AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018108.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018108.01.T01 MTR_4g005390 53.767 292 47 10 1 224 1 272 5.01e-82 246
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018108.01.T01 AT2G46910 50.732 205 55 5 50 223 93 282 5.93e-54 176

Find 84 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCATTCCTAATTTGTTTC+AGG 0.177422 4:-302370 MsG0480018108.01.T01:intron
CAAACCAAAGCTTCTCTTTC+CGG 0.178720 4:+303149 None:intergenic
ATTATATTATCTGAGTTATT+TGG 0.204203 4:-300042 MsG0480018108.01.T01:CDS
TTTGGATGATAATATGCTTT+TGG 0.254717 4:-300024 MsG0480018108.01.T01:CDS
TCCAACTTGTTAