AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041249.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041249.01.T01 MTR_7g107560 97.717 438 7 1 1 438 1 435 0.0 877
MsG0780041249.01.T01 MTR_1g089500 64.444 450 99 10 40 438 44 483 0.0 540
MsG0780041249.01.T01 MTR_8g026680 67.766 273 80 3 35 307 87 351 1.55e-131 388
MsG0780041249.01.T01 MTR_7g104900 64.158 279 95 1 30 308 69 342 8.18e-126 373
MsG0780041249.01.T01 MTR_4g052850 64.286 266 86 1 28 293 66 322 5.39e-124 364
MsG0780041249.01.T01 MTR_2g086580 49.757 412 176 8 35 429 50 447 2.16e-120 358
MsG0780041249.01.T01 MTR_7g081615 88.125 160 17 1 102 261 14 171 4.31e-96 286
MsG0780041249.01.T01 MTR_5g064420 61.635 159 57 1 97 255 41 195 3.16e-63 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041249.01.T01 AT4G03100 66.479 355 92 4 30 358 39 392 1.52e-161 462
MsG0780041249.01.T01 AT2G46710 67.586 290 86 5 35 320 77 362 3.37e-135 396
MsG0780041249.01.T01 AT5G22400 64.437 284 95 2 29 312 87 364 2.23e-129 382
MsG0780041249.01.T01 AT3G11490 60.606 297 107 3 35 327 69 359 2.25e-122 363
MsG0780041249.01.T01 AT1G08340 63.673 245 89 0 63 307 1 245 2.21e-113 336

Find 97 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATAGTTTAGTATATT+TGG 0.064059 7:-88785023 None:intergenic
TTGAATCAGCTTTGCTTAAT+TGG 0.091752 7:+88783678 MsG0780041249.01.T01:CDS
GTGCTTGTTAATCTATTCTT+AGG 0.184145 7:+88785081 MsG0780041249.01.T01:three_prime_UTR
TCCAAATATACTAAACTATT+TGG 0.186491 7:+88785022 MsG0780041249.01.T01:three_prime_UTR
TAATTGGGCTGTTGATCTTA+TGG 0.232844 7:+88783694 MsG0780041249.01.T01:CDS
GCTTAATTAAAGCATGGTTT+AGG 0.267143 7:+88783555 MsG0780041249.01.T01:CDS
AAGCATACCTGAGTCATATT+TGG 0.279990 7:-88783782 None:intergenic
CTTAATTAAAGCATGGTTTA+GGG 0.299820 7:+88783556 MsG0780041249.01.T01:CDS
TGTCGAGCCGTTTCTATAAC+TGG 0.304547 7:-88784707 None:intergenic
TTTCGTATAAATCCAGAAAA+TGG 0.307758 7:+88783458 MsG0780041249.01.T01:CDS
GTGTCTTTACTTTCTATTGA+TGG 0.311575 7:-88784763 None:intergenic
TGAAGAGGATTATAACAAAA+TGG 0.341839 7:+88783730 MsG0780041249.01.T01:CDS
AGAATGCTTCTTAGAACAAT+TGG 0.343443 7:+88784585 MsG0780041249.01.T01:CDS
CTTCCTTCAGGAGTGTTAGA+TGG 0.358229 7:+88783581 MsG0780041249.01.T01:CDS
AATTGCAGTGTTAGTGTGTT+TGG 0.363248 7:+88783215 MsG0780041249.01.T01:intron
CTTGTGTATACTTGATTAGT+AGG 0.370251 7:+88784930 MsG0780041249.01.T01:three_prime_UTR
CTAACATGCTTAACATTTGT+AGG 0.376675 7:-88782355 None:intergenic
TGAATCAGCTTTGCTTAATT+GGG 0.382771 7:+88783679 MsG0780041249.01.T01:CDS
AATTTGAGCTTCTTGTTGTC+AGG 0.386910 7:+88784857 MsG0780041249.01.T01:three_prime_UTR
TGGTTTAGGGAACTTCCTTC+AGG 0.390002 7:+88783569 MsG0780041249.01.T01:CDS
ATCTACCATCTCCACATCAT+TGG 0.394673 7:-88784785 None:intergenic
GAAGAGGAAGCAGAGACGGC+GGG 0.403827 7:+88782212 MsG0780041249.01.T01:CDS
CAGACAGGAATCCTCAGTTT+TGG 0.410752 7:-88784680 None:intergenic
TTAAGCAAAGCTGATTCAAC+TGG 0.417940 7:-88783674 None:intergenic
ATTGATGTACATTGCTTAGC+TGG 0.420002 7:+88783533 MsG0780041249.01.T01:CDS
TTTGGACACATAACATAATC+AGG 0.421537 7:-88785005 None:intergenic
CAATGTACATCAATGTCATT+TGG 0.423776 7:-88783524 None:intergenic
GTGAGTGGTGGATGCGGTGG+TGG 0.428914 7:+88782172 MsG0780041249.01.T01:CDS
TGCTTGTTAATCTATTCTTA+GGG 0.431102 7:+88785082 MsG0780041249.01.T01:three_prime_UTR
TCTTCTTGCAAATGCTCTGC+AGG 0.433059 7:-88784643 None:intergenic
ATTAGCTACGAATTTCATCT+AGG 0.433903 7:+88785049 MsG0780041249.01.T01:three_prime_UTR
CAATGTTCTTATGATTCAAA+AGG 0.438953 7:+88783257 MsG0780041249.01.T01:CDS
CTGCATTAGTAACAGAATAG+TGG 0.443345 7:-88783291 None:intergenic
CTGCTGTTGCTGTTTCTTCG+CGG 0.447979 7:-88784405 None:intergenic
AGAAGAGGAAGCAGAGACGG+CGG 0.455159 7:+88782211 MsG0780041249.01.T01:CDS
CACTATTCTGTTACTAATGC+AGG 0.459853 7:+88783292 MsG0780041249.01.T01:CDS
GTTCATCATCCAATGGAGAT+TGG 0.485515 7:+88782328 MsG0780041249.01.T01:CDS
TTGAGGGAGCAATTGAATAG+TGG 0.488849 7:+88783494 MsG0780041249.01.T01:CDS
AGGTACCTAGCACTAGGAAC+AGG 0.489014 7:-88782448 None:intergenic
TCTATAACTGGAACTCAGAC+AGG 0.498474 7:-88784695 None:intergenic
TGCATTAGTAACAGAATAGT+GGG 0.498479 7:-88783290 None:intergenic
GGAAGAAGAGGAAGCAGAGA+CGG 0.498925 7:+88782208 MsG0780041249.01.T01:CDS
GCAGGAGAGGTTATACTCAC+AGG 0.501375 7:+88783310 MsG0780041249.01.T01:CDS
GCATGCATTAGAGCAGTTAG+TGG 0.503772 7:-88784331 None:intergenic
TTGCATTCAAGAACTTCCTC+AGG 0.507388 7:-88783611 None:intergenic
CTGCTCCTGTTCCTAGTGCT+AGG 0.511600 7:+88782443 MsG0780041249.01.T01:CDS
ATTATAACAAAATGGATGCT+AGG 0.516074 7:+88783738 MsG0780041249.01.T01:CDS
AGTAGTGTGAAGGGAAGAAG+AGG 0.521967 7:+88782196 MsG0780041249.01.T01:CDS
TGGTGAAGAGGAACATTTGA+GGG 0.526583 7:+88783478 MsG0780041249.01.T01:CDS
GCAGCTAACATTAACGCTGC+TGG 0.527383 7:-88782247 None:intergenic
GTAGGCCATCCAATCTCCAT+TGG 0.529727 7:-88782337 None:intergenic
ATACTCACAGGGAGGACTAA+AGG 0.532224 7:+88783322 MsG0780041249.01.T01:CDS
CATCCACCACTCACCATCAC+TGG 0.532322 7:-88782163 None:intergenic
CTGAGTTCCAGTTATAGAAA+CGG 0.539389 7:+88784700 MsG0780041249.01.T01:CDS
ATGCAGCTTCTTCACTGTTG+TGG 0.541316 7:-88784543 None:intergenic
AGCTGCTTTGAAGAAATCAA+TGG 0.544551 7:+88782264 MsG0780041249.01.T01:CDS
ATCATCCAATGGAGATTGGA+TGG 0.548029 7:+88782332 MsG0780041249.01.T01:CDS
ACGGCGGAGATTACATCGTC+AGG 0.549741 7:-88782307 None:intergenic
ATGATCATCATAATCTAACT+TGG 0.553962 7:-88784509 None:intergenic
TTCTGTTACTAATGCAGGAG+AGG 0.557243 7:+88783297 MsG0780041249.01.T01:CDS
GGATGCTAGGAATATTGCTA+TGG 0.560041 7:+88783751 MsG0780041249.01.T01:CDS
GAAGATGAGAGGACCAGTGA+TGG 0.565192 7:+88782150 MsG0780041249.01.T01:exon
TAGCTGGCTTAATTAAAGCA+TGG 0.565313 7:+88783549 MsG0780041249.01.T01:CDS
CGGTGGTGGTAGTAGTGTGA+AGG 0.570136 7:+88782186 MsG0780041249.01.T01:CDS
GGCTGATGTTGTAGTTGAAG+AGG 0.571255 7:+88783715 MsG0780041249.01.T01:CDS
AAATCCAGAAAATGGTGAAG+AGG 0.577700 7:+88783466 MsG0780041249.01.T01:CDS
ACATGAACTTCAAGCTCAAG+AGG 0.579188 7:-88782418 None:intergenic
AGACACCAATGATGTGGAGA+TGG 0.581128 7:+88784780 MsG0780041249.01.T01:CDS
TAAAACGATCAAACGTGACA+TGG 0.583384 7:-88782378 None:intergenic
ATGGTGAAGAGGAACATTTG+AGG 0.585254 7:+88783477 MsG0780041249.01.T01:CDS
ATGGTGAGTGGTGGATGCGG+TGG 0.589261 7:+88782169 MsG0780041249.01.T01:CDS
CTCCGCCGTTCATCATCCAA+TGG 0.590362 7:+88782321 MsG0780041249.01.T01:CDS
ATAAGAAGATAGTGTTTGTG+TGG 0.594668 7:+88782123 MsG0780041249.01.T01:five_prime_UTR
CTAGCACTAGGAACAGGAGC+AGG 0.596477 7:-88782442 None:intergenic
AAGTAAAGACACCAATGATG+TGG 0.596557 7:+88784774 MsG0780041249.01.T01:CDS
AGTCCATCTAACACTCCTGA+AGG 0.599306 7:-88783584 None:intergenic
CAGGAGAGGTTATACTCACA+GGG 0.599702 7:+88783311 MsG0780041249.01.T01:CDS
ATCTGATGAATGAGATGACA+TGG 0.603264 7:-88784437 None:intergenic
AAAGTAAGGTACCTAGCACT+AGG 0.611243 7:-88782454 None:intergenic
TCTTAATTAGATGCAAACAA+AGG 0.614596 7:-88784835 None:intergenic
AACGGCTCGACAACAACTGA+GGG 0.615985 7:+88784718 MsG0780041249.01.T01:CDS
AATCTCCATTGGATGATGAA+CGG 0.625225 7:-88782326 None:intergenic
ATCAATGGTTGCTTGTAGTG+TGG 0.627262 7:+88782279 MsG0780041249.01.T01:CDS
GTGATGGTGAGTGGTGGATG+CGG 0.627794 7:+88782166 MsG0780041249.01.T01:CDS
AAGAGGAAGCAGAGACGGCG+GGG 0.629048 7:+88782213 MsG0780041249.01.T01:CDS
AAACGGCTCGACAACAACTG+AGG 0.661142 7:+88784717 MsG0780041249.01.T01:CDS
CAACAAGAAATGTATACTAG+CGG 0.664805 7:+88784472 MsG0780041249.01.T01:CDS
GGACCAGTGATGGTGAGTGG+TGG 0.667309 7:+88782160 MsG0780041249.01.T01:CDS
GGTGGTGGTAGTAGTGTGAA+GGG 0.668108 7:+88782187 MsG0780041249.01.T01:CDS
CTCCATTGGATGATGAACGG+CGG 0.679903 7:-88782323 None:intergenic
GTTAGATGGACTTTCACCTG+AGG 0.686418 7:+88783595 MsG0780041249.01.T01:CDS
AGAGAGTCCTACCAAAACTG+AGG 0.688445 7:+88784669 MsG0780041249.01.T01:CDS
ACTAACTGCTCTAATGCATG+CGG 0.693394 7:+88784333 MsG0780041249.01.T01:CDS
AGAGGACCAGTGATGGTGAG+TGG 0.694819 7:+88782157 MsG0780041249.01.T01:CDS
TGTGTGGAGAAGAAGATGAG+AGG 0.729777 7:+88782139 MsG0780041249.01.T01:exon
GCATTAGTAACAGAATAGTG+GGG 0.751385 7:-88783289 None:intergenic
GAGAGGTTATACTCACAGGG+AGG 0.769530 7:+88783314 MsG0780041249.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAATGAAAAAAGA+GGG - Chr7:88783413-88783432 None:intergenic 10.0%
!! TAATTAAAAAATGAAAAAAG+AGG - Chr7:88783414-88783433 None:intergenic 10.0%
!!! AAAATTTTAATTATAGCAAT+TGG - Chr7:88783120-88783139 None:intergenic 10.0%
!!! CTAAAAAATTGAATTTTTTT+AGG + Chr7:88782718-88782737 MsG0780041249.01.T01:intron 10.0%
!!! TTTTTAATTAATGAATTTTC+AGG + Chr7:88783424-88783443 MsG0780041249.01.T01:intron 10.0%
!! AAATGAAAAAGAAAAAAGTA+AGG - Chr7:88782471-88782490 None:intergenic 15.0%
!! AGTAAAAGTTAGTAATTAAA+TGG + Chr7:88782879-88782898 MsG0780041249.01.T01:intron 15.0%
!!! AAATTTTGATTTTGAATTTG+AGG - Chr7:88782088-88782107 None:intergenic 15.0%
!! CAAAAACATTAAAACTTTAG+GGG - Chr7:88783995-88784014 None:intergenic 20.0%
!! GCAAAAACATTAAAACTTTA+GGG - Chr7:88783996-88784015 None:intergenic 20.0%
!! TCCAAATAGTTTAGTATATT+TGG - Chr7:88785026-88785045 None:intergenic 20.0%
!! TCCAAATATACTAAACTATT+TGG + Chr7:88785022-88785041 MsG0780041249.01.T01:three_prime_UTR 20.0%
!! TGCAAAAACATTAAAACTTT+AGG - Chr7:88783997-88784016 None:intergenic 20.0%
!!! AACTTTTCATCATCAAATAA+AGG - Chr7:88782935-88782954 None:intergenic 20.0%
!!! AGGGAAAAATATTTTATAGT+TGG - Chr7:88783394-88783413 None:intergenic 20.0%
!!! AGTTTCTTTGATTTAATGAT+TGG + Chr7:88783067-88783086 MsG0780041249.01.T01:intron 20.0%
!!! CATGATTTAATAATAGCTTT+TGG - Chr7:88783143-88783162 None:intergenic 20.0%
!!! GTTTCTTTGATTTAATGATT+GGG + Chr7:88783068-88783087 MsG0780041249.01.T01:intron 20.0%
!!! TTTTGTAGTAACATTTCAAT+GGG + Chr7:88782681-88782700 MsG0780041249.01.T01:intron 20.0%
! AAGAAACTTATTGTAAGTAG+TGG - Chr7:88783055-88783074 None:intergenic 25.0%
! AGATTGATTAAGCCTAAAAA+TGG + Chr7:88785112-88785131 MsG0780041249.01.T01:three_prime_UTR 25.0%
! ATCATTTACACACAAAAATG+TGG - Chr7:88784157-88784176 None:intergenic 25.0%
! ATGATCATCATAATCTAACT+TGG - Chr7:88784512-88784531 None:intergenic 25.0%
! ATGATGAAAAGTTTCCATAA+CGG + Chr7:88782942-88782961 MsG0780041249.01.T01:intron 25.0%
! ATTATAACAAAATGGATGCT+AGG + Chr7:88783738-88783757 MsG0780041249.01.T01:CDS 25.0%
! CAATGTTCTTATGATTCAAA+AGG + Chr7:88783257-88783276 MsG0780041249.01.T01:CDS 25.0%
! CTAAATTAGAAACCAACATT+TGG - Chr7:88782661-88782680 None:intergenic 25.0%
! CTTAATTAAAGCATGGTTTA+GGG + Chr7:88783556-88783575 MsG0780041249.01.T01:CDS 25.0%
! TCTTAATTAGATGCAAACAA+AGG - Chr7:88784838-88784857 None:intergenic 25.0%
! TGAAGAGGATTATAACAAAA+TGG + Chr7:88783730-88783749 MsG0780041249.01.T01:CDS 25.0%
! TTTCATATTATCCTTCAATG+AGG + Chr7:88782828-88782847 MsG0780041249.01.T01:intron 25.0%
! TTTCGTATAAATCCAGAAAA+TGG + Chr7:88783458-88783477 MsG0780041249.01.T01:CDS 25.0%
! TTTGTAGTAACATTTCAATG+GGG + Chr7:88782682-88782701 MsG0780041249.01.T01:intron 25.0%
!! AAACTCGAGATTTTACTTAA+GGG + Chr7:88782608-88782627 MsG0780041249.01.T01:intron 25.0%
!! CGTTCATGATCAAAATTTTA+TGG + Chr7:88785151-88785170 MsG0780041249.01.T01:three_prime_UTR 25.0%
!! GTTTTGTAGTAACATTTCAA+TGG + Chr7:88782680-88782699 MsG0780041249.01.T01:intron 25.0%
!! TGCTTGTTAATCTATTCTTA+GGG + Chr7:88785082-88785101 MsG0780041249.01.T01:three_prime_UTR 25.0%
!! TTAGGGTAAGATTTTATTGT+TGG + Chr7:88782736-88782755 MsG0780041249.01.T01:intron 25.0%
!! TTTTCAGTAAATTCATCACT+TGG - Chr7:88784360-88784379 None:intergenic 25.0%
!!! GAGTTTTTGATGTTTTTGTT+GGG - Chr7:88782063-88782082 None:intergenic 25.0%
!!! TAGTAGGTTTTTCTTGTTTT+TGG + Chr7:88784946-88784965 MsG0780041249.01.T01:three_prime_UTR 25.0%
!!! TGAGTTTTTGATGTTTTTGT+TGG - Chr7:88782064-88782083 None:intergenic 25.0%
AAAGGCAAATCTCAATAACT+TGG - Chr7:88782917-88782936 None:intergenic 30.0%
AACTGAAAAAACCTCATTGA+AGG - Chr7:88782842-88782861 None:intergenic 30.0%
AGAATGCTTCTTAGAACAAT+TGG + Chr7:88784585-88784604 MsG0780041249.01.T01:CDS 30.0%
AGAGCCTAATAAAATCATGT+GGG + Chr7:88783858-88783877 MsG0780041249.01.T01:intron 30.0%
ATAAGAAGATAGTGTTTGTG+TGG + Chr7:88782123-88782142 MsG0780041249.01.T01:five_prime_UTR 30.0%
ATTAGCTACGAATTTCATCT+AGG + Chr7:88785049-88785068 MsG0780041249.01.T01:three_prime_UTR 30.0%
CAACAAGAAATGTATACTAG+CGG + Chr7:88784472-88784491 MsG0780041249.01.T01:CDS 30.0%
CAATGTACATCAATGTCATT+TGG - Chr7:88783527-88783546 None:intergenic 30.0%
CATGCATGTGTAATATATAC+AGG - Chr7:88784236-88784255 None:intergenic 30.0%
CTAACATGCTTAACATTTGT+AGG - Chr7:88782358-88782377 None:intergenic 30.0%
CTTGTGTATACTTGATTAGT+AGG + Chr7:88784930-88784949 MsG0780041249.01.T01:three_prime_UTR 30.0%
GCATTAAGCATAATTTCGTT+TGG - Chr7:88784207-88784226 None:intergenic 30.0%
GCTTAATTAAAGCATGGTTT+AGG + Chr7:88783555-88783574 MsG0780041249.01.T01:CDS 30.0%
GTGTCTTTACTTTCTATTGA+TGG - Chr7:88784766-88784785 None:intergenic 30.0%
TCACAAATCACATCAGAATA+TGG - Chr7:88783187-88783206 None:intergenic 30.0%
TGAATCAGCTTTGCTTAATT+GGG + Chr7:88783679-88783698 MsG0780041249.01.T01:CDS 30.0%
TGCATTAGTAACAGAATAGT+GGG - Chr7:88783293-88783312 None:intergenic 30.0%
TTACTTAAGGGATCTAAATC+CGG + Chr7:88782620-88782639 MsG0780041249.01.T01:intron 30.0%
TTGAATCAGCTTTGCTTAAT+TGG + Chr7:88783678-88783697 MsG0780041249.01.T01:CDS 30.0%
TTGTAAGTAGTGGCATAAAA+CGG - Chr7:88783045-88783064 None:intergenic 30.0%
TTTGGACACATAACATAATC+AGG - Chr7:88785008-88785027 None:intergenic 30.0%
! ATTTTGTGTTTTGCAAGCAA+GGG + Chr7:88784904-88784923 MsG0780041249.01.T01:three_prime_UTR 30.0%
! CAAACTCGAGATTTTACTTA+AGG + Chr7:88782607-88782626 MsG0780041249.01.T01:intron 30.0%
! GTGCTTGTTAATCTATTCTT+AGG + Chr7:88785081-88785100 MsG0780041249.01.T01:three_prime_UTR 30.0%
! TATAGTTGGTTCACATAATC+TGG - Chr7:88783380-88783399 None:intergenic 30.0%
!! ACATAACTAGCACCATTTTT+AGG - Chr7:88785127-88785146 None:intergenic 30.0%
!! TCACGTTTGATCGTTTTAAT+GGG + Chr7:88782383-88782402 MsG0780041249.01.T01:CDS 30.0%
!! TTAATGAATTTTCAGGCTGA+AGG + Chr7:88783431-88783450 MsG0780041249.01.T01:intron 30.0%
!!! GATCGTTTTAATGGGTTTTT+GGG + Chr7:88782391-88782410 MsG0780041249.01.T01:CDS 30.0%
!!! TGATCGTTTTAATGGGTTTT+TGG + Chr7:88782390-88782409 MsG0780041249.01.T01:CDS 30.0%
!!! TTCAATGAGGTTTTTTCAGT+TGG + Chr7:88782841-88782860 MsG0780041249.01.T01:intron 30.0%
AAATCCAGAAAATGGTGAAG+AGG + Chr7:88783466-88783485 MsG0780041249.01.T01:CDS 35.0%
AAGCATACCTGAGTCATATT+TGG - Chr7:88783785-88783804 None:intergenic 35.0%
AAGTAAAGACACCAATGATG+TGG + Chr7:88784774-88784793 MsG0780041249.01.T01:CDS 35.0%
AATCTCCATTGGATGATGAA+CGG - Chr7:88782329-88782348 None:intergenic 35.0%
AATTGCAGTGTTAGTGTGTT+TGG + Chr7:88783215-88783234 MsG0780041249.01.T01:intron 35.0%
AGTTTCCATAACGGTAATGT+AGG + Chr7:88782951-88782970 MsG0780041249.01.T01:intron 35.0%
ATCTGATGAATGAGATGACA+TGG - Chr7:88784440-88784459 None:intergenic 35.0%
ATTGATGTACATTGCTTAGC+TGG + Chr7:88783533-88783552 MsG0780041249.01.T01:CDS 35.0%
CAAATCCTACATTACCGTTA+TGG - Chr7:88782959-88782978 None:intergenic 35.0%
CACTATTCTGTTACTAATGC+AGG + Chr7:88783292-88783311 MsG0780041249.01.T01:CDS 35.0%
CAGAGCCTAATAAAATCATG+TGG + Chr7:88783857-88783876 MsG0780041249.01.T01:intron 35.0%
CATTTGGACTAACCAAATGT+TGG + Chr7:88782646-88782665 MsG0780041249.01.T01:intron 35.0%
CTGAGTTCCAGTTATAGAAA+CGG + Chr7:88784700-88784719 MsG0780041249.01.T01:CDS 35.0%
CTGCATTAGTAACAGAATAG+TGG - Chr7:88783294-88783313 None:intergenic 35.0%
GCATAAAACATTCAAATCCG+AGG - Chr7:88783898-88783917 None:intergenic 35.0%
GCATTAGTAACAGAATAGTG+GGG - Chr7:88783292-88783311 None:intergenic 35.0%
TAAAACGATCAAACGTGACA+TGG - Chr7:88782381-88782400 None:intergenic 35.0%
TAATTGGGCTGTTGATCTTA+TGG + Chr7:88783694-88783713 MsG0780041249.01.T01:CDS 35.0%
TTACACACAAAAATGTGGAG+TGG - Chr7:88784152-88784171 None:intergenic 35.0%
! AATTTGAGCTTCTTGTTGTC+AGG + Chr7:88784857-88784876 MsG0780041249.01.T01:three_prime_UTR 35.0%
! CAACATTTGGTTAGTCCAAA+TGG - Chr7:88782648-88782667 None:intergenic 35.0%
! GATTTTGTGTTTTGCAAGCA+AGG + Chr7:88784903-88784922 MsG0780041249.01.T01:three_prime_UTR 35.0%
! GGATCCCACATGATTTTATT+AGG - Chr7:88783865-88783884 None:intergenic 35.0%
! GGGTAAGATTTTATTGTTGG+TGG + Chr7:88782739-88782758 MsG0780041249.01.T01:intron 35.0%
! GTCACGTTTGATCGTTTTAA+TGG + Chr7:88782382-88782401 MsG0780041249.01.T01:CDS 35.0%
! TAGCTGGCTTAATTAAAGCA+TGG + Chr7:88783549-88783568 MsG0780041249.01.T01:CDS 35.0%
! TTAAGCAAAGCTGATTCAAC+TGG - Chr7:88783677-88783696 None:intergenic 35.0%
! TTTTGCTCCAAATATGACTC+AGG + Chr7:88783775-88783794 MsG0780041249.01.T01:CDS 35.0%
! TTTTGTGTTTTGCAAGCAAG+GGG + Chr7:88784905-88784924 MsG0780041249.01.T01:three_prime_UTR 35.0%
!! AGCTGCTTTGAAGAAATCAA+TGG + Chr7:88782264-88782283 MsG0780041249.01.T01:CDS 35.0%
ACATGAACTTCAAGCTCAAG+AGG - Chr7:88782421-88782440 None:intergenic 40.0%
ACTAACTGCTCTAATGCATG+CGG + Chr7:88784333-88784352 MsG0780041249.01.T01:CDS 40.0%
ATCAATGGTTGCTTGTAGTG+TGG + Chr7:88782279-88782298 MsG0780041249.01.T01:CDS 40.0%
ATCATCCAATGGAGATTGGA+TGG + Chr7:88782332-88782351 MsG0780041249.01.T01:CDS 40.0%
ATCTACCATCTCCACATCAT+TGG - Chr7:88784788-88784807 None:intergenic 40.0%
ATCTTGTGACTTCACGTAGT+CGG - Chr7:88783938-88783957 None:intergenic 40.0%
ATGGTGAAGAGGAACATTTG+AGG + Chr7:88783477-88783496 MsG0780041249.01.T01:CDS 40.0%
GATCTAAATCCGGTTCCATT+TGG + Chr7:88782630-88782649 MsG0780041249.01.T01:intron 40.0%
GGATGCTAGGAATATTGCTA+TGG + Chr7:88783751-88783770 MsG0780041249.01.T01:CDS 40.0%
GTTCATCATCCAATGGAGAT+TGG + Chr7:88782328-88782347 MsG0780041249.01.T01:CDS 40.0%
TAGATGAGATGACTCAAGCA+TGG - Chr7:88784023-88784042 None:intergenic 40.0%
TCTATAACTGGAACTCAGAC+AGG - Chr7:88784698-88784717 None:intergenic 40.0%
TGGTGAAGAGGAACATTTGA+GGG + Chr7:88783478-88783497 MsG0780041249.01.T01:CDS 40.0%
TTCTGTTACTAATGCAGGAG+AGG + Chr7:88783297-88783316 MsG0780041249.01.T01:CDS 40.0%
TTGAGGGAGCAATTGAATAG+TGG + Chr7:88783494-88783513 MsG0780041249.01.T01:CDS 40.0%
TTGCATTCAAGAACTTCCTC+AGG - Chr7:88783614-88783633 None:intergenic 40.0%
! AAAGTAAGGTACCTAGCACT+AGG - Chr7:88782457-88782476 None:intergenic 40.0%
! TGTTCCTCTTCACCATTTTC+TGG - Chr7:88783473-88783492 None:intergenic 40.0%
! TTGGTTAGTCCAAATGGAAC+CGG - Chr7:88782642-88782661 None:intergenic 40.0%
!! TGGAGATTATCAGTTGGTGA+TGG - Chr7:88782543-88782562 None:intergenic 40.0%
AATCTCGAGTTTGAGCAGTG+CGG - Chr7:88782600-88782619 None:intergenic 45.0%
ACCAACTGATAATCTCCACC+GGG + Chr7:88782545-88782564 MsG0780041249.01.T01:intron 45.0%
ACTTCACGTAGTCGGTATAC+GGG - Chr7:88783930-88783949 None:intergenic 45.0%
AGACACCAATGATGTGGAGA+TGG + Chr7:88784780-88784799 MsG0780041249.01.T01:CDS 45.0%
AGAGAGTCCTACCAAAACTG+AGG + Chr7:88784669-88784688 MsG0780041249.01.T01:CDS 45.0%
AGTAGTGTGAAGGGAAGAAG+AGG + Chr7:88782196-88782215 MsG0780041249.01.T01:CDS 45.0%
AGTCCATCTAACACTCCTGA+AGG - Chr7:88783587-88783606 None:intergenic 45.0%
ATACTCACAGGGAGGACTAA+AGG + Chr7:88783322-88783341 MsG0780041249.01.T01:CDS 45.0%
ATGCAGCTTCTTCACTGTTG+TGG - Chr7:88784546-88784565 None:intergenic 45.0%
CAAATCCGAGGTTGACGATT+TGG - Chr7:88783886-88783905 None:intergenic 45.0%
CACCAACTGATAATCTCCAC+CGG + Chr7:88782544-88782563 MsG0780041249.01.T01:intron 45.0%
CAGGAGAGGTTATACTCACA+GGG + Chr7:88783311-88783330 MsG0780041249.01.T01:CDS 45.0%
GACTTCACGTAGTCGGTATA+CGG - Chr7:88783931-88783950 None:intergenic 45.0%
GCATGCATTAGAGCAGTTAG+TGG - Chr7:88784334-88784353 None:intergenic 45.0%
GGCTGATGTTGTAGTTGAAG+AGG + Chr7:88783715-88783734 MsG0780041249.01.T01:CDS 45.0%
GGGGTGAGTTTGACAGATTT+AGG - Chr7:88783976-88783995 None:intergenic 45.0%
TCTTCTTGCAAATGCTCTGC+AGG - Chr7:88784646-88784665 None:intergenic 45.0%
TGGTTTAGGGAACTTCCTTC+AGG + Chr7:88783569-88783588 MsG0780041249.01.T01:CDS 45.0%
TGTCGAGCCGTTTCTATAAC+TGG - Chr7:88784710-88784729 None:intergenic 45.0%
TGTGTGGAGAAGAAGATGAG+AGG + Chr7:88782139-88782158 MsG0780041249.01.T01:exon 45.0%
! CAGACAGGAATCCTCAGTTT+TGG - Chr7:88784683-88784702 None:intergenic 45.0%
! GTTAGATGGACTTTCACCTG+AGG + Chr7:88783595-88783614 MsG0780041249.01.T01:CDS 45.0%
!! CAGGAATCCTCAGTTTTGGT+AGG - Chr7:88784679-88784698 None:intergenic 45.0%
!! CTTCCTTCAGGAGTGTTAGA+TGG + Chr7:88783581-88783600 MsG0780041249.01.T01:CDS 45.0%
!!! TAAAAAATTGAATTTTTTTA+GGG + Chr7:88782719-88782738 MsG0780041249.01.T01:intron 5.0%
AAACGGCTCGACAACAACTG+AGG + Chr7:88784717-88784736 MsG0780041249.01.T01:CDS 50.0%
AACGGCTCGACAACAACTGA+GGG + Chr7:88784718-88784737 MsG0780041249.01.T01:CDS 50.0%
AGGCTCTGCGATTTCTTGCA+GGG - Chr7:88783845-88783864 None:intergenic 50.0%
AGGTACCTAGCACTAGGAAC+AGG - Chr7:88782451-88782470 None:intergenic 50.0%
CTCCATTGGATGATGAACGG+CGG - Chr7:88782326-88782345 None:intergenic 50.0%
GAAGATGAGAGGACCAGTGA+TGG + Chr7:88782150-88782169 MsG0780041249.01.T01:exon 50.0%
GAGAGGTTATACTCACAGGG+AGG + Chr7:88783314-88783333 MsG0780041249.01.T01:CDS 50.0%
GCAGCTAACATTAACGCTGC+TGG - Chr7:88782250-88782269 None:intergenic 50.0%
GCAGGAGAGGTTATACTCAC+AGG + Chr7:88783310-88783329 MsG0780041249.01.T01:CDS 50.0%
GCAGTGCGGATGAAAGTAGT+CGG - Chr7:88782586-88782605 None:intergenic 50.0%
GGAAGAAGAGGAAGCAGAGA+CGG + Chr7:88782208-88782227 MsG0780041249.01.T01:CDS 50.0%
GGGATCCAAATCGTCAACCT+CGG + Chr7:88783878-88783897 MsG0780041249.01.T01:intron 50.0%
GTAGGCCATCCAATCTCCAT+TGG - Chr7:88782340-88782359 None:intergenic 50.0%
TAGGCTCTGCGATTTCTTGC+AGG - Chr7:88783846-88783865 None:intergenic 50.0%
TCCCGGTGGAGATTATCAGT+TGG - Chr7:88782549-88782568 None:intergenic 50.0%
! GGTGGTGGTAGTAGTGTGAA+GGG + Chr7:88782187-88782206 MsG0780041249.01.T01:CDS 50.0%
!! CTGCTGTTGCTGTTTCTTCG+CGG - Chr7:88784408-88784427 None:intergenic 50.0%
AAAGTAGTCGGTGGCCAGTC+AGG - Chr7:88782574-88782593 None:intergenic 55.0%
ACGGCGGAGATTACATCGTC+AGG - Chr7:88782310-88782329 None:intergenic 55.0%
AGAAGAGGAAGCAGAGACGG+CGG + Chr7:88782211-88782230 MsG0780041249.01.T01:CDS 55.0%
CATCCACCACTCACCATCAC+TGG - Chr7:88782166-88782185 None:intergenic 55.0%
CTAGCACTAGGAACAGGAGC+AGG - Chr7:88782445-88782464 None:intergenic 55.0%
CTCCGCCGTTCATCATCCAA+TGG + Chr7:88782321-88782340 MsG0780041249.01.T01:CDS 55.0%
CTGCTCCTGTTCCTAGTGCT+AGG + Chr7:88782443-88782462 MsG0780041249.01.T01:CDS 55.0%
GGCTCTGCGATTTCTTGCAG+GGG - Chr7:88783844-88783863 None:intergenic 55.0%
GTGCGGATGAAAGTAGTCGG+TGG - Chr7:88782583-88782602 None:intergenic 55.0%
! AGAGGACCAGTGATGGTGAG+TGG + Chr7:88782157-88782176 MsG0780041249.01.T01:CDS 55.0%
! CGGTGGTGGTAGTAGTGTGA+AGG + Chr7:88782186-88782205 MsG0780041249.01.T01:CDS 55.0%
!! GTGATGGTGAGTGGTGGATG+CGG + Chr7:88782166-88782185 MsG0780041249.01.T01:CDS 55.0%
AAGAGGAAGCAGAGACGGCG+GGG + Chr7:88782213-88782232 MsG0780041249.01.T01:CDS 60.0%
GAAGAGGAAGCAGAGACGGC+GGG + Chr7:88782212-88782231 MsG0780041249.01.T01:CDS 60.0%
TCTCCACCGGGAAACCTGAC+TGG + Chr7:88782557-88782576 MsG0780041249.01.T01:intron 60.0%
! GGACCAGTGATGGTGAGTGG+TGG + Chr7:88782160-88782179 MsG0780041249.01.T01:CDS 60.0%
!! ATGGTGAGTGGTGGATGCGG+TGG + Chr7:88782169-88782188 MsG0780041249.01.T01:CDS 60.0%
CGGTGGCCAGTCAGGTTTCC+CGG - Chr7:88782566-88782585 None:intergenic 65.0%
TGGCCAGTCAGGTTTCCCGG+TGG - Chr7:88782563-88782582 None:intergenic 65.0%
!! GTGAGTGGTGGATGCGGTGG+TGG + Chr7:88782172-88782191 MsG0780041249.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 88782022 88785244 88782022 ID=MsG0780041249.01;Name=MsG0780041249.01
Chr7 mRNA 88782022 88785244 88782022 ID=MsG0780041249.01.T01;Parent=MsG0780041249.01;Name=MsG0780041249.01.T01;_AED=0.24;_eAED=0.24;_QI=132|1|1|1|1|1|4|389|438
Chr7 exon 88782022 88782464 88782022 ID=MsG0780041249.01.T01:exon:12173;Parent=MsG0780041249.01.T01
Chr7 exon 88783223 88783343 88783223 ID=MsG0780041249.01.T01:exon:12174;Parent=MsG0780041249.01.T01
Chr7 exon 88783446 88783796 88783446 ID=MsG0780041249.01.T01:exon:12175;Parent=MsG0780041249.01.T01
Chr7 exon 88784322 88785244 88784322 ID=MsG0780041249.01.T01:exon:12176;Parent=MsG0780041249.01.T01
Chr7 five_prime_UTR 88782022 88782153 88782022 ID=MsG0780041249.01.T01:five_prime_utr;Parent=MsG0780041249.01.T01
Chr7 CDS 88782154 88782464 88782154 ID=MsG0780041249.01.T01:cds;Parent=MsG0780041249.01.T01
Chr7 CDS 88783223 88783343 88783223 ID=MsG0780041249.01.T01:cds;Parent=MsG0780041249.01.T01
Chr7 CDS 88783446 88783796 88783446 ID=MsG0780041249.01.T01:cds;Parent=MsG0780041249.01.T01
Chr7 CDS 88784322 88784855 88784322 ID=MsG0780041249.01.T01:cds;Parent=MsG0780041249.01.T01
Chr7 three_prime_UTR 88784856 88785244 88784856 ID=MsG0780041249.01.T01:three_prime_utr;Parent=MsG0780041249.01.T01
Gene Sequence

>MsG0780041249.01.T01

ATGAGAGGACCAGTGATGGTGAGTGGTGGATGCGGTGGTGGTAGTAGTGTGAAGGGAAGAAGAGGAAGCAGAGACGGCGGGGAAGAAGTGTCGCCAGCAGCGTTAATGTTAGCTGCTTTGAAGAAATCAATGGTTGCTTGTAGTGTGGAGAGTCCTGACGATGTAATCTCCGCCGTTCATCATCCAATGGAGATTGGATGGCCTACAAATGTTAAGCATGTTAGCCATGTCACGTTTGATCGTTTTAATGGGTTTTTGGGTCTTCCTCTTGAGCTTGAAGTTCATGTTCCTGCTCCTGTTCCTAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTGTTACTAATGCAGGAGAGGTTATACTCACAGGGAGGACTAAAGGCTGAAGGAATATTTCGTATAAATCCAGAAAATGGTGAAGAGGAACATTTGAGGGAGCAATTGAATAGTGGCATTGTGCCAAATGACATTGATGTACATTGCTTAGCTGGCTTAATTAAAGCATGGTTTAGGGAACTTCCTTCAGGAGTGTTAGATGGACTTTCACCTGAGGAAGTTCTTGAATGCAACACTGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTGAAACCAGTTGAATCAGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTAGTTGAAGAGGATTATAACAAAATGGATGCTAGGAATATTGCTATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTAATGCATGCGGTCCAAGTGATGAATTTACTGAAAACACTGATATTGAAGACACTTCGAGACCGCGAAGAAACAGCAACAGCAGAATATTCATCCATGTCATCTCATTCATCAGATGAATATGACAGTCAACAAGAAATGTATACTAGCGGTGAATTGAAAAGAACCAAGTTAGATTATGATGATCATGTTGACTACAGCCACAACAGTGAAGAAGCTGCATCTGCTCTAAGTGAGATAGAAGAATGCTTCTTAGAACAATTGGATGATGTTCAGACAAAACGATTCACAAAAGAAAAACCTGCAGAGCATTTGCAAGAAGAGTTAGAGAGTCCTACCAAAACTGAGGATTCCTGTCTGAGTTCCAGTTATAGAAACGGCTCGACAACAACTGAGGGATCAAATGCTGACACAAGTAGTCCATCAATAGAAAGTAAAGACACCAATGATGTGGAGATGGTAGATAAATTTAGTGATTCTGTTTCACTCTTGCCTTTGTTTGCATCTAATTAA

Protein sequence

>MsG0780041249.01.T01

MRGPVMVSGGCGGGSSVKGRRGSRDGGEEVSPAALMLAALKKSMVACSVESPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPNDIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLECNTEEESVELVKQLKPVESALLNWAVDLMADVVVEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETATAEYSSMSSHSSDEYDSQQEMYTSGELKRTKLDYDDHVDYSHNSEEAASALSEIEECFLEQLDDVQTKRFTKEKPAEHLQEELESPTKTEDSCLSSSYRNGSTTTEGSNADTSSPSIESKDTNDVEMVDKFSDSVSLLPLFASN*