AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027082.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027082.01.T01 MTR_0194s0050 98.966 387 4 0 12 398 1 387 0.0 793
MsG0580027082.01.T01 MTR_3g099620 46.222 225 98 5 176 389 97 309 2.45e-54 182
MsG0580027082.01.T01 MTR_1g082480 47.368 209 99 4 188 392 129 330 1.28e-53 181
MsG0580027082.01.T01 MTR_7g113830 45.133 226 109 6 177 398 98 312 7.33e-52 176
MsG0580027082.01.T01 MTR_8g066770 41.241 274 122 7 150 398 50 309 1.16e-51 175
MsG0580027082.01.T01 MTR_8g024210 53.555 211 79 4 184 393 170 362 1.91e-51 176
MsG0580027082.01.T01 MTR_1g082480 46.970 198 95 3 188 382 129 319 1.74e-49 170
MsG0580027082.01.T01 MTR_3g090850 38.434 281 128 7 152 387 46 326 1.79e-48 167
MsG0580027082.01.T01 MTR_2g022280 45.408 196 97 2 195 390 1 186 7.02e-48 162
MsG0580027082.01.T01 MTR_5g064950 43.981 216 112 6 176 388 79 288 1.41e-46 162
MsG0580027082.01.T01 MTR_1g028470 38.053 226 129 1 173 387 65 290 1.43e-46 161
MsG0580027082.01.T01 MTR_5g064950 45.685 197 99 5 176 370 79 269 6.65e-44 155
MsG0580027082.01.T01 MTR_8g067280 27.511 229 135 9 170 394 439 640 8.52e-16 79.7
MsG0580027082.01.T01 MTR_5g030430 26.267 217 131 6 170 380 470 663 7.64e-14 73.6
MsG0580027082.01.T01 MTR_4g094762 25.500 200 132 4 197 394 293 477 7.79e-13 70.1
MsG0580027082.01.T01 MTR_1g072320 29.032 155 95 5 197 351 471 610 2.34e-12 68.9
MsG0580027082.01.T01 MTR_3g498695 28.063 253 136 11 118 367 239 448 9.24e-12 67.0
MsG0580027082.01.T01 MTR_3g498695 28.063 253 136 11 118 367 239 448 9.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027082.01.T01 AT3G24140 60.149 404 102 12 42 398 11 402 2.80e-140 406
MsG0580027082.01.T01 AT3G24140 59.901 404 103 12 42 398 11 402 1.39e-139 404
MsG0580027082.01.T01 AT3G06120 43.564 202 101 3 195 392 1 193 3.72e-48 163
MsG0580027082.01.T01 AT1G72210 43.056 216 110 3 185 398 115 319 7.05e-48 166
MsG0580027082.01.T01 AT1G22490 43.458 214 107 4 184 396 104 304 1.55e-47 164
MsG0580027082.01.T01 AT1G22490 45.989 187 88 3 184 370 104 277 2.18e-44 157
MsG0580027082.01.T01 AT1G72210 43.684 190 89 3 185 370 115 290 3.87e-43 153
MsG0580027082.01.T01 AT2G46810 41.176 204 98 3 188 389 114 297 1.17e-40 146
MsG0580027082.01.T01 AT2G46810 42.157 204 96 4 188 389 174 357 8.05e-40 145
MsG0580027082.01.T01 AT4G01460 40.284 211 115 4 185 394 105 305 9.98e-40 144
MsG0580027082.01.T01 AT4G01460 40.284 211 115 4 185 394 105 305 9.98e-40 144
MsG0580027082.01.T01 AT2G46810 42.157 204 96 4 188 389 186 369 1.23e-39 145
MsG0580027082.01.T01 AT2G46810 43.548 186 84 2 188 372 114 279 1.71e-38 141
MsG0580027082.01.T01 AT5G46690 41.964 224 114 4 184 392 77 299 2.28e-38 140
MsG0580027082.01.T01 AT3G61950 40.580 207 100 4 185 389 117 302 8.20e-38 139
MsG0580027082.01.T01 AT3G61950 42.487 193 89 3 185 376 117 288 1.19e-37 138
MsG0580027082.01.T01 AT3G61950 39.614 207 102 4 185 389 168 353 2.50e-37 139
MsG0580027082.01.T01 AT3G61950 41.451 193 91 3 185 376 168 339 4.90e-37 138
MsG0580027082.01.T01 AT5G46690 43.284 201 99 3 184 370 77 276 3.41e-35 131
MsG0580027082.01.T01 AT5G65320 36.449 214 119 4 185 393 92 293 1.41e-30 119
MsG0580027082.01.T01 AT5G65320 38.624 189 101 3 185 370 92 268 2.46e-27 110
MsG0580027082.01.T01 AT5G53210 65.714 70 24 0 193 262 100 169 3.04e-25 105
MsG0580027082.01.T01 AT5G53210 50.000 74 37 0 300 373 274 347 3.84e-15 76.6
MsG0580027082.01.T01 AT5G53210 65.714 70 24 0 193 262 100 169 4.27e-25 105
MsG0580027082.01.T01 AT5G53210 46.591 88 47 0 300 387 274 361 1.93e-18 86.7
MsG0580027082.01.T01 AT4G17880 27.354 223 126 7 153 372 380 569 1.66e-14 75.5
MsG0580027082.01.T01 AT1G32640 24.898 245 130 6 137 371 405 605 2.29e-14 75.1
MsG0580027082.01.T01 AT4G37850 26.768 198 116 4 197 390 153 325 9.72e-13 68.9
MsG0580027082.01.T01 AT4G37850 26.768 198 116 4 197 390 153 325 9.72e-13 68.9
MsG0580027082.01.T01 AT3G61950 66.667 42 14 0 185 226 168 209 1.43e-12 67.0
MsG0580027082.01.T01 AT3G61950 66.667 42 14 0 185 226 168 209 1.43e-12 67.0
MsG0580027082.01.T01 AT5G46760 24.898 245 150 7 132 372 358 572 1.32e-11 66.6

Find 108 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGATTCTTCGCGGTTTA+AGG 0.091676 5:+52873769 None:intergenic
TATTATATAACTTTGTATTT+AGG 0.176226 5:-52874864 MsG0580027082.01.T01:intron
GTGATGCAGTTTGCAGATTT+TGG 0.187925 5:-52873803 MsG0580027082.01.T01:CDS
GGTGATCAAGCTTCTATAAT+TGG 0.199677 5:-52872896 MsG0580027082.01.T01:CDS
TCACTTGTCTTAACAGTTCT+TGG 0.201116 5:+52873503 None:intergenic
CTGTTTGGAGTAAGAGAAAT+TGG 0.281448 5:+52874893 None:intergenic
CACCACTCAACATCAAATTT+TGG 0.284583 5:+52873690 None:intergenic
CCTCCTGAAGTTTGTGTTTG+AGG 0.289960 5:+52873869 None:intergenic
TCGCGGTTTAAGGCTAATTT+AGG 0.318430 5:+52873779 None:intergenic
TAAAGTCATCTTCTAAATAA+TGG 0.320084 5:-52874214 MsG0580027082.01.T01:exon
GTAGAAAGAGGCTTCTAGTT+TGG 0.325251 5:+52872001 None:intergenic
CCTATAGTACTCTTGTCATT+TGG 0.326217 5:-52872028 MsG0580027082.01.T01:three_prime_UTR
GTGATCAAGCTTCTATAATT+GGG 0.350819 5:-52872895 MsG0580027082.01.T01:CDS
GTTCATATTGTTGTTGTTGT+TGG 0.352563 5:+52873960 None:intergenic
ACTAGCTTCATCTGGTCATT+TGG 0.371823 5:+52872716 None:intergenic
CCAAATGACAAGAGTACTAT+AGG 0.373583 5:+52872028 None:intergenic
CACAATTCATTTGTAGAAAG+AGG 0.374807 5:+52871989 None:intergenic
CAATTTCTCTTACTCCAAAC+AGG 0.379984 5:-52874892 MsG0580027082.01.T01:five_prime_UTR
AAGCTAGTTGAGATGGAAAC+TGG 0.382861 5:-52872701 MsG0580027082.01.T01:CDS
TATAGAATTTGTGAGGGAAT+TGG 0.383630 5:-52872867 MsG0580027082.01.T01:CDS
AGCTAGTGATACAAGGTTTA+CGG 0.387881 5:-52872169 MsG0580027082.01.T01:CDS
AGGAAACTTGAGAAAATAAA+CGG 0.392733 5:+52873736 None:intergenic
AACCAGGCATGAGGGATCTA+AGG 0.393915 5:+52873402 None:intergenic
TTCTGATGGTCTACTGTAGT+GGG 0.401364 5:-52874992 MsG0580027082.01.T01:five_prime_UTR
GATGTAGAAGTGAAACTTCT+AGG 0.406812 5:-52872638 MsG0580027082.01.T01:CDS
GCCTTAAACCGCGAAGAATC+AGG 0.418841 5:-52873770 MsG0580027082.01.T01:CDS
CCATCTCAACTAGCTTCATC+TGG 0.419409 5:+52872708 None:intergenic
TTTCCATCGTCTTCTTCTGA+TGG 0.423943 5:-52875006 MsG0580027082.01.T01:five_prime_UTR
AAGCACAATCAAAACAAGTT+GGG 0.436877 5:-52872793 MsG0580027082.01.T01:CDS
CCCACCAATATGTTTCTTGA+GGG 0.438462 5:+52874284 None:intergenic
GGAGAAAGATAACGACTATT+CGG 0.442650 5:-52874193 MsG0580027082.01.T01:intron
TATATAATAAGAAACCTGTT+TGG 0.443208 5:+52874878 None:intergenic
GACTGAAAATTCATTGAATG+AGG 0.445925 5:+52871932 None:intergenic
TGCAGAGAGTAAGTCATGTT+TGG 0.450615 5:-52872663 MsG0580027082.01.T01:CDS
TCTATCTTATTGTTTAAGAC+AGG 0.457469 5:+52873716 None:intergenic
TTGAGTGGTGGTGATGGGTT+AGG 0.458608 5:-52873677 MsG0580027082.01.T01:CDS
GGAAACTTGAGAAAATAAAC+GGG 0.463016 5:+52873737 None:intergenic
TATCGAGTTGGCGAAACATC+GGG 0.463450 5:-52873926 MsG0580027082.01.T01:CDS
GTCCTTAGATCCCTCATGCC+TGG 0.466194 5:-52873404 MsG0580027082.01.T01:CDS
CAAAAGAGAAGGAGACTACT+AGG 0.474641 5:-52872818 MsG0580027082.01.T01:CDS
CTTCTGATGGTCTACTGTAG+TGG 0.475879 5:-52874993 MsG0580027082.01.T01:five_prime_UTR
GAAGCACAATCAAAACAAGT+TGG 0.486078 5:-52872794 MsG0580027082.01.T01:CDS
ATTCTCTCAAGGAGAAGGCC+TGG 0.493901 5:-52872596 MsG0580027082.01.T01:CDS
TGGTCATTTGGTAAAGGAGC+TGG 0.494479 5:+52872728 None:intergenic
CCCTCAAGAAACATATTGGT+GGG 0.494662 5:-52874284 MsG0580027082.01.T01:five_prime_UTR
AGTTTCTGATGAGAACAATT+CGG 0.497954 5:-52873579 MsG0580027082.01.T01:CDS
AAGAACTGTCTGTTCAATAG+TGG 0.499927 5:+52872508 None:intergenic
TTGATGTTGAGTGGTGGTGA+TGG 0.503048 5:-52873683 MsG0580027082.01.T01:CDS
CCAGATGAAGCTAGTTGAGA+TGG 0.511789 5:-52872708 MsG0580027082.01.T01:CDS
GCCTGGTTCATACGTGCAAA+GGG 0.513019 5:-52873387 MsG0580027082.01.T01:intron
TTCATCTGGTCATTTGGTAA+AGG 0.516461 5:+52872722 None:intergenic
AGGGCCCTCAAGAAACATAT+TGG 0.516644 5:-52874288 MsG0580027082.01.T01:five_prime_UTR
CCCCACCAATATGTTTCTTG+AGG 0.518040 5:+52874283 None:intergenic
GTATCGAGTTGGCGAAACAT+CGG 0.525109 5:-52873927 MsG0580027082.01.T01:CDS
TGATGTTGAGTGGTGGTGAT+GGG 0.525956 5:-52873682 MsG0580027082.01.T01:CDS
GAATGAGGTTTATTTAAGAG+AGG 0.528890 5:+52871947 None:intergenic
TGCAAGAGAACAACAAGAAG+AGG 0.529798 5:-52873532 MsG0580027082.01.T01:CDS
ATGGTCTTGATCAACTGTCC+AGG 0.530534 5:+52872578 None:intergenic
TGCCTGGTTCATACGTGCAA+AGG 0.533937 5:-52873388 MsG0580027082.01.T01:CDS
TTTGTAGAAGAGAATCATGC+AGG 0.533983 5:+52874960 None:intergenic
TTAAAATTCTCTCAAGGAGA+AGG 0.534852 5:-52872601 MsG0580027082.01.T01:CDS
CATATCTTCAAGAGCAGCAA+TGG 0.547350 5:+52872559 None:intergenic
TCTTTATTCATTCAATGTCA+AGG 0.550164 5:-52872489 MsG0580027082.01.T01:intron
ACCCTTTGCACGTATGAACC+AGG 0.556000 5:+52873386 None:intergenic
TTGAAACTTGGTGGCATAGG+TGG 0.561613 5:+52874016 None:intergenic
GCCCTCAAGAAACATATTGG+TGG 0.564311 5:-52874285 MsG0580027082.01.T01:five_prime_UTR
TAATCAAGTGTGTTGAAACT+TGG 0.565232 5:+52874004 None:intergenic
CTTCGATACCTGATTCTTCG+CGG 0.569325 5:+52873762 None:intergenic
TGAATTGTGTAATCTATCAA+AGG 0.569575 5:-52871975 MsG0580027082.01.T01:three_prime_UTR
GTCTAGAATCACAAAAGAGA+AGG 0.576264 5:-52872829 MsG0580027082.01.T01:CDS
ATGCCTCAAACACAAACTTC+AGG 0.576898 5:-52873872 MsG0580027082.01.T01:CDS
GTGTTGAAACTTGGTGGCAT+AGG 0.578228 5:+52874013 None:intergenic
GTTGGTGATGATGATGATCA+AGG 0.583272 5:+52873978 None:intergenic
GGGGAGCTATAGAATTTGTG+AGG 0.588962 5:-52872874 MsG0580027082.01.T01:CDS
TGACTCACATAGCTGTTGAA+AGG 0.591781 5:-52873460 MsG0580027082.01.T01:CDS
TCAAGTGTGTTGAAACTTGG+TGG 0.591888 5:+52874007 None:intergenic
TGATCAAGCTTCTATAATTG+GGG 0.592592 5:-52872894 MsG0580027082.01.T01:CDS
AGCACAATCAAAACAAGTTG+GGG 0.596948 5:-52872792 MsG0580027082.01.T01:CDS
TGAAAACAACAACGGAATGG+TGG 0.599929 5:-52873903 MsG0580027082.01.T01:CDS
TCCAGGTAGCTAGTGATACA+AGG 0.601551 5:-52872176 MsG0580027082.01.T01:intron
GCACGTATGAACCAGGCATG+AGG 0.603673 5:+52873393 None:intergenic
CAATGATTAAAATTCTCTCA+AGG 0.606240 5:-52872607 MsG0580027082.01.T01:CDS
GAGGTTCAAATTAACAAGCG+TGG 0.607996 5:-52873642 MsG0580027082.01.T01:CDS
CACGTATGAACCAGGCATGA+GGG 0.608646 5:+52873394 None:intergenic
AAGGTGAAAGAAAGTCAGAT+GGG 0.612227 5:+52874925 None:intergenic
GACCAAAATTTGATGTTGAG+TGG 0.615025 5:-52873692 MsG0580027082.01.T01:CDS
TTAACAAAACTTCAGGTGGA+GGG 0.617194 5:-52874307 MsG0580027082.01.T01:intron
GAGAAATTGGAAGCAGACAA+AGG 0.618216 5:+52874906 None:intergenic
AAAGGTGAAAGAAAGTCAGA+TGG 0.619958 5:+52874924 None:intergenic
TAGCTGTTGAAAGGAATCGA+AGG 0.623409 5:-52873451 MsG0580027082.01.T01:CDS
GGGTGAAAACAACAACGGAA+TGG 0.626152 5:-52873906 MsG0580027082.01.T01:CDS
AAAACTTAGTATCTGCTGAA+CGG 0.628856 5:+52872128 None:intergenic
CCTCAAGAAACATATTGGTG+GGG 0.630413 5:-52874283 MsG0580027082.01.T01:five_prime_UTR
CCTCAAACACAAACTTCAGG+AGG 0.637280 5:-52873869 MsG0580027082.01.T01:CDS
TCTGATGGTCTACTGTAGTG+GGG 0.638325 5:-52874991 MsG0580027082.01.T01:five_prime_UTR
TTGGTGATGATGATGATCAA+GGG 0.644829 5:+52873979 None:intergenic
TAGTGGTGATGTTTGTGTGA+AGG 0.650341 5:+52872525 None:intergenic
TTGTAGAAGAGAATCATGCA+GGG 0.652898 5:+52874961 None:intergenic
GGGAGCTATAGAATTTGTGA+GGG 0.652926 5:-52872873 MsG0580027082.01.T01:CDS
TCGGTGCAAGAGAAGAATTG+TGG 0.653374 5:-52873560 MsG0580027082.01.T01:CDS
CAAAATTTGATGTTGAGTGG+TGG 0.660663 5:-52873689 MsG0580027082.01.T01:CDS
AGACCATCAGAAGAAGACGA+TGG 0.681000 5:+52875003 None:intergenic
GATCAAGCTTCTATAATTGG+GGG 0.684770 5:-52872893 MsG0580027082.01.T01:CDS
GTTCAAATTAACAAGCGTGG+AGG 0.690801 5:-52873639 MsG0580027082.01.T01:CDS
AGGTGAAAGAAAGTCAGATG+GGG 0.697785 5:+52874926 None:intergenic
GGTTAGGAGAAAATGACGAG+AGG 0.716694 5:-52873661 MsG0580027082.01.T01:CDS
ACATCGGGTGAAAACAACAA+CGG 0.729217 5:-52873911 MsG0580027082.01.T01:CDS
GAAACTTGAGAAAATAAACG+GGG 0.795358 5:+52873738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATAAACTAAAATC+TGG - Chr5:52874714-52874733 MsG0580027082.01.T01:intron 10.0%
!! TAAAAAATAAACTAAAATCT+GGG - Chr5:52874715-52874734 MsG0580027082.01.T01:intron 10.0%
!! TATTATATAACTTTGTATTT+AGG - Chr5:52872089-52872108 MsG0580027082.01.T01:exon 10.0%
!!! GAAGTAATTTATTTAATTTT+AGG + Chr5:52874667-52874686 None:intergenic 10.0%
!! AAAAAATAAACTAAAATCTG+GGG - Chr5:52874716-52874735 MsG0580027082.01.T01:intron 15.0%
!! ATATATACAAAATATTTGAG+TGG + Chr5:52872840-52872859 None:intergenic 15.0%
!! CAAATAGAAAAAGTAAAATT+AGG - Chr5:52872218-52872237 MsG0580027082.01.T01:intron 15.0%
!!! ATTTTCTAATTTAGTTGAAA+TGG - Chr5:52872501-52872520 MsG0580027082.01.T01:CDS 15.0%
!!! GTAACAATAATTTAAAACTT+TGG + Chr5:52873897-52873916 None:intergenic 15.0%
!!! GTTTTTGATTTTACAATATA+GGG - Chr5:52874036-52874055 MsG0580027082.01.T01:intron 15.0%
!!! TAAATTTTAGAGAACAATTA+CGG + Chr5:52873919-52873938 None:intergenic 15.0%
!!! TATTTTATATATATGTTGTG+TGG - Chr5:52874896-52874915 MsG0580027082.01.T01:five_prime_UTR 15.0%
!!! TGTTTTTGATTTTACAATAT+AGG - Chr5:52874035-52874054 MsG0580027082.01.T01:intron 15.0%
!!! TTACTATAAAACTTTTTTTG+TGG - Chr5:52872559-52872578 MsG0580027082.01.T01:CDS 15.0%
!!! TTTTGTTTTTTAGTAGTTAT+TGG - Chr5:52872354-52872373 MsG0580027082.01.T01:intron 15.0%
!! AAATTTAGTGAGAGAAATTT+AGG + Chr5:52872337-52872356 None:intergenic 20.0%
!! AATTTAGTGAGAGAAATTTA+GGG + Chr5:52872336-52872355 None:intergenic 20.0%
!! AGAAAAAGTAAAATTAGGAA+GGG - Chr5:52872223-52872242 MsG0580027082.01.T01:intron 20.0%
!! GTAATTTACTAGATTAAAGT+TGG + Chr5:52872384-52872403 None:intergenic 20.0%
!! TAAAGTCATCTTCTAAATAA+TGG - Chr5:52872739-52872758 MsG0580027082.01.T01:CDS 20.0%
!! TAACAATATGCAAATAACTA+TGG - Chr5:52872471-52872490 MsG0580027082.01.T01:intron 20.0%
!! TAGAAAAAGTAAAATTAGGA+AGG - Chr5:52872222-52872241 MsG0580027082.01.T01:intron 20.0%
!! TATATAATAAGAAACCTGTT+TGG + Chr5:52872078-52872097 None:intergenic 20.0%
!!! GATTAAATTTAAGACTTAAG+TGG + Chr5:52874692-52874711 None:intergenic 20.0%
! AAAATCTCTCACAAATTCTT+TGG - Chr5:52872265-52872284 MsG0580027082.01.T01:intron 25.0%
! AAAATTTGAGCAAAACAACA+TGG + Chr5:52872902-52872921 None:intergenic 25.0%
! AGGAAACTTGAGAAAATAAA+CGG + Chr5:52873220-52873239 None:intergenic 25.0%
! ATTATCTCATAAGATGTGAA+TGG + Chr5:52874555-52874574 None:intergenic 25.0%
! ATTGCACCAAAATTAAACAA+TGG - Chr5:52873957-52873976 MsG0580027082.01.T01:CDS 25.0%
! CAATGATTAAAATTCTCTCA+AGG - Chr5:52874346-52874365 MsG0580027082.01.T01:intron 25.0%
! GAAAAAATGTATGTTATAGC+TGG - Chr5:52873617-52873636 MsG0580027082.01.T01:CDS 25.0%
! TCTTTATTCATTCAATGTCA+AGG - Chr5:52874464-52874483 MsG0580027082.01.T01:intron 25.0%
! TGAATTGTGTAATCTATCAA+AGG - Chr5:52874978-52874997 MsG0580027082.01.T01:five_prime_UTR 25.0%
!! AATGGATTTAACAAAACTTC+AGG - Chr5:52872639-52872658 MsG0580027082.01.T01:CDS 25.0%
!! TCTATCTTATTGTTTAAGAC+AGG + Chr5:52873240-52873259 None:intergenic 25.0%
!! TTTTGTGTTCTTTTGTTCAA+TGG - Chr5:52872621-52872640 MsG0580027082.01.T01:CDS 25.0%
!!! AAATGAGTGTTTTTATCGAA+AGG + Chr5:52871930-52871949 None:intergenic 25.0%
!!! AATGAGTGTTTTTATCGAAA+GGG + Chr5:52871929-52871948 None:intergenic 25.0%
!!! CTCTAACCATTGTTTAATTT+TGG + Chr5:52873966-52873985 None:intergenic 25.0%
AAAACTTAGTATCTGCTGAA+CGG + Chr5:52874828-52874847 None:intergenic 30.0%
AAACAACATGGTGATATATG+AGG + Chr5:52872890-52872909 None:intergenic 30.0%
AAATGTGTCCTTGATTTCTA+AGG + Chr5:52873855-52873874 None:intergenic 30.0%
AAGCACAATCAAAACAAGTT+GGG - Chr5:52874160-52874179 MsG0580027082.01.T01:intron 30.0%
ACAAAGACATAAAAAAGCCA+CGG + Chr5:52872815-52872834 None:intergenic 30.0%
AGTTTCTGATGAGAACAATT+CGG - Chr5:52873374-52873393 MsG0580027082.01.T01:intron 30.0%
ATGTTATAGCTGGTGAAATT+TGG - Chr5:52873627-52873646 MsG0580027082.01.T01:CDS 30.0%
CACAATTCATTTGTAGAAAG+AGG + Chr5:52874967-52874986 None:intergenic 30.0%
CTGATACCATGTTGAAATTT+GGG + Chr5:52873700-52873719 None:intergenic 30.0%
GAAACTTGAGAAAATAAACG+GGG + Chr5:52873218-52873237 None:intergenic 30.0%
GAATGAGGTTTATTTAAGAG+AGG + Chr5:52875009-52875028 None:intergenic 30.0%
GACTGAAAATTCATTGAATG+AGG + Chr5:52875024-52875043 None:intergenic 30.0%
GGAAACTTGAGAAAATAAAC+GGG + Chr5:52873219-52873238 None:intergenic 30.0%
GTGATCAAGCTTCTATAATT+GGG - Chr5:52874058-52874077 MsG0580027082.01.T01:intron 30.0%
TAATCAAGTGTGTTGAAACT+TGG + Chr5:52872952-52872971 None:intergenic 30.0%
TATAGAATTTGTGAGGGAAT+TGG - Chr5:52874086-52874105 MsG0580027082.01.T01:intron 30.0%
TCTGATACCATGTTGAAATT+TGG + Chr5:52873701-52873720 None:intergenic 30.0%
TGATACCATGTTGAAATTTG+GGG + Chr5:52873699-52873718 None:intergenic 30.0%
TGATCAAGCTTCTATAATTG+GGG - Chr5:52874059-52874078 MsG0580027082.01.T01:intron 30.0%
TGTTATAGCTGGTGAAATTT+GGG - Chr5:52873628-52873647 MsG0580027082.01.T01:CDS 30.0%
TTAAAATTCTCTCAAGGAGA+AGG - Chr5:52874352-52874371 MsG0580027082.01.T01:intron 30.0%
TTAACTCATTCTCACAAAAC+CGG - Chr5:52873653-52873672 MsG0580027082.01.T01:CDS 30.0%
TTATGTACATCACATAGCTA+GGG - Chr5:52872118-52872137 MsG0580027082.01.T01:CDS 30.0%
TTTATGTACATCACATAGCT+AGG - Chr5:52872117-52872136 MsG0580027082.01.T01:CDS 30.0%
! GTTCATATTGTTGTTGTTGT+TGG + Chr5:52872996-52873015 None:intergenic 30.0%
AAAGGTGAAAGAAAGTCAGA+TGG + Chr5:52872032-52872051 None:intergenic 35.0%
AAGAACTGTCTGTTCAATAG+TGG + Chr5:52874448-52874467 None:intergenic 35.0%
AAGGTGAAAGAAAGTCAGAT+GGG + Chr5:52872031-52872050 None:intergenic 35.0%
AGCACAATCAAAACAAGTTG+GGG - Chr5:52874161-52874180 MsG0580027082.01.T01:intron 35.0%
AGCTAGTGATACAAGGTTTA+CGG - Chr5:52874784-52874803 MsG0580027082.01.T01:intron 35.0%
ATTAGGAAGGGAATTAGTGA+CGG - Chr5:52872235-52872254 MsG0580027082.01.T01:intron 35.0%
CAAAATTTGATGTTGAGTGG+TGG - Chr5:52873264-52873283 MsG0580027082.01.T01:intron 35.0%
CAATTTCTCTTACTCCAAAC+AGG - Chr5:52872061-52872080 MsG0580027082.01.T01:three_prime_UTR 35.0%
CCTATAGTACTCTTGTCATT+TGG - Chr5:52874925-52874944 MsG0580027082.01.T01:five_prime_UTR 35.0%
GAAGCACAATCAAAACAAGT+TGG - Chr5:52874159-52874178 MsG0580027082.01.T01:intron 35.0%
GACCAAAATTTGATGTTGAG+TGG - Chr5:52873261-52873280 MsG0580027082.01.T01:intron 35.0%
GATCAAGCTTCTATAATTGG+GGG - Chr5:52874060-52874079 MsG0580027082.01.T01:intron 35.0%
GATGTAGAAGTGAAACTTCT+AGG - Chr5:52874315-52874334 MsG0580027082.01.T01:intron 35.0%
GGAGAAAGATAACGACTATT+CGG - Chr5:52872760-52872779 MsG0580027082.01.T01:CDS 35.0%
GGATTTAACAAAACTTCAGG+TGG - Chr5:52872642-52872661 MsG0580027082.01.T01:CDS 35.0%
GGTGATCAAGCTTCTATAAT+TGG - Chr5:52874057-52874076 MsG0580027082.01.T01:intron 35.0%
GTTATAGCTGGTGAAATTTG+GGG - Chr5:52873629-52873648 MsG0580027082.01.T01:CDS 35.0%
TCACTTGTCTTAACAGTTCT+TGG + Chr5:52873453-52873472 None:intergenic 35.0%
TTAACAAAACTTCAGGTGGA+GGG - Chr5:52872646-52872665 MsG0580027082.01.T01:CDS 35.0%
TTAGACCCCAAATTTCAACA+TGG - Chr5:52873691-52873710 MsG0580027082.01.T01:CDS 35.0%
TTCATCTGGTCATTTGGTAA+AGG + Chr5:52874234-52874253 None:intergenic 35.0%
TTGTAGAAGAGAATCATGCA+GGG + Chr5:52871995-52872014 None:intergenic 35.0%
TTTAACAAAACTTCAGGTGG+AGG - Chr5:52872645-52872664 MsG0580027082.01.T01:CDS 35.0%
TTTGTAGAAGAGAATCATGC+AGG + Chr5:52871996-52872015 None:intergenic 35.0%
! ATTTTGTCTTGCATGAAGTG+AGG - Chr5:52872694-52872713 MsG0580027082.01.T01:CDS 35.0%
! CAAACTTCAGGAGGTTTTTA+TGG - Chr5:52873093-52873112 MsG0580027082.01.T01:intron 35.0%
! CACCACTCAACATCAAATTT+TGG + Chr5:52873266-52873285 None:intergenic 35.0%
! CTGTTTGGAGTAAGAGAAAT+TGG + Chr5:52872063-52872082 None:intergenic 35.0%
! GTCTAGAATCACAAAAGAGA+AGG - Chr5:52874124-52874143 MsG0580027082.01.T01:intron 35.0%
! TCCTCAAACACATGTTGTTT+GGG - Chr5:52873782-52873801 MsG0580027082.01.T01:CDS 35.0%
!! CATGAAGTGAGGTTGTTTTA+GGG - Chr5:52872705-52872724 MsG0580027082.01.T01:CDS 35.0%
!! CCAAATGACAAGAGTACTAT+AGG + Chr5:52874928-52874947 None:intergenic 35.0%
!! TTGGTGATGATGATGATCAA+GGG + Chr5:52872977-52872996 None:intergenic 35.0%
!!! GTATTTTTTGTGATGTGTCC+AGG - Chr5:52874760-52874779 MsG0580027082.01.T01:intron 35.0%
AAAGGAGCTGGAAAAAATGG+AGG + Chr5:52874216-52874235 None:intergenic 40.0%
AAGCTAGTTGAGATGGAAAC+TGG - Chr5:52874252-52874271 MsG0580027082.01.T01:five_prime_UTR 40.0%
ACATCGGGTGAAAACAACAA+CGG - Chr5:52873042-52873061 MsG0580027082.01.T01:intron 40.0%
AGGTGAAAGAAAGTCAGATG+GGG + Chr5:52872030-52872049 None:intergenic 40.0%
ATGCCTCAAACACAAACTTC+AGG - Chr5:52873081-52873100 MsG0580027082.01.T01:intron 40.0%
CAAAAGAGAAGGAGACTACT+AGG - Chr5:52874135-52874154 MsG0580027082.01.T01:intron 40.0%
CATATCTTCAAGAGCAGCAA+TGG + Chr5:52874397-52874416 None:intergenic 40.0%
CCCACCAATATGTTTCTTGA+GGG + Chr5:52872672-52872691 None:intergenic 40.0%
CCCTCAAGAAACATATTGGT+GGG - Chr5:52872669-52872688 MsG0580027082.01.T01:CDS 40.0%
CCTCAAGAAACATATTGGTG+GGG - Chr5:52872670-52872689 MsG0580027082.01.T01:CDS 40.0%
CGATCTAAACTGTGACATCA+AGG + Chr5:52872433-52872452 None:intergenic 40.0%
CTAACTCATCCTTACAAAGC+CGG + Chr5:52873675-52873694 None:intergenic 40.0%
GAGAAATTGGAAGCAGACAA+AGG + Chr5:52872050-52872069 None:intergenic 40.0%
GAGGTTCAAATTAACAAGCG+TGG - Chr5:52873311-52873330 MsG0580027082.01.T01:intron 40.0%
GGGAGCTATAGAATTTGTGA+GGG - Chr5:52874080-52874099 MsG0580027082.01.T01:intron 40.0%
GGTAAAGGAGCTGGAAAAAA+TGG + Chr5:52874219-52874238 None:intergenic 40.0%
GTCCTCAAACACATGTTGTT+TGG - Chr5:52873781-52873800 MsG0580027082.01.T01:CDS 40.0%
GTTCAAATTAACAAGCGTGG+AGG - Chr5:52873314-52873333 MsG0580027082.01.T01:intron 40.0%
TAGCTGTTGAAAGGAATCGA+AGG - Chr5:52873502-52873521 MsG0580027082.01.T01:CDS 40.0%
TCAAGTGTGTTGAAACTTGG+TGG + Chr5:52872949-52872968 None:intergenic 40.0%
TCCTGTCTCCTTAGAAATCA+AGG - Chr5:52873844-52873863 MsG0580027082.01.T01:CDS 40.0%
TGAAAACAACAACGGAATGG+TGG - Chr5:52873050-52873069 MsG0580027082.01.T01:intron 40.0%
TGACTCACATAGCTGTTGAA+AGG - Chr5:52873493-52873512 MsG0580027082.01.T01:CDS 40.0%
TGCAAGAGAACAACAAGAAG+AGG - Chr5:52873421-52873440 MsG0580027082.01.T01:CDS 40.0%
TGCAGAGAGTAAGTCATGTT+TGG - Chr5:52874290-52874309 MsG0580027082.01.T01:five_prime_UTR 40.0%
TTCTGATGGTCTACTGTAGT+GGG - Chr5:52871961-52871980 MsG0580027082.01.T01:three_prime_UTR 40.0%
TTTCCATCGTCTTCTTCTGA+TGG - Chr5:52871947-52871966 MsG0580027082.01.T01:three_prime_UTR 40.0%
! ACTAGCTTCATCTGGTCATT+TGG + Chr5:52874240-52874259 None:intergenic 40.0%
! CCTCAAACACATGTTGTTTG+GGG - Chr5:52873783-52873802 MsG0580027082.01.T01:CDS 40.0%
! CTCAAACACATGTTGTTTGG+GGG - Chr5:52873784-52873803 MsG0580027082.01.T01:CDS 40.0%
! CTCAAATTTTGAATCGCTGC+AGG - Chr5:52872912-52872931 MsG0580027082.01.T01:intron 40.0%
! GTAGAAAGAGGCTTCTAGTT+TGG + Chr5:52874955-52874974 None:intergenic 40.0%
! GTGATGCAGTTTGCAGATTT+TGG - Chr5:52873150-52873169 MsG0580027082.01.T01:intron 40.0%
! TAGTGGTGATGTTTGTGTGA+AGG + Chr5:52874431-52874450 None:intergenic 40.0%
! TCCTTGATTTCTAAGGAGAC+AGG + Chr5:52873848-52873867 None:intergenic 40.0%
! TCGCGGTTTAAGGCTAATTT+AGG + Chr5:52873177-52873196 None:intergenic 40.0%
!! GCATGAAGTGAGGTTGTTTT+AGG - Chr5:52872704-52872723 MsG0580027082.01.T01:CDS 40.0%
!! GTTGGTGATGATGATGATCA+AGG + Chr5:52872978-52872997 None:intergenic 40.0%
!!! CAGCTTTTGAAGTATCGAGT+TGG - Chr5:52873015-52873034 MsG0580027082.01.T01:intron 40.0%
ACCTGATTCTTCGCGGTTTA+AGG + Chr5:52873187-52873206 None:intergenic 45.0%
ACCTTGTATCACTAGCTACC+TGG + Chr5:52874781-52874800 None:intergenic 45.0%
AGACCATCAGAAGAAGACGA+TGG + Chr5:52871953-52871972 None:intergenic 45.0%
AGGGCCCTCAAGAAACATAT+TGG - Chr5:52872665-52872684 MsG0580027082.01.T01:CDS 45.0%
CCAGATGAAGCTAGTTGAGA+TGG - Chr5:52874245-52874264 MsG0580027082.01.T01:five_prime_UTR 45.0%
CCCCAAACAACATGTGTTTG+AGG + Chr5:52873786-52873805 None:intergenic 45.0%
CCCCACCAATATGTTTCTTG+AGG + Chr5:52872673-52872692 None:intergenic 45.0%
CCTCAAACACAAACTTCAGG+AGG - Chr5:52873084-52873103 MsG0580027082.01.T01:intron 45.0%
CCTCCTGAAGTTTGTGTTTG+AGG + Chr5:52873087-52873106 None:intergenic 45.0%
CTTCGATACCTGATTCTTCG+CGG + Chr5:52873194-52873213 None:intergenic 45.0%
CTTCTGATGGTCTACTGTAG+TGG - Chr5:52871960-52871979 MsG0580027082.01.T01:three_prime_UTR 45.0%
GCCCTCAAGAAACATATTGG+TGG - Chr5:52872668-52872687 MsG0580027082.01.T01:CDS 45.0%
GGGGAGCTATAGAATTTGTG+AGG - Chr5:52874079-52874098 MsG0580027082.01.T01:intron 45.0%
GGGTGAAAACAACAACGGAA+TGG - Chr5:52873047-52873066 MsG0580027082.01.T01:intron 45.0%
GGTTAGGAGAAAATGACGAG+AGG - Chr5:52873292-52873311 MsG0580027082.01.T01:intron 45.0%
TCCAGGTAGCTAGTGATACA+AGG - Chr5:52874777-52874796 MsG0580027082.01.T01:intron 45.0%
TCGGTGCAAGAGAAGAATTG+TGG - Chr5:52873393-52873412 MsG0580027082.01.T01:CDS 45.0%
TCTGATGGTCTACTGTAGTG+GGG - Chr5:52871962-52871981 MsG0580027082.01.T01:three_prime_UTR 45.0%
TGGTATCAGAGCGTGGTTAA+CGG - Chr5:52873711-52873730 MsG0580027082.01.T01:CDS 45.0%
TGGTCATTTGGTAAAGGAGC+TGG + Chr5:52874228-52874247 None:intergenic 45.0%
TTCAACATGGTATCAGAGCG+TGG - Chr5:52873704-52873723 MsG0580027082.01.T01:CDS 45.0%
! AAACACATGTTGTTTGGGGG+TGG - Chr5:52873787-52873806 MsG0580027082.01.T01:CDS 45.0%
! ATGGTCTTGATCAACTGTCC+AGG + Chr5:52874378-52874397 None:intergenic 45.0%
! CCATCTCAACTAGCTTCATC+TGG + Chr5:52874248-52874267 None:intergenic 45.0%
! CTCACAAAACCGGCTTTGTA+AGG - Chr5:52873663-52873682 MsG0580027082.01.T01:CDS 45.0%
! GTGTTGAAACTTGGTGGCAT+AGG + Chr5:52872943-52872962 None:intergenic 45.0%
! TGATGTTGAGTGGTGGTGAT+GGG - Chr5:52873271-52873290 MsG0580027082.01.T01:intron 45.0%
! TTGAAACTTGGTGGCATAGG+TGG + Chr5:52872940-52872959 None:intergenic 45.0%
! TTGATGTTGAGTGGTGGTGA+TGG - Chr5:52873270-52873289 MsG0580027082.01.T01:intron 45.0%
!! GTATCGAGTTGGCGAAACAT+CGG - Chr5:52873026-52873045 MsG0580027082.01.T01:intron 45.0%
!! TATCGAGTTGGCGAAACATC+GGG - Chr5:52873027-52873046 MsG0580027082.01.T01:intron 45.0%
AACCAGGCATGAGGGATCTA+AGG + Chr5:52873554-52873573 None:intergenic 50.0%
ACCCTTTGCACGTATGAACC+AGG + Chr5:52873570-52873589 None:intergenic 50.0%
AGGAGACAGGAACATACGTC+TGG + Chr5:52873835-52873854 None:intergenic 50.0%
ATCTCTCTTCTCTCTTGCCG+TGG - Chr5:52872795-52872814 MsG0580027082.01.T01:CDS 50.0%
ATTCTCTCAAGGAGAAGGCC+TGG - Chr5:52874357-52874376 MsG0580027082.01.T01:intron 50.0%
CACGTATGAACCAGGCATGA+GGG + Chr5:52873562-52873581 None:intergenic 50.0%
GCCTGGTTCATACGTGCAAA+GGG - Chr5:52873566-52873585 MsG0580027082.01.T01:CDS 50.0%
GCCTTAAACCGCGAAGAATC+AGG - Chr5:52873183-52873202 MsG0580027082.01.T01:intron 50.0%
TGCCTGGTTCATACGTGCAA+AGG - Chr5:52873565-52873584 MsG0580027082.01.T01:CDS 50.0%
!! TTGAGTGGTGGTGATGGGTT+AGG - Chr5:52873276-52873295 MsG0580027082.01.T01:intron 50.0%
GCACGTATGAACCAGGCATG+AGG + Chr5:52873563-52873582 None:intergenic 55.0%
GTCCTTAGATCCCTCATGCC+TGG - Chr5:52873549-52873568 MsG0580027082.01.T01:CDS 55.0%
GTTGTTTGGGGGTGGTCGCA+CGG - Chr5:52873795-52873814 MsG0580027082.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 52871922 52875053 52871922 ID=MsG0580027082.01;Name=MsG0580027082.01
Chr5 mRNA 52871922 52875053 52871922 ID=MsG0580027082.01.T01;Parent=MsG0580027082.01;Name=MsG0580027082.01.T01;_AED=0.38;_eAED=0.38;_QI=286|1|1|1|0.5|0.4|5|182|398
Chr5 exon 52871922 52872193 52871922 ID=MsG0580027082.01.T01:exon:29267;Parent=MsG0580027082.01.T01
Chr5 exon 52872490 52872918 52872490 ID=MsG0580027082.01.T01:exon:29266;Parent=MsG0580027082.01.T01
Chr5 exon 52873388 52874041 52873388 ID=MsG0580027082.01.T01:exon:29265;Parent=MsG0580027082.01.T01
Chr5 exon 52874194 52874314 52874194 ID=MsG0580027082.01.T01:exon:29264;Parent=MsG0580027082.01.T01
Chr5 exon 52874865 52875053 52874865 ID=MsG0580027082.01.T01:exon:29263;Parent=MsG0580027082.01.T01
Chr5 five_prime_UTR 52874865 52875053 52874865 ID=MsG0580027082.01.T01:five_prime_utr;Parent=MsG0580027082.01.T01
Chr5 five_prime_UTR 52874218 52874314 52874218 ID=MsG0580027082.01.T01:five_prime_utr;Parent=MsG0580027082.01.T01
Chr5 CDS 52874194 52874217 52874194 ID=MsG0580027082.01.T01:cds;Parent=MsG0580027082.01.T01
Chr5 CDS 52873388 52874041 52873388 ID=MsG0580027082.01.T01:cds;Parent=MsG0580027082.01.T01
Chr5 CDS 52872490 52872918 52872490 ID=MsG0580027082.01.T01:cds;Parent=MsG0580027082.01.T01
Chr5 CDS 52872104 52872193 52872104 ID=MsG0580027082.01.T01:cds;Parent=MsG0580027082.01.T01
Chr5 three_prime_UTR 52871922 52872103 52871922 ID=MsG0580027082.01.T01:three_prime_utr;Parent=MsG0580027082.01.T01
Gene Sequence

>MsG0580027082.01.T01

ATGGAGAAAGATAACGACTATTCGGCACCACCTATGCCACCAAGTTTCAACACACTTGATTACTCCCTTGATCATCATCATCACCAACAACAACAACAATATGAACAGCTTTTGAAGTATCGAGTTGGCGAAACATCGGGTGAAAACAACAACGGAATGGTGGATAATTACATGCCTCAAACACAAACTTCAGGAGGTTTTTATGGTGCAAACTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAATTAGCCTTAAACCGCGAAGAATCAGGTATCGAAGACCCCGTTTATTTTCTCAAGTTTCCTGTCTTAAACAATAAGATAGAAGACCAAAATTTGATGTTGAGTGGTGGTGATGGGTTAGGAGAAAATGACGAGAGGTTCAAATTAACAAGCGTGGAGGATAAATCAAGAGATCAACAAGATCACGAAGAAGCTCGAGTTTCTGATGAGAACAATTCGGTGCAAGAGAAGAATTGTGGAGTAGTGCAAGAGAACAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAACGTATGACTCACATAGCTGTTGAAAGGAATCGAAGGAAACAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAATTTGTGAGGGAATTGGAACAACTTCTTCAATGTCTAGAATCACAAAAGAGAAGGAGACTACTAGGAGAAGCACAATCAAAACAAGTTGGGGATTCATCTCTTGCATCAACACAACAACAGCCTCCATTTTTTCCAGCTCCTTTACCAAATGACCAGATGAAGCTAGTTGAGATGGAAACTGGACTTCAAGAAGAAACTGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAACTTCTAGGATTTGATGCAATGATTAAAATTCTCTCAAGGAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCTCTTGAAGATATGCAGCTCATTATCCTTCACACAAACATCACCACTATTGAACAGACAGTTCTTTATTCATTCAATGTCAAGGTAGCTAGTGATACAAGGTTTACGGCTGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA

Protein sequence

>MsG0580027082.01.T01

MEKDNDYSAPPMPPSFNTLDYSLDHHHHQQQQQYEQLLKYRVGETSGENNNGMVDNYMPQTQTSGGFYGANSFDKMSFADVMQFADFGPKLALNREESGIEDPVYFLKFPVLNNKIEDQNLMLSGGDGLGENDERFKLTSVEDKSRDQQDHEEARVSDENNSVQEKNCGVVQENNKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQVGDSSLASTQQQPPFFPAPLPNDQMKLVEMETGLQEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSM*