Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038983.01.T01 | KEH23077.1 | 90.854 | 164 | 15 | 0 | 5 | 168 | 6 | 169 | 8.70E-106 | 310 |
| MsG0780038983.01.T05 | XP_013449050.2 | 94.444 | 108 | 6 | 0 | 1 | 108 | 25 | 132 | 3.94E-68 | 213 |
| MsG0780038983.01.T02 | KEH23077.1 | 90.854 | 164 | 15 | 0 | 1 | 164 | 6 | 169 | 7.81E-106 | 310 |
| MsG0780038983.01.T04 | XP_013449050.2 | 90.598 | 117 | 11 | 0 | 9 | 125 | 16 | 132 | 3.91E-70 | 218 |
| MsG0780038983.01.T03 | KEH23077.1 | 93.464 | 153 | 10 | 0 | 1 | 153 | 17 | 169 | 1.50E-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038983.01.T01 | A0A072U0B4 | 90.854 | 164 | 15 | 0 | 5 | 168 | 6 | 169 | 4.15e-106 | 310 |
| MsG0780038983.01.T02 | A0A072U0B4 | 90.854 | 164 | 15 | 0 | 1 | 164 | 6 | 169 | 3.73e-106 | 310 |
| MsG0780038983.01.T03 | A0A072U0B4 | 93.464 | 153 | 10 | 0 | 1 | 153 | 17 | 169 | 7.16e-103 | 301 |
| MsG0780038983.01.T04 | A0A396H0Q3 | 90.598 | 117 | 11 | 0 | 9 | 125 | 16 | 132 | 1.87e-70 | 218 |
| MsG0780038983.01.T05 | A0A396H0Q3 | 94.444 | 108 | 6 | 0 | 1 | 108 | 25 | 132 | 1.88e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048633.01 | MsG0780038983.01 | 0.817866 | 2.641112e-52 | 1.946070e-49 |
| MsG0080048652.01 | MsG0780038983.01 | 0.826527 | 2.583219e-54 | 2.428649e-51 |
| MsG0080048889.01 | MsG0780038983.01 | 0.829579 | 4.756975e-55 | 4.888587e-52 |
| MsG0180002808.01 | MsG0780038983.01 | 0.804572 | 2.026008e-49 | 1.048213e-46 |
| MsG0180003375.01 | MsG0780038983.01 | 0.811632 | 6.354410e-51 | 3.953305e-48 |
| MsG0180004787.01 | MsG0780038983.01 | -0.802463 | 5.542786e-49 | 2.716905e-46 |
| MsG0180005353.01 | MsG0780038983.01 | 0.804130 | 2.503732e-49 | 1.280745e-46 |
| MsG0180005757.01 | MsG0780038983.01 | 0.812154 | 4.890894e-51 | 3.086043e-48 |
| MsG0280006381.01 | MsG0780038983.01 | -0.802804 | 4.714728e-49 | 2.331260e-46 |
| MsG0280011269.01 | MsG0780038983.01 | 0.814673 | 1.366585e-51 | 9.227999e-49 |
| MsG0380014410.01 | MsG0780038983.01 | 0.805532 | 1.275680e-49 | 6.765150e-47 |
| MsG0380014642.01 | MsG0780038983.01 | -0.807158 | 5.795804e-50 | 3.204692e-47 |
| MsG0480019666.01 | MsG0780038983.01 | 0.807655 | 4.546459e-50 | 2.546558e-47 |
| MsG0480020958.01 | MsG0780038983.01 | 0.803649 | 3.152247e-49 | 1.592644e-46 |
| MsG0480022428.01 | MsG0780038983.01 | 0.816314 | 5.893950e-52 | 4.162484e-49 |
| MsG0480023195.01 | MsG0780038983.01 | 0.821338 | 4.258591e-53 | 3.455021e-50 |
| MsG0480023322.01 | MsG0780038983.01 | 0.813823 | 2.106142e-51 | 1.389817e-48 |
| MsG0580025105.01 | MsG0780038983.01 | -0.803978 | 2.693006e-49 | 1.372269e-46 |
| MsG0580025117.01 | MsG0780038983.01 | 0.836020 | 1.194805e-56 | 1.486811e-53 |
| MsG0280006485.01 | MsG0780038983.01 | 0.831152 | 1.962395e-55 | 2.111547e-52 |
| MsG0280007786.01 | MsG0780038983.01 | 0.819408 | 1.179948e-52 | 9.072279e-50 |
| MsG0780036890.01 | MsG0780038983.01 | 0.810920 | 9.066508e-51 | 5.536374e-48 |
| MsG0780037751.01 | MsG0780038983.01 | 0.807288 | 5.437796e-50 | 3.017084e-47 |
| MsG0780038305.01 | MsG0780038983.01 | 0.828316 | 9.620208e-55 | 9.527717e-52 |
| MsG0780038983.01 | MsG0780038985.01 | 0.908406 | 1.770734e-81 | 3.281880e-77 |
| MsG0780038983.01 | MsG0780039914.01 | 0.810093 | 1.368332e-50 | 8.173570e-48 |
| MsG0780038983.01 | MsG0780041079.01 | 0.815440 | 9.233175e-52 | 6.366395e-49 |
| MsG0780038983.01 | MsG0780041180.01 | 0.807567 | 4.746042e-50 | 2.652264e-47 |
| MsG0780038983.01 | MsG0780041531.01 | -0.815218 | 1.034683e-51 | 7.090188e-49 |
| MsG0780038983.01 | MsG0880043134.01 | 0.811196 | 7.899558e-51 | 4.858767e-48 |
| MsG0780038983.01 | MsG0880043261.01 | 0.830609 | 2.667416e-55 | 2.824435e-52 |
| MsG0780038983.01 | MsG0880043989.01 | 0.802876 | 4.555670e-49 | 2.256647e-46 |
| MsG0780038983.01 | MsG0880045804.01 | 0.836657 | 8.231399e-57 | 1.044054e-53 |
| MsG0780038983.01 | MsG0880045968.01 | -0.807840 | 4.151650e-50 | 2.336705e-47 |
| MsG0780038983.01 | MsG0880046174.01 | -0.808523 | 2.970329e-50 | 1.702179e-47 |
| MsG0780038983.01 | MsG0880047493.01 | 0.848960 | 4.392208e-60 | 8.199019e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038983.01.T01 | MTR_7g066110 | 90.854 | 164 | 15 | 0 | 5 | 168 | 6 | 169 | 1.05e-109 | 310 |
| MsG0780038983.01.T01 | MTR_4g018880 | 71.795 | 156 | 44 | 0 | 12 | 167 | 23 | 178 | 6.75e-82 | 240 |
| MsG0780038983.01.T01 | MTR_4g018860 | 71.519 | 158 | 45 | 0 | 1 | 158 | 12 | 169 | 3.99e-79 | 234 |
| MsG0780038983.01.T01 | MTR_4g018850 | 71.154 | 156 | 45 | 0 | 12 | 167 | 23 | 178 | 6.22e-78 | 231 |
| MsG0780038983.01.T01 | MTR_4g018880 | 74.545 | 110 | 28 | 0 | 12 | 121 | 23 | 132 | 1.38e-59 | 182 |
| MsG0780038983.01.T01 | MTR_6g452730 | 54.248 | 153 | 66 | 2 | 14 | 165 | 22 | 171 | 4.12e-56 | 175 |
| MsG0780038983.01.T01 | MTR_1g101120 | 52.564 | 156 | 73 | 1 | 1 | 155 | 15 | 170 | 1.45e-55 | 174 |
| MsG0780038983.01.T01 | MTR_7g066090 | 77.049 | 61 | 14 | 0 | 5 | 65 | 16 | 76 | 3.89e-26 | 95.1 |
| MsG0780038983.01.T05 | MTR_7g066110 | 94.444 | 108 | 6 | 0 | 1 | 108 | 15 | 122 | 7.65e-72 | 212 |
| MsG0780038983.01.T05 | MTR_4g018880 | 73.394 | 109 | 29 | 0 | 1 | 109 | 25 | 133 | 1.56e-58 | 177 |
| MsG0780038983.01.T05 | MTR_4g018880 | 74.074 | 108 | 28 | 0 | 1 | 108 | 25 | 132 | 2.71e-58 | 178 |
| MsG0780038983.01.T05 | MTR_4g018860 | 75.926 | 108 | 26 | 0 | 1 | 108 | 25 | 132 | 5.31e-57 | 176 |
| MsG0780038983.01.T05 | MTR_4g018850 | 75.000 | 108 | 27 | 0 | 1 | 108 | 25 | 132 | 1.83e-56 | 174 |
| MsG0780038983.01.T05 | MTR_6g452730 | 54.630 | 108 | 49 | 0 | 1 | 108 | 22 | 129 | 7.09e-42 | 137 |
| MsG0780038983.01.T05 | MTR_1g101120 | 54.630 | 108 | 49 | 0 | 1 | 108 | 28 | 135 | 6.65e-41 | 134 |
| MsG0780038983.01.T05 | MTR_7g066090 | 82.692 | 52 | 9 | 0 | 1 | 52 | 25 | 76 | 8.04e-25 | 90.1 |
| MsG0780038983.01.T02 | MTR_7g066110 | 90.854 | 164 | 15 | 0 | 1 | 164 | 6 | 169 | 9.46e-110 | 310 |
| MsG0780038983.01.T02 | MTR_4g018880 | 71.795 | 156 | 44 | 0 | 8 | 163 | 23 | 178 | 6.37e-82 | 239 |
| MsG0780038983.01.T02 | MTR_4g018860 | 72.727 | 154 | 42 | 0 | 1 | 154 | 16 | 169 | 9.54e-79 | 233 |
| MsG0780038983.01.T02 | MTR_4g018850 | 71.154 | 156 | 45 | 0 | 8 | 163 | 23 | 178 | 6.26e-78 | 231 |
| MsG0780038983.01.T02 | MTR_4g018880 | 74.545 | 110 | 28 | 0 | 8 | 117 | 23 | 132 | 1.57e-59 | 181 |
| MsG0780038983.01.T02 | MTR_6g452730 | 54.248 | 153 | 66 | 2 | 10 | 161 | 22 | 171 | 3.40e-56 | 175 |
| MsG0780038983.01.T02 | MTR_1g101120 | 55.944 | 143 | 62 | 1 | 10 | 151 | 28 | 170 | 2.45e-55 | 173 |
| MsG0780038983.01.T02 | MTR_7g066090 | 77.049 | 61 | 14 | 0 | 1 | 61 | 16 | 76 | 3.33e-26 | 95.1 |
| MsG0780038983.01.T04 | MTR_7g066110 | 90.598 | 117 | 11 | 0 | 9 | 125 | 6 | 122 | 6.57e-74 | 218 |
| MsG0780038983.01.T04 | MTR_4g018880 | 73.874 | 111 | 29 | 0 | 16 | 126 | 23 | 133 | 5.86e-60 | 181 |
| MsG0780038983.01.T04 | MTR_4g018880 | 74.545 | 110 | 28 | 0 | 16 | 125 | 23 | 132 | 8.08e-60 | 182 |
| MsG0780038983.01.T04 | MTR_4g018860 | 71.074 | 121 | 35 | 0 | 5 | 125 | 12 | 132 | 5.52e-58 | 179 |
| MsG0780038983.01.T04 | MTR_4g018850 | 74.545 | 110 | 28 | 0 | 16 | 125 | 23 | 132 | 7.19e-57 | 176 |
| MsG0780038983.01.T04 | MTR_6g452730 | 54.630 | 108 | 49 | 0 | 18 | 125 | 22 | 129 | 6.76e-42 | 137 |
| MsG0780038983.01.T04 | MTR_1g101120 | 49.630 | 135 | 58 | 2 | 1 | 125 | 1 | 135 | 1.43e-41 | 137 |
| MsG0780038983.01.T04 | MTR_7g066090 | 77.049 | 61 | 14 | 0 | 9 | 69 | 16 | 76 | 2.08e-26 | 94.7 |
| MsG0780038983.01.T03 | MTR_7g066110 | 93.464 | 153 | 10 | 0 | 1 | 153 | 17 | 169 | 1.82e-106 | 301 |
| MsG0780038983.01.T03 | MTR_4g018880 | 71.711 | 152 | 43 | 0 | 1 | 152 | 27 | 178 | 7.81e-80 | 234 |
| MsG0780038983.01.T03 | MTR_4g018860 | 75.524 | 143 | 35 | 0 | 1 | 143 | 27 | 169 | 3.99e-77 | 228 |
| MsG0780038983.01.T03 | MTR_4g018850 | 71.711 | 152 | 43 | 0 | 1 | 152 | 27 | 178 | 8.03e-77 | 228 |
| MsG0780038983.01.T03 | MTR_4g018880 | 74.528 | 106 | 27 | 0 | 1 | 106 | 27 | 132 | 1.96e-57 | 176 |
| MsG0780038983.01.T03 | MTR_6g452730 | 54.967 | 151 | 64 | 2 | 1 | 150 | 24 | 171 | 7.77e-56 | 174 |
| MsG0780038983.01.T03 | MTR_1g101120 | 56.738 | 141 | 60 | 1 | 1 | 140 | 30 | 170 | 3.90e-55 | 172 |
| MsG0780038983.01.T03 | MTR_7g066090 | 84.000 | 50 | 8 | 0 | 1 | 50 | 27 | 76 | 7.61e-24 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038983.01.T01 | AT3G54040 | 54.598 | 174 | 70 | 2 | 1 | 168 | 13 | 183 | 1.97e-62 | 191 |
| MsG0780038983.01.T01 | AT3G54040 | 59.236 | 157 | 60 | 2 | 1 | 156 | 68 | 221 | 7.02e-62 | 191 |
| MsG0780038983.01.T01 | AT5G52390 | 47.929 | 169 | 86 | 1 | 1 | 167 | 11 | 179 | 6.79e-51 | 162 |
| MsG0780038983.01.T05 | AT3G54040 | 61.111 | 108 | 39 | 1 | 1 | 108 | 26 | 130 | 6.47e-42 | 137 |
| MsG0780038983.01.T05 | AT3G54040 | 61.111 | 108 | 39 | 1 | 1 | 108 | 82 | 186 | 1.64e-41 | 137 |
| MsG0780038983.01.T05 | AT5G52390 | 54.630 | 108 | 49 | 0 | 1 | 108 | 26 | 133 | 4.86e-39 | 129 |
| MsG0780038983.01.T02 | AT3G54040 | 55.294 | 170 | 67 | 2 | 1 | 164 | 17 | 183 | 2.15e-62 | 190 |
| MsG0780038983.01.T02 | AT3G54040 | 59.211 | 152 | 59 | 1 | 1 | 152 | 73 | 221 | 1.07e-61 | 191 |
| MsG0780038983.01.T02 | AT5G52390 | 49.677 | 155 | 78 | 0 | 9 | 163 | 25 | 179 | 7.44e-51 | 161 |
| MsG0780038983.01.T04 | AT3G54040 | 56.198 | 121 | 50 | 1 | 5 | 125 | 13 | 130 | 1.43e-42 | 139 |
| MsG0780038983.01.T04 | AT3G54040 | 56.198 | 121 | 50 | 1 | 5 | 125 | 69 | 186 | 3.45e-42 | 140 |
| MsG0780038983.01.T04 | AT5G52390 | 51.220 | 123 | 58 | 1 | 5 | 125 | 11 | 133 | 3.40e-39 | 130 |
| MsG0780038983.01.T03 | AT3G54040 | 57.233 | 159 | 59 | 2 | 1 | 153 | 28 | 183 | 1.27e-60 | 185 |
| MsG0780038983.01.T03 | AT3G54040 | 61.702 | 141 | 51 | 1 | 1 | 141 | 84 | 221 | 5.44e-60 | 186 |
| MsG0780038983.01.T03 | AT5G52390 | 50.000 | 152 | 76 | 0 | 1 | 152 | 28 | 179 | 2.06e-50 | 160 |
Find 32 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATATTGGGGCAATTT+TGG | 0.141377 | 7:+56346199 | None:intergenic |
| TGTTGACCTTTACTTCAATT+TGG | 0.213939 | 7:-56346181 | MsG0780038983.01.T01:CDS |
| GAAGTAAAGGTCAACAATAT+TGG | 0.286026 | 7:+56346188 | None:intergenic |
| AAGTAAAGGTCAACAATATT+GGG | 0.297379 | 7:+56346189 | None:intergenic |
| TTCTTTCTCAATAGCTTCTT+CGG | 0.299623 | 7:-56346436 | MsG0780038983.01.T01:CDS |
| CTTTACTTCAATTTGGCTGC+TGG | 0.332953 | 7:-56346174 | MsG0780038983.01.T01:CDS |
| TCTTTCTCAATAGCTTCTTC+GGG | 0.391677 | 7:-56346435 | MsG0780038983.01.T01:CDS |
| ACAAGATGGTGAACAAAGTT+TGG | 0.401861 | 7:+56346224 | None:intergenic |
| TTCGGGAAAACGGTGTTTGT+TGG | 0.412274 | 7:-56346418 | MsG0780038983.01.T01:CDS |
| ATCTTCATGCATAAAAGTTA+TGG | 0.445122 | 7:+56346124 | None:intergenic |
| TTCAATTTGGCTGCTGGGGA+AGG | 0.450339 | 7:-56346168 | MsG0780038983.01.T01:intron |
| CAATAGCTTCTTCGGGAAAA+CGG | 0.456077 | 7:-56346428 | MsG0780038983.01.T01:CDS |
| AGAAGTGGTGGTTGAGAGAA+TGG | 0.457204 | 7:-56346346 | MsG0780038983.01.T01:CDS |
| TTTACTTCAATTTGGCTGCT+GGG | 0.473999 | 7:-56346173 | MsG0780038983.01.T01:CDS |
| CAGCAGCCAAATTGAAGTAA+AGG | 0.504408 | 7:+56346175 | None:intergenic |
| GTGGTGGTTGAGAGAATGGC+GGG | 0.547487 | 7:-56346342 | MsG0780038983.01.T01:CDS |
| GAGACAGAGAAGGCCGCAGA+TGG | 0.573015 | 7:-56346396 | MsG0780038983.01.T01:CDS |
| CAAAGTTTGGCTGTGAATTG+TGG | 0.578087 | 7:+56346237 | None:intergenic |
| TGTGTGTGAGGATTTGCAAA+AGG | 0.578252 | 7:-56346466 | MsG0780038983.01.T01:CDS |
| ACAGAGAAGGCCGCAGATGG+TGG | 0.578762 | 7:-56346393 | MsG0780038983.01.T01:CDS |
| GTGTTTGTTGGAGACAGAGA+AGG | 0.584309 | 7:-56346406 | MsG0780038983.01.T01:CDS |
| GATCAATGTGTGAATGCTTG+TGG | 0.593710 | 7:-56346306 | MsG0780038983.01.T01:CDS |
| TTACTTCAATTTGGCTGCTG+GGG | 0.597417 | 7:-56346172 | MsG0780038983.01.T01:CDS |
| TTGTGGCTCAAGCAATGCAT+CGG | 0.603597 | 7:+56346254 | None:intergenic |
| CCACTTCTGATGTCCTACAT+TGG | 0.621979 | 7:+56346361 | None:intergenic |
| AGTAAAGGTCAACAATATTG+GGG | 0.636729 | 7:+56346190 | None:intergenic |
| GTGGCGTCGAGTACCAATGT+AGG | 0.640711 | 7:-56346374 | MsG0780038983.01.T01:CDS |
| ATGTAGGACATCAGAAGTGG+TGG | 0.644390 | 7:-56346358 | MsG0780038983.01.T01:CDS |
| CCAATGTAGGACATCAGAAG+TGG | 0.655889 | 7:-56346361 | MsG0780038983.01.T01:CDS |
| AACAGCTGAAGTTGTGTGTG+AGG | 0.657796 | 7:-56346478 | MsG0780038983.01.T01:CDS |
| GTACTCGACGCCACCATCTG+CGG | 0.692101 | 7:+56346383 | None:intergenic |
| AGTGGTGGTTGAGAGAATGG+CGG | 0.692695 | 7:-56346343 | MsG0780038983.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAATAATTATAATAAAGA+AGG | - | Chr7:56346354-56346373 | MsG0780038983.01.T01:CDS | 10.0% |
| !! | AACAAAAAATAAAACAAAGA+AGG | - | Chr7:56344471-56344490 | MsG0780038983.01.T01:intron | 15.0% |
| !! | AATAAATGACAAAAAATGAA+AGG | - | Chr7:56344875-56344894 | MsG0780038983.01.T01:intron | 15.0% |
| !! | AGAAAAAAAAACAAAACATA+GGG | - | Chr7:56344298-56344317 | MsG0780038983.01.T01:intron | 15.0% |
| !! | ATATTATTGTTATGAATTAG+AGG | - | Chr7:56344524-56344543 | MsG0780038983.01.T01:intron | 15.0% |
| !! | TAACTTCAAATTTAATCAAA+GGG | - | Chr7:56344428-56344447 | MsG0780038983.01.T01:intron | 15.0% |
| !! | TAGAAAAAAAAACAAAACAT+AGG | - | Chr7:56344297-56344316 | MsG0780038983.01.T01:intron | 15.0% |
| !! | TTAACTTCAAATTTAATCAA+AGG | - | Chr7:56344427-56344446 | MsG0780038983.01.T01:intron | 15.0% |
| !! | TTTGAACAATTCAAATAATT+GGG | - | Chr7:56344167-56344186 | MsG0780038983.01.T01:intron | 15.0% |
| !!! | TTTTGAACAATTCAAATAAT+TGG | - | Chr7:56344166-56344185 | MsG0780038983.01.T01:intron | 15.0% |
| !!! | TTTTTCAAAATTAGATGAAA+AGG | + | Chr7:56344232-56344251 | None:intergenic | 15.0% |
| !! | TTGTATTTCAAACTCAAAAT+TGG | + | Chr7:56344799-56344818 | None:intergenic | 20.0% |
| !! | TTGTTCAAAATATGATGAAA+AGG | + | Chr7:56344156-56344175 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTTTGAAATACA+AGG | - | Chr7:56344798-56344817 | MsG0780038983.01.T01:intron | 20.0% |
| ! | AAAGATGAGAAATAGTACAT+AGG | - | Chr7:56344630-56344649 | MsG0780038983.01.T01:intron | 25.0% |
| ! | AAGTAAAGGTCAACAATATT+GGG | + | Chr7:56344032-56344051 | None:intergenic | 25.0% |
| ! | ACAGAAGATTTATAGTTGTA+CGG | + | Chr7:56345200-56345219 | None:intergenic | 25.0% |
| ! | ACTGAAGAAACTAAGTAAAA+TGG | - | Chr7:56344841-56344860 | MsG0780038983.01.T01:intron | 25.0% |
| ! | ATCTTCATGCATAAAAGTTA+TGG | + | Chr7:56344097-56344116 | None:intergenic | 25.0% |
| ! | CTGAAGAAACTAAGTAAAAT+GGG | - | Chr7:56344842-56344861 | MsG0780038983.01.T01:intron | 25.0% |
| ! | GTTAAAATGTTAGATCATGA+CGG | + | Chr7:56344412-56344431 | None:intergenic | 25.0% |
| ! | TAGATTCTATAATTCTCTCT+AGG | - | Chr7:56344581-56344600 | MsG0780038983.01.T01:intron | 25.0% |
| ! | TGAAGAAACTAAGTAAAATG+GGG | - | Chr7:56344843-56344862 | MsG0780038983.01.T01:intron | 25.0% |
| !! | TTCTTGTTGTCTTAATTTCT+TGG | - | Chr7:56344264-56344283 | MsG0780038983.01.T01:intron | 25.0% |
| AAATGAAAGGAAAACATGAC+AGG | - | Chr7:56344888-56344907 | MsG0780038983.01.T01:intron | 30.0% | |
| AGTAAAGGTCAACAATATTG+GGG | + | Chr7:56344031-56344050 | None:intergenic | 30.0% | |
| GAAGAAACTAAGTAAAATGG+GGG | - | Chr7:56344844-56344863 | MsG0780038983.01.T01:intron | 30.0% | |
| GAAGTAAAGGTCAACAATAT+TGG | + | Chr7:56344033-56344052 | None:intergenic | 30.0% | |
| GAATCCTCTAATTCATAACA+TGG | + | Chr7:56344531-56344550 | None:intergenic | 30.0% | |
| GATACCATGTTATGAATTAG+AGG | - | Chr7:56346120-56346139 | MsG0780038983.01.T01:intron | 30.0% | |
| TGTTGACCTTTACTTCAATT+TGG | - | Chr7:56344037-56344056 | MsG0780038983.01.T01:intron | 30.0% | |
| TTATGAATTAGAGGATTCCA+TGG | - | Chr7:56344533-56344552 | MsG0780038983.01.T01:intron | 30.0% | |
| TTCTTTCTCAATAGCTTCTT+CGG | - | Chr7:56343782-56343801 | MsG0780038983.01.T01:CDS | 30.0% | |
| TTGTTGTCTTAATTTCTTGG+TGG | - | Chr7:56344267-56344286 | MsG0780038983.01.T01:intron | 30.0% | |
| ! | ACTTTTATGCATGAAGATCA+TGG | - | Chr7:56344099-56344118 | MsG0780038983.01.T01:intron | 30.0% |
| ! | GGAGTTGAAAGAAATTTTGT+TGG | - | Chr7:56343933-56343952 | MsG0780038983.01.T01:intron | 30.0% |
| !! | GTGATTCAATGAGTTGTTTT+TGG | + | Chr7:56345046-56345065 | None:intergenic | 30.0% |
| !!! | GTTCTACCTAATCACTTTTT+GGG | + | Chr7:56345014-56345033 | None:intergenic | 30.0% |
| ACAAGATGGTGAACAAAGTT+TGG | + | Chr7:56343997-56344016 | None:intergenic | 35.0% | |
| AGCAAGTTATCTAGATAGCT+TGG | + | Chr7:56344713-56344732 | None:intergenic | 35.0% | |
| AGGTCCAAAGCATATGATAA+CGG | - | Chr7:56345684-56345703 | MsG0780038983.01.T01:intron | 35.0% | |
| ATCTTCTTCTTCATCACCAT+TGG | - | Chr7:56346044-56346063 | MsG0780038983.01.T01:intron | 35.0% | |
| CTAGATCAAATGCAATGGAA+AGG | - | Chr7:56344558-56344577 | MsG0780038983.01.T01:intron | 35.0% | |
| GATACCGTTATCATATGCTT+TGG | + | Chr7:56345691-56345710 | None:intergenic | 35.0% | |
| GATGAAATTTGACAGAGAAG+AGG | - | Chr7:56345525-56345544 | MsG0780038983.01.T01:intron | 35.0% | |
| GATGAAGAAGAAGATTCCAA+TGG | + | Chr7:56346063-56346082 | None:intergenic | 35.0% | |
| GTATAGTGAAGTCGATAACT+TGG | + | Chr7:56344738-56344757 | None:intergenic | 35.0% | |
| GTGGCTTATTTATAGTGGTT+TGG | - | Chr7:56344654-56344673 | MsG0780038983.01.T01:intron | 35.0% | |
| TAGGTGTGGCTTATTTATAG+TGG | - | Chr7:56346245-56346264 | MsG0780038983.01.T01:CDS | 35.0% | |
| TCTTTCTCAATAGCTTCTTC+GGG | - | Chr7:56343783-56343802 | MsG0780038983.01.T01:CDS | 35.0% | |
| TGAGAAATAGTACATAGGTG+TGG | - | Chr7:56346231-56346250 | MsG0780038983.01.T01:CDS | 35.0% | |
| TTTACTTCAATTTGGCTGCT+GGG | - | Chr7:56344045-56344064 | MsG0780038983.01.T01:intron | 35.0% | |
| ! | ATATGCTTTGGACCTGTTTA+CGG | + | Chr7:56345679-56345698 | None:intergenic | 35.0% |
| ! | CAACAATATTGGGGCAATTT+TGG | + | Chr7:56344022-56344041 | None:intergenic | 35.0% |
| ! | CTTTTTACAAAAACGCGCTT+TGG | + | Chr7:56345296-56345315 | None:intergenic | 35.0% |
| ! | GTTTCTCTTATCCTTGTTTC+TGG | + | Chr7:56345327-56345346 | None:intergenic | 35.0% |
| ! | GTTTTCACCACAAATCACTA+TGG | + | Chr7:56344193-56344212 | None:intergenic | 35.0% |
| ! | TTGCATTTGATCTAGAACCA+TGG | + | Chr7:56344553-56344572 | None:intergenic | 35.0% |
| !! | CGTTCTACCTAATCACTTTT+TGG | + | Chr7:56345015-56345034 | None:intergenic | 35.0% |
| !! | TGGTTCTAGATCAAATGCAA+TGG | - | Chr7:56344553-56344572 | MsG0780038983.01.T01:intron | 35.0% |
| !!! | AAGCACTTTTTCCAGAAACA+AGG | - | Chr7:56345313-56345332 | MsG0780038983.01.T01:intron | 35.0% |
| !!! | ACTTTCCCATTTTGAGTTTG+AGG | + | Chr7:56344773-56344792 | None:intergenic | 35.0% |
| !!! | CTTTCCCATTTTGAGTTTGA+GGG | + | Chr7:56344772-56344791 | None:intergenic | 35.0% |
| !!! | CTTTTGGGATAAGCTGTTTA+TGG | + | Chr7:56345078-56345097 | None:intergenic | 35.0% |
| !!! | TTTCCCATTTTGAGTTTGAG+GGG | + | Chr7:56344771-56344790 | None:intergenic | 35.0% |
| AACCAAGAAATTCTTCCACC+TGG | - | Chr7:56345466-56345485 | MsG0780038983.01.T01:intron | 40.0% | |
| AATTGGGCCATAGTGATTTG+TGG | - | Chr7:56344183-56344202 | MsG0780038983.01.T01:intron | 40.0% | |
| ACGGATCAAATAAGCTGGTT+TGG | + | Chr7:56345181-56345200 | None:intergenic | 40.0% | |
| ATCCAGGTGGAAGAATTTCT+TGG | + | Chr7:56345471-56345490 | None:intergenic | 40.0% | |
| ATGGTGAATCCATCAGTTTC+TGG | - | Chr7:56345916-56345935 | MsG0780038983.01.T01:intron | 40.0% | |
| ATTCGTCGAATTCGTGGATT+TGG | - | Chr7:56345771-56345790 | MsG0780038983.01.T01:intron | 40.0% | |
| CAAAGTTTGGCTGTGAATTG+TGG | + | Chr7:56343984-56344003 | None:intergenic | 40.0% | |
| CAATAGCTTCTTCGGGAAAA+CGG | - | Chr7:56343790-56343809 | MsG0780038983.01.T01:CDS | 40.0% | |
| CAGCAGCCAAATTGAAGTAA+AGG | + | Chr7:56344046-56344065 | None:intergenic | 40.0% | |
| CAGGTTCCCAAAAAGTGATT+AGG | - | Chr7:56345005-56345024 | MsG0780038983.01.T01:intron | 40.0% | |
| CGTGAATCAACGAGAAAACA+AGG | - | Chr7:56345877-56345896 | MsG0780038983.01.T01:intron | 40.0% | |
| CTTGTGACAGAGTAGAAACA+GGG | + | Chr7:56346487-56346506 | None:intergenic | 40.0% | |
| CTTTACTTCAATTTGGCTGC+TGG | - | Chr7:56344044-56344063 | MsG0780038983.01.T01:intron | 40.0% | |
| GAGAGCAAGCTAGTTAGTTA+GGG | + | Chr7:56344691-56344710 | None:intergenic | 40.0% | |
| GATCAATGTGTGAATGCTTG+TGG | - | Chr7:56343912-56343931 | MsG0780038983.01.T01:intron | 40.0% | |
| GGATAAGAGAAACGTGATTC+TGG | - | Chr7:56345334-56345353 | MsG0780038983.01.T01:intron | 40.0% | |
| GTTGTACGGATCAAATAAGC+TGG | + | Chr7:56345186-56345205 | None:intergenic | 40.0% | |
| TAGGCGTGGCTTATTTATAG+TGG | - | Chr7:56344649-56344668 | MsG0780038983.01.T01:intron | 40.0% | |
| TCTTCTTCTTCATCAGAGAC+TGG | - | Chr7:56346069-56346088 | MsG0780038983.01.T01:intron | 40.0% | |
| TCTTGTGACAGAGTAGAAAC+AGG | + | Chr7:56346488-56346507 | None:intergenic | 40.0% | |
| TGAAGAAACAGGAGTGGAAA+CGG | - | Chr7:56345951-56345970 | MsG0780038983.01.T01:intron | 40.0% | |
| TGAGAAATAGTACATAGGCG+TGG | - | Chr7:56344635-56344654 | MsG0780038983.01.T01:intron | 40.0% | |
| TGTAACATGATTCTGCAGAC+AGG | - | Chr7:56345217-56345236 | MsG0780038983.01.T01:intron | 40.0% | |
| TGTGTGTGAGGATTTGCAAA+AGG | - | Chr7:56343752-56343771 | MsG0780038983.01.T01:CDS | 40.0% | |
| TTACTTCAATTTGGCTGCTG+GGG | - | Chr7:56344046-56344065 | MsG0780038983.01.T01:intron | 40.0% | |
| TTCTGCATAAGCTGCTTCTT+TGG | + | Chr7:56345248-56345267 | None:intergenic | 40.0% | |
| ! | AGCTATTGTGTTCCACGTTT+TGG | + | Chr7:56344956-56344975 | None:intergenic | 40.0% |
| ! | AGGCTACTTTGATACTATGC+AGG | - | Chr7:56346374-56346393 | MsG0780038983.01.T01:CDS | 40.0% |
| ! | CGCGTTTTCAAATAAGTCGT+TGG | + | Chr7:56345153-56345172 | None:intergenic | 40.0% |
| ! | GATGGATTCACCATCAAGAT+CGG | + | Chr7:56345910-56345929 | None:intergenic | 40.0% |
| ! | TTTTGCATCTCACAGAGATC+AGG | + | Chr7:56346410-56346429 | None:intergenic | 40.0% |
| !! | AAACTGAGTCTTGCTGTTGT+CGG | - | Chr7:56345612-56345631 | MsG0780038983.01.T01:intron | 40.0% |
| !! | AGCAATTGGTTCCTGTTTTC+TGG | - | Chr7:56345639-56345658 | MsG0780038983.01.T01:intron | 40.0% |
| !! | CAAGTTGTTTTCGGTAGCTT+TGG | + | Chr7:56345982-56346001 | None:intergenic | 40.0% |
| !! | GCTCTAAAGATTCCAAAACG+TGG | - | Chr7:56344941-56344960 | MsG0780038983.01.T01:intron | 40.0% |
| !! | GGGCAATTTTGGTAACAAGA+TGG | + | Chr7:56344011-56344030 | None:intergenic | 40.0% |
| !! | GTTTTCGTTTTTGATCCAGG+TGG | + | Chr7:56345484-56345503 | None:intergenic | 40.0% |
| !! | TGCGTTTTCGTTTTTGATCC+AGG | + | Chr7:56345487-56345506 | None:intergenic | 40.0% |
| !!! | AGAAGCAGAAAAAGCGCTTT+TGG | + | Chr7:56345094-56345113 | None:intergenic | 40.0% |
| !!! | CGTTTTGGAATCTTTAGAGC+TGG | + | Chr7:56344941-56344960 | None:intergenic | 40.0% |
| !!! | CTAATCACTTTTTGGGAACC+TGG | + | Chr7:56345007-56345026 | None:intergenic | 40.0% |
| !!! | GAAGCAGAAAAAGCGCTTTT+GGG | + | Chr7:56345093-56345112 | None:intergenic | 40.0% |
| !!! | TTCATCGTCGATTTTGATCC+CGG | + | Chr7:56345574-56345593 | None:intergenic | 40.0% |
| !!! | TTCCCATTTTGAGTTTGAGG+GGG | + | Chr7:56344770-56344789 | None:intergenic | 40.0% |
| AACAGCTGAAGTTGTGTGTG+AGG | - | Chr7:56343740-56343759 | MsG0780038983.01.T01:CDS | 45.0% | |
| ACCGAAAACAACTTGCGAAG+CGG | - | Chr7:56345987-56346006 | MsG0780038983.01.T01:intron | 45.0% | |
| AGAACACAAGGTTGCTGATG+CGG | - | Chr7:56346011-56346030 | MsG0780038983.01.T01:intron | 45.0% | |
| AGAAGTGGTGGTTGAGAGAA+TGG | - | Chr7:56343872-56343891 | MsG0780038983.01.T01:intron | 45.0% | |
| AGTCCCCCTCAAACTCAAAA+TGG | - | Chr7:56344764-56344783 | MsG0780038983.01.T01:intron | 45.0% | |
| ATGTAGGACATCAGAAGTGG+TGG | - | Chr7:56343860-56343879 | MsG0780038983.01.T01:intron | 45.0% | |
| CCAATGTAGGACATCAGAAG+TGG | - | Chr7:56343857-56343876 | MsG0780038983.01.T01:intron | 45.0% | |
| CCACTTCTGATGTCCTACAT+TGG | + | Chr7:56343860-56343879 | None:intergenic | 45.0% | |
| GAGTTCTCACTCTTGGACTT+AGG | + | Chr7:56344914-56344933 | None:intergenic | 45.0% | |
| GGAGAGCAAGCTAGTTAGTT+AGG | + | Chr7:56344692-56344711 | None:intergenic | 45.0% | |
| GTCCCCCTCAAACTCAAAAT+GGG | - | Chr7:56344765-56344784 | MsG0780038983.01.T01:intron | 45.0% | |
| TCTGCTGAAAATCTGCAACC+AGG | - | Chr7:56344986-56345005 | MsG0780038983.01.T01:intron | 45.0% | |
| TTCGGGAAAACGGTGTTTGT+TGG | - | Chr7:56343800-56343819 | MsG0780038983.01.T01:CDS | 45.0% | |
| TTGTGGCTCAAGCAATGCAT+CGG | + | Chr7:56343967-56343986 | None:intergenic | 45.0% | |
| ! | AACATGGTATCAGAGCGCTA+TGG | + | Chr7:56346111-56346130 | None:intergenic | 45.0% |
| ! | GAGAGCATGCGAAGAAGAAT+TGG | + | Chr7:56345383-56345402 | None:intergenic | 45.0% |
| ! | GTGTTTGTTGGAGACAGAGA+AGG | - | Chr7:56343812-56343831 | MsG0780038983.01.T01:CDS | 45.0% |
| !! | TCCGCTTCGCAAGTTGTTTT+CGG | + | Chr7:56345991-56346010 | None:intergenic | 45.0% |
| !! | TGGAATCTTTAGAGCTGGAC+TGG | + | Chr7:56344936-56344955 | None:intergenic | 45.0% |
| !!! | GTTGTTTTCGGTAGCTTTGG+CGG | + | Chr7:56345979-56345998 | None:intergenic | 45.0% |
| AAGAGGACAACGAACCGCAA+TGG | - | Chr7:56345542-56345561 | MsG0780038983.01.T01:intron | 50.0% | |
| AAGCAGCAAACGCCGTAAAC+AGG | - | Chr7:56345664-56345683 | MsG0780038983.01.T01:intron | 50.0% | |
| AGGAACGTCACCGATCTTGA+TGG | - | Chr7:56345897-56345916 | MsG0780038983.01.T01:intron | 50.0% | |
| AGTGGTGGTTGAGAGAATGG+CGG | - | Chr7:56343875-56343894 | MsG0780038983.01.T01:intron | 50.0% | |
| ATGATCGAGCTTGTCAGCTC+AGG | - | Chr7:56346449-56346468 | MsG0780038983.01.T01:CDS | 50.0% | |
| CCATGGTGAAGAAACAGGAG+TGG | - | Chr7:56345945-56345964 | MsG0780038983.01.T01:intron | 50.0% | |
| CTCGCAATTCGTCGAATTCG+TGG | - | Chr7:56345765-56345784 | MsG0780038983.01.T01:intron | 50.0% | |
| CTGTTGTCGGCAGAAGCAAT+TGG | - | Chr7:56345625-56345644 | MsG0780038983.01.T01:intron | 50.0% | |
| GCGATCCATGGTGAAGAAAC+AGG | - | Chr7:56345940-56345959 | MsG0780038983.01.T01:intron | 50.0% | |
| TGGATCGCACCAGAAACTGA+TGG | + | Chr7:56345928-56345947 | None:intergenic | 50.0% | |
| TTCAATTTGGCTGCTGGGGA+AGG | - | Chr7:56344050-56344069 | MsG0780038983.01.T01:intron | 50.0% | |
| TTGCGAAGCGGAAGAACACA+AGG | - | Chr7:56345999-56346018 | MsG0780038983.01.T01:intron | 50.0% | |
| ! | CCACTCCTGTTTCTTCACCA+TGG | + | Chr7:56345948-56345967 | None:intergenic | 50.0% |
| ! | TGGACTGGAGTTCTCACTCT+TGG | + | Chr7:56344921-56344940 | None:intergenic | 50.0% |
| ! | TTGCTGCTTCGCCAGAAAAC+AGG | + | Chr7:56345653-56345672 | None:intergenic | 50.0% |
| !! | TCAGTTTCTGGTGCGATCCA+TGG | - | Chr7:56345928-56345947 | MsG0780038983.01.T01:intron | 50.0% |
| !!! | ATCGTCGATTTTGATCCCGG+CGG | + | Chr7:56345571-56345590 | None:intergenic | 50.0% |
| AGCTCGATCATAGCGCGATG+AGG | + | Chr7:56346440-56346459 | None:intergenic | 55.0% | |
| GACAGAGTAGAAACAGGGCC+AGG | + | Chr7:56346482-56346501 | None:intergenic | 55.0% | |
| GATCATAGCGCGATGAGGGT+TGG | + | Chr7:56346435-56346454 | None:intergenic | 55.0% | |
| GCTCGATCATAGCGCGATGA+GGG | + | Chr7:56346439-56346458 | None:intergenic | 55.0% | |
| GTGGTGGTTGAGAGAATGGC+GGG | - | Chr7:56343876-56343895 | MsG0780038983.01.T01:intron | 55.0% | |
| TCGCATGCTCTCTCTTCTCG+AGG | - | Chr7:56345391-56345410 | MsG0780038983.01.T01:intron | 55.0% | |
| ! | GTGGCGTCGAGTACCAATGT+AGG | - | Chr7:56343844-56343863 | MsG0780038983.01.T01:intron | 55.0% |
| ACAGAGAAGGCCGCAGATGG+TGG | - | Chr7:56343825-56343844 | MsG0780038983.01.T01:CDS | 60.0% | |
| CGAACCGCAATGGTTTCCGC+CGG | - | Chr7:56345552-56345571 | MsG0780038983.01.T01:intron | 60.0% | |
| GAACCGCAATGGTTTCCGCC+GGG | - | Chr7:56345553-56345572 | MsG0780038983.01.T01:intron | 60.0% | |
| GAGACAGAGAAGGCCGCAGA+TGG | - | Chr7:56343822-56343841 | MsG0780038983.01.T01:CDS | 60.0% | |
| GATCCCGGCGGAAACCATTG+CGG | + | Chr7:56345559-56345578 | None:intergenic | 60.0% | |
| GTACTCGACGCCACCATCTG+CGG | + | Chr7:56343838-56343857 | None:intergenic | 60.0% | |
| GTCAGCTCAGGAGCTGCACC+TGG | - | Chr7:56346461-56346480 | MsG0780038983.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 56343699 | 56346541 | 56343699 | ID=MsG0780038983.01;Name=MsG0780038983.01 |
| Chr7 | mRNA | 56343699 | 56346529 | 56343699 | ID=MsG0780038983.01.T01;Parent=MsG0780038983.01;Name=MsG0780038983.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0|0|2|0|168 |
| Chr7 | exon | 56346169 | 56346529 | 56346169 | ID=MsG0780038983.01.T01:exon:7943;Parent=MsG0780038983.01.T01 |
| Chr7 | CDS | 56346169 | 56346529 | 56346169 | ID=MsG0780038983.01.T01:cds;Parent=MsG0780038983.01.T01 |
| Chr7 | CDS | 56343699 | 56343844 | 56343699 | ID=MsG0780038983.01.T01:cds;Parent=MsG0780038983.01.T01 |
| Chr7 | mRNA | 56343699 | 56346517 | 56343699 | ID=MsG0780038983.01.T02;Parent=MsG0780038983.01;Name=MsG0780038983.01.T02;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0|0|2|0|164 |
| Chr7 | exon | 56346169 | 56346517 | 56346169 | ID=MsG0780038983.01.T02:exon:7945;Parent=MsG0780038983.01.T02 |
| Chr7 | CDS | 56346169 | 56346517 | 56346169 | ID=MsG0780038983.01.T02:cds;Parent=MsG0780038983.01.T02 |
| Chr7 | CDS | 56343699 | 56343844 | 56343699 | ID=MsG0780038983.01.T02:cds;Parent=MsG0780038983.01.T02 |
| Chr7 | mRNA | 56343699 | 56346484 | 56343699 | ID=MsG0780038983.01.T03;Parent=MsG0780038983.01;Name=MsG0780038983.01.T03;_AED=0.42;_eAED=0.43;_QI=0|0|0|1|0|0|2|0|153 |
| Chr7 | exon | 56346169 | 56346484 | 56346169 | ID=MsG0780038983.01.T03:exon:7946;Parent=MsG0780038983.01.T03 |
| Chr7 | CDS | 56346169 | 56346484 | 56346169 | ID=MsG0780038983.01.T03:cds;Parent=MsG0780038983.01.T03 |
| Chr7 | CDS | 56343699 | 56343844 | 56343699 | ID=MsG0780038983.01.T03:cds;Parent=MsG0780038983.01.T03 |
| Chr7 | mRNA | 56346128 | 56346541 | 56346128 | ID=MsG0780038983.01.T04;Parent=MsG0780038983.01;Name=MsG0780038983.01.T04;_AED=0.43;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|137 |
| Chr7 | exon | 56346128 | 56346541 | 56346128 | ID=MsG0780038983.01.T04:exon:7947;Parent=MsG0780038983.01.T04 |
| Chr7 | CDS | 56346128 | 56346541 | 56346128 | ID=MsG0780038983.01.T04:cds;Parent=MsG0780038983.01.T04 |
| Chr7 | mRNA | 56346128 | 56346490 | 56346128 | ID=MsG0780038983.01.T05;Parent=MsG0780038983.01;Name=MsG0780038983.01.T05;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|0|1|0|120 |
| Chr7 | exon | 56346128 | 56346490 | 56346128 | ID=MsG0780038983.01.T05:exon:7948;Parent=MsG0780038983.01.T05 |
| Chr7 | CDS | 56346128 | 56346490 | 56346128 | ID=MsG0780038983.01.T05:cds;Parent=MsG0780038983.01.T05 |
| Gene Sequence |
| Protein sequence |
