGTTTTAGTCTCCAAATATGATCCATTGCTCGACAGAGTTGAGGATTTTACCGCGAGCTCTTGCCTCACACTACTTTGTAGCATACATGGATGTTCAATAACAACAAGTGAAGGCATTGGAAACAGCAAACAAGGATTCCATTCAATTCATGAAAGATTTGCAGGATTCCATGCTTCGCAATGCGGTTTCTGTACTCCCGGAATGTCTGTTTCCCTCTTCGGTGCTCTTGTCAACGCTGACAAGAGCAATTCTCCTGAGCCACCACCTGGTGTCTCAAAAATCACCGTTTCCAAGGCTGAAAAATCTATTGCAGGGAATCTTTGTCGCTGCACTGGTTACCGACCGATTGCTGATGCCTGCAAAAGTTTTGCAGCTGATGTTGATATGGAGGATCTCGGTTTGAACTCTTTCTGGAAAAAGGGAGAGAGCAAAGAATCGAAGCTTAGTAAGTTGCCTCGATACGATCGTGATCACAAGAATATCGAATTTCCTATGTTTTTGAAGGAAGTCAAACCTGATTTGTTTATAGCTTCTGAGAAACATAGTTGGAATAAACCTACTAGTTTAGAGGAGCTTCAAAGTTTATTGGAATTAAACCATGCCAATGAAACAAAGATAAAAGTTGTTGTTAATAATACTGGTATGGGATATTACAAAGATAAACAAGGCTATGATAAGTATATTGATATAAGTGGAATTTCTGAGCTTTCAAAAATCAAAAGGGATCAATCAGGGATTGAAATTGGAGCAGCGGTGAGTATATCTAAAGCAATTGAAGCATTACAGAAAGAAAGCACGATTGATTTTATCTCAGATTTTGTGATGATACTTGAAAAGATTGCTGATCATATGAGCAAAGTTGCGACGGGTTTTATTCGGAACACGGCTAGTGTAGGTGGCAATCTGGTGATGGCGCAAAAGAATAAGTTTCCTTCAGATATAGTTACTATACTTCTTGCTGTGGATTCAATGGTTCACATAATGACTGGTGCAAAGTTTGAATGGCTTGCATTGGAGGAGTTTCTTGAGAGACCACCGTTAGGTTTTGAAAGTGTTCTTTTAAGCATTAAGATTCCTAGTATCGAACTCTATACAAGCGAATCTTCGGAGACAAGAAGTAGTAAAGTCCTCTTTGAAACCTACCGTGCTTCTCCTCGACTGCTTGGAAACGCGCTTTCTTACTTAAATGCTGCTTTCCTTGTTCAGGTGTCTCCTTGCAAGGATACTCATGAAACCATGATAGATACTTGTAGGTTGTCTTTTGGTGGTTTTAGGAATAAGCATGCAATCAGAGCTAAACATGTTGAGAAGTTCTTATCAGGAAAGTCGTTAAGTGTTAGCAACCTGTATGAAGCTATCAACTTGCTTACAGATACTGCCGCTATTACACCTCAAGATGAAACCTTGACACATGGTTACCTTTCGAGTTTAGCAGTTGGTTTTATTTTTCAGTTCTTTAATTCACAGATTGAAAGTCCTGCAAGGATAACCAATGGTTATTTAAATGGATATACTCATTTGCCTTCGGCCGAGGCTTCCGACATAAAAGAGAATCAGAAGCAGGTGAAGCATAACAGATTTCCTACTTTATTGTCGTCCGGGAAGCAAGTCTTTGAAGCAGGCACCGAGTATAATCCGATTGGCGAGCCAGTCACAAAATCTGGTGCTGCGCTACAAGCTTCAGGCGAGGCTGTATATGTGGACGACATTCCATCACCAACAAATTGCCTACATGGAGCATATATTTATAGTGCAAAACCATTGGCAAAGATAACAAGTATAAAACTTGGGCAAGAATTGGAACTTGACGCAGTGAGGGACATCCTTACAAGTAAAGACATTCCCGATGGTGGGGAGAACCTTGGAGCAAAGAGTAGATTCGGTGCAGAACCTTTATTTGCCGAAGAGATTGCTAGATGTGTTGGAGATCGTCTTGCATTTGTGGTTGCAGATACTCAGAAACTTGCAGATATGGCTGCAAACTCCTCTGTTGTTGATTACAGTCTTGAAAATCTTGAACCACCTATCCTAAGTGTTGAAGCTGCTGTTGAAAGATCTAGTTTTTTTGAAGTTCCTCCATTTTTACGCCCAAAAAATCAAATTGGTGATGTATCAAAAGGAATGGCTGAAGCAGATCACAAGATTGTTTCTGCTGAGATAAAACTTGGATCTCAATACTATTTCTATATGGAGACACATACCGCGCTCGCTGTACCCGATGAAGACAATTGCATAACTGTTTACTTGTCAAGTCAGAGCCCCGAGTATGCACATTCTACTATAGCAAGATGCCTTGGCATTCCTGAAAATAATGTTAGAGTAATTACAAGAAGGGTTGGAGGAGGTTTTGGAGGAAAGGGCATGAAAGCAATACCTGGTGCTGTATCCTGTGCACTCGCAGCACAAAAATTACAGCGACCTGTAAGAATGTATCAAAATCGAAAGACAGATATGATAATGGCCGGAGGAAGACATCCAATGAAGATAACATACAGTGTCGGATTTAAGGATAATGGAAAGATTACTGCCTTACACCTTGAGATATTGGTCAACGCTGGGATTTATCCCGATGTTAGCGCAATAATGCCAAACAACATAGCTGGTGCGCTTAAAAAGTATGACTGGGGTGCACTCTCTTTAGATATAAAGTTATGCAGAACAAATCATCCTAGTAGATCTGCAGTGAGGGGGCCAGGTGACACGCAGGGATCATTCATCGCCGAAGGTATAATAGAAAATGTTGCAGCTACACTTTCGATGGAAGTGGATTCTGTTAGAAGCATTAATCTTCACACCTACACAAGTCTTAAGAAATTCTATGATAATTCTTGTGGTGAACCACTTGAATATACCATGCCTTTAATATGGAACAAGTTAGCTGTTTCTGCAAACTATGAACTGAGAGTAGACAAAGTGAAAGAGTTTAATAGACTTAACATTTGGAAGAAAAGAGGAATATCTCGAGTACCGGTGTTGTATGAGCTTAGTCTAAGACCAACTCCAGGAAAAGTTAGTATTTTATCCGATGGTTCTGTTGTTGTTGAAGTTGGAGGAATTGAAATGGGTCAGGGTTTATGGACAAAGGTGAAACAAATGACTGCGTTCGCGCTTGGTACAATTCAGTGTAATGGAACTGAAAGTCTTTTGGATAAAGTGAGGGTTGTACAATCTGATACCTTGAGTATGATTCAAGGGGGATTAACTGCCGGGAGCACTACATCAGAAGCAAGTTGTGCAGCAGTTAGGCTTAGCTGCAATATCTTAGTTGAAAGACTAAAACCTATCAAGAAGAAGCTCCAAGAGCAAACAAGTTCTATCAAGTGGGAGGATCTTATTCTTCAGGCATACATGCAAGCTGTGAATTTATCAGCTTCTTCATATTTTGTGCCCGGTAGTAATTCCGTTAAGTACATCAATTATGGCGCTGCAGTTAGTGAGGTGGAAATAGATCTTCTGACAGGAGAAACCAGATTTTTGCAAACAGATATTATTTATGACTGTGGACAAAGTCTCAACCCTGCTGTGGATTTAGGACAGATTGAAGGAGCTTTCATACAGGGGTTAGGGTTTTTCATGCTTGAAGAGTATGAAACAAACCTTGATGGTTTGGTTTTGCAAGATGGAACATGGAACTATAAAATCCCAACAATAGACACTATTCCTCAACAGTTCAATGTTGAAATCCTCAACAGTGAGCATCACCAACACAGAGTTCTCTCCTCAAAGGCATCTGGTGAGCCACCCTTGCTTCTAGCAGCTTCAGTTCACTGTGCCACAAGATCAGCTGTCAAAGAAGCCAGGAAACAGCTCCTATCATGGAGCAACTTAGATGATGGATCAGATTCAGCATTTCAGTTGGGGGTCCCTGCAACCATGCCTGTAGTAAAGGAAGTCATTGGACTAGACATTGTACAAAGATACTTGGAATGGAAAATGGACAACAAGTAA

Protein sequence

>MsG0580029492.01.T01

MDVKKSENQTSLIFCVNGEKFELSKVDPSTTLLEFLRTQTQFKSVKLGCGEGGCGACVVLVSKYDPLLDRVEDFTASSCLTLLCSIHGCSITTSEGIGNSKQGFHSIHERFAGFHASQCGFCTPGMSVSLFGALVNADKSNSPEPPPGVSKITVSKAEKSIAGNLCRCTGYRPIADACKSFAADVDMEDLGLNSFWKKGESKESKLSKLPRYDRDHKNIEFPMFLKEVKPDLFIASEKHSWNKPTSLEELQSLLELNHANETKIKVVVNNTGMGYYKDKQGYDKYIDISGISELSKIKRDQSGIEIGAAVSISKAIEALQKESTIDFISDFVMILEKIADHMSKVATGFIRNTASVGGNLVMAQKNKFPSDIVTILLAVDSMVHIMTGAKFEWLALEEFLERPPLGFESVLLSIKIPSIELYTSESSETRSSKVLFETYRASPRLLGNALSYLNAAFLVQVSPCKDTHETMIDTCRLSFGGFRNKHAIRAKHVEKFLSGKSLSVSNLYEAINLLTDTAAITPQDETLTHGYLSSLAVGFIFQFFNSQIESPARITNGYLNGYTHLPSAEASDIKENQKQVKHNRFPTLLSSGKQVFEAGTEYNPIGEPVTKSGAALQASGEAVYVDDIPSPTNCLHGAYIYSAKPLAKITSIKLGQELELDAVRDILTSKDIPDGGENLGAKSRFGAEPLFAEEIARCVGDRLAFVVADTQKLADMAANSSVVDYSLENLEPPILSVEAAVERSSFFEVPPFLRPKNQIGDVSKGMAEADHKIVSAEIKLGSQYYFYMETHTALAVPDEDNCITVYLSSQSPEYAHSTIARCLGIPENNVRVITRRVGGGFGGKGMKAIPGAVSCALAAQKLQRPVRMYQNRKTDMIMAGGRHPMKITYSVGFKDNGKITALHLEILVNAGIYPDVSAIMPNNIAGALKKYDWGALSLDIKLCRTNHPSRSAVRGPGDTQGSFIAEGIIENVAATLSMEVDSVRSINLHTYTSLKKFYDNSCGEPLEYTMPLIWNKLAVSANYELRVDKVKEFNRLNIWKKRGISRVPVLYELSLRPTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMTAFALGTIQCNGTESLLDKVRVVQSDTLSMIQGGLTAGSTTSEASCAAVRLSCNILVERLKPIKKKLQEQTSSIKWEDLILQAYMQAVNLSASSYFVPGSNSVKYINYGAAVSEVEIDLLTGETRFLQTDIIYDCGQSLNPAVDLGQIEGAFIQGLGFFMLEEYETNLDGLVLQDGTWNYKIPTIDTIPQQFNVEILNSEHHQHRVLSSKASGEPPLLLAASVHCATRSAVKEARKQLLSWSNLDDGSDSAFQLGVPATMPVVKEVIGLDIVQRYLEWKMDNK*