AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000490.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000490.01.T01 MTR_1g014730 73.290 307 16 6 18 322 1 243 7.66e-141 401
MsG0180000490.01.T01 MTR_1g014730 73.290 307 16 6 18 322 1 243 3.27e-140 402
MsG0180000490.01.T01 MTR_8g070480 29.798 198 93 4 63 260 81 232 9.52e-23 97.8
MsG0180000490.01.T01 MTR_8g070480 29.798 198 93 4 63 260 81 232 1.59e-22 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000490.01.T01 AT3G43540 50.000 246 58 5 78 322 36 217 4.36e-66 212
MsG0180000490.01.T01 AT3G43540 46.970 198 41 4 125 322 12 145 5.70e-47 160
MsG0180000490.01.T01 AT5G47860 29.448 163 73 2 98 260 100 220 8.52e-17 81.3

Find 56 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATCTTATAGAGTTAT+TGG 0.162767 1:-6882671 MsG0180000490.01.T01:CDS
GCTATTCCTCAACTTACTTA+TGG 0.167683 1:-6882810 MsG0180000490.01.T01:CDS
TTTCTAGCTATCGAGTAAAT+TGG 0.225245 1:+6880457 None:intergenic
TTGGATACACTGCTCACATC+TGG 0.279191 1:-6882553 MsG0180000490.01.T01:CDS
TGATCAAATGTCACATTATA+AGG 0.308290 1:+6882619 None:intergenic
GATTATAAAACTTTATAATC+TGG 0.314819 1:-6882078 MsG0180000490.01.T01:CDS
CTATTCCTCAACTTACTTAT+GGG 0.335315 1:-6882809 MsG0180000490.01.T01:intron
GAAAAGGTATGTATCTCTTA+TGG 0.338111 1:-6881933 MsG0180000490.01.T01:intron
TGACAAGTTTCATTCTTGTT+TGG 0.339093 1:-6882572 MsG0180000490.01.T01:CDS
AGGTACTTGTCTATGTTTCA+TGG 0.346893 1:-6883056 MsG0180000490.01.T01:CDS
GCTTCCACTATTGCATCATC+TGG 0.366965 1:+6880484 None:intergenic
TAAGGAACCGCCTCTGTTGC+TGG 0.371759 1:+6881877 None:intergenic
CTATGACCAACAGAGAAAAT+AGG 0.381688 1:+6882487 None:intergenic
AAGCTGAGCAGGTGACAAAT+TGG 0.383955 1:+6882519 None:intergenic
CTCTCCCTTTGAAGAATACT+AGG 0.391651 1:-6883076 MsG0180000490.01.T01:CDS
ATTTCCATTGTGAAGTGTTC+TGG 0.398655 1:+6883122 None:intergenic
ATGAATTTGATTATAGCTCT+TGG 0.412859 1:+6882852 None:intergenic
TTGTCACCTGCTCAGCTTGG+AGG 0.413742 1:-6882514 MsG0180000490.01.T01:CDS
TTTGATTATAGCTCTTGGTT+TGG 0.424188 1:+6882857 None:intergenic
GAAGTTAAAATTTAGTTTGA+AGG 0.427290 1:-6881681 MsG0180000490.01.T01:CDS
GAGAGTGAATTTGAAATTTG+AGG 0.439754 1:+6883094 None:intergenic
GGCGGTTCCTTACTTTGAGC+AGG 0.447793 1:-6881866 MsG0180000490.01.T01:intron
GTTAATACCTGCTCAAAGTA+AGG 0.449253 1:+6881859 None:intergenic
TTAAAATTTAGTTTGAAGGA+TGG 0.450842 1:-6881677 MsG0180000490.01.T01:CDS
GGTACTTGTCTATGTTTCAT+GGG 0.457860 1:-6883055 MsG0180000490.01.T01:CDS
GATTATAGCTCTTGGTTTGG+TGG 0.459125 1:+6882860 None:intergenic
AGAACACTTCACAATGGAAA+TGG 0.481977 1:-6883120 MsG0180000490.01.T01:CDS
AGAGCTATAATCAAATTCAT+TGG 0.482982 1:-6882849 MsG0180000490.01.T01:CDS
ACAAAACTTTATGCGGCGAC+TGG 0.486637 1:+6881708 None:intergenic
ATAGCTTCTGATATGTATGT+TGG 0.489993 1:-6882948 MsG0180000490.01.T01:CDS
GGAAGACCTCCAAGCTGAGC+AGG 0.505657 1:+6882508 None:intergenic
AATTTGTCACCTGCTCAGCT+TGG 0.510625 1:-6882517 MsG0180000490.01.T01:CDS
TTCATTGGTGGTGCTTTCGT+TGG 0.512277 1:-6882834 MsG0180000490.01.T01:CDS
TGGATACACTGCTCACATCT+GGG 0.513185 1:-6882552 MsG0180000490.01.T01:CDS
GCTCTTGGTTTGGTGGAAGT+AGG 0.513990 1:+6882867 None:intergenic
TGCATCATCTGGCTGACAGC+AGG 0.514257 1:+6880495 None:intergenic
GGTTTGGTGGAAGTAGGTGG+TGG 0.514744 1:+6882873 None:intergenic
TTCCATAACAAAACTTTATG+CGG 0.516016 1:+6881701 None:intergenic
GCAAGGCATATAGAGTCTAC+TGG 0.517378 1:+6881730 None:intergenic
GCGCAATCTCAGGTGATACC+TGG 0.531700 1:+6880430 None:intergenic
CTTGGTTTGGTGGAAGTAGG+TGG 0.537073 1:+6882870 None:intergenic
TCAGCCAGATGATGCAATAG+TGG 0.538878 1:-6880488 MsG0180000490.01.T01:CDS
AAGTACCTAGTATTCTTCAA+AGG 0.548004 1:+6883071 None:intergenic
AGTACCTAGTATTCTTCAAA+GGG 0.551616 1:+6883072 None:intergenic
ATAGAGTTATTGGCAAAGGA+AGG 0.565372 1:-6882661 MsG0180000490.01.T01:CDS
GCTATAATCAAATTCATTGG+TGG 0.569849 1:-6882846 MsG0180000490.01.T01:CDS
TCTTATAGAGTTATTGGCAA+AGG 0.576308 1:-6882665 MsG0180000490.01.T01:CDS
ACTTTATGCGGCGACTGGCA+AGG 0.582367 1:+6881713 None:intergenic
AGGTATGTATCTCTTATGGA+AGG 0.612519 1:-6881929 MsG0180000490.01.T01:CDS
GCACTTCTTCAAGTACTCAC+AGG 0.613217 1:-6882210 MsG0180000490.01.T01:CDS
CAATACCCATAAGTAAGTTG+AGG 0.622732 1:+6882804 None:intergenic
GCAGGTGACAAATTGGATTG+AGG 0.624270 1:+6882526 None:intergenic
CAACAACAGACCAGCAACAG+AGG 0.640280 1:-6881887 MsG0180000490.01.T01:CDS
CTTTCCAGAACACTTCACAA+TGG 0.642090 1:-6883126 MsG0180000490.01.T01:CDS
TCGATAGCTAGAAATGCACC+AGG 0.665256 1:-6880448 MsG0180000490.01.T01:CDS
CAACAGACCAGCAACAGAGG+CGG 0.696154 1:-6881884 MsG0180000490.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATTATTCAATG+CGG - Chr1:6882386-6882405 MsG0180000490.01.T01:intron 10.0%
!! TTACATTAAAATAAACAAAA+GGG + Chr1:6880834-6880853 None:intergenic 10.0%
!! TTTACATTAAAATAAACAAA+AGG + Chr1:6880835-6880854 None:intergenic 10.0%
!! AAACTAACATTGATATTTAA+AGG - Chr1:6882259-6882278 MsG0180000490.01.T01:intron 15.0%
!! GATTATAAAACTTTATAATC+TGG - Chr1:6881518-6881537 MsG0180000490.01.T01:intron 15.0%
!! TAAAAAAAATTATTCAATGC+GGG - Chr1:6882387-6882406 MsG0180000490.01.T01:intron 15.0%
!!! AAACAATGTTTTATACTTTT+AGG + Chr1:6881958-6881977 None:intergenic 15.0%
!!! ATAAAGTAATTTTTTGCATT+TGG + Chr1:6882194-6882213 None:intergenic 15.0%
!!! TAAAAGTATAAAACATTGTT+TGG - Chr1:6881957-6881976 MsG0180000490.01.T01:intron 15.0%
!!! TAAAGTAATTTTTTGCATTT+GGG + Chr1:6882193-6882212 None:intergenic 15.0%
!! AAAAAAAATTATTCAATGCG+GGG - Chr1:6882388-6882407 MsG0180000490.01.T01:intron 20.0%
!! AAAAATCAATCACTCTATTA+AGG + Chr1:6881824-6881843 None:intergenic 20.0%
!! ATATATATTATCCAGGTTAA+AGG + Chr1:6882569-6882588 None:intergenic 20.0%
!! ATCTATCTATGAACAAAAAA+GGG - Chr1:6881475-6881494 MsG0180000490.01.T01:intron 20.0%
!! CTTATAGTTATATCAATTCA+AGG - Chr1:6881632-6881651 MsG0180000490.01.T01:intron 20.0%
!! TAGATATCTTATAGAGTTAT+TGG - Chr1:6880925-6880944 MsG0180000490.01.T01:intron 20.0%
!! TATCTATCTATGAACAAAAA+AGG - Chr1:6881474-6881493 MsG0180000490.01.T01:intron 20.0%
!! TCAATTAGTATAAGCATTAT+CGG - Chr1:6882817-6882836 MsG0180000490.01.T01:CDS 20.0%
!! TGTGTAAATATATATTATCC+AGG + Chr1:6882576-6882595 None:intergenic 20.0%
!! TTTACACAAAGTAATTAAAG+TGG - Chr1:6882588-6882607 MsG0180000490.01.T01:CDS 20.0%
!!! AAGTTTGATTTTTTTCATGT+TGG - Chr1:6880853-6880872 MsG0180000490.01.T01:intron 20.0%
!!! GAAGTTAAAATTTAGTTTGA+AGG - Chr1:6881915-6881934 MsG0180000490.01.T01:CDS 20.0%
!!! TCATTTTCTCAAATTATCAT+TGG - Chr1:6881240-6881259 MsG0180000490.01.T01:intron 20.0%
!!! TGTTCGAATGTTTTAATTTA+TGG - Chr1:6881559-6881578 MsG0180000490.01.T01:intron 20.0%
!!! TTAAAATTTAGTTTGAAGGA+TGG - Chr1:6881919-6881938 MsG0180000490.01.T01:CDS 20.0%
! AAAGTAATTAAAGTGGTGAA+TGG - Chr1:6882595-6882614 MsG0180000490.01.T01:CDS 25.0%
! AGAGCTATAATCAAATTCAT+TGG - Chr1:6880747-6880766 MsG0180000490.01.T01:intron 25.0%
! AGCTTTCTTAAGCATATTAT+TGG + Chr1:6882756-6882775 None:intergenic 25.0%
! ATGAATTTGATTATAGCTCT+TGG + Chr1:6880747-6880766 None:intergenic 25.0%
! CTAAATATAACCACATATAC+TGG + Chr1:6881215-6881234 None:intergenic 25.0%
! GGTATATATGTGCAAATAAT+GGG - Chr1:6882728-6882747 MsG0180000490.01.T01:intron 25.0%
! GTATGAAGATGAATGATATA+AGG + Chr1:6882997-6883016 None:intergenic 25.0%
! TATATGAATGATTCGTAGTT+TGG - Chr1:6881299-6881318 MsG0180000490.01.T01:intron 25.0%
! TGATCAAATGTCACATTATA+AGG + Chr1:6880980-6880999 None:intergenic 25.0%
! TGGTATATATGTGCAAATAA+TGG - Chr1:6882727-6882746 MsG0180000490.01.T01:intron 25.0%
! TTCCATAACAAAACTTTATG+CGG + Chr1:6881898-6881917 None:intergenic 25.0%
! TTTGTTTCAATTTGTAGCAA+TGG - Chr1:6881362-6881381 MsG0180000490.01.T01:intron 25.0%
!! AATACTGGTTATGAATATGT+TGG - Chr1:6882643-6882662 MsG0180000490.01.T01:CDS 25.0%
!!! AATAGAGTGATTGATTTTTG+TGG - Chr1:6881825-6881844 MsG0180000490.01.T01:intron 25.0%
AAAGGAGCAACTAAATCAAT+CGG - Chr1:6882277-6882296 MsG0180000490.01.T01:intron 30.0%
AAGGCCATTAAAATTAAGTC+AGG + Chr1:6882978-6882997 None:intergenic 30.0%
AAGTACCTAGTATTCTTCAA+AGG + Chr1:6880528-6880547 None:intergenic 30.0%
AATCTAAGCATGCTAAATAC+TGG - Chr1:6882628-6882647 MsG0180000490.01.T01:CDS 30.0%
AGTACCTAGTATTCTTCAAA+GGG + Chr1:6880527-6880546 None:intergenic 30.0%
ATAGCTTCTGATATGTATGT+TGG - Chr1:6880648-6880667 MsG0180000490.01.T01:intron 30.0%
ATGCATTACAACATTTCTCT+AGG - Chr1:6882335-6882354 MsG0180000490.01.T01:intron 30.0%
ATTCAAGGAATGTGATGAAA+AGG - Chr1:6881647-6881666 MsG0180000490.01.T01:intron 30.0%
ATTTAGCAGAGCTAAAGATT+TGG - Chr1:6882707-6882726 MsG0180000490.01.T01:intron 30.0%
CAGAAAAATAACCAAACCTT+AGG + Chr1:6881434-6881453 None:intergenic 30.0%
CTATTCCTCAACTTACTTAT+GGG - Chr1:6880787-6880806 MsG0180000490.01.T01:intron 30.0%
GCTATAATCAAATTCATTGG+TGG - Chr1:6880750-6880769 MsG0180000490.01.T01:intron 30.0%
TACCAATCTTACTGGAATTA+AGG - Chr1:6881322-6881341 MsG0180000490.01.T01:intron 30.0%
TACCTTAATTCCAGTAAGAT+TGG + Chr1:6881327-6881346 None:intergenic 30.0%
TCTTATAGAGTTATTGGCAA+AGG - Chr1:6880931-6880950 MsG0180000490.01.T01:intron 30.0%
TGACAAGTTTCATTCTTGTT+TGG - Chr1:6881024-6881043 MsG0180000490.01.T01:intron 30.0%
TGCATTACAACATTTCTCTA+GGG - Chr1:6882336-6882355 MsG0180000490.01.T01:intron 30.0%
TGTTAAAGTGATCATATTGC+AGG - Chr1:6882309-6882328 MsG0180000490.01.T01:intron 30.0%
TTTGATTATAGCTCTTGGTT+TGG + Chr1:6880742-6880761 None:intergenic 30.0%
! ACATTAAATTTTGCTGCTGA+TGG - Chr1:6882887-6882906 MsG0180000490.01.T01:CDS 30.0%
! GAAAAGGTATGTATCTCTTA+TGG - Chr1:6881663-6881682 MsG0180000490.01.T01:CDS 30.0%
! GAGAGTGAATTTGAAATTTG+AGG + Chr1:6880505-6880524 None:intergenic 30.0%
! GATTTTTGTGGTTGTGATTA+AGG - Chr1:6881837-6881856 MsG0180000490.01.T01:intron 30.0%
! GCTTCCTGACTTAATTTTAA+TGG - Chr1:6882971-6882990 MsG0180000490.01.T01:CDS 30.0%
! TAAACTTTCCAGTAAGTTGA+TGG + Chr1:6882847-6882866 None:intergenic 30.0%
! TGACATTTTGTGTTTAACCT+AGG - Chr1:6881991-6882010 MsG0180000490.01.T01:intron 30.0%
