Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033081.01.T01 | RHN47856.1 | 60.571 | 175 | 43 | 2 | 1 | 175 | 313 | 461 | 2.97E-55 | 191 |
| MsG0680033081.01.T02 | RHN47856.1 | 60.571 | 175 | 43 | 2 | 1 | 175 | 313 | 461 | 2.97E-55 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033081.01.T01 | O65628 | 37.572 | 173 | 82 | 3 | 1 | 173 | 310 | 456 | 2.66E-27 | 109 |
| MsG0680033081.01.T02 | O65628 | 37.572 | 173 | 82 | 3 | 1 | 173 | 310 | 456 | 2.66E-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033081.01.T01 | A0A396H3F9 | 60.571 | 175 | 43 | 2 | 1 | 175 | 313 | 461 | 1.42e-55 | 191 |
| MsG0680033081.01.T02 | A0A396H3F9 | 60.571 | 175 | 43 | 2 | 1 | 175 | 313 | 461 | 1.42e-55 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0680033081.01 | 0.808404 | 3.148819e-50 | 1.798888e-47 |
| MsG0080049032.01 | MsG0680033081.01 | 0.805974 | 1.030347e-49 | 5.526721e-47 |
| MsG0180000470.01 | MsG0680033081.01 | 0.810407 | 1.170816e-50 | 7.051377e-48 |
| MsG0180002952.01 | MsG0680033081.01 | 0.804177 | 2.448540e-49 | 1.254009e-46 |
| MsG0180003686.01 | MsG0680033081.01 | 0.802653 | 5.065016e-49 | 2.494678e-46 |
| MsG0180004465.01 | MsG0680033081.01 | 0.812496 | 4.118224e-51 | 2.622476e-48 |
| MsG0180004943.01 | MsG0680033081.01 | 0.809770 | 1.605464e-50 | 9.510190e-48 |
| MsG0180005250.01 | MsG0680033081.01 | 0.848096 | 7.620967e-60 | 1.382975e-56 |
| MsG0180005445.01 | MsG0680033081.01 | 0.805254 | 1.458709e-49 | 7.680653e-47 |
| MsG0180005842.01 | MsG0680033081.01 | 0.808235 | 3.421003e-50 | 1.945718e-47 |
| MsG0280006299.01 | MsG0680033081.01 | 0.809797 | 1.584561e-50 | 9.392702e-48 |
| MsG0280010698.01 | MsG0680033081.01 | 0.809115 | 2.219388e-50 | 1.291913e-47 |
| MsG0280010778.01 | MsG0680033081.01 | 0.805492 | 1.300384e-49 | 6.889291e-47 |
| MsG0280011472.01 | MsG0680033081.01 | 0.805967 | 1.033495e-49 | 5.542764e-47 |
| MsG0380012460.01 | MsG0680033081.01 | 0.828559 | 8.404979e-55 | 8.383835e-52 |
| MsG0380013176.01 | MsG0680033081.01 | 0.805957 | 1.038674e-49 | 5.569082e-47 |
| MsG0380013363.01 | MsG0680033081.01 | 0.810013 | 1.423460e-50 | 8.485844e-48 |
| MsG0380014537.01 | MsG0680033081.01 | 0.818186 | 2.235612e-52 | 1.661851e-49 |
| MsG0680031214.01 | MsG0680033081.01 | 0.836788 | 7.620257e-57 | 9.705398e-54 |
| MsG0680033081.01 | MsG0680035123.01 | 0.800351 | 1.500875e-48 | 6.973291e-46 |
| MsG0680033081.01 | MsG0780038401.01 | 0.826678 | 2.378153e-54 | 2.245576e-51 |
| MsG0680033081.01 | MsG0780039171.01 | 0.809614 | 1.734543e-50 | 1.023263e-47 |
| MsG0680033081.01 | MsG0780039243.01 | 0.802736 | 4.868770e-49 | 2.403253e-46 |
| MsG0680033081.01 | MsG0780040057.01 | 0.820038 | 8.468696e-53 | 6.627519e-50 |
| MsG0680033081.01 | MsG0780040262.01 | 0.821757 | 3.406866e-53 | 2.796612e-50 |
| MsG0680033081.01 | MsG0780040704.01 | 0.818291 | 2.116614e-52 | 1.577908e-49 |
| MsG0680033081.01 | MsG0880043479.01 | 0.803315 | 3.696607e-49 | 1.851700e-46 |
| MsG0680033081.01 | MsG0880043509.01 | 0.805073 | 1.591883e-49 | 8.343402e-47 |
| MsG0680033081.01 | MsG0880044574.01 | 0.802471 | 5.523359e-49 | 2.707882e-46 |
| MsG0680033081.01 | MsG0880045111.01 | 0.812997 | 3.198394e-51 | 2.063863e-48 |
| MsG0680033081.01 | MsG0880045736.01 | 0.808261 | 3.378955e-50 | 1.923116e-47 |
| MsG0680033081.01 | MsG0880045937.01 | 0.833148 | 6.297706e-56 | 7.190368e-53 |
| MsG0680033081.01 | MsG0880046020.01 | 0.813317 | 2.720818e-51 | 1.770976e-48 |
| MsG0480021215.01 | MsG0680033081.01 | 0.825766 | 3.920187e-54 | 3.606821e-51 |
| MsG0480021465.01 | MsG0680033081.01 | 0.815632 | 8.369502e-52 | 5.801574e-49 |
| MsG0480021536.01 | MsG0680033081.01 | 0.812498 | 4.113003e-51 | 2.619314e-48 |
| MsG0480023600.01 | MsG0680033081.01 | 0.803916 | 2.774293e-49 | 1.411472e-46 |
| MsG0480023835.01 | MsG0680033081.01 | 0.807932 | 3.970191e-50 | 2.239901e-47 |
| MsG0480023873.01 | MsG0680033081.01 | 0.811969 | 5.365987e-51 | 3.368685e-48 |
| MsG0580024552.01 | MsG0680033081.01 | 0.802579 | 5.247050e-49 | 2.579460e-46 |
| MsG0380017375.01 | MsG0680033081.01 | 0.813908 | 2.016797e-51 | 1.333917e-48 |
| MsG0380017589.01 | MsG0680033081.01 | 0.805056 | 1.604660e-49 | 8.406849e-47 |
| MsG0480018163.01 | MsG0680033081.01 | 0.815730 | 7.957936e-52 | 5.531190e-49 |
| MsG0580027947.01 | MsG0680033081.01 | 0.803882 | 2.820145e-49 | 1.433499e-46 |
| MsG0280006491.01 | MsG0680033081.01 | 0.826439 | 2.711856e-54 | 2.543330e-51 |
| MsG0280007529.01 | MsG0680033081.01 | 0.816808 | 4.569117e-52 | 3.270470e-49 |
| MsG0280008377.01 | MsG0680033081.01 | 0.802777 | 4.776261e-49 | 2.360049e-46 |
| MsG0280010443.01 | MsG0680033081.01 | 0.801496 | 8.762274e-49 | 4.190707e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033081.01.T01 | MTR_7g091500 | 61.714 | 175 | 41 | 3 | 1 | 175 | 310 | 458 | 3.96e-59 | 191 |
| MsG0680033081.01.T02 | MTR_7g091500 | 61.714 | 175 | 41 | 3 | 1 | 175 | 310 | 458 | 3.96e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033081.01.T01 | AT4G35910 | 37.572 | 173 | 82 | 3 | 1 | 173 | 310 | 456 | 2.72e-28 | 109 |
| MsG0680033081.01.T02 | AT4G35910 | 37.572 | 173 | 82 | 3 | 1 | 173 | 310 | 456 | 2.72e-28 | 109 |
Find 22 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCTGTGAGAGTATTTA+AGG | 0.114882 | 6:+55970211 | MsG0680033081.01.T01:intron |
| AGAGTAGTTATTTGCAATTT+AGG | 0.197365 | 6:+55970296 | MsG0680033081.01.T01:three_prime_UTR |
| TCCTGGTTGTGGTAAATTTA+CGG | 0.276660 | 6:+55970027 | MsG0680033081.01.T01:three_prime_UTR |
| ACATTTGTGAGAGTATTTAA+AGG | 0.283407 | 6:+55970149 | MsG0680033081.01.T01:intron |
| TTATGAGAAGGTGTTGCTTT+TGG | 0.302591 | 6:+55970060 | MsG0680033081.01.T01:three_prime_UTR |
| ACACTGAGATTCTCAGTAAA+GGG | 0.400133 | 6:+55969999 | MsG0680033081.01.T01:three_prime_UTR |
| ATGAAGCATGTATTCTAGAT+TGG | 0.448279 | 6:+55970367 | MsG0680033081.01.T01:three_prime_UTR |
| TGGAGTTAACCACTTAGATA+TGG | 0.463595 | 6:+55970105 | MsG0680033081.01.T01:three_prime_UTR |
| CTCAGTAAAGGGGCAAATCC+TGG | 0.465806 | 6:+55970010 | MsG0680033081.01.T01:three_prime_UTR |
| TCATGCAATATCAAGAGTTA+TGG | 0.489468 | 6:+55970085 | MsG0680033081.01.T01:three_prime_UTR |
| CAAGATTGCTTGCTTTCAGA+TGG | 0.509712 | 6:+55969948 | MsG0680033081.01.T01:CDS |
| TACACTGAGATTCTCAGTAA+AGG | 0.510030 | 6:+55969998 | MsG0680033081.01.T01:three_prime_UTR |
| AACTACTCTCTTCATTGTCG+TGG | 0.555301 | 6:-55970282 | None:intergenic |
| AAAGGGGCAAATCCTGGTTG+TGG | 0.603416 | 6:+55970016 | MsG0680033081.01.T01:three_prime_UTR |
| GGTTTGACTGACTTATGAGA+AGG | 0.603735 | 6:+55970048 | MsG0680033081.01.T01:three_prime_UTR |
| TCAACACCACCATATCTAAG+TGG | 0.612253 | 6:-55970114 | None:intergenic |
| ACCGTAAATTTACCACAACC+AGG | 0.624926 | 6:-55970028 | None:intergenic |
| ATAACTCTTGATATTGCATG+AGG | 0.626773 | 6:-55970083 | None:intergenic |
| CACTGAGATTCTCAGTAAAG+GGG | 0.636302 | 6:+55970000 | MsG0680033081.01.T01:three_prime_UTR |
| TTTACTGAGAATCTCAGTGT+AGG | 0.639224 | 6:-55969996 | None:intergenic |
| AGTTAACCACTTAGATATGG+TGG | 0.640695 | 6:+55970108 | MsG0680033081.01.T01:three_prime_UTR |
| GCAGACATGAAACAACGACA+AGG | 0.754505 | 6:-55970342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCAAATTTAGTAATAACT+CGG | + | Chr6:55969427-55969446 | MsG0680033081.01.T01:intron | 15.0% |
| !!! | TAATGTTTTTTGTTTAGATA+TGG | + | Chr6:55970173-55970192 | MsG0680033081.01.T01:intron | 15.0% |
| !! | TAAAAGAAAACAGATTGAAT+TGG | - | Chr6:55969502-55969521 | None:intergenic | 20.0% |
| !! | TATAATAAAAGATTCCATGA+AGG | - | Chr6:55969476-55969495 | None:intergenic | 20.0% |
| !!! | AATTCAATCTGTTTTCTTTT+AGG | + | Chr6:55969501-55969520 | MsG0680033081.01.T01:intron | 20.0% |
| !!! | ATCAAATAGATCATTTTGAT+AGG | + | Chr6:55969607-55969626 | MsG0680033081.01.T01:intron | 20.0% |
| !!! | ATCAATGGAGAAATTTTATA+CGG | + | Chr6:55969299-55969318 | MsG0680033081.01.T01:CDS | 20.0% |
| !!! | GAAATTTGAATAATCTGTTT+TGG | + | Chr6:55969565-55969584 | MsG0680033081.01.T01:intron | 20.0% |
| !!! | TTTTGAGATTATATCTCTTT+TGG | - | Chr6:55969115-55969134 | None:intergenic | 20.0% |
| ! | AATGTGTCATACCAAAAAAT+AGG | - | Chr6:55969870-55969889 | None:intergenic | 25.0% |
| ! | AGAGTAGTTATTTGCAATTT+AGG | + | Chr6:55970296-55970315 | MsG0680033081.01.T01:three_prime_UTR | 25.0% |
| ! | ATAAAATTTCTCCATTGATG+TGG | - | Chr6:55969298-55969317 | None:intergenic | 25.0% |
| !! | TTATTCCTTTTCAATTCAAC+AGG | + | Chr6:55969042-55969061 | MsG0680033081.01.T01:CDS | 25.0% |
| !!! | ACATTTGTGAGAGTATTTAA+AGG | + | Chr6:55970149-55970168 | MsG0680033081.01.T01:intron | 25.0% |
| !!! | ATGTGTTTTTTCATGTGTTT+AGG | + | Chr6:55969709-55969728 | MsG0680033081.01.T01:intron | 25.0% |
| !!! | TAATGTTTTTTGTTCTGCAT+TGG | + | Chr6:55970235-55970254 | MsG0680033081.01.T01:three_prime_UTR | 25.0% |
| ATAACTCTTGATATTGCATG+AGG | - | Chr6:55970086-55970105 | None:intergenic | 30.0% | |
| ATGAAAAAACACATTTACCG+CGG | - | Chr6:55969703-55969722 | None:intergenic | 30.0% | |
| ATGAAGCATGTATTCTAGAT+TGG | + | Chr6:55970367-55970386 | MsG0680033081.01.T01:three_prime_UTR | 30.0% | |
| TCATGCAATATCAAGAGTTA+TGG | + | Chr6:55970085-55970104 | MsG0680033081.01.T01:three_prime_UTR | 30.0% | |
| TGAAGTTTCACTACAAGAAA+TGG | - | Chr6:55969647-55969666 | None:intergenic | 30.0% | |
| ! | ATGATCGATTTATTGTGACT+TGG | + | Chr6:55969809-55969828 | MsG0680033081.01.T01:intron | 30.0% |
| ! | TGATCGATTTATTGTGACTT+GGG | + | Chr6:55969810-55969829 | MsG0680033081.01.T01:intron | 30.0% |
| ! | TTCATTAAGATCTTCTAGCT+GGG | + | Chr6:55969663-55969682 | MsG0680033081.01.T01:CDS | 30.0% |
| !! | AACATCTGTGAGAGTATTTA+AGG | + | Chr6:55970211-55970230 | MsG0680033081.01.T01:intron | 30.0% |
| !! | CGACACGTAAAATTTGTTTT+TGG | - | Chr6:55969902-55969921 | None:intergenic | 30.0% |
| !!! | GAAAGAGTCTACCTATTTTT+TGG | + | Chr6:55969856-55969875 | MsG0680033081.01.T01:intron | 30.0% |
| !!! | TCTGCATTGGTTGTATTTTA+TGG | + | Chr6:55970248-55970267 | MsG0680033081.01.T01:three_prime_UTR | 30.0% |
| !!! | TGTCGATATTCTTGTTTTCA+GGG | + | Chr6:55969917-55969936 | MsG0680033081.01.T01:intron | 30.0% |
| AACATTACCATCAACGATCT+CGG | - | Chr6:55969072-55969091 | None:intergenic | 35.0% | |
| AATTGTGCTCCTACTAAAGA+AGG | - | Chr6:55969780-55969799 | None:intergenic | 35.0% | |
| ACACTGAGATTCTCAGTAAA+GGG | + | Chr6:55969999-55970018 | MsG0680033081.01.T01:three_prime_UTR | 35.0% | |
| AGTTAACCACTTAGATATGG+TGG | + | Chr6:55970108-55970127 | MsG0680033081.01.T01:three_prime_UTR | 35.0% | |
| ATGGCAATTTGAATGCGTTA+AGG | + | Chr6:55969364-55969383 | MsG0680033081.01.T01:CDS | 35.0% | |
| ATTGTGCTCCTACTAAAGAA+GGG | - | Chr6:55969779-55969798 | None:intergenic | 35.0% | |
| CAATTTGAATGCGTTAAGGT+GGG | + | Chr6:55969368-55969387 | MsG0680033081.01.T01:CDS | 35.0% | |
| CCAAAAGTGAGATTGTTGAT+TGG | + | Chr6:55969189-55969208 | MsG0680033081.01.T01:CDS | 35.0% | |
| CTTCATTAAGATCTTCTAGC+TGG | + | Chr6:55969662-55969681 | MsG0680033081.01.T01:CDS | 35.0% | |
| GGAATCCTGTTGAATTGAAA+AGG | - | Chr6:55969050-55969069 | None:intergenic | 35.0% | |
| TACACTGAGATTCTCAGTAA+AGG | + | Chr6:55969998-55970017 | MsG0680033081.01.T01:three_prime_UTR | 35.0% | |
| TCCTGGTTGTGGTAAATTTA+CGG | + | Chr6:55970027-55970046 | MsG0680033081.01.T01:three_prime_UTR | 35.0% | |
| TGGAGTTAACCACTTAGATA+TGG | + | Chr6:55970105-55970124 | MsG0680033081.01.T01:three_prime_UTR | 35.0% | |
| TTGAGTGATGGTAAGAAACT+AGG | + | Chr6:55969535-55969554 | MsG0680033081.01.T01:intron | 35.0% | |
| TTTACTGAGAATCTCAGTGT+AGG | - | Chr6:55969999-55970018 | None:intergenic | 35.0% | |
| ! | CCAATCAACAATCTCACTTT+TGG | - | Chr6:55969192-55969211 | None:intergenic | 35.0% |
| ! | TCAAATTGCCATTGTTGACT+CGG | - | Chr6:55969356-55969375 | None:intergenic | 35.0% |
| ! | TTCTGAGGAAACAGATTCAT+TGG | - | Chr6:55969138-55969157 | None:intergenic | 35.0% |
| ! | TTCTTTTGCCCTTCTTTAGT+AGG | + | Chr6:55969768-55969787 | MsG0680033081.01.T01:intron | 35.0% |
| !!! | GTGTCGATATTCTTGTTTTC+AGG | + | Chr6:55969916-55969935 | MsG0680033081.01.T01:intron | 35.0% |
| !!! | TTATGAGAAGGTGTTGCTTT+TGG | + | Chr6:55970060-55970079 | MsG0680033081.01.T01:three_prime_UTR | 35.0% |
| AACTACTCTCTTCATTGTCG+TGG | - | Chr6:55970285-55970304 | None:intergenic | 40.0% | |
| ACATTACCATCAACGATCTC+GGG | - | Chr6:55969071-55969090 | None:intergenic | 40.0% | |
| ACCGTAAATTTACCACAACC+AGG | - | Chr6:55970031-55970050 | None:intergenic | 40.0% | |
| AGAAGGGCAAAAGAACATCA+TGG | - | Chr6:55969763-55969782 | None:intergenic | 40.0% | |
| AGCACAATTGTAAGAACAGC+TGG | + | Chr6:55969014-55969033 | MsG0680033081.01.T01:CDS | 40.0% | |
| ATAACTCGGTCTAAGCCAAT+TGG | + | Chr6:55969441-55969460 | MsG0680033081.01.T01:intron | 40.0% | |
| CAAGATTGCTTGCTTTCAGA+TGG | + | Chr6:55969948-55969967 | MsG0680033081.01.T01:CDS | 40.0% | |
| CACTGAGATTCTCAGTAAAG+GGG | + | Chr6:55970000-55970019 | MsG0680033081.01.T01:three_prime_UTR | 40.0% | |
| GCAATTTGAATGCGTTAAGG+TGG | + | Chr6:55969367-55969386 | MsG0680033081.01.T01:CDS | 40.0% | |
| GCACAATTGTAAGAACAGCT+GGG | + | Chr6:55969015-55969034 | MsG0680033081.01.T01:CDS | 40.0% | |
| TACGGATTTACCTCATTCAG+TGG | + | Chr6:55969317-55969336 | MsG0680033081.01.T01:CDS | 40.0% | |
| TCAACACCACCATATCTAAG+TGG | - | Chr6:55970117-55970136 | None:intergenic | 40.0% | |
| TTCACTACAAGAAATGGCCA+TGG | - | Chr6:55969641-55969660 | None:intergenic | 40.0% | |
| TTCCACAGATACCACATCAA+TGG | + | Chr6:55969284-55969303 | MsG0680033081.01.T01:CDS | 40.0% | |
| TTTACCGCGGAAAAAATGCA+AGG | - | Chr6:55969690-55969709 | None:intergenic | 40.0% | |
| ! | GGTTTGACTGACTTATGAGA+AGG | + | Chr6:55970048-55970067 | MsG0680033081.01.T01:three_prime_UTR | 40.0% |
| ! | TTAGTAGGAGCACAATTGCT+TGG | + | Chr6:55969783-55969802 | MsG0680033081.01.T01:intron | 40.0% |
| !! | ACAATCTCACTTTTGGCAAG+TGG | - | Chr6:55969185-55969204 | None:intergenic | 40.0% |
| !! | CGTTGATGGTAATGTTCCAT+TGG | + | Chr6:55969076-55969095 | MsG0680033081.01.T01:CDS | 40.0% |
| !! | GTAACTTTGCTGTTGAGTGA+TGG | + | Chr6:55969523-55969542 | MsG0680033081.01.T01:intron | 40.0% |
| AAGAAATGGCCATGGTCTCA+AGG | - | Chr6:55969633-55969652 | None:intergenic | 45.0% | |
| ACAATTGTGCTCTCTCGAGA+CGG | - | Chr6:55969005-55969024 | None:intergenic | 45.0% | |
| CTCCATTGATGTGGTATCTG+TGG | - | Chr6:55969289-55969308 | None:intergenic | 45.0% | |
| GAGAGGACAGAAAGATTCTG+AGG | - | Chr6:55969153-55969172 | None:intergenic | 45.0% | |
| GCAGACATGAAACAACGACA+AGG | - | Chr6:55970345-55970364 | None:intergenic | 45.0% | |
| GTCTAAGCCAATTGGCAACT+GGG | + | Chr6:55969449-55969468 | MsG0680033081.01.T01:intron | 45.0% | |
| TACCTCATTCAGTGGTTGCA+CGG | + | Chr6:55969325-55969344 | MsG0680033081.01.T01:CDS | 45.0% | |
| TTTGATAGGCCTTGAGACCA+TGG | + | Chr6:55969621-55969640 | MsG0680033081.01.T01:intron | 45.0% | |
| AAAGGGGCAAATCCTGGTTG+TGG | + | Chr6:55970016-55970035 | MsG0680033081.01.T01:three_prime_UTR | 50.0% | |
| ACCTCATTCAGTGGTTGCAC+GGG | + | Chr6:55969326-55969345 | MsG0680033081.01.T01:CDS | 50.0% | |
| AGGATTCCCGAGATCGTTGA+TGG | + | Chr6:55969062-55969081 | MsG0680033081.01.T01:CDS | 50.0% | |
| ATTGGCAACTGGGTCCTTCA+TGG | + | Chr6:55969459-55969478 | MsG0680033081.01.T01:intron | 50.0% | |
| CTCAGTAAAGGGGCAAATCC+TGG | + | Chr6:55970010-55970029 | MsG0680033081.01.T01:three_prime_UTR | 50.0% | |
| GGTCTAAGCCAATTGGCAAC+TGG | + | Chr6:55969448-55969467 | MsG0680033081.01.T01:intron | 50.0% | |
| TGAAGGACCCAGTTGCCAAT+TGG | - | Chr6:55969459-55969478 | None:intergenic | 50.0% | |
| !! | GCAAGTGGACTATTGCAGAG+AGG | - | Chr6:55969170-55969189 | None:intergenic | 50.0% |
| !!! | GGGTCCTTGCATTTTTTCCG+CGG | + | Chr6:55969683-55969702 | MsG0680033081.01.T01:CDS | 50.0% |
| CGGGCAAACCGAGTCAACAA+TGG | + | Chr6:55969345-55969364 | MsG0680033081.01.T01:CDS | 55.0% | |
| !! | TGGCGTCTTCGAGTTGCCAA+TGG | - | Chr6:55969095-55969114 | None:intergenic | 55.0% |
| GCCCGTGCAACCACTGAATG+AGG | - | Chr6:55969330-55969349 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 55968987 | 55970452 | 55968987 | ID=MsG0680033081.01;Name=MsG0680033081.01 |
| Chr6 | mRNA | 55968987 | 55970452 | 55968987 | ID=MsG0680033081.01.T01;Parent=MsG0680033081.01;Name=MsG0680033081.01.T01;_AED=0.40;_eAED=0.45;_QI=0|0.33|0.5|1|0|0.25|4|403|175 |
| Chr6 | exon | 55970218 | 55970452 | 55970218 | ID=MsG0680033081.01.T01:exon:16964;Parent=MsG0680033081.01.T01 |
| Chr6 | exon | 55969938 | 55970154 | 55969938 | ID=MsG0680033081.01.T01:exon:16963;Parent=MsG0680033081.01.T01 |
| Chr6 | CDS | 55968987 | 55969389 | 55968987 | ID=MsG0680033081.01.T01:cds;Parent=MsG0680033081.01.T01 |
| Chr6 | CDS | 55969629 | 55969704 | 55969629 | ID=MsG0680033081.01.T01:cds;Parent=MsG0680033081.01.T01 |
| Chr6 | CDS | 55969938 | 55969986 | 55969938 | ID=MsG0680033081.01.T01:cds;Parent=MsG0680033081.01.T01 |
| Chr6 | three_prime_UTR | 55969987 | 55970154 | 55969987 | ID=MsG0680033081.01.T01:three_prime_utr;Parent=MsG0680033081.01.T01 |
| Chr6 | three_prime_UTR | 55970218 | 55970452 | 55970218 | ID=MsG0680033081.01.T01:three_prime_utr;Parent=MsG0680033081.01.T01 |
| Chr6 | mRNA | 55968987 | 55970426 | 55968987 | ID=MsG0680033081.01.T02;Parent=MsG0680033081.01;Name=MsG0680033081.01.T02;_AED=0.40;_eAED=0.45;_QI=0|0.33|0.5|1|0|0.25|4|397|175 |
| Chr6 | exon | 55970233 | 55970426 | 55970233 | ID=MsG0680033081.01.T02:exon:16966;Parent=MsG0680033081.01.T02 |
| Chr6 | exon | 55969938 | 55970189 | 55969938 | ID=MsG0680033081.01.T02:exon:16965;Parent=MsG0680033081.01.T02 |
| Chr6 | CDS | 55968987 | 55969389 | 55968987 | ID=MsG0680033081.01.T02:cds;Parent=MsG0680033081.01.T02 |
| Chr6 | CDS | 55969629 | 55969704 | 55969629 | ID=MsG0680033081.01.T02:cds;Parent=MsG0680033081.01.T02 |
| Chr6 | CDS | 55969938 | 55969986 | 55969938 | ID=MsG0680033081.01.T02:cds;Parent=MsG0680033081.01.T02 |
| Chr6 | three_prime_UTR | 55969987 | 55970189 | 55969987 | ID=MsG0680033081.01.T02:three_prime_utr;Parent=MsG0680033081.01.T02 |
| Chr6 | three_prime_UTR | 55970233 | 55970426 | 55970233 | ID=MsG0680033081.01.T02:three_prime_utr;Parent=MsG0680033081.01.T02 |
| Gene Sequence |
| Protein sequence |
