Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038985.01.T01 | XP_013449050.2 | 92.179 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 7.71E-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038985.01.T01 | A0A396H0Q3 | 92.179 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 3.68e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048633.01 | MsG0780038985.01 | 0.814853 | 1.246751e-51 | 8.459587e-49 |
| MsG0080048652.01 | MsG0780038985.01 | 0.830908 | 2.253051e-55 | 2.406972e-52 |
| MsG0080048889.01 | MsG0780038985.01 | 0.833030 | 6.739903e-56 | 7.668007e-53 |
| MsG0080048953.01 | MsG0780038985.01 | 0.809106 | 2.228771e-50 | 1.297071e-47 |
| MsG0080049066.01 | MsG0780038985.01 | -0.803437 | 3.488203e-49 | 1.752842e-46 |
| MsG0180001079.01 | MsG0780038985.01 | 0.808248 | 3.399849e-50 | 1.934377e-47 |
| MsG0180001503.01 | MsG0780038985.01 | 0.805190 | 1.504447e-49 | 7.908738e-47 |
| MsG0180002808.01 | MsG0780038985.01 | 0.824097 | 9.706355e-54 | 8.514163e-51 |
| MsG0180002935.01 | MsG0780038985.01 | 0.810594 | 1.066848e-50 | 6.457569e-48 |
| MsG0180003375.01 | MsG0780038985.01 | 0.837972 | 3.791505e-57 | 5.007069e-54 |
| MsG0180003484.01 | MsG0780038985.01 | 0.804362 | 2.240187e-49 | 1.152809e-46 |
| MsG0180003908.01 | MsG0780038985.01 | -0.816785 | 4.623552e-52 | 3.307494e-49 |
| MsG0180005353.01 | MsG0780038985.01 | 0.809873 | 1.525754e-50 | 9.061962e-48 |
| MsG0180005757.01 | MsG0780038985.01 | 0.821449 | 4.013512e-53 | 3.266181e-50 |
| MsG0280006381.01 | MsG0780038985.01 | -0.806412 | 8.329392e-50 | 4.517935e-47 |
| MsG0280011050.01 | MsG0780038985.01 | 0.802252 | 6.127525e-49 | 2.987428e-46 |
| MsG0280011269.01 | MsG0780038985.01 | 0.820341 | 7.218271e-53 | 5.696166e-50 |
| MsG0380012281.01 | MsG0780038985.01 | -0.804179 | 2.445520e-49 | 1.252545e-46 |
| MsG0380012913.01 | MsG0780038985.01 | 0.808993 | 2.356826e-50 | 1.367380e-47 |
| MsG0380012918.01 | MsG0780038985.01 | 0.806281 | 8.876483e-50 | 4.798690e-47 |
| MsG0380013226.01 | MsG0780038985.01 | 0.808147 | 3.572753e-50 | 2.027283e-47 |
| MsG0380013272.01 | MsG0780038985.01 | 0.818022 | 2.434308e-52 | 1.801368e-49 |
| MsG0380013843.01 | MsG0780038985.01 | 0.801356 | 9.358235e-49 | 4.460016e-46 |
| MsG0380014410.01 | MsG0780038985.01 | 0.811077 | 8.384255e-51 | 5.140731e-48 |
| MsG0380014734.01 | MsG0780038985.01 | 0.800175 | 1.630147e-48 | 7.539692e-46 |
| MsG0680030961.01 | MsG0780038985.01 | 0.806235 | 9.075876e-50 | 4.901023e-47 |
| MsG0680031464.01 | MsG0780038985.01 | 0.811753 | 5.978475e-51 | 3.731668e-48 |
| MsG0680032707.01 | MsG0780038985.01 | 0.807463 | 4.993733e-50 | 2.783309e-47 |
| MsG0480019666.01 | MsG0780038985.01 | 0.805359 | 1.387030e-49 | 7.323311e-47 |
| MsG0480019923.01 | MsG0780038985.01 | 0.803285 | 3.750007e-49 | 1.877005e-46 |
| MsG0480020722.01 | MsG0780038985.01 | 0.820363 | 7.134432e-53 | 5.633407e-50 |
| MsG0480020958.01 | MsG0780038985.01 | 0.834621 | 2.696670e-56 | 3.217653e-53 |
| MsG0480021226.01 | MsG0780038985.01 | 0.806228 | 9.107593e-50 | 4.917252e-47 |
| MsG0480022428.01 | MsG0780038985.01 | 0.829542 | 4.857353e-55 | 4.986194e-52 |
| MsG0480023067.01 | MsG0780038985.01 | 0.808577 | 2.892761e-50 | 1.660000e-47 |
| MsG0480023195.01 | MsG0780038985.01 | 0.823019 | 1.734809e-53 | 1.476264e-50 |
| MsG0480023322.01 | MsG0780038985.01 | 0.834344 | 3.164143e-56 | 3.744536e-53 |
| MsG0580024678.01 | MsG0780038985.01 | -0.805231 | 1.475353e-49 | 7.763840e-47 |
| MsG0580025023.01 | MsG0780038985.01 | 0.807741 | 4.359622e-50 | 2.447488e-47 |
| MsG0580025105.01 | MsG0780038985.01 | -0.800782 | 1.226002e-48 | 5.758446e-46 |
| MsG0580025117.01 | MsG0780038985.01 | 0.838798 | 2.322032e-57 | 3.144452e-54 |
| MsG0580025663.01 | MsG0780038985.01 | -0.806106 | 9.662901e-50 | 5.200604e-47 |
| MsG0380015752.01 | MsG0780038985.01 | -0.801046 | 1.082955e-48 | 5.121280e-46 |
| MsG0380016476.01 | MsG0780038985.01 | 0.812959 | 3.261329e-51 | 2.102152e-48 |
| MsG0580027036.01 | MsG0780038985.01 | 0.814230 | 1.712840e-51 | 1.142815e-48 |
| MsG0680030635.01 | MsG0780038985.01 | -0.803216 | 3.875461e-49 | 1.936409e-46 |
| MsG0280006485.01 | MsG0780038985.01 | 0.843107 | 1.716592e-58 | 2.657672e-55 |
| MsG0280007163.01 | MsG0780038985.01 | 0.806495 | 7.999963e-50 | 4.348500e-47 |
| MsG0280007291.01 | MsG0780038985.01 | -0.802888 | 4.529792e-49 | 2.244542e-46 |
| MsG0280007426.01 | MsG0780038985.01 | 0.805872 | 1.082385e-49 | 5.790735e-47 |
| MsG0280007678.01 | MsG0780038985.01 | 0.801504 | 8.729482e-49 | 4.175849e-46 |
| MsG0280007786.01 | MsG0780038985.01 | 0.839390 | 1.630989e-57 | 2.249165e-54 |
| MsG0280008328.01 | MsG0780038985.01 | 0.807412 | 5.118417e-50 | 2.849049e-47 |
| MsG0280008659.01 | MsG0780038985.01 | 0.808495 | 3.011754e-50 | 1.724622e-47 |
| MsG0280009398.01 | MsG0780038985.01 | 0.805572 | 1.251499e-49 | 6.643732e-47 |
| MsG0280009742.01 | MsG0780038985.01 | -0.802502 | 5.441311e-49 | 2.669773e-46 |
| MsG0280010296.01 | MsG0780038985.01 | 0.803774 | 2.968590e-49 | 1.504726e-46 |
| MsG0780036890.01 | MsG0780038985.01 | 0.826060 | 3.336490e-54 | 3.095535e-51 |
| MsG0780037751.01 | MsG0780038985.01 | 0.815069 | 1.116317e-51 | 7.618979e-49 |
| MsG0780038305.01 | MsG0780038985.01 | 0.839042 | 2.007290e-57 | 2.738418e-54 |
| MsG0780038307.01 | MsG0780038985.01 | 0.815513 | 8.895710e-52 | 6.146032e-49 |
| MsG0780038983.01 | MsG0780038985.01 | 0.908406 | 1.770734e-81 | 3.281880e-77 |
| MsG0780038985.01 | MsG0780039431.01 | 0.806130 | 9.552714e-50 | 5.144408e-47 |
| MsG0780038985.01 | MsG0780039914.01 | 0.801463 | 8.897470e-49 | 4.251781e-46 |
| MsG0780038985.01 | MsG0780039923.01 | 0.807445 | 5.036437e-50 | 2.805746e-47 |
| MsG0780038985.01 | MsG0780039925.01 | 0.808323 | 3.277117e-50 | 1.868218e-47 |
| MsG0780038985.01 | MsG0780040977.01 | 0.832199 | 1.083050e-55 | 1.201964e-52 |
| MsG0780038985.01 | MsG0780040991.01 | 0.800803 | 1.213985e-48 | 5.705201e-46 |
| MsG0780038985.01 | MsG0780041079.01 | 0.833671 | 4.663658e-56 | 5.408212e-53 |
| MsG0780038985.01 | MsG0780041100.01 | 0.804671 | 1.931067e-49 | 1.001678e-46 |
| MsG0780038985.01 | MsG0780041225.01 | 0.820313 | 7.325853e-53 | 5.776550e-50 |
| MsG0780038985.01 | MsG0780041531.01 | -0.827781 | 1.294200e-54 | 1.261861e-51 |
| MsG0780038985.01 | MsG0780041783.01 | -0.807351 | 5.275018e-50 | 2.931429e-47 |
| MsG0780038985.01 | MsG0880042122.01 | 0.805422 | 1.344921e-49 | 7.112438e-47 |
| MsG0780038985.01 | MsG0880043134.01 | 0.802774 | 4.781813e-49 | 2.362640e-46 |
| MsG0780038985.01 | MsG0880043261.01 | 0.837437 | 5.201547e-57 | 6.756368e-54 |
| MsG0780038985.01 | MsG0880043550.01 | 0.810215 | 1.287929e-50 | 7.717556e-48 |
| MsG0780038985.01 | MsG0880043989.01 | 0.805852 | 1.092704e-49 | 5.843180e-47 |
| MsG0780038985.01 | MsG0880045804.01 | 0.829576 | 4.764363e-55 | 4.895736e-52 |
| MsG0780038985.01 | MsG0880045968.01 | -0.800229 | 1.589599e-48 | 7.362389e-46 |
| MsG0780038985.01 | MsG0880046174.01 | -0.822800 | 1.951357e-53 | 1.650182e-50 |
| MsG0780038985.01 | MsG0880046463.01 | 0.810203 | 1.295539e-50 | 7.760899e-48 |
| MsG0780038985.01 | MsG0880046838.01 | -0.814134 | 1.798377e-51 | 1.196786e-48 |
| MsG0780038985.01 | MsG0880047493.01 | 0.855908 | 4.599285e-62 | 1.078577e-58 |
| MsG0780038985.01 | MsG0880047697.01 | 0.804277 | 2.333655e-49 | 1.198263e-46 |
| MsG0780038985.01 | MsG0880047714.01 | 0.823214 | 1.562148e-53 | 1.336578e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038985.01.T01 | MTR_7g066110 | 92.308 | 169 | 13 | 0 | 11 | 179 | 1 | 169 | 2.89e-116 | 327 |
| MsG0780038985.01.T01 | MTR_4g018860 | 71.598 | 169 | 48 | 0 | 1 | 169 | 1 | 169 | 1.33e-87 | 256 |
| MsG0780038985.01.T01 | MTR_4g018880 | 68.539 | 178 | 56 | 0 | 1 | 178 | 1 | 178 | 5.48e-84 | 246 |
| MsG0780038985.01.T01 | MTR_4g018850 | 68.508 | 181 | 55 | 1 | 1 | 179 | 1 | 181 | 2.42e-79 | 235 |
| MsG0780038985.01.T01 | MTR_4g018880 | 70.455 | 132 | 39 | 0 | 1 | 132 | 1 | 132 | 3.03e-62 | 189 |
| MsG0780038985.01.T01 | MTR_6g452730 | 47.953 | 171 | 85 | 2 | 7 | 176 | 4 | 171 | 2.82e-54 | 171 |
| MsG0780038985.01.T01 | MTR_1g101120 | 51.923 | 156 | 74 | 1 | 12 | 166 | 15 | 170 | 2.88e-54 | 171 |
| MsG0780038985.01.T01 | MTR_7g066090 | 81.579 | 76 | 14 | 0 | 1 | 76 | 1 | 76 | 1.37e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038985.01.T01 | AT3G54040 | 57.778 | 180 | 70 | 4 | 1 | 178 | 1 | 176 | 4.11e-68 | 206 |
| MsG0780038985.01.T01 | AT3G54040 | 60.355 | 169 | 61 | 4 | 1 | 167 | 57 | 221 | 1.89e-67 | 206 |
| MsG0780038985.01.T01 | AT5G52390 | 45.251 | 179 | 97 | 1 | 1 | 178 | 1 | 179 | 1.34e-52 | 166 |
Find 45 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATATTGGGGCAATTT+TGG | 0.141377 | 7:+56416363 | None:intergenic |
| TGTTGACCTTTACTTCAATT+TGG | 0.213939 | 7:-56416345 | MsG0780038985.01.T01:CDS |
| GAGCATAATCAAAGGTAATT+TGG | 0.227054 | 7:+56416802 | None:intergenic |
| CGAAGGATGCATGGATAAAA+AGG | 0.255435 | 7:+56416771 | None:intergenic |
| GAAGTAAAGGTCAACAATAT+TGG | 0.286026 | 7:+56416352 | None:intergenic |
| AAGTAAAGGTCAACAATATT+GGG | 0.297379 | 7:+56416353 | None:intergenic |
| CTTTACTTCAATTTGGCTGC+TGG | 0.332953 | 7:-56416338 | MsG0780038985.01.T01:CDS |
| TCTTTCTCAATAGCTTCTTC+AGG | 0.363584 | 7:-56416599 | MsG0780038985.01.T01:CDS |
| GTGAGCTCTGGAGCTGCACC+TGG | 0.378232 | 7:-56415725 | MsG0780038985.01.T01:CDS |
| CTTAGGATACTTTGTTTACA+TGG | 0.379493 | 7:+56415652 | None:intergenic |
| TCTTGTGACAGAGCAGAAAC+AGG | 0.399775 | 7:+56415701 | None:intergenic |
| TTCAGGAAAACGGTGTTTGT+TGG | 0.405418 | 7:-56416582 | MsG0780038985.01.T01:CDS |
| ATGATCGAGCTTGTGAGCTC+TGG | 0.439225 | 7:-56415737 | MsG0780038985.01.T01:CDS |
| TTCAATTTGGCTGCTGGGGA+AGG | 0.450339 | 7:-56416332 | MsG0780038985.01.T01:intron |
| TTTACTTCAATTTGGCTGCT+GGG | 0.473999 | 7:-56416337 | MsG0780038985.01.T01:CDS |
| CAATAGCTTCTTCAGGAAAA+CGG | 0.477557 | 7:-56416592 | MsG0780038985.01.T01:CDS |
| AGAAGTAGTGGTGGAGCAAA+TGG | 0.478800 | 7:-56416510 | MsG0780038985.01.T01:CDS |
| TACTTTGTTTACATGGGAGA+AGG | 0.498445 | 7:+56415659 | None:intergenic |
| CAGCAGCCAAATTGAAGTAA+AGG | 0.504408 | 7:+56416339 | None:intergenic |
| GACAGAGCAGAAACAGGGCC+AGG | 0.529854 | 7:+56415707 | None:intergenic |
| TTAGGATACTTTGTTTACAT+GGG | 0.551833 | 7:+56415653 | None:intergenic |
| ACTTTGTTTACATGGGAGAA+GGG | 0.558007 | 7:+56415660 | None:intergenic |
| GCTCGATCATAGCGCGATGA+GGG | 0.572009 | 7:+56415750 | None:intergenic |
| CTTTGTTTACATGGGAGAAG+GGG | 0.572016 | 7:+56415661 | None:intergenic |
| ACAGAGAAGGCAGCGGATGG+TGG | 0.581266 | 7:-56416557 | MsG0780038985.01.T01:CDS |
| GTAGTGGTGGAGCAAATGGC+GGG | 0.589388 | 7:-56416506 | MsG0780038985.01.T01:CDS |
| GTGTTTGTTGGAGACAGAGA+AGG | 0.593902 | 7:-56416570 | MsG0780038985.01.T01:CDS |
| TTACTTCAATTTGGCTGCTG+GGG | 0.597417 | 7:-56416336 | MsG0780038985.01.T01:CDS |
| GATCATAGCGCGATGAGGGT+CGG | 0.606329 | 7:+56415754 | None:intergenic |
| ATGTAGGACATCAGAAGTAG+TGG | 0.608155 | 7:-56416522 | MsG0780038985.01.T01:CDS |
| TGTGTGTACCGAAGGATGCA+TGG | 0.608900 | 7:+56416762 | None:intergenic |
| CTACTTCTGATGTCCTACAT+TGG | 0.613644 | 7:+56416525 | None:intergenic |
| GAGACAGAGAAGGCAGCGGA+TGG | 0.613801 | 7:-56416560 | MsG0780038985.01.T01:CDS |
| AGCTCGATCATAGCGCGATG+AGG | 0.614616 | 7:+56415749 | None:intergenic |
| AGTAGTGGTGGAGCAAATGG+CGG | 0.620474 | 7:-56416507 | MsG0780038985.01.T01:CDS |
| TGTGTGTGAGGAGTTGCAAA+AGG | 0.620931 | 7:-56416630 | MsG0780038985.01.T01:CDS |
| GTTGGAGACAGAGAAGGCAG+CGG | 0.628566 | 7:-56416564 | MsG0780038985.01.T01:CDS |
| GAACACAAGAGCATAATCAA+AGG | 0.628881 | 7:+56416794 | None:intergenic |
| TAGGACATCAGAAGTAGTGG+TGG | 0.629632 | 7:-56416519 | MsG0780038985.01.T01:CDS |
| CTTGTGACAGAGCAGAAACA+GGG | 0.634654 | 7:+56415702 | None:intergenic |
| AGTAAAGGTCAACAATATTG+GGG | 0.636729 | 7:+56416354 | None:intergenic |
| GTGGCGTCGAGTACCAATGT+AGG | 0.640711 | 7:-56416538 | MsG0780038985.01.T01:CDS |
| GATCAATGTGTGAATGCTTG+CGG | 0.665620 | 7:-56416470 | MsG0780038985.01.T01:CDS |
| GACAGCTGAAGTTGTGTGTG+AGG | 0.677896 | 7:-56416642 | MsG0780038985.01.T01:intron |
| TGAATGCTTGCGGAGTTGAG+AGG | 0.714850 | 7:-56416460 | MsG0780038985.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATAAATAAATTGCAT+AGG | + | Chr7:56415791-56415810 | None:intergenic | 10.0% |
| !! | AACAAAAAATAAAACAAAGA+AGG | - | Chr7:56416569-56416588 | MsG0780038985.01.T01:CDS | 15.0% |
| !! | TAACTTCAAATTTAATCAAA+GGG | - | Chr7:56416524-56416543 | MsG0780038985.01.T01:CDS | 15.0% |
| !! | TTAACTTCAAATTTAATCAA+AGG | - | Chr7:56416523-56416542 | MsG0780038985.01.T01:CDS | 15.0% |
| !! | TTTGAACAATTCAAATAATT+GGG | - | Chr7:56416267-56416286 | MsG0780038985.01.T01:intron | 15.0% |
| !!! | TTTTGAACAATTCAAATAAT+TGG | - | Chr7:56416266-56416285 | MsG0780038985.01.T01:intron | 15.0% |
| !! | AAGTAATTAAGACAAAAAGA+AGG | + | Chr7:56416365-56416384 | None:intergenic | 20.0% |
| !! | CTCTCTTGATATTATAATAA+AGG | - | Chr7:56416644-56416663 | MsG0780038985.01.T01:intron | 20.0% |
| !! | TAATTGGAAAATATATAGCA+GGG | + | Chr7:56415757-56415776 | None:intergenic | 20.0% |
| !!! | TTCTTTTTGTCTTAATTACT+TGG | - | Chr7:56416364-56416383 | MsG0780038985.01.T01:CDS | 20.0% |
| ! | AAGTAAAGGTCAACAATATT+GGG | + | Chr7:56416132-56416151 | None:intergenic | 25.0% |
| ! | ATAGGTAACTAGATAGTAAT+TGG | + | Chr7:56415773-56415792 | None:intergenic | 25.0% |
| ! | ATCTTCATGCATAATAGTTA+TGG | + | Chr7:56416197-56416216 | None:intergenic | 25.0% |
| ! | CTGTTCAAAATAAGATGAAA+AGG | + | Chr7:56416332-56416351 | None:intergenic | 25.0% |
| ! | GTAATTGGAAAATATATAGC+AGG | + | Chr7:56415758-56415777 | None:intergenic | 25.0% |
| ! | GTTAAAATGTTAGATCATGA+CGG | + | Chr7:56416508-56416527 | None:intergenic | 25.0% |
| !! | TTTTTGTCTTAATTACTTGG+TGG | - | Chr7:56416367-56416386 | MsG0780038985.01.T01:CDS | 25.0% |
| ACTATTATGCATGAAGATCA+TGG | - | Chr7:56416199-56416218 | MsG0780038985.01.T01:intron | 30.0% | |
| AGTAAAGGTCAACAATATTG+GGG | + | Chr7:56416131-56416150 | None:intergenic | 30.0% | |
| GAAGTAAAGGTCAACAATAT+TGG | + | Chr7:56416133-56416152 | None:intergenic | 30.0% | |
| GAGCATAATCAAAGGTAATT+TGG | + | Chr7:56415683-56415702 | None:intergenic | 30.0% | |
| TGTTGACCTTTACTTCAATT+TGG | - | Chr7:56416137-56416156 | MsG0780038985.01.T01:intron | 30.0% | |
| AATTGGGTCATAGTGATTTG+TGG | - | Chr7:56416283-56416302 | MsG0780038985.01.T01:intron | 35.0% | |
| CAATAGCTTCTTCAGGAAAA+CGG | - | Chr7:56415890-56415909 | MsG0780038985.01.T01:intron | 35.0% | |
| CTTTGATACTATGCAAATGC+AGG | - | Chr7:56416670-56416689 | MsG0780038985.01.T01:intron | 35.0% | |
| GAAGGATGCATGGATAAAAA+GGG | + | Chr7:56415713-56415732 | None:intergenic | 35.0% | |
| TCTTTCTCAATAGCTTCTTC+AGG | - | Chr7:56415883-56415902 | MsG0780038985.01.T01:intron | 35.0% | |
| TTTACTTCAATTTGGCTGCT+GGG | - | Chr7:56416145-56416164 | MsG0780038985.01.T01:intron | 35.0% | |
| ! | CAACAATATTGGGGCAATTT+TGG | + | Chr7:56416122-56416141 | None:intergenic | 35.0% |
| ! | CTTTTTATCCATGCATCCTT+CGG | - | Chr7:56415712-56415731 | MsG0780038985.01.T01:CDS | 35.0% |
| ! | GAACACAAGAGCATAATCAA+AGG | + | Chr7:56415691-56415710 | None:intergenic | 35.0% |
| ! | GAAGGTTCTTTTCTTGTAGA+AGG | - | Chr7:56416587-56416606 | MsG0780038985.01.T01:CDS | 35.0% |
| !! | CAAAGTTTTGCTGTGAATTG+TGG | + | Chr7:56416084-56416103 | None:intergenic | 35.0% |
| ATGTAGGACATCAGAAGTAG+TGG | - | Chr7:56415960-56415979 | MsG0780038985.01.T01:intron | 40.0% | |
| CAGCAGCCAAATTGAAGTAA+AGG | + | Chr7:56416146-56416165 | None:intergenic | 40.0% | |
| CGAAGGATGCATGGATAAAA+AGG | + | Chr7:56415714-56415733 | None:intergenic | 40.0% | |
| CTACTTCTGATGTCCTACAT+TGG | + | Chr7:56415960-56415979 | None:intergenic | 40.0% | |
| CTTTACTTCAATTTGGCTGC+TGG | - | Chr7:56416144-56416163 | MsG0780038985.01.T01:intron | 40.0% | |
| GATCAATGTGTGAATGCTTG+CGG | - | Chr7:56416012-56416031 | MsG0780038985.01.T01:intron | 40.0% | |
| GTATATAGTGTGTGTACCGA+AGG | + | Chr7:56415731-56415750 | None:intergenic | 40.0% | |
| TTACTTCAATTTGGCTGCTG+GGG | - | Chr7:56416146-56416165 | MsG0780038985.01.T01:intron | 40.0% | |
| TTCAGGAAAACGGTGTTTGT+TGG | - | Chr7:56415900-56415919 | MsG0780038985.01.T01:intron | 40.0% | |
| ! | GGAGTTGAGAGGAATTTTGT+TGG | - | Chr7:56416033-56416052 | MsG0780038985.01.T01:intron | 40.0% |
| ! | TTTTGCATCTCACAAAGGTC+AGG | + | Chr7:56416706-56416725 | None:intergenic | 40.0% |
| CTTGTGACAGAGCAGAAACA+GGG | + | Chr7:56416783-56416802 | None:intergenic | 45.0% | |
| TAGGACATCAGAAGTAGTGG+TGG | - | Chr7:56415963-56415982 | MsG0780038985.01.T01:intron | 45.0% | |
| TCTTGTGACAGAGCAGAAAC+AGG | + | Chr7:56416784-56416803 | None:intergenic | 45.0% | |
| TGTGTGTGAGGAGTTGCAAA+AGG | - | Chr7:56415852-56415871 | MsG0780038985.01.T01:intron | 45.0% | |
| ! | AGAAGTAGTGGTGGAGCAAA+TGG | - | Chr7:56415972-56415991 | MsG0780038985.01.T01:intron | 45.0% |
| ! | CGGTCTTTTGCATCTCACAA+AGG | + | Chr7:56416711-56416730 | None:intergenic | 45.0% |
| ! | GTGTTTGTTGGAGACAGAGA+AGG | - | Chr7:56415912-56415931 | MsG0780038985.01.T01:intron | 45.0% |
| ATGATCGAGCTTGTGAGCTC+TGG | - | Chr7:56416745-56416764 | MsG0780038985.01.T01:intron | 50.0% | |
| GACAGCTGAAGTTGTGTGTG+AGG | - | Chr7:56415840-56415859 | MsG0780038985.01.T01:intron | 50.0% | |
| TGAATGCTTGCGGAGTTGAG+AGG | - | Chr7:56416022-56416041 | MsG0780038985.01.T01:intron | 50.0% | |
| TGTGTGTACCGAAGGATGCA+TGG | + | Chr7:56415723-56415742 | None:intergenic | 50.0% | |
| TTCAATTTGGCTGCTGGGGA+AGG | - | Chr7:56416150-56416169 | MsG0780038985.01.T01:intron | 50.0% | |
| ! | AGTAGTGGTGGAGCAAATGG+CGG | - | Chr7:56415975-56415994 | MsG0780038985.01.T01:intron | 50.0% |
| AGCTCGATCATAGCGCGATG+AGG | + | Chr7:56416736-56416755 | None:intergenic | 55.0% | |
| GATCATAGCGCGATGAGGGT+CGG | + | Chr7:56416731-56416750 | None:intergenic | 55.0% | |
| GCTCGATCATAGCGCGATGA+GGG | + | Chr7:56416735-56416754 | None:intergenic | 55.0% | |
| GTTGGAGACAGAGAAGGCAG+CGG | - | Chr7:56415918-56415937 | MsG0780038985.01.T01:intron | 55.0% | |
| ! | GTAGTGGTGGAGCAAATGGC+GGG | - | Chr7:56415976-56415995 | MsG0780038985.01.T01:intron | 55.0% |
| ! | GTGGCGTCGAGTACCAATGT+AGG | - | Chr7:56415944-56415963 | MsG0780038985.01.T01:intron | 55.0% |
| ACAGAGAAGGCAGCGGATGG+TGG | - | Chr7:56415925-56415944 | MsG0780038985.01.T01:intron | 60.0% | |
| GACAGAGCAGAAACAGGGCC+AGG | + | Chr7:56416778-56416797 | None:intergenic | 60.0% | |
| GAGACAGAGAAGGCAGCGGA+TGG | - | Chr7:56415922-56415941 | MsG0780038985.01.T01:intron | 60.0% | |
| !! | GTGAGCTCTGGAGCTGCACC+TGG | - | Chr7:56416757-56416776 | MsG0780038985.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 56415667 | 56416837 | 56415667 | ID=MsG0780038985.01;Name=MsG0780038985.01 |
| Chr7 | mRNA | 56415667 | 56416837 | 56415667 | ID=MsG0780038985.01.T01;Parent=MsG0780038985.01;Name=MsG0780038985.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|179 |
| Chr7 | exon | 56416771 | 56416837 | 56416771 | ID=MsG0780038985.01.T01:exon:6397;Parent=MsG0780038985.01.T01 |
| Chr7 | exon | 56416333 | 56416659 | 56416333 | ID=MsG0780038985.01.T01:exon:6396;Parent=MsG0780038985.01.T01 |
| Chr7 | exon | 56415667 | 56415812 | 56415667 | ID=MsG0780038985.01.T01:exon:6395;Parent=MsG0780038985.01.T01 |
| Chr7 | CDS | 56416771 | 56416837 | 56416771 | ID=MsG0780038985.01.T01:cds;Parent=MsG0780038985.01.T01 |
| Chr7 | CDS | 56416333 | 56416659 | 56416333 | ID=MsG0780038985.01.T01:cds;Parent=MsG0780038985.01.T01 |
| Chr7 | CDS | 56415667 | 56415812 | 56415667 | ID=MsG0780038985.01.T01:cds;Parent=MsG0780038985.01.T01 |
| Gene Sequence |
| Protein sequence |