!! ATTTTCTGAGAAACTACCTA+AGG - Chr1:6881415-6881434 MsG0180000490.01.T01:intron 30.0%
!! GTTTTGAATCACAATTGACA+CGG + Chr1:6883055-6883074 None:intergenic 30.0%
!! TTTCTAGCTATCGAGTAAAT+TGG + Chr1:6883142-6883161 None:intergenic 30.0%
!!! CTAAGGTTTGGTTATTTTTC+TGG - Chr1:6881432-6881451 MsG0180000490.01.T01:intron 30.0%
!!! GTAATTTTTTGCATTTGGGA+CGG + Chr1:6882189-6882208 None:intergenic 30.0%
!!! TAATTTTTTGCATTTGGGAC+GGG + Chr1:6882188-6882207 None:intergenic 30.0%
AAAATTATTCAATGCGGGGA+TGG - Chr1:6882392-6882411 MsG0180000490.01.T01:intron 35.0%
AAATTATTCAATGCGGGGAT+GGG - Chr1:6882393-6882412 MsG0180000490.01.T01:intron 35.0%
AAGTATATGAGAATCGGGTA+TGG - Chr1:6882498-6882517 MsG0180000490.01.T01:CDS 35.0%
ACGGGTAAGTATATGAGAAT+CGG - Chr1:6882492-6882511 MsG0180000490.01.T01:CDS 35.0%
AGAACACTTCACAATGGAAA+TGG - Chr1:6880476-6880495 MsG0180000490.01.T01:CDS 35.0%
AGGTACTTGTCTATGTTTCA+TGG - Chr1:6880540-6880559 MsG0180000490.01.T01:intron 35.0%
AGGTATGTATCTCTTATGGA+AGG - Chr1:6881667-6881686 MsG0180000490.01.T01:CDS 35.0%
AGTATATGAGAATCGGGTAT+GGG - Chr1:6882499-6882518 MsG0180000490.01.T01:CDS 35.0%
ATAGAGTTATTGGCAAAGGA+AGG - Chr1:6880935-6880954 MsG0180000490.01.T01:intron 35.0%
ATTAAAGTGGTGAATGGTGA+TGG - Chr1:6882601-6882620 MsG0180000490.01.T01:CDS 35.0%
CAATACCCATAAGTAAGTTG+AGG + Chr1:6880795-6880814 None:intergenic 35.0%
CGAAATATCAATGTCGTGTT+TGG - Chr1:6881266-6881285 MsG0180000490.01.T01:intron 35.0%
CTATGACCAACAGAGAAAAT+AGG + Chr1:6881112-6881131 None:intergenic 35.0%
GCATTACAACATTTCTCTAG+GGG - Chr1:6882337-6882356 MsG0180000490.01.T01:intron 35.0%
GCTATTCCTCAACTTACTTA+TGG - Chr1:6880786-6880805 MsG0180000490.01.T01:intron 35.0%
GGTACTTGTCTATGTTTCAT+GGG - Chr1:6880541-6880560 MsG0180000490.01.T01:intron 35.0%
GTTAATACCTGCTCAAAGTA+AGG + Chr1:6881740-6881759 None:intergenic 35.0%
TACTGGACAGTTAGAGTAAA+GGG + Chr1:6882925-6882944 None:intergenic 35.0%
TAGTTTGGTACCAATCTTAC+TGG - Chr1:6881314-6881333 MsG0180000490.01.T01:intron 35.0%
TATTATCCAGGTTAAAGGCA+TGG + Chr1:6882564-6882583 None:intergenic 35.0%
! AGGAAGCATGTTTATTTGAG+TGG + Chr1:6882958-6882977 None:intergenic 35.0%
! ATTTCCATTGTGAAGTGTTC+TGG + Chr1:6880477-6880496 None:intergenic 35.0%
! CTATTTTCTCTGTTGGTCAT+AGG - Chr1:6881110-6881129 MsG0180000490.01.T01:intron 35.0%
! TTTTCCCCGATTTCAAAACA+CGG - Chr1:6882110-6882129 MsG0180000490.01.T01:intron 35.0%
! TTTTGTGTTTAACCTAGGCA+TGG - Chr1:6881996-6882015 MsG0180000490.01.T01:intron 35.0%
!! AAAAGGGTTTTATCGAGACA+TGG - Chr1:6881491-6881510 MsG0180000490.01.T01:intron 35.0%
!!! AAAGGAAGGTTTTGTTGTTG+TGG - Chr1:6880949-6880968 MsG0180000490.01.T01:intron 35.0%
AAAACCCGTCAAATTGGGTT+TGG + Chr1:6882056-6882075 None:intergenic 40.0%
AATTATTCAATGCGGGGATG+GGG - Chr1:6882394-6882413 MsG0180000490.01.T01:intron 40.0%
ACTGGACAGTTAGAGTAAAG+GGG + Chr1:6882924-6882943 None:intergenic 40.0%
CACATATACTGGTGTCTTGT+CGG + Chr1:6881204-6881223 None:intergenic 40.0%
CGATTTCAAAACACGGGTAT+GGG - Chr1:6882117-6882136 MsG0180000490.01.T01:intron 40.0%
CGGGTAAGTATATGAGAATC+GGG - Chr1:6882493-6882512 MsG0180000490.01.T01:CDS 40.0%
CTGAGAAACTACCTAAGGTT+TGG - Chr1:6881420-6881439 MsG0180000490.01.T01:intron 40.0%
CTTTCCAGAACACTTCACAA+TGG - Chr1:6880470-6880489 MsG0180000490.01.T01:CDS 40.0%
GTACTGGACAGTTAGAGTAA+AGG + Chr1:6882926-6882945 None:intergenic 40.0%
GTATATGAGAATCGGGTATG+GGG - Chr1:6882500-6882519 MsG0180000490.01.T01:CDS 40.0%
TTCAATTTCTCATCCCCGTT+GGG - Chr1:6882456-6882475 MsG0180000490.01.T01:intron 40.0%
TTTCCCCGATTTCAAAACAC+GGG - Chr1:6882111-6882130 MsG0180000490.01.T01:intron 40.0%
! CTCTCCCTTTGAAGAATACT+AGG - Chr1:6880520-6880539 MsG0180000490.01.T01:intron 40.0%
! GGTCTTCCTATTTTCTCTGT+TGG - Chr1:6881103-6881122 MsG0180000490.01.T01:intron 40.0%
! GTACTGACACTTCAGATTCA+AGG - Chr1:6881143-6881162 MsG0180000490.01.T01:intron 40.0%
!! GATTATAGCTCTTGGTTTGG+TGG + Chr1:6880739-6880758 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG - Chr1:6882081-6882100 MsG0180000490.01.T01:intron 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG + Chr1:6882117-6882136 None:intergenic 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG + Chr1:6882118-6882137 None:intergenic 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG + Chr1:6882119-6882138 None:intergenic 40.0%
!!! CGCCGCATAAAGTTTTGTTA+TGG - Chr1:6881893-6881912 MsG0180000490.01.T01:CDS 40.0%
!!! GGTTATTTTTCTGGCTGCTA+GGG - Chr1:6881441-6881460 MsG0180000490.01.T01:intron 40.0%
!!! TGGTTATTTTTCTGGCTGCT+AGG - Chr1:6881440-6881459 MsG0180000490.01.T01:intron 40.0%
AAGCTGAGCAGGTGACAAAT+TGG + Chr1:6881080-6881099 None:intergenic 45.0%
AATTTGTCACCTGCTCAGCT+TGG - Chr1:6881079-6881098 MsG0180000490.01.T01:intron 45.0%
ACAAAACTTTATGCGGCGAC+TGG + Chr1:6881891-6881910 None:intergenic 45.0%
ACGAGGAAAACCCGTCAAAT+TGG + Chr1:6882062-6882081 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG - Chr1:6882048-6882067 MsG0180000490.01.T01:CDS 45.0%
CCGATTTCAAAACACGGGTA+TGG - Chr1:6882116-6882135 MsG0180000490.01.T01:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG - Chr1:6882049-6882068 MsG0180000490.01.T01:CDS 45.0%
CGACAAGACACCAGTATATG+TGG - Chr1:6881202-6881221 MsG0180000490.01.T01:intron 45.0%
CGAGGAAAACCCGTCAAATT+GGG + Chr1:6882061-6882080 None:intergenic 45.0%
CTTCAATTTCTCATCCCCGT+TGG - Chr1:6882455-6882474 MsG0180000490.01.T01:intron 45.0%
CTTCAGATTCAAGGCGTATC+CGG - Chr1:6881152-6881171 MsG0180000490.01.T01:intron 45.0%
GCAAGGCATATAGAGTCTAC+TGG + Chr1:6881869-6881888 None:intergenic 45.0%
GCACTTCTTCAAGTACTCAC+AGG - Chr1:6881386-6881405 MsG0180000490.01.T01:intron 45.0%
GCAGGTGACAAATTGGATTG+AGG + Chr1:6881073-6881092 None:intergenic 45.0%
GCTTCCACTATTGCATCATC+TGG + Chr1:6883115-6883134 None:intergenic 45.0%
TCAGCCAGATGATGCAATAG+TGG - Chr1:6883108-6883127 MsG0180000490.01.T01:CDS 45.0%
TCGATAGCTAGAAATGCACC+AGG - Chr1:6883148-6883167 MsG0180000490.01.T01:CDS 45.0%
TCGGCATACCATCAACTTAC+TGG - Chr1:6882836-6882855 MsG0180000490.01.T01:CDS 45.0%
TGGATACACTGCTCACATCT+GGG - Chr1:6881044-6881063 MsG0180000490.01.T01:intron 45.0%
TTCAAAACACGGGTATGGGA+CGG - Chr1:6882121-6882140 MsG0180000490.01.T01:intron 45.0%
TTGGATACACTGCTCACATC+TGG - Chr1:6881043-6881062 MsG0180000490.01.T01:intron 45.0%
! AGGTTAAAGGCATGGCAATG+GGG + Chr1:6882556-6882575 None:intergenic 45.0%
! CAGGTTAAAGGCATGGCAAT+GGG + Chr1:6882557-6882576 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG + Chr1:6882051-6882070 None:intergenic 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG + Chr1:6882050-6882069 None:intergenic 45.0%
! TTTGCATTTGGGACGGGTTT+GGG + Chr1:6882182-6882201 None:intergenic 45.0%
!! TTCATTGGTGGTGCTTTCGT+TGG - Chr1:6880762-6880781 MsG0180000490.01.T01:intron 45.0%
!! TTTTGCATTTGGGACGGGTT+TGG + Chr1:6882183-6882202 None:intergenic 45.0%
!!! GGAAGGTTTTGTTGTTGTGG+TGG - Chr1:6880952-6880971 MsG0180000490.01.T01:intron 45.0%
!!! GGGTTTTCCTCGTTTTGACT+GGG - Chr1:6882069-6882088 MsG0180000490.01.T01:CDS 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG - Chr1:6882080-6882099 MsG0180000490.01.T01:CDS 45.0%
!!! TCCTCGTTTTGACTGGGTTT+GGG - Chr1:6882075-6882094 MsG0180000490.01.T01:CDS 45.0%
!!! TTCCTCGTTTTGACTGGGTT+TGG - Chr1:6882074-6882093 MsG0180000490.01.T01:CDS 45.0%
ACCCAAACCCAGTCAAAACG+AGG + Chr1:6882079-6882098 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTT+TGG - Chr1:6882086-6882105 MsG0180000490.01.T01:intron 50.0%
ATCCGGTGTTCGACACATGT+CGG - Chr1:6881169-6881188 MsG0180000490.01.T01:intron 50.0%
ATGAGAATCGGGTATGGGGA+CGG - Chr1:6882504-6882523 MsG0180000490.01.T01:CDS 50.0%
CAACAACAGACCAGCAACAG+AGG - Chr1:6881709-6881728 MsG0180000490.01.T01:CDS 50.0%
CCATTGCCATGCCTTTAACC+TGG - Chr1:6882555-6882574 MsG0180000490.01.T01:CDS 50.0%
CTGGGTTTGGGTATGGGTTT+GGG - Chr1:6882087-6882106 MsG0180000490.01.T01:intron 50.0%
GTTACCCTACCCATACCCAA+CGG + Chr1:6882474-6882493 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG - Chr1:6882473-6882492 MsG0180000490.01.T01:intron 50.0%
TCAAAACACGGGTATGGGAC+GGG - Chr1:6882122-6882141 MsG0180000490.01.T01:intron 50.0%
TGAGTGGTCTGATGCTGTAC+TGG + Chr1:6882942-6882961 None:intergenic 50.0%
TTACCCTACCCATACCCAAC+GGG + Chr1:6882473-6882492 None:intergenic 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - Chr1:6882462-6882481 MsG0180000490.01.T01:intron 50.0%
TTGGGTATGGGTAGGGTAAC+GGG - Chr1:6882474-6882493 MsG0180000490.01.T01:intron 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - Chr1:6882461-6882480 MsG0180000490.01.T01:intron 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG + Chr1:6882177-6882196 None:intergenic 50.0%
! CCAGGTTAAAGGCATGGCAA+TGG + Chr1:6882558-6882577 None:intergenic 50.0%
! TGCATTGATGTCCTGCAGCT+AGG - Chr1:6883077-6883096 MsG0180000490.01.T01:CDS 50.0%
! TTAAAGGCATGGCAATGGGG+CGG + Chr1:6882553-6882572 None:intergenic 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG + Chr1:6882176-6882195 None:intergenic 50.0%
!! AAATTGGGTTTGGTTCGGGC+GGG + Chr1:6882046-6882065 None:intergenic 50.0%
!! CAAATTGGGTTTGGTTCGGG+CGG + Chr1:6882047-6882066 None:intergenic 50.0%
!! CGGGTTTTCCTCGTTTTGAC+TGG - Chr1:6882068-6882087 MsG0180000490.01.T01:CDS 50.0%
!! CTTGGTTTGGTGGAAGTAGG+TGG + Chr1:6880729-6880748 None:intergenic 50.0%
!! GCTCTTGGTTTGGTGGAAGT+AGG + Chr1:6880732-6880751 None:intergenic 50.0%
!! GGGACGGGTAATGGGTATAT+AGG - Chr1:6882137-6882156 MsG0180000490.01.T01:intron 50.0%
!!! TGGGTTTTGTTGCCATGCCT+AGG + Chr1:6882011-6882030 None:intergenic 50.0%
ACGGGTATGGGACGGGTAAT+GGG - Chr1:6882129-6882148 MsG0180000490.01.T01:intron 55.0%
ACGGGTTTGGGTATGGGTTC+GGG + Chr1:6882170-6882189 None:intergenic 55.0%
ACTTTATGCGGCGACTGGCA+AGG + Chr1:6881886-6881905 None:intergenic 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - Chr1:6882467-6882486 MsG0180000490.01.T01:intron 55.0%
ATTCAATGCGGGGATGGGGA+TGG - Chr1:6882398-6882417 MsG0180000490.01.T01:intron 55.0%
CAACAGACCAGCAACAGAGG+CGG - Chr1:6881712-6881731 MsG0180000490.01.T01:CDS 55.0%
CACCGACATGTGTCGAACAC+CGG + Chr1:6881174-6881193 None:intergenic 55.0%
GGCAACAAAACCCATACCCG+TGG - Chr1:6882017-6882036 MsG0180000490.01.T01:intron 55.0%
GGCGGTTCCTTACTTTGAGC+AGG - Chr1:6881730-6881749 MsG0180000490.01.T01:CDS 55.0%
TAAGGAACCGCCTCTGTTGC+TGG + Chr1:6881722-6881741 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG + Chr1:6882472-6882491 None:intergenic 55.0%
TGAAGCCCATCATCCCCGAA+GGG + Chr1:6882440-6882459 None:intergenic 55.0%
TGAGAATCGGGTATGGGGAC+GGG - Chr1:6882505-6882524 MsG0180000490.01.T01:CDS 55.0%
TGCATCATCTGGCTGACAGC+AGG + Chr1:6883104-6883123 None:intergenic 55.0%
TTCAATGCGGGGATGGGGAT+GGG - Chr1:6882399-6882418 MsG0180000490.01.T01:intron 55.0%
TTGAAGCCCATCATCCCCGA+AGG + Chr1:6882441-6882460 None:intergenic 55.0%
TTGTCACCTGCTCAGCTTGG+AGG - Chr1:6881082-6881101 MsG0180000490.01.T01:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG + Chr1:6882165-6882184 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG + Chr1:6882171-6882190 None:intergenic 55.0%
! TAAAGGCATGGCAATGGGGC+GGG + Chr1:6882552-6882571 None:intergenic 55.0%
!! GGTTTGGTGGAAGTAGGTGG+TGG + Chr1:6880726-6880745 None:intergenic 55.0%
CACGGGTATGGGACGGGTAA+TGG - Chr1:6882128-6882147 MsG0180000490.01.T01:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG - Chr1:6882466-6882485 MsG0180000490.01.T01:intron 60.0%
CCATCATCCCCGAAGGGTTC+GGG + Chr1:6882434-6882453 None:intergenic 60.0%
CCCATCATCCCCGAAGGGTT+CGG + Chr1:6882435-6882454 None:intergenic 60.0%
CCGAACCCTTCGGGGATGAT+GGG - Chr1:6882432-6882451 MsG0180000490.01.T01:intron 60.0%
CGGGTTTGGGTATGGGTTCG+GGG + Chr1:6882169-6882188 None:intergenic 60.0%
GAGAATCGGGTATGGGGACG+GGG - Chr1:6882506-6882525 MsG0180000490.01.T01:CDS 60.0%
GGAAGACCTCCAAGCTGAGC+AGG + Chr1:6881091-6881110 None:intergenic 60.0%
GTTTGGGTATGGGTTCGGGG+TGG + Chr1:6882166-6882185 None:intergenic 60.0%
TCAATGCGGGGATGGGGATG+GGG - Chr1:6882400-6882419 MsG0180000490.01.T01:intron 60.0%
TGACAGCAGGACCTAGCTGC+AGG + Chr1:6883091-6883110 None:intergenic 60.0%
! AAAGGCATGGCAATGGGGCG+GGG + Chr1:6882551-6882570 None:intergenic 60.0%
!! TTGGTTCGGGCGGGTAACCA+CGG + Chr1:6882037-6882056 None:intergenic 60.0%
CCCGAACCCTTCGGGGATGA+TGG - Chr1:6882431-6882450 MsG0180000490.01.T01:intron 65.0%
CGGGGATACCCGAACCCTTC+GGG - Chr1:6882423-6882442 MsG0180000490.01.T01:intron 65.0%
GCGGGGATACCCGAACCCTT+CGG - Chr1:6882422-6882441 MsG0180000490.01.T01:intron 65.0%
GGGCGGGTAACCACGGGTAT+GGG + Chr1:6882030-6882049 None:intergenic 65.0%
GGGGATACCCGAACCCTTCG+GGG - Chr1:6882424-6882443 MsG0180000490.01.T01:intron 65.0%
! TGGTTCGGGCGGGTAACCAC+GGG + Chr1:6882036-6882055 None:intergenic 65.0%
ATGCGGGGATGGGGATGGGG+CGG - Chr1:6882403-6882422 MsG0180000490.01.T01:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG + Chr1:6882546-6882565 None:intergenic 70.0%
CGGGCGGGTAACCACGGGTA+TGG + Chr1:6882031-6882050 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG + Chr1:6882547-6882566 None:intergenic 70.0%
CAATGGGGCGGGGTGGGGAC+GGG + Chr1:6882541-6882560 None:intergenic 75.0%
GCAATGGGGCGGGGTGGGGA+CGG + Chr1:6882542-6882561 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG + Chr1:6882548-6882567 None:intergenic 75.0%
TGCGGGGATGGGGATGGGGC+GGG - Chr1:6882404-6882423 MsG0180000490.01.T01:intron 75.0%
! GCGGGGATGGGGATGGGGCG+GGG - Chr1:6882405-6882424 MsG0180000490.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 6880438 6883180 6880438 ID=MsG0180000490.01;Name=MsG0180000490.01
Chr1 mRNA 6880438 6883180 6880438 ID=MsG0180000490.01.T01;Parent=MsG0180000490.01;Name=MsG0180000490.01.T01;_AED=0.42;_eAED=0.54;_QI=0|0.33|0.28|1|0.16|0.28|7|0|324
Chr1 exon 6882810 6883180 6882810 ID=MsG0180000490.01.T01:exon:2364;Parent=MsG0180000490.01.T01
Chr1 exon 6882487 6882690 6882487 ID=MsG0180000490.01.T01:exon:2365;Parent=MsG0180000490.01.T01
Chr1 exon 6882182 6882239 6882182 ID=MsG0180000490.01.T01:exon:2366;Parent=MsG0180000490.01.T01
Chr1 exon 6882030 6882099 6882030 ID=MsG0180000490.01.T01:exon:2367;Parent=MsG0180000490.01.T01
Chr1 exon 6881867 6881949 6881867 ID=MsG0180000490.01.T01:exon:2368;Parent=MsG0180000490.01.T01
Chr1 exon 6881657 6881759 6881657 ID=MsG0180000490.01.T01:exon:2369;Parent=MsG0180000490.01.T01
Chr1 exon 6880438 6880523 6880438 ID=MsG0180000490.01.T01:exon:2370;Parent=MsG0180000490.01.T01
Chr1 CDS 6882810 6883180 6882810 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Chr1 CDS 6882487 6882690 6882487 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Chr1 CDS 6882182 6882239 6882182 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Chr1 CDS 6882030 6882099 6882030 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Chr1 CDS 6881867 6881949 6881867 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Chr1 CDS 6881657 6881759 6881657 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Chr1 CDS 6880438 6880523 6880438 ID=MsG0180000490.01.T01:cds;Parent=MsG0180000490.01.T01
Gene Sequence

>MsG0180000490.01.T01

AACAAAATTATAACACTCTGCACTTTGCAACACTTTCCAGAACACTTCACAATGGAAATGGCAACCTCAAATTTCAAATTCACTCTCCCTTTGAAGAATACTAGGTACTTGTCTATGTTTCATGGGTTGAAACATCAACACTCAAATTCATTCAACAAATGTTTCAAACTTCAATCTTTGTCTACTAGAATAGTGTCAGCTACTACAAACATAGCTTCTGATATGTATGTTGGAAGAAACAATAGTAGCAAGATTTACACAAACTTGAATTCTTGTCTTGTGATTCCACCACCTACTTCCACCAAACCAAGAGCTATAATCAAATTCATTGGTGGTGCTTTCGTTGGTGCTATTCCTCAACTTACTTATGGATATCTTATAGAGTTATTGGCAAAGGAAGGTTTTGTTGTTGTGGTGGTGCCTTATAATGTGACATTTGATCATTCTCTAGCTGCTAAACAAGTTTATGACAAGTTTCATTCTTGTTTGGATACACTGCTCACATCTGGGTTGCCTCAATCCAATTTGTCACCTGCTCAGCTTGGAGGTCTTCCTATTTTCTCTGTTGGTCATAGCAATGGTGCACTTCTTCAAGTACTCACAGGAAGCTTATTTTCTGAGAAACTACCTAAGATTATAAAACTTTATAATCTGGATAGTGCAGATTATAAAGTGTTCGAATGTTTTAATTTATGGAAGCATAGTATGTATCTCTTATGGAAGGCTAATGCTGTAATCGCTTACAACAACAGACCAGCAACAGAGGCGGTTCCTTACTTTGAGCAGGATTTTTCCAGTAGACTCTATATGCCTTGCCAGTCGCCGCATAAAGTTTTGTTATGGAAGTTAAAATTTAGTTTGAAGGATGGACTTGCTATGTTACCTAAAACTAGGTCCTGCTGTCAGCCAGATGATGCAATAGTGGAAGCAAATCCAATTTACTCGATAGCTAGAAATGCACCAGGTATCACCTGA

Protein sequence

>MsG0180000490.01.T01

NKIITLCTLQHFPEHFTMEMATSNFKFTLPLKNTRYLSMFHGLKHQHSNSFNKCFKLQSLSTRIVSATTNIASDMYVGRNNSSKIYTNLNSCLVIPPPTSTKPRAIIKFIGGAFVGAIPQLTYGYLIELLAKEGFVVVVVPYNVTFDHSLAAKQVYDKFHSCLDTLLTSGLPQSNLSPAQLGGLPIFSVGHSNGALLQVLTGSLFSEKLPKIIKLYNLDSADYKVFECFNLWKHSMYLLWKANAVIAYNNRPATEAVPYFEQDFSSRLYMPCQSPHKVLLWKLKFSLKDGLAMLPKTRSCCQPDDAIVEANPIYSIARNAPGIT*