AlfalfaGEDB | MsG0380016167.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016167.01

KEGG: K02293
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016167.01.T01	XP_024633627.1	98.375	554	9	0	1	554	29	582	0	1132

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016167.01.T01	P28553	88.427	553	56	2	2	554	26	570	0	1021

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016167.01.T01	A0A396IX01	98.375	554	9	0	1	554	29	582	0.0	1132

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047989.01	MsG0380016167.01	0.823685	1.212628e-53	1.051549e-50
MsG0080048068.01	MsG0380016167.01	0.805253	1.459312e-49	7.683673e-47
MsG0080048085.01	MsG0380016167.01	0.810051	1.396881e-50	8.335311e-48
MsG0080048273.01	MsG0380016167.01	0.801719	7.886556e-49	3.793012e-46
MsG0080048528.01	MsG0380016167.01	0.853253	2.700923e-61	5.799791e-58
MsG0080048748.01	MsG0380016167.01	0.834560	2.792609e-56	3.326399e-53
MsG0080048780.01	MsG0380016167.01	0.807547	4.792983e-50	2.677121e-47
MsG0080048801.01	MsG0380016167.01	0.857613	1.448337e-62	3.595994e-59
MsG0080048820.01	MsG0380016167.01	0.885143	1.048538e-71	7.114516e-68
MsG0080048845.01	MsG0380016167.01	0.879423	1.261050e-69	6.833608e-66

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PPI

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Gene1	Gene2	Type
MsG0180004504.01	MsG0380016167.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016167.01.T01	MTR_3g084830	98.187	386	7	0	1	386	29	414	0.0	788
MsG0380016167.01.T01	MTR_3g084850	98.592	142	2	0	413	554	1	142	6.13e-97	291
MsG0380016167.01.T01	MTR_3g084850	100.000	123	0	0	413	535	1	123	1.09e-84	259
MsG0380016167.01.T01	MTR_1g081290	30.943	530	327	10	54	551	41	563	8.00e-76	251
MsG0380016167.01.T01	MTR_1g081290	30.285	492	304	10	54	513	41	525	1.25e-66	226
MsG0380016167.01.T01	MTR_1g081290	30.049	406	251	8	54	428	41	444	1.97e-50	180
MsG0380016167.01.T01	MTR_6g040280	77.273	66	9	1	192	257	32	91	6.55e-27	106
MsG0380016167.01.T01	MTR_5g042243	92.000	50	4	0	192	241	40	89	9.85e-26	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016167.01.T01	AT4G14210	84.095	547	82	2	8	553	21	563	0.0	968
MsG0380016167.01.T01	AT4G14210	84.095	547	82	2	8	553	21	563	0.0	968
MsG0380016167.01.T01	AT4G14210	84.095	547	82	2	8	553	21	563	0.0	968
MsG0380016167.01.T01	AT3G04870	30.467	535	333	10	52	554	24	551	1.88e-74	247
MsG0380016167.01.T01	AT3G04870	30.467	535	333	10	52	554	24	551	1.88e-74	247
MsG0380016167.01.T01	AT3G04870	30.467	535	333	10	52	554	24	551	1.88e-74	247
MsG0380016167.01.T01	AT3G04870	30.467	535	333	10	52	554	24	551	1.88e-74	247

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Find 17 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTGATAAAGTGACTCAAA+TGG	0.498942	3:-79932245	None:intergenic
ACAAGATTTGAAGAAAATTC+TGG	0.216400	3:+79932160	MsG0380016166.01.T01:intron
AGGGCTCACATTTCATGTAT+TGG	0.386920	3:-79932349	None:intergenic
AGGTTCCCGACAAATATTTA+GGG	0.393381	3:+79932279	MsG0380016166.01.T01:intron
ATATCAACTTTGAGGACTTG+GGG	0.555063	3:+79932201	MsG0380016166.01.T01:intron
ATTCGGAGCTACTTGCTGCT+CGG	0.494416	3:+79932096	MsG0380016166.01.T01:CDS
CAAGATTTGAAGAAAATTCT+GGG	0.434521	3:+79932161	MsG0380016166.01.T01:intron
CAGGTTCCCGACAAATATTT+AGG	0.277509	3:+79932278	MsG0380016166.01.T01:intron
CATATCAACTTTGAGGACTT+GGG	0.460746	3:+79932200	MsG0380016166.01.T01:intron
CCGACAAATATTTAGGGAAA+AGG	0.396111	3:+79932285	MsG0380016166.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATTACAACCAGTCAA+AGG	-	Chr3:79930355-79930374	None:intergenic	30.0%
AAAGAAATAATCCAACTCAG+TGG	-	Chr3:79931434-79931453	None:intergenic	30.0%
AAGAAATAATCCAACTCAGT+GGG	-	Chr3:79931433-79931452	None:intergenic	30.0%
AAGTATATTACTGCTTCAGT+TGG	-	Chr3:79930457-79930476	None:intergenic	30.0%
AATGGAAAAAGGTTTACTGA+AGG	-	Chr3:79927097-79927116	None:intergenic	30.0%
AATGTCAAAACCAGGAATAT+GGG	+	Chr3:79928517-79928536	MsG0380016166.01.T01:intron	30.0%
ATAGAAGGTTTCTATTTAGC+TGG	+	Chr3:79931597-79931616	MsG0380016166.01.T01:CDS	30.0%
ATATGAGTTCATAGAAGAAG+AGG	-	Chr3:79925546-79925565	None:intergenic	30.0%
ATGTGTTCTTTATGCATGAA+AGG	+	Chr3:79926180-79926199	MsG0380016166.01.T01:intron	30.0%
ATTGCATTGAAAGTTCATCA+GGG	-	Chr3:79929484-79929503	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	79925381	79932370	79925381	ID=MsG0380016167.01;
Chr3	mRNA	79925381	79932370	79925381	ID=MsG0380016167.01.T01;Parent=MsG0380016167.01
Chr3	exon	79925381	79925824	79925381	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79925554	79925824	79925554	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	CDS	79926603	79926691	79926603	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79926603	79926691	79926603	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79926974	79927031	79926974	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79926974	79927031	79926974	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79927642	79927797	79927642	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79927642	79927797	79927642	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79928531	79928679	79928531	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79928531	79928679	79928531	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79929416	79929535	79929416	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79929416	79929535	79929416	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79929736	79929949	79929736	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79929736	79929949	79929736	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79930047	79930149	79930047	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79930047	79930149	79930047	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79930628	79930675	79930628	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79930628	79930675	79930628	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79930897	79930942	79930897	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79930897	79930942	79930897	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79931234	79931421	79931234	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79931234	79931421	79931234	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79931539	79931701	79931539	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79931539	79931701	79931539	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01
Chr3	CDS	79932095	79932154	79932095	ID=MsG0380016167.01.T01.cds;Parent=MsG0380016167.01.T01
Chr3	exon	79932095	79932370	79932095	ID=MsG0380016167.01.T01.exon;Parent=MsG0380016167.01.T01

Gene Sequence

>MsG0380016167.01.T01

ATGAACTCATATACAACAATTTCATTATCATTTTCTAGTAGCGTTTCAATGGGTCTTAACTTGAGGTTCAATCTTGCTTCAGCTTCAACTCGTTCTGCTAAGTGTAACAGGTTAAGGAACCATGGTTCTCCTTTGAAGGTTGTTTGCATTGATTATCCACGTCCTGAGCTTGATGATACTGTTAATTTCATTGAAGCTTCTTACTTGTCTTCTACCTTTCGTGCTTCTCCTCGTCCTACTAAACCTTTGAAGGTTGTTATTGCTGGTGCAGGACTGGCTGGCTTGTCAACTGCAAAGTATTTGGCAGATGCTGGTCACAAGCCTATATTGCTGGAGGCAAGAGATGTTCTAGGTGGAAAGATTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACGGGCCTACATATATTCTTTGGGGCTTACCCTAATGTGCAGAACCTATTTGGAGAACTCGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGAAGTCCTTCCATCTCCGTTAAATGGAATATGGGCAATCTTGAGGAATAATGAGATGCTGACCTGGCCAGAGAAAATCAAATTTGCAATTGGACTTCTTCCAGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTATTTCTGTCAAAGAATGGATGAGAAAACAGGGCATTCCTGAACGTGTAACTGATGAAGTGTTCATAGCAATGTCAAAGGCCCTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATTTTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGACGGAAACCCCCCTGAAAGACTTTGTATGCCAATTGTTGATCATATTAAGTCCTTGGGCGGTGAAGTCCATCTTAATTCACGCATTAAAAATATTGAGCTAAACGATGATAACACAGTGAAAAGCTTTTTACTAACTAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTCTGCAGCACCAGTGGATATTCTGAAGCTTCTTCTTCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACGTATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTAAGTGTATATGCCGACATGTCAGTAACTTGTAAGGAATACTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGAAGATATTATCGGTGCCACAATGTCTGAACTTGCCAAACTCTTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCAAAAATCATCAAGTACCACGTTGTTAAAACACCAAGGTCAGTTTACAAAACTGTTCCAAATTGTGAACCGTGTCGTCCCTTACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCTATGGAAGGTGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCGGAGCTACTTGCTGCTCGGGGTCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA

Protein sequence

>MsG0380016167.01.T01

MNSYTTISLSFSSSVSMGLNLRFNLASASTRSAKCNRLRNHGSPLKVVCIDYPRPELDDTVNFIEASYLSSTFRASPRPTKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQAYVEAQDGISVKEWMRKQGIPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIKSLGGEVHLNSRIKNIELNDDNTVKSFLLTNGKVIEGDAYVSAAPVDILKLLLPENWKGVPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIGATMSELAKLFPDEISADQSKAKIIKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLAARGQKRIAQASTV*