AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016167.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016167.01.T01 MTR_3g084830 98.187 386 7 0 1 386 29 414 0.0 788
MsG0380016167.01.T01 MTR_3g084850 98.592 142 2 0 413 554 1 142 6.13e-97 291
MsG0380016167.01.T01 MTR_3g084850 100.000 123 0 0 413 535 1 123 1.09e-84 259
MsG0380016167.01.T01 MTR_1g081290 30.943 530 327 10 54 551 41 563 8.00e-76 251
MsG0380016167.01.T01 MTR_1g081290 30.285 492 304 10 54 513 41 525 1.25e-66 226
MsG0380016167.01.T01 MTR_1g081290 30.049 406 251 8 54 428 41 444 1.97e-50 180
MsG0380016167.01.T01 MTR_6g040280 77.273 66 9 1 192 257 32 91 6.55e-27 106
MsG0380016167.01.T01 MTR_5g042243 92.000 50 4 0 192 241 40 89 9.85e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016167.01.T01 AT4G14210 84.095 547 82 2 8 553 21 563 0.0 968
MsG0380016167.01.T01 AT4G14210 84.095 547 82 2 8 553 21 563 0.0 968
MsG0380016167.01.T01 AT4G14210 84.095 547 82 2 8 553 21 563 0.0 968
MsG0380016167.01.T01 AT3G04870 30.467 535 333 10 52 554 24 551 1.88e-74 247
MsG0380016167.01.T01 AT3G04870 30.467 535 333 10 52 554 24 551 1.88e-74 247
MsG0380016167.01.T01 AT3G04870 30.467 535 333 10 52 554 24 551 1.88e-74 247
MsG0380016167.01.T01 AT3G04870 30.467 535 333 10 52 554 24 551 1.88e-74 247

Find 17 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGATTTGAAGAAAATTC+TGG 0.216400 3:+79932160 MsG0380016166.01.T01:intron
CAGGTTCCCGACAAATATTT+AGG 0.277509 3:+79932278 MsG0380016166.01.T01:intron
TCATATCAACTTTGAGGACT+TGG 0.379367 3:+79932199 MsG0380016166.01.T01:intron
AGGGCTCACATTTCATGTAT+TGG 0.386920 3:-79932349 None:intergenic
AGGTTCCCGACAAATATTTA+GGG 0.393381 3:+79932279 MsG0380016166.01.T01:intron
CCGACAAATATTTAGGGAAA+AGG 0.396111 3:+79932285 MsG0380016166.01.T01:intron
TTCGGAGCTACTTGCTGCTC+GGG 0.427072 3:+79932097 MsG0380016166.01.T01:CDS
CAAGATTTGAAGAAAATTCT+GGG 0.434521 3:+79932161 MsG0380016166.01.T01:intron
CATATCAACTTTGAGGACTT+GGG 0.460746 3:+79932200 MsG0380016166.01.T01:intron
ATTCGGAGCTACTTGCTGCT+CGG 0.494416 3:+79932096 MsG0380016166.01.T01:CDS
AATTGATAAAGTGACTCAAA+TGG 0.498942 3:-79932245 None:intergenic
GGAGCATCATATCAACTTTG+AGG 0.501921 3:+79932193 MsG0380016166.01.T01:intron
TTATCAATTCATACGAAGAC+AGG 0.503878 3:+79932259 MsG0380016166.01.T01:intron
GAAAATTCTGGGAAGAGTAC+AGG 0.507260 3:+79932172 MsG0380016166.01.T01:intron
ATATCAACTTTGAGGACTTG+GGG 0.555063 3:+79932201 MsG0380016166.01.T01:intron
TATCAACTTTGAGGACTTGG+GGG 0.628380 3:+79932202 MsG0380016166.01.T01:intron
TCGGAGCTACTTGCTGCTCG+GGG 0.645359 3:+79932098 MsG0380016166.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATTTAACAAAAAAT+TGG - Chr3:79930204-79930223 None:intergenic 10.0%
!! TAATATAATTTCAAATGAAA+AGG + Chr3:79926469-79926488 MsG0380016166.01.T01:intron 10.0%
!!! AGTTATACTAAAATTTTAAA+TGG - Chr3:79928161-79928180 None:intergenic 10.0%
!!! ATTTGAATTTTAATGATAAA+AGG - Chr3:79928910-79928929 None:intergenic 10.0%
!!! CAATTTTTTGTTAAATATTT+TGG + Chr3:79930202-79930221 MsG0380016166.01.T01:intron 10.0%
!! ATATTATTGAATTCTTCAAT+AGG + Chr3:79929714-79929733 MsG0380016166.01.T01:intron 15.0%
!! ATTACTTTACAAATTGAAAT+AGG - Chr3:79930426-79930445 None:intergenic 15.0%
!! ATTCTAAATAAATGATTTAC+TGG + Chr3:79927526-79927545 MsG0380016166.01.T01:intron 15.0%
!! ATTGTTTATTCCATATTATA+GGG + Chr3:79929395-79929414 MsG0380016166.01.T01:intron 15.0%
!! CTTGAATTATTAAATTACTT+AGG - Chr3:79926809-79926828 None:intergenic 15.0%
!!! ATTCAAAAACAAATTTTATC+AGG - Chr3:79928060-79928079 None:intergenic 15.0%
!!! TGTTTTAAGAATTAATTTTC+CGG + Chr3:79926833-79926852 MsG0380016166.01.T01:intron 15.0%
!!! TTATTTCAGTTTTTTGTTAT+TGG + Chr3:79931120-79931139 MsG0380016166.01.T01:intron 15.0%
!!! TTCCATATTTTTTTCTTTAT+CGG - Chr3:79926426-79926445 None:intergenic 15.0%
!! AAAATTTGAATAGAAATCTG+CGG + Chr3:79930276-79930295 MsG0380016166.01.T01:intron 20.0%
!! AAATAGTCAACATGATATTA+TGG - Chr3:79926497-79926516 None:intergenic 20.0%
!! AAATTCAGTTTGTAAGATAA+GGG - Chr3:79931859-79931878 None:intergenic 20.0%
!! AATGAAATTGAAAAGAGTAA+TGG - Chr3:79925424-79925443 None:intergenic 20.0%
!! ACAAATGAGATTAAATTAGT+CGG - Chr3:79926700-79926719 None:intergenic 20.0%
!! AGCATGAAAATAAAGTAATA+TGG - Chr3:79928949-79928968 None:intergenic 20.0%
!! ATCAATAGATTTATATTCCT+TGG + Chr3:79928718-79928737 MsG0380016166.01.T01:intron 20.0%
!! ATGCTAGTATTTAATCAATA+TGG + Chr3:79927555-79927574 MsG0380016166.01.T01:intron 20.0%
!! CAAATGTAATATGAATGAAA+AGG - Chr3:79929599-79929618 None:intergenic 20.0%
!! CATTGTTTATTCCATATTAT+AGG + Chr3:79929394-79929413 MsG0380016166.01.T01:intron 20.0%
!! GCTATTAATTAATTGTTCAT+TGG + Chr3:79929971-79929990 MsG0380016166.01.T01:intron 20.0%
!! TAAATTATGCACTAAAATTC+TGG + Chr3:79929016-79929035 MsG0380016166.01.T01:intron 20.0%
!! TATACTACATTTATAGTATG+TGG + Chr3:79927941-79927960 MsG0380016166.01.T01:intron 20.0%
!! TATTTACATATCAAATTTGC+AGG + Chr3:79930606-79930625 MsG0380016166.01.T01:intron 20.0%
!! TCAAAAATTCATCTTTCAAA+TGG + Chr3:79925451-79925470 MsG0380016166.01.T01:five_prime_UTR 20.0%
!! TGATTTAACACAAACATATA+CGG - Chr3:79931042-79931061 None:intergenic 20.0%
!! TTTAGTGTAAATGAAGAAAA+AGG + Chr3:79928116-79928135 MsG0380016166.01.T01:intron 20.0%
!! TTTGATACAAAAAACAAGAT+GGG - Chr3:79925838-79925857 None:intergenic 20.0%
!!! AAAAACTGAAATAATTTGTG+TGG - Chr3:79931114-79931133 None:intergenic 20.0%
!!! AAAAGCTTTTTACTAACTAA+TGG + Chr3:79929886-79929905 MsG0380016166.01.T01:five_prime_UTR 20.0%
!!! AAAGCTTTTTACTAACTAAT+GGG + Chr3:79929887-79929906 MsG0380016166.01.T01:five_prime_UTR 20.0%
!!! ACAAAAATATTTAGCTTCTA+TGG + Chr3:79931632-79931651 MsG0380016166.01.T01:CDS 20.0%
!!! AGAATAAATTTTATCAACCT+TGG + Chr3:79929271-79929290 MsG0380016166.01.T01:intron 20.0%
!!! ATTTGTTGTTTTTGTTCTAT+TGG + Chr3:79925877-79925896 MsG0380016166.01.T01:intron 20.0%
!!! GAATAAATTTTATCAACCTT+GGG + Chr3:79929272-79929291 MsG0380016166.01.T01:intron 20.0%
!!! TCTGAAATTTAGTTCTTAAT+TGG - Chr3:79927353-79927372 None:intergenic 20.0%
!!! TTTGTTGTTTTTGTTCTATT+GGG + Chr3:79925878-79925897 MsG0380016166.01.T01:intron 20.0%
!!! TTTTGATACAAAAAACAAGA+TGG - Chr3:79925839-79925858 None:intergenic 20.0%
! AAACAATGTGTTATACTCAA+AGG - Chr3:79929382-79929401 None:intergenic 25.0%
! AAACAGCTTATACATAAGAA+AGG - Chr3:79926217-79926236 None:intergenic 25.0%
! AAATCTTGTCAGTTTGTAAA+TGG + Chr3:79928793-79928812 MsG0380016166.01.T01:intron 25.0%
! AACAATGTGTTATACTCAAA+GGG - Chr3:79929381-79929400 None:intergenic 25.0%
! AACATATTGCAATCTTCTAA+TGG + Chr3:79929308-79929327 MsG0380016166.01.T01:intron 25.0%
! AATCCAAAAGAAAAAGAAAG+AGG - Chr3:79926559-79926578 None:intergenic 25.0%
! AATTGATAAAGTGACTCAAA+TGG - Chr3:79932248-79932267 None:intergenic 25.0%
! ACAAGATTTGAAGAAAATTC+TGG + Chr3:79932160-79932179 MsG0380016166.01.T01:intron 25.0%
! ACATAAGTGTTTGTTTAACA+AGG + Chr3:79929573-79929592 MsG0380016166.01.T01:intron 25.0%
! AGAACTAAATTTCAGAAAGA+AGG + Chr3:79927357-79927376 MsG0380016166.01.T01:intron 25.0%
! AGAGATAAAAAAAGTGAAAC+TGG + Chr3:79927123-79927142 MsG0380016166.01.T01:intron 25.0%
! AGTATAACTAAATTGCTCTA+TGG + Chr3:79928199-79928218 MsG0380016166.01.T01:intron 25.0%
! ATGTGAAATGAAAACACAAA+TGG + Chr3:79928319-79928338 MsG0380016166.01.T01:intron 25.0%
! CAAGATTTGAAGAAAATTCT+GGG + Chr3:79932161-79932180 MsG0380016166.01.T01:intron 25.0%
! CACATTTAAATTGGCAAATT+GGG + Chr3:79925498-79925517 MsG0380016166.01.T01:five_prime_UTR 25.0%
! CATTAAGTAAGAAAATACGT+TGG - Chr3:79928469-79928488 None:intergenic 25.0%
! CTAAACATATACTGAACTTA+TGG + Chr3:79931466-79931485 MsG0380016166.01.T01:intron 25.0%
! GAAATTCAGTTTGTAAGATA+AGG - Chr3:79931860-79931879 None:intergenic 25.0%
! GACTTAATATGATCAACAAT+TGG - Chr3:79929799-79929818 None:intergenic 25.0%
! GAGAAAATCAAATTTGCAAT+TGG + Chr3:79928575-79928594 MsG0380016166.01.T01:five_prime_UTR 25.0%
! GATTTAACACAAACATATAC+GGG - Chr3:79931041-79931060 None:intergenic 25.0%
! GTACGTGTTTAAAAAATAGA+AGG - Chr3:79927883-79927902 None:intergenic 25.0%
! TAATAAATTGTGTGACTGTT+CGG - Chr3:79926321-79926340 None:intergenic 25.0%
! TAATTGTTCATTGGAATTCT+TGG + Chr3:79929980-79929999 MsG0380016166.01.T01:intron 25.0%
! TATCATCACCACATTTAAAT+TGG + Chr3:79925489-79925508 MsG0380016166.01.T01:five_prime_UTR 25.0%
! TCTGCATTTAACTATTTGTT+TGG + Chr3:79931156-79931175 MsG0380016166.01.T01:intron 25.0%
! TCTTACAACTTACCATTTAA+CGG - Chr3:79927791-79927810 None:intergenic 25.0%
! TGAAACAAGATGTGATAAAT+TGG + Chr3:79928287-79928306 MsG0380016166.01.T01:intron 25.0%
! TGAACAATTAATTAATAGCG+TGG - Chr3:79929970-79929989 None:intergenic 25.0%
! TGAACTTACAGAATATATGT+AGG - Chr3:79927021-79927040 None:intergenic 25.0%
! TGCCGATAAAGAAAAAAATA+TGG + Chr3:79926421-79926440 MsG0380016166.01.T01:intron 25.0%
! TGTGAAATGAAAACACAAAT+GGG + Chr3:79928320-79928339 MsG0380016166.01.T01:intron 25.0%
! TGTTAAACAAACACTTATGT+AGG - Chr3:79929573-79929592 None:intergenic 25.0%
! TTAAAGAAACTTTCAACTTC+AGG - Chr3:79927847-79927866 None:intergenic 25.0%
! TTAAATTACTTAGGAACAGT+CGG - Chr3:79926800-79926819 None:intergenic 25.0%
! TTCAACCAAATCAATTACTT+TGG - Chr3:79931933-79931952 None:intergenic 25.0%
!! AAATATTTAGCTTCTATGGA+AGG + Chr3:79931636-79931655 MsG0380016166.01.T01:CDS 25.0%
!! TCCTAATAATTTTCACTGAT+GGG + Chr3:79929195-79929214 MsG0380016166.01.T01:intron 25.0%
!! TGTGTTTCACTATCTTATTT+AGG + Chr3:79931212-79931231 MsG0380016166.01.T01:intron 25.0%
!! TTTCGTTGTTATTCTGAATT+TGG - Chr3:79930525-79930544 None:intergenic 25.0%
!! TTTTAATGCGTGAATTAAGA+TGG - Chr3:79929837-79929856 None:intergenic 25.0%
!! TTTTTCTTTCTTCACTAATC+TGG + Chr3:79928404-79928423 MsG0380016166.01.T01:intron 25.0%
!!! AAAATAGAAGGTATTTCATG+TGG - Chr3:79927871-79927890 None:intergenic 25.0%
!!! AAGTAATTGATTTGGTTGAA+TGG + Chr3:79931933-79931952 MsG0380016166.01.T01:intron 25.0%
!!! ATTGCAAATTTGATTTTCTC+TGG - Chr3:79928575-79928594 None:intergenic 25.0%
!!! GTTCATGATTATTTTTAGTG+TGG + Chr3:79932326-79932345 MsG0380016166.01.T01:intron 25.0%
!!! GTTGATTTTGATATGGTTTT+TGG - Chr3:79925524-79925543 None:intergenic 25.0%
!!! TATAATTCAAAAGTGCTATC+CGG - Chr3:79930825-79930844 None:intergenic 25.0%
!!! TCTATTTTTTAAACACGTAC+AGG + Chr3:79927883-79927902 MsG0380016166.01.T01:intron 25.0%
!!! TTCTTTTTTGTTGTGTGAAA+TGG + Chr3:79930778-79930797 MsG0380016166.01.T01:intron 25.0%
!!! TTTGATTTTCAAATTATCCC+AGG + Chr3:79926581-79926600 MsG0380016166.01.T01:intron 25.0%
!!! TTTTTTATCTCTCTTAGCAA+TGG - Chr3:79927115-79927134 None:intergenic 25.0%
AAACTATTACAACCAGTCAA+AGG - Chr3:79930355-79930374 None:intergenic 30.0%
AAAGAAATAATCCAACTCAG+TGG - Chr3:79931434-79931453 None:intergenic 30.0%
AAGAAATAATCCAACTCAGT+GGG - Chr3:79931433-79931452 None:intergenic 30.0%
AAGTATATTACTGCTTCAGT+TGG - Chr3:79930457-79930476 None:intergenic 30.0%
AATGGAAAAAGGTTTACTGA+AGG - Chr3:79927097-79927116 None:intergenic 30.0%
AATGTCAAAACCAGGAATAT+GGG + Chr3:79928517-79928536 MsG0380016166.01.T01:intron 30.0%
ATAGAAGGTTTCTATTTAGC+TGG + Chr3:79931597-79931616 MsG0380016166.01.T01:CDS 30.0%
ATATGAGTTCATAGAAGAAG+AGG - Chr3:79925546-79925565 None:intergenic 30.0%
ATGTGTTCTTTATGCATGAA+AGG + Chr3:79926180-79926199 MsG0380016166.01.T01:intron 30.0%
ATTGCATTGAAAGTTCATCA+GGG - Chr3:79929484-79929503 None:intergenic 30.0%
ATTTAATATTCTCCCACACT+TGG - Chr3:79929124-79929143 None:intergenic 30.0%
CAGTCATAAATGTTCACATA+TGG + Chr3:79930128-79930147 MsG0380016166.01.T01:five_prime_UTR 30.0%
CATATAAGTAGATCATGAAG+CGG - Chr3:79931899-79931918 None:intergenic 30.0%
CATATGTGAACATTTATGAC+TGG - Chr3:79930130-79930149 None:intergenic 30.0%
CCAATTTGCCAATTTAAATG+TGG - Chr3:79925500-79925519 None:intergenic 30.0%
CCACATTTAAATTGGCAAAT+TGG + Chr3:79925497-79925516 MsG0380016166.01.T01:five_prime_UTR 30.0%
CTACTTATTGCAAATAGTCT+GGG + Chr3:79929332-79929351 MsG0380016166.01.T01:intron 30.0%
GAACTCCAAAGTAATTGATT+TGG + Chr3:79931925-79931944 MsG0380016166.01.T01:intron 30.0%
GAGTTATATTATCCTTTGAC+TGG + Chr3:79930340-79930359 MsG0380016166.01.T01:intron 30.0%
GATAAAAAAAGTGAAACTGG+AGG + Chr3:79927126-79927145 MsG0380016166.01.T01:intron 30.0%
GCTAAATAGAAACCTTCTAT+AGG - Chr3:79931597-79931616 None:intergenic 30.0%
GTATTAATGATCGGTTACAA+TGG + Chr3:79927684-79927703 MsG0380016166.01.T01:five_prime_UTR 30.0%
GTGAAAATTATTAGGACAGA+CGG - Chr3:79929191-79929210 None:intergenic 30.0%
GTGAAATGAAAACACAAATG+GGG + Chr3:79928321-79928340 MsG0380016166.01.T01:intron 30.0%
GTTATTCCTTAATCTGAACT+CGG - Chr3:79928013-79928032 None:intergenic 30.0%
GTTGATCATATTAAGTCCTT+GGG + Chr3:79929802-79929821 MsG0380016166.01.T01:five_prime_UTR 30.0%
GTTGATTGTAATCACATATG+TGG + Chr3:79926043-79926062 MsG0380016166.01.T01:intron 30.0%
GTTTGTAATATTTGTCAGTG+AGG + Chr3:79930548-79930567 MsG0380016166.01.T01:intron 30.0%
TAAATAGAATGTCAGCATAC+TGG - Chr3:79930592-79930611 None:intergenic 30.0%
TAAATTTCAGAAAGAAGGCA+TGG + Chr3:79927362-79927381 MsG0380016166.01.T01:intron 30.0%
TAACAAATACATTTGAGTGG+CGG - Chr3:79930953-79930972 None:intergenic 30.0%
TAGAAGATTGCAATATGTTC+AGG - Chr3:79929307-79929326 None:intergenic 30.0%
TCCCATCAGTGAAAATTATT+AGG - Chr3:79929199-79929218 None:intergenic 30.0%
TCCTCAAAATTGTGAAGAAA+TGG - Chr3:79930009-79930028 None:intergenic 30.0%
TCTACTTATTGCAAATAGTC+TGG + Chr3:79929331-79929350 MsG0380016166.01.T01:intron 30.0%
TCTATAGGAGATCTTTGTAA+GGG - Chr3:79931582-79931601 None:intergenic 30.0%
TCTTACAAACTGAATTTCTG+AGG + Chr3:79931862-79931881 MsG0380016166.01.T01:intron 30.0%
TGCTAACAAATACATTTGAG+TGG - Chr3:79930956-79930975 None:intergenic 30.0%
TGTTCACATATGGTAAGTAA+TGG + Chr3:79930138-79930157 MsG0380016166.01.T01:intron 30.0%
TGTTGATCATATTAAGTCCT+TGG + Chr3:79929801-79929820 MsG0380016166.01.T01:five_prime_UTR 30.0%
TTACAAAGATCTCCTATAGA+AGG + Chr3:79931582-79931601 MsG0380016166.01.T01:CDS 30.0%
TTATCAATTCATACGAAGAC+AGG + Chr3:79932259-79932278 MsG0380016166.01.T01:intron 30.0%
TTATTCCTTAATCTGAACTC+GGG - Chr3:79928012-79928031 None:intergenic 30.0%
TTCTATAGGAGATCTTTGTA+AGG - Chr3:79931583-79931602 None:intergenic 30.0%
! AAAATCCCAATGATGGAAAA+AGG - Chr3:79927309-79927328 None:intergenic 30.0%
! AAATTTCAGAAAGAAGGCAT+GGG + Chr3:79927363-79927382 MsG0380016166.01.T01:intron 30.0%
! AATTGAGTCTTGTCTTCTAA+TGG + Chr3:79925940-79925959 MsG0380016166.01.T01:intron 30.0%
! AATTTTTGTGCCTATGTGAT+GGG + Chr3:79927965-79927984 MsG0380016166.01.T01:intron 30.0%
! ATCTTTCAAATGGCTCTATA+TGG + Chr3:79925461-79925480 MsG0380016166.01.T01:five_prime_UTR 30.0%
! ATGGTATTTCTGTCAAAGAA+TGG + Chr3:79928645-79928664 MsG0380016166.01.T01:five_prime_UTR 30.0%
! ATTCAGGTTAGGTCAATATT+CGG - Chr3:79931817-79931836 None:intergenic 30.0%
! CAAAAGACTTTTGCATGAAT+GGG + Chr3:79927416-79927435 MsG0380016166.01.T01:intron 30.0%
! CCTTTTCCCTAAATATTTGT+CGG - Chr3:79932288-79932307 None:intergenic 30.0%
! CTTGATAGCTAAAACTTTCA+TGG - Chr3:79931988-79932007 None:intergenic 30.0%
! CTTTTCCCTAAATATTTGTC+GGG - Chr3:79932287-79932306 None:intergenic 30.0%
! CTTTTTACTAACTAATGGGA+AGG + Chr3:79929891-79929910 MsG0380016166.01.T01:five_prime_UTR 30.0%
! GTCCTAATAATTTTCACTGA+TGG + Chr3:79929194-79929213 MsG0380016166.01.T01:intron 30.0%
! GTTTTCTTTTTCCCAAAGTT+GGG + Chr3:79927624-79927643 MsG0380016166.01.T01:intron 30.0%
! TCAAAAGACTTTTGCATGAA+TGG + Chr3:79927415-79927434 MsG0380016166.01.T01:intron 30.0%
! TCAGAATATCCACTGTTTTA+AGG - Chr3:79930039-79930058 None:intergenic 30.0%
! TCCATTTCTTCACAATTTTG+AGG + Chr3:79930005-79930024 MsG0380016166.01.T01:intron 30.0%
! TGATGATTTTTGCTTTGCTT+TGG - Chr3:79931377-79931396 None:intergenic 30.0%
! TTATATCCACTATTCAGGTT+AGG - Chr3:79931828-79931847 None:intergenic 30.0%
! TTTTCTTTTTCCCAAAGTTG+GGG + Chr3:79927625-79927644 MsG0380016166.01.T01:intron 30.0%
! TTTTGCATGAATGGGAAATT+TGG + Chr3:79927424-79927443 MsG0380016166.01.T01:intron 30.0%
!! AAACTATCGAAGAGTGTTTA+TGG + Chr3:79926241-79926260 MsG0380016166.01.T01:intron 30.0%
!! AGAAGAGGTTGATTTTGATA+TGG - Chr3:79925531-79925550 None:intergenic 30.0%
!! ATTTTCTAGTAGCGTTTCAA+TGG + Chr3:79925583-79925602 MsG0380016166.01.T01:five_prime_UTR 30.0%
!! CAGAATATCCACTGTTTTAA+GGG - Chr3:79930038-79930057 None:intergenic 30.0%
!! TTGACTGGTTGTAATAGTTT+TGG + Chr3:79930355-79930374 MsG0380016166.01.T01:intron 30.0%
!! TTTTCTAGTAGCGTTTCAAT+GGG + Chr3:79925584-79925603 MsG0380016166.01.T01:five_prime_UTR 30.0%
!!! AATGCATTTTGAAGCTATAG+CGG + Chr3:79928087-79928106 MsG0380016166.01.T01:intron 30.0%
!!! ATTCTGAGATGAGTTGTTTT+AGG + Chr3:79928850-79928869 MsG0380016166.01.T01:intron 30.0%
!!! ATTTTTTTCTTTATCGGCAC+AGG - Chr3:79926420-79926439 None:intergenic 30.0%
AAAAACCCGAGTTCAGATTA+AGG + Chr3:79928004-79928023 MsG0380016166.01.T01:intron 35.0%
AAAACACAAATGGGGATCAA+GGG + Chr3:79928329-79928348 MsG0380016166.01.T01:intron 35.0%
AACTTACCATTTAACGGAGA+TGG - Chr3:79927785-79927804 None:intergenic 35.0%
AAGAAAACCTGCTAAAGAGA+AGG - Chr3:79930664-79930683 None:intergenic 35.0%
AAGGATCAAAATCCCAATGA+TGG - Chr3:79927316-79927335 None:intergenic 35.0%
AATAGTCAATACATGTGCCA+AGG - Chr3:79927483-79927502 None:intergenic 35.0%
AATGGATGAGAAAACAGGTA+TGG + Chr3:79928663-79928682 MsG0380016166.01.T01:intron 35.0%
AATTTCATCAGGGAAGAGTT+TGG - Chr3:79931346-79931365 None:intergenic 35.0%
ACAACCTTCAAAGGTTTAGT+AGG - Chr3:79925791-79925810 None:intergenic 35.0%
ACAATGTAGTCGGTTACATT+AGG - Chr3:79931514-79931533 None:intergenic 35.0%
ACTACGTGAAATCCATTCTT+CGG - Chr3:79931286-79931305 None:intergenic 35.0%
ACTAGTAGAAGGTCAAAGAA+TGG - Chr3:79927232-79927251 None:intergenic 35.0%
AGAGTAATGGCAATTGATGA+TGG - Chr3:79925411-79925430 None:intergenic 35.0%
AGGTTCCCGACAAATATTTA+GGG + Chr3:79932279-79932298 MsG0380016166.01.T01:intron 35.0%
AGTGTTCATAGCAATGTCAA+AGG + Chr3:79929442-79929461 MsG0380016166.01.T01:five_prime_UTR 35.0%
ATAAAGCCTTCACTCATTGT+TGG - Chr3:79926382-79926401 None:intergenic 35.0%
ATAGTCAATACATGTGCCAA+GGG - Chr3:79927482-79927501 None:intergenic 35.0%
ATCCAGTGTTTGTGAAACAT+AGG + Chr3:79929657-79929676 MsG0380016166.01.T01:intron 35.0%
ATCCTATGTTTCACAAACAC+TGG - Chr3:79929662-79929681 None:intergenic 35.0%
ATGCTGTGTTAAAACTTCCA+AGG - Chr3:79928036-79928055 None:intergenic 35.0%
ATGGACTTTCATATCAACTC+AGG + Chr3:79931952-79931971 MsG0380016166.01.T01:intron 35.0%
ATTCTTCAATAGGAGAAGCA+TGG + Chr3:79929724-79929743 MsG0380016166.01.T01:intron 35.0%
ATTGGCATACAAAGTCTTTC+AGG - Chr3:79929781-79929800 None:intergenic 35.0%
CAAAGAATGGATGAGAAAAC+AGG + Chr3:79928658-79928677 MsG0380016166.01.T01:five_prime_UTR 35.0%
CAAATAGGTTCTGCACATTA+GGG - Chr3:79927655-79927674 None:intergenic 35.0%
CAACTAATTTCTCCAATCTC+TGG - Chr3:79930102-79930121 None:intergenic 35.0%
CACTGATGGGAAATAAAGAA+AGG + Chr3:79929208-79929227 MsG0380016166.01.T01:intron 35.0%
CAGAGATTGGAGAAATTAGT+TGG + Chr3:79930100-79930119 MsG0380016166.01.T01:five_prime_UTR 35.0%
CATTGCATTGAAAGTTCATC+AGG - Chr3:79929485-79929504 None:intergenic 35.0%
CCGACAAATATTTAGGGAAA+AGG + Chr3:79932285-79932304 MsG0380016166.01.T01:intron 35.0%
CGCTTCATGATCTACTTATA+TGG + Chr3:79931897-79931916 MsG0380016166.01.T01:intron 35.0%
CGTAGTGACGAAGATATTAT+CGG + Chr3:79931300-79931319 MsG0380016166.01.T01:CDS 35.0%
CTAGAAGGGATAAAAGATAG+AGG + Chr3:79930708-79930727 MsG0380016166.01.T01:intron 35.0%
CTTACAAGTTACTGACATGT+CGG - Chr3:79930923-79930942 None:intergenic 35.0%
CTTGTCAGTTTGTAAATGGA+GGG + Chr3:79928797-79928816 MsG0380016166.01.T01:intron 35.0%
GAATGTCAAAACCAGGAATA+TGG + Chr3:79928516-79928535 MsG0380016166.01.T01:intron 35.0%
GAGAACTCGGTATTAATGAT+CGG + Chr3:79927675-79927694 MsG0380016166.01.T01:five_prime_UTR 35.0%
GTTGTAAGACTTTACGTATG+TGG + Chr3:79927802-79927821 MsG0380016166.01.T01:intron 35.0%
TAATACCGAGTTCTCCAAAT+AGG - Chr3:79927670-79927689 None:intergenic 35.0%
TAATGATCGGTTACAATGGA+AGG + Chr3:79927688-79927707 MsG0380016166.01.T01:five_prime_UTR 35.0%
TATATTACTGCTTCAGTTGG+TGG - Chr3:79930454-79930473 None:intergenic 35.0%
TATTGACCTAACCTGAATAG+TGG + Chr3:79931819-79931838 MsG0380016166.01.T01:intron 35.0%
TCAATGCAAACAACCTTCAA+AGG - Chr3:79925686-79925705 None:intergenic 35.0%
TCAGATTAAGGAATAACCCT+TGG + Chr3:79928016-79928035 MsG0380016166.01.T01:intron 35.0%
TCCACTTATATCCACTATTC+AGG - Chr3:79931833-79931852 None:intergenic 35.0%
TCTATACTTTCTTTCTCCTG+TGG - Chr3:79927183-79927202 None:intergenic 35.0%
TCTCTCTTAGCAATGGAAAA+AGG - Chr3:79927108-79927127 None:intergenic 35.0%
TCTTGTCAGTTTGTAAATGG+AGG + Chr3:79928796-79928815 MsG0380016166.01.T01:intron 35.0%
TGCTGTGTTAAAACTTCCAA+GGG - Chr3:79928035-79928054 None:intergenic 35.0%
TGTCTTTAATACGCAGGATT+CGG + Chr3:79932079-79932098 MsG0380016166.01.T01:intron 35.0%
TTAACAGTATCATCAAGCTC+AGG - Chr3:79925719-79925738 None:intergenic 35.0%
TTCAGGAATGCCCTATAATA+TGG - Chr3:79929408-79929427 None:intergenic 35.0%
TTGGCATACAAAGTCTTTCA+GGG - Chr3:79929780-79929799 None:intergenic 35.0%
TTGTCAGTTTGTAAATGGAG+GGG + Chr3:79928798-79928817 MsG0380016166.01.T01:intron 35.0%
TTGTCTTGATTCCATAACTG+TGG + Chr3:79928689-79928708 MsG0380016166.01.T01:intron 35.0%
! ATATCAACTTTGAGGACTTG+GGG + Chr3:79932201-79932220 MsG0380016166.01.T01:intron 35.0%
! ATCTTCGATTTTGCTCTTCT+TGG + Chr3:79926725-79926744 MsG0380016166.01.T01:intron 35.0%
! CAATGCCTTTTTCCATCATT+GGG + Chr3:79927301-79927320 MsG0380016166.01.T01:intron 35.0%
! CAATTTTTGTGCCTATGTGA+TGG + Chr3:79927964-79927983 MsG0380016166.01.T01:intron 35.0%
! CATATCAACTTTGAGGACTT+GGG + Chr3:79932200-79932219 MsG0380016166.01.T01:intron 35.0%
! CGTTTTCTTTTTCCCAAAGT+TGG + Chr3:79927623-79927642 MsG0380016166.01.T01:intron 35.0%
! CTCTATCTTTTATCCCTTCT+AGG - Chr3:79930710-79930729 None:intergenic 35.0%
! CTTGTCAACTGCAAAGTATT+TGG + Chr3:79926613-79926632 MsG0380016166.01.T01:five_prime_UTR 35.0%
! GAATTAATTTTCCGGCTCTT+TGG + Chr3:79926841-79926860 MsG0380016166.01.T01:intron 35.0%
! GGAAGTCTTATAAACATACC+TGG - Chr3:79929949-79929968 None:intergenic 35.0%
! TCATATCAACTTTGAGGACT+TGG + Chr3:79932199-79932218 MsG0380016166.01.T01:intron 35.0%
! TGCTTTAAACCGATTTCTTC+AGG + Chr3:79929514-79929533 MsG0380016166.01.T01:five_prime_UTR 35.0%
! TGGCCTCTTTCTTTTTCTTT+TGG + Chr3:79926553-79926572 MsG0380016166.01.T01:intron 35.0%
! TTCTCCAATCTCTGGAAATA+AGG - Chr3:79930094-79930113 None:intergenic 35.0%
! TTTCAATGGGTCTTAACTTG+AGG + Chr3:79925597-79925616 MsG0380016166.01.T01:five_prime_UTR 35.0%
! TTTTCAAATTATCCCAGGAC+TGG + Chr3:79926586-79926605 MsG0380016166.01.T01:intron 35.0%
!! AAATTTGATTTTCTCTGGCC+AGG - Chr3:79928570-79928589 None:intergenic 35.0%
!! ACCTGAATAGTGGATATAAG+TGG + Chr3:79931829-79931848 MsG0380016166.01.T01:intron 35.0%
!! ATCAGGGTTGATGAAGTTTA+GGG - Chr3:79929468-79929487 None:intergenic 35.0%
!!! AATATCCACTGTTTTAAGGG+AGG - Chr3:79930035-79930054 None:intergenic 35.0%
!!! AGTCTTTTGAGATTGAAGCT+TGG - Chr3:79927405-79927424 None:intergenic 35.0%
!!! TGAAATTTTCAAGTCACGAC+AGG - Chr3:79928768-79928787 None:intergenic 35.0%
!!! TGAGATGAGTTGTTTTAGGA+TGG + Chr3:79928854-79928873 MsG0380016166.01.T01:intron 35.0%
AAACACTTGTGATGCCTAGA+AGG + Chr3:79930693-79930712 MsG0380016166.01.T01:intron 40.0%
AACACTTGTGATGCCTAGAA+GGG + Chr3:79930694-79930713 MsG0380016166.01.T01:intron 40.0%
ACCACGTTGTTAAAACACCA+AGG + Chr3:79931400-79931419 MsG0380016166.01.T01:CDS 40.0%
ACTAATGGGAAGGTGATTGA+AGG + Chr3:79929901-79929920 MsG0380016166.01.T01:five_prime_UTR 40.0%
ACTTCATCAGTTACACGTTC+AGG - Chr3:79929425-79929444 None:intergenic 40.0%
AGTTTCCTTACTTCCAAGTG+TGG + Chr3:79929108-79929127 MsG0380016166.01.T01:intron 40.0%
ATAGAATGTCAGCATACTGG+TGG - Chr3:79930589-79930608 None:intergenic 40.0%
ATGATCACCTTCTCTTTAGC+AGG + Chr3:79930654-79930673 MsG0380016166.01.T01:intron 40.0%
ATGATCGCACCTGAAGAAAT+CGG - Chr3:79929526-79929545 None:intergenic 40.0%
ATGCTGTGAATGTCAAAACC+AGG + Chr3:79928509-79928528 MsG0380016166.01.T01:intron 40.0%
ATTATTAGGACAGACGGCAT+TGG - Chr3:79929185-79929204 None:intergenic 40.0%
CACTGACACTTCTCATCAAA+AGG - Chr3:79926115-79926134 None:intergenic 40.0%
CAGAACCTATTTGGAGAACT+CGG + Chr3:79927662-79927681 MsG0380016166.01.T01:five_prime_UTR 40.0%
CAGGTTCCCGACAAATATTT+AGG + Chr3:79932278-79932297 MsG0380016166.01.T01:intron 40.0%
CATTATCGTCATCAAGTCAC+TGG - Chr3:79928884-79928903 None:intergenic 40.0%
CATTGCTGTCTTTAATACGC+AGG + Chr3:79932073-79932092 MsG0380016166.01.T01:intron 40.0%
CCAAATAGGTTCTGCACATT+AGG - Chr3:79927656-79927675 None:intergenic 40.0%
CCAGCAATAACAACCTTCAA+AGG - Chr3:79925800-79925819 None:intergenic 40.0%
CCTAATGTGCAGAACCTATT+TGG + Chr3:79927653-79927672 MsG0380016166.01.T01:five_prime_UTR 40.0%
CTAATGGGAAGGTGATTGAA+GGG + Chr3:79929902-79929921 MsG0380016166.01.T01:five_prime_UTR 40.0%
CTCTTTCCTTCTTTGCATTC+CGG + Chr3:79930803-79930822 MsG0380016166.01.T01:intron 40.0%
CTGACCTGAAACAATGTAGT+CGG - Chr3:79931524-79931543 None:intergenic 40.0%
CTGCTAAGTGTAACAGGTTA+AGG + Chr3:79925648-79925667 MsG0380016166.01.T01:five_prime_UTR 40.0%
CTTCTACTAGTGTATGCTCT+CGG + Chr3:79927241-79927260 MsG0380016166.01.T01:intron 40.0%
GAAAACACAAATGGGGATCA+AGG + Chr3:79928328-79928347 MsG0380016166.01.T01:intron 40.0%
GATCATATTAAGTCCTTGGG+CGG + Chr3:79929805-79929824 MsG0380016166.01.T01:five_prime_UTR 40.0%
GATTTCCTCCCTTAAAACAG+TGG + Chr3:79930027-79930046 MsG0380016166.01.T01:intron 40.0%
GGTCTGCAGAAATTTCATCA+GGG - Chr3:79931356-79931375 None:intergenic 40.0%
GGTTAGGTCAATATTCGGTA+TGG - Chr3:79931812-79931831 None:intergenic 40.0%
GTAACCGACTACATTGTTTC+AGG + Chr3:79931517-79931536 MsG0380016166.01.T01:intron 40.0%
GTCAATCCAACAATGAGTGA+AGG + Chr3:79926373-79926392 MsG0380016166.01.T01:intron 40.0%
GTCGGCATATACACTTAGAA+GGG - Chr3:79930905-79930924 None:intergenic 40.0%
GTTTCCTTACTTCCAAGTGT+GGG + Chr3:79929109-79929128 MsG0380016166.01.T01:intron 40.0%
TAACCCAAACCAGTCTATGT+TGG + Chr3:79931242-79931261 MsG0380016166.01.T01:CDS 40.0%
TAATACTTGTGTGCGAGCTT+TGG + Chr3:79926533-79926552 MsG0380016166.01.T01:intron 40.0%
TAATGGGAAGGTGATTGAAG+GGG + Chr3:79929903-79929922 MsG0380016166.01.T01:five_prime_UTR 40.0%
TACCATTTAACGGAGATGGA+AGG - Chr3:79927781-79927800 None:intergenic 40.0%
TAGTCGGTTACATTAGGACT+CGG - Chr3:79931508-79931527 None:intergenic 40.0%
TATATCACCAGTCAAGGTCA+TGG + Chr3:79928742-79928761 MsG0380016166.01.T01:intron 40.0%
TCAAATCGACTAAACTCTCC+AGG - Chr3:79927746-79927765 None:intergenic 40.0%
TCGGCATATACACTTAGAAG+GGG - Chr3:79930904-79930923 None:intergenic 40.0%
TCGTCCTACTAAACCTTTGA+AGG + Chr3:79925784-79925803 MsG0380016166.01.T01:five_prime_UTR 40.0%
TGAATAGAAATCTGCGGTTG+TGG + Chr3:79930282-79930301 MsG0380016166.01.T01:intron 40.0%
TGGCATACAAAGTCTTTCAG+GGG - Chr3:79929779-79929798 None:intergenic 40.0%
TGGTCTGCAGAAATTTCATC+AGG - Chr3:79931357-79931376 None:intergenic 40.0%
TGTAACAGGTTAAGGAACCA+TGG + Chr3:79925656-79925675 MsG0380016166.01.T01:five_prime_UTR 40.0%
TGTCGGCATATACACTTAGA+AGG - Chr3:79930906-79930925 None:intergenic 40.0%
TTCAAAGGTTTAGTAGGACG+AGG - Chr3:79925785-79925804 None:intergenic 40.0%
TTCTTCCTGAGAACTGGAAA+GGG + Chr3:79930065-79930084 MsG0380016166.01.T01:five_prime_UTR 40.0%
TTGATGAACTGCCACAGTTA+TGG - Chr3:79928703-79928722 None:intergenic 40.0%
TTTGGCAAGTTCAGACATTG+TGG - Chr3:79931328-79931347 None:intergenic 40.0%
! AAGAGATGTTCTAGGTGGAA+AGG + Chr3:79926670-79926689 MsG0380016166.01.T01:five_prime_UTR 40.0%
! AATCTGAACTCGGGTTTTTG+AGG - Chr3:79928003-79928022 None:intergenic 40.0%
! CAATTTGAGACAGTGCTTTC+TGG + Chr3:79931074-79931093 MsG0380016166.01.T01:intron 40.0%
! CCAATGATGGAAAAAGGCAT+TGG - Chr3:79927303-79927322 None:intergenic 40.0%
! CCAATGCCTTTTTCCATCAT+TGG + Chr3:79927300-79927319 MsG0380016166.01.T01:intron 40.0%
! CCTTTGAAGGTTGTTATTGC+TGG + Chr3:79925797-79925816 MsG0380016166.01.T01:five_prime_UTR 40.0%
! CGACATGTCAGTAACTTGTA+AGG + Chr3:79930921-79930940 MsG0380016166.01.T01:exon 40.0%
! CTTCACTAATCTGGTTTGCA+TGG + Chr3:79928413-79928432 MsG0380016166.01.T01:intron 40.0%
! GAAAATTCTGGGAAGAGTAC+AGG + Chr3:79932172-79932191 MsG0380016166.01.T01:intron 40.0%
! GGAGCATCATATCAACTTTG+AGG + Chr3:79932193-79932212 MsG0380016166.01.T01:intron 40.0%
! GGTTCCTTATTTCCAGAGAT+TGG + Chr3:79930087-79930106 MsG0380016166.01.T01:five_prime_UTR 40.0%
! TATCAACTTTGAGGACTTGG+GGG + Chr3:79932202-79932221 MsG0380016166.01.T01:intron 40.0%
! TGAGTCTTGTCTTCTAATGG+TGG + Chr3:79925943-79925962 MsG0380016166.01.T01:intron 40.0%
!! AAGGCATTGGACTTGATTGT+TGG - Chr3:79927290-79927309 None:intergenic 40.0%
!! AGAAGTGTCAGTGCTACAAA+GGG + Chr3:79926122-79926141 MsG0380016166.01.T01:intron 40.0%
!! CATCAGGGTTGATGAAGTTT+AGG - Chr3:79929469-79929488 None:intergenic 40.0%
!! GAATGGGATAGGGTTGTTTT+AGG + Chr3:79926154-79926173 MsG0380016166.01.T01:intron 40.0%
!! GTAATGGCAATTGATGATGG+TGG - Chr3:79925408-79925427 None:intergenic 40.0%
!! TCTAAGATGGCCTTTTTGGA+CGG + Chr3:79929748-79929767 MsG0380016166.01.T01:five_prime_UTR 40.0%
!! TTCTCATCAAAAGGAGTACC+TGG - Chr3:79926106-79926125 None:intergenic 40.0%
!!! ACCTTGGTGTTTTAACAACG+TGG - Chr3:79931404-79931423 None:intergenic 40.0%
!!! CGTTTTCTAAGATTGCTGCA+TGG + Chr3:79926963-79926982 MsG0380016166.01.T01:intron 40.0%
!!! TGGTTCTAAGATGGCCTTTT+TGG + Chr3:79929744-79929763 MsG0380016166.01.T01:five_prime_UTR 40.0%
AAACCAGCTCCAACATAGAC+TGG - Chr3:79931254-79931273 None:intergenic 45.0%
AAACCAGTCTATGTTGGAGC+TGG + Chr3:79931248-79931267 MsG0380016166.01.T01:CDS 45.0%
AAGTGTCAGTGCTACAAAGG+GGG + Chr3:79926124-79926143 MsG0380016166.01.T01:intron 45.0%
ACAAAGGGGGAAAGTGAGAA+TGG + Chr3:79926137-79926156 MsG0380016166.01.T01:intron 45.0%
ACTCAGTGGGACTAAAACCT+TGG - Chr3:79931420-79931439 None:intergenic 45.0%
AGATGGAGACTGGTATGAGA+CGG + Chr3:79926994-79927013 MsG0380016166.01.T01:five_prime_UTR 45.0%
AGCTTCTTCTTCCTGAGAAC+TGG + Chr3:79930059-79930078 MsG0380016166.01.T01:five_prime_UTR 45.0%
AGGAACAGTCGGATAAGAAC+AGG - Chr3:79926789-79926808 None:intergenic 45.0%
ATTAGGGTAAGCCCCAACTT+TGG - Chr3:79927639-79927658 None:intergenic 45.0%
ATTGGATGTGTGATGCAGCA+AGG - Chr3:79927335-79927354 None:intergenic 45.0%
CAAAGGGGGAAAGTGAGAAT+GGG + Chr3:79926138-79926157 MsG0380016166.01.T01:intron 45.0%
CAACCTTCAAAGGAGAACCA+TGG - Chr3:79925676-79925695 None:intergenic 45.0%
CAGCATTAACTCCAAAGAGC+CGG - Chr3:79926855-79926874 None:intergenic 45.0%
CAGGAATATGGGCAATCTTG+AGG + Chr3:79928528-79928547 MsG0380016166.01.T01:intron 45.0%
CGGAATGCAAAGAAGGAAAG+AGG - Chr3:79930805-79930824 None:intergenic 45.0%
CTCAAGATTGCCCATATTCC+TGG - Chr3:79928530-79928549 None:intergenic 45.0%
CTCGTTCTGCTAAGTGTAAC+AGG + Chr3:79925642-79925661 MsG0380016166.01.T01:five_prime_UTR 45.0%
CTGAACGTTGCAATGCTGTT+TGG + Chr3:79931185-79931204 MsG0380016166.01.T01:intron 45.0%
CTTCAGACACGAACACATGT+TGG + Chr3:79926077-79926096 MsG0380016166.01.T01:intron 45.0%
CTTCTTCCTGAGAACTGGAA+AGG + Chr3:79930064-79930083 MsG0380016166.01.T01:five_prime_UTR 45.0%
CTTGACTGGTGATATAGCCA+AGG - Chr3:79928738-79928757 None:intergenic 45.0%
CTTGGCTATATCACCAGTCA+AGG + Chr3:79928736-79928755 MsG0380016166.01.T01:intron 45.0%
GAAATCTGCGGTTGTGGTAT+AGG + Chr3:79930288-79930307 MsG0380016166.01.T01:intron 45.0%
GAACCATGGTTCTCCTTTGA+AGG + Chr3:79925670-79925689 MsG0380016166.01.T01:five_prime_UTR 45.0%
GACCATTGAGGCTACAACTT+TGG - Chr3:79931002-79931021 None:intergenic 45.0%
GATCTTTGTAAGGGACGACA+CGG - Chr3:79931573-79931592 None:intergenic 45.0%
GCACTGTCTCAAATTGATGC+AGG - Chr3:79931070-79931089 None:intergenic 45.0%
GCATACAAAGTCTTTCAGGG+GGG - Chr3:79929777-79929796 None:intergenic 45.0%
GCTGCATGGAAAGATGAAGA+TGG + Chr3:79926977-79926996 MsG0380016166.01.T01:five_prime_UTR 45.0%
GGAAAGATGAAGATGGAGAC+TGG + Chr3:79926984-79927003 MsG0380016166.01.T01:five_prime_UTR 45.0%
GGAATAATGAGATGCTGACC+TGG + Chr3:79928549-79928568 MsG0380016166.01.T01:five_prime_UTR 45.0%
GGCATACAAAGTCTTTCAGG+GGG - Chr3:79929778-79929797 None:intergenic 45.0%
GGGAAAGTGAGAATGGGATA+GGG + Chr3:79926144-79926163 MsG0380016166.01.T01:intron 45.0%
GTCCTTCCATCTCCGTTAAA+TGG + Chr3:79927776-79927795 MsG0380016166.01.T01:five_prime_UTR 45.0%
TAACGGAGATGGAAGGACTT+CGG - Chr3:79927774-79927793 None:intergenic 45.0%
TCACAAGCCTATATTGCTGG+AGG + Chr3:79926646-79926665 MsG0380016166.01.T01:five_prime_UTR 45.0%
TCAGTTTGTAAATGGAGGGG+AGG + Chr3:79928801-79928820 MsG0380016166.01.T01:intron 45.0%
TCTCTTGCCTCCAGCAATAT+AGG - Chr3:79926656-79926675 None:intergenic 45.0%
TCTTCCTGAGAACTGGAAAG+GGG + Chr3:79930066-79930085 MsG0380016166.01.T01:five_prime_UTR 45.0%
TGCCAAAGTTGTAGCCTCAA+TGG + Chr3:79930997-79931016 MsG0380016166.01.T01:intron 45.0%
TGCTATCCGGAATGCAAAGA+AGG - Chr3:79930812-79930831 None:intergenic 45.0%
TGGTCACAAGCCTATATTGC+TGG + Chr3:79926643-79926662 MsG0380016166.01.T01:five_prime_UTR 45.0%
TGTAGCCTCAATGGTCTCTA+GGG + Chr3:79931006-79931025 MsG0380016166.01.T01:intron 45.0%
TTAGGGTAAGCCCCAACTTT+GGG - Chr3:79927638-79927657 None:intergenic 45.0%
TTCTCCCACACTTGGAAGTA+AGG - Chr3:79929116-79929135 None:intergenic 45.0%
TTGAGGCTACAACTTTGGCA+TGG - Chr3:79930997-79931016 None:intergenic 45.0%
TTGTAGCCTCAATGGTCTCT+AGG + Chr3:79931005-79931024 MsG0380016166.01.T01:intron 45.0%
TTGTGCACAGGCTATTGTAC+AGG + Chr3:79931680-79931699 MsG0380016166.01.T01:CDS 45.0%
! AAGGTTGTTATTGCTGGTGC+AGG + Chr3:79925803-79925822 MsG0380016166.01.T01:five_prime_UTR 45.0%
! ACTAATCTGGTTTGCATGGC+TGG + Chr3:79928417-79928436 MsG0380016166.01.T01:intron 45.0%
! ACTGGTCTACAAGCACTGTT+AGG - Chr3:79927456-79927475 None:intergenic 45.0%
! AGCTCCAACATAGACTGGTT+TGG - Chr3:79931249-79931268 None:intergenic 45.0%
! CGAGAGCATACACTAGTAGA+AGG - Chr3:79927243-79927262 None:intergenic 45.0%
! GAAGTGTCAGTGCTACAAAG+GGG + Chr3:79926123-79926142 MsG0380016166.01.T01:intron 45.0%
! GCAAAGTATTTGGCAGATGC+TGG + Chr3:79926623-79926642 MsG0380016166.01.T01:five_prime_UTR 45.0%
! GTGTATGCTCTCGGTAGTTT+TGG + Chr3:79927250-79927269 MsG0380016166.01.T01:intron 45.0%
! TTTTTGCACCAGCCGAAGAA+TGG + Chr3:79931271-79931290 MsG0380016166.01.T01:CDS 45.0%
!! AGGTTTTAGTCCCACTGAGT+TGG + Chr3:79931420-79931439 MsG0380016166.01.T01:intron 45.0%
!! ATGGAAGGTGCTGTTCTTTC+TGG + Chr3:79931651-79931670 MsG0380016166.01.T01:CDS 45.0%
!! GAGAAGTGTCAGTGCTACAA+AGG + Chr3:79926121-79926140 MsG0380016166.01.T01:intron 45.0%
!! GCTCCAACATAGACTGGTTT+GGG - Chr3:79931248-79931267 None:intergenic 45.0%
!! GGAGAAGCATGGTTCTAAGA+TGG + Chr3:79929735-79929754 MsG0380016166.01.T01:intron 45.0%
!! TGGAAGGTGCTGTTCTTTCT+GGG + Chr3:79931652-79931671 MsG0380016166.01.T01:CDS 45.0%
AACGGAGATGGAAGGACTTC+GGG - Chr3:79927773-79927792 None:intergenic 50.0%
ACGAACACATGTTGGACACC+AGG + Chr3:79926085-79926104 MsG0380016166.01.T01:intron 50.0%
CGACACTGACACGTTGACAT+CGG + Chr3:79925996-79926015 MsG0380016166.01.T01:intron 50.0%
CGTGAAATCCATTCTTCGGC+TGG - Chr3:79931282-79931301 None:intergenic 50.0%
CTGGAGGCAAGAGATGTTCT+AGG + Chr3:79926662-79926681 MsG0380016166.01.T01:five_prime_UTR 50.0%
CTTCTTCCAGCTATGCTTGG+TGG + Chr3:79928599-79928618 MsG0380016166.01.T01:five_prime_UTR 50.0%
CTTGTAGACCAGTTAGCCCT+TGG + Chr3:79927463-79927482 MsG0380016166.01.T01:intron 50.0%
GATGGAGACTGGTATGAGAC+GGG + Chr3:79926995-79927014 MsG0380016166.01.T01:five_prime_UTR 50.0%
GCGTATGTTGAGGCTCAAGA+TGG + Chr3:79928626-79928645 MsG0380016166.01.T01:five_prime_UTR 50.0%
GGACGACACGGTTCACAATT+TGG - Chr3:79931561-79931580 None:intergenic 50.0%
GGACTTCTTCCAGCTATGCT+TGG + Chr3:79928596-79928615 MsG0380016166.01.T01:five_prime_UTR 50.0%
GGGGAAAGTGAGAATGGGAT+AGG + Chr3:79926143-79926162 MsG0380016166.01.T01:intron 50.0%
GTATCATCAAGCTCAGGACG+TGG - Chr3:79925713-79925732 None:intergenic 50.0%
GTGGTGTCTTTCGCAGCTTA+AGG - Chr3:79927164-79927183 None:intergenic 50.0%
GTTCAGGCGAAATCAACCCA+AGG - Chr3:79929291-79929310 None:intergenic 50.0%
TAAGCTGCGAAAGACACCAC+AGG + Chr3:79927164-79927183 MsG0380016166.01.T01:intron 50.0%
TACATGTGCCAAGGGCTAAC+TGG - Chr3:79927474-79927493 None:intergenic 50.0%
TGCTACCCTAGAGACCATTG+AGG - Chr3:79931014-79931033 None:intergenic 50.0%
TTGAAGCTTGGACAGAGCAC+AGG - Chr3:79927393-79927412 None:intergenic 50.0%
! ATTCGGAGCTACTTGCTGCT+CGG + Chr3:79932096-79932115 MsG0380016166.01.T01:CDS 50.0%
! CAAATTATCCCAGGACTGGC+TGG + Chr3:79926590-79926609 MsG0380016166.01.T01:intron 50.0%
! CTAAACTCTCCAGGCTTGCT+TGG - Chr3:79927737-79927756 None:intergenic 50.0%
! GAGGCAAGAGATGTTCTAGG+TGG + Chr3:79926665-79926684 MsG0380016166.01.T01:five_prime_UTR 50.0%
! TTCTGGGAAGCTTTGTGCAC+AGG + Chr3:79931668-79931687 MsG0380016166.01.T01:CDS 50.0%
! TTTGCTATGCCAAGCAAGCC+TGG + Chr3:79927725-79927744 MsG0380016166.01.T01:five_prime_UTR 50.0%
!! GTGCCTATGTGATGGGCATT+GGG + Chr3:79927972-79927991 MsG0380016166.01.T01:intron 50.0%
!! TGTGCCTATGTGATGGGCAT+TGG + Chr3:79927971-79927990 MsG0380016166.01.T01:intron 50.0%
AGGGGGGTTTCCGTCCAAAA+AGG - Chr3:79929761-79929780 None:intergenic 55.0%
CTGCCCAATGCCCATCACAT+AGG - Chr3:79927978-79927997 None:intergenic 55.0%
GCTTATGTGTCTGCAGCACC+AGG + Chr3:79929928-79929947 MsG0380016166.01.T01:five_prime_UTR 55.0%
GGAACCCCTTTCCAGTTCTC+AGG - Chr3:79930073-79930092 None:intergenic 55.0%
TTGACAAGCCAGCCAGTCCT+GGG - Chr3:79926601-79926620 None:intergenic 55.0%
! AAGATGGACTTCACCGCCCA+AGG - Chr3:79929821-79929840 None:intergenic 55.0%
! AGGACGAGGAGAAGCACGAA+AGG - Chr3:79925771-79925790 None:intergenic 55.0%
! TCCAGCTATGCTTGGTGGAC+AGG + Chr3:79928604-79928623 MsG0380016166.01.T01:five_prime_UTR 55.0%
! TGGTGGACAGGCGTATGTTG+AGG + Chr3:79928616-79928635 MsG0380016166.01.T01:five_prime_UTR 55.0%
! TTCGGAGCTACTTGCTGCTC+GGG + Chr3:79932097-79932116 MsG0380016166.01.T01:CDS 55.0%
CGACAGGCCATGACCTTGAC+TGG - Chr3:79928752-79928771 None:intergenic 60.0%
GCCTGTCCACCAAGCATAGC+TGG - Chr3:79928608-79928627 None:intergenic 60.0%
GTTGACAAGCCAGCCAGTCC+TGG - Chr3:79926602-79926621 None:intergenic 60.0%
! TCGGAGCTACTTGCTGCTCG+GGG + Chr3:79932098-79932117 MsG0380016166.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79925381 79932370 79925381 ID=MsG0380016167.01;
Chr3 mRNA 79925381 79932370 79925381 ID=MsG0380016167.01.T01;Parent=MsG0380016167.01
Chr3 exon 79925381 79925824 79925381 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79925554 79925824 79925554 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 CDS 79926603 79926691 79926603 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79926603 79926691 79926603 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79926974 79927031 79926974 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79926974 79927031 79926974 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79927642 79927797 79927642 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79927642 79927797 79927642 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79928531 79928679 79928531 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79928531 79928679 79928531 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79929416 79929535 79929416 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79929416 79929535 79929416 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79929736 79929949 79929736 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79929736 79929949 79929736 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79930047 79930149 79930047 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79930047 79930149 79930047 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79930628 79930675 79930628 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79930628 79930675 79930628 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79930897 79930942 79930897 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79930897 79930942 79930897 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79931234 79931421 79931234 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79931234 79931421 79931234 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79931539 79931701 79931539 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79931539 79931701 79931539 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3 CDS 79932095 79932154 79932095 ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3 exon 79932095 79932370 79932095 ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Gene Sequence

>MsG0380016167.01.T01

ATGAACTCATATACAACAATTTCATTATCATTTTCTAGTAGCGTTTCAATGGGTCTTAACTTGAGGTTCAATCTTGCTTCAGCTTCAACTCGTTCTGCTAAGTGTAACAGGTTAAGGAACCATGGTTCTCCTTTGAAGGTTGTTTGCATTGATTATCCACGTCCTGAGCTTGATGATACTGTTAATTTCATTGAAGCTTCTTACTTGTCTTCTACCTTTCGTGCTTCTCCTCGTCCTACTAAACCTTTGAAGGTTGTTATTGCTGGTGCAGGACTGGCTGGCTTGTCAACTGCAAAGTATTTGGCAGATGCTGGTCACAAGCCTATATTGCTGGAGGCAAGAGATGTTCTAGGTGGAAAGATTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACGGGCCTACATATATTCTTTGGGGCTTACCCTAATGTGCAGAACCTATTTGGAGAACTCGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGAAGTCCTTCCATCTCCGTTAAATGGAATATGGGCAATCTTGAGGAATAATGAGATGCTGACCTGGCCAGAGAAAATCAAATTTGCAATTGGACTTCTTCCAGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTATTTCTGTCAAAGAATGGATGAGAAAACAGGGCATTCCTGAACGTGTAACTGATGAAGTGTTCATAGCAATGTCAAAGGCCCTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATTTTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGACGGAAACCCCCCTGAAAGACTTTGTATGCCAATTGTTGATCATATTAAGTCCTTGGGCGGTGAAGTCCATCTTAATTCACGCATTAAAAATATTGAGCTAAACGATGATAACACAGTGAAAAGCTTTTTACTAACTAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTCTGCAGCACCAGTGGATATTCTGAAGCTTCTTCTTCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACGTATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTAAGTGTATATGCCGACATGTCAGTAACTTGTAAGGAATACTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGAAGATATTATCGGTGCCACAATGTCTGAACTTGCCAAACTCTTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCAAAAATCATCAAGTACCACGTTGTTAAAACACCAAGGTCAGTTTACAAAACTGTTCCAAATTGTGAACCGTGTCGTCCCTTACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCTATGGAAGGTGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCGGAGCTACTTGCTGCTCGGGGTCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA

Protein sequence

>MsG0380016167.01.T01

MNSYTTISLSFSSSVSMGLNLRFNLASASTRSAKCNRLRNHGSPLKVVCIDYPRPELDDTVNFIEASYLSSTFRASPRPTKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQAYVEAQDGISVKEWMRKQGIPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIKSLGGEVHLNSRIKNIELNDDNTVKSFLLTNGKVIEGDAYVSAAPVDILKLLLPENWKGVPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIGATMSELAKLFPDEISADQSKAKIIKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLAARGQKRIAQASTV*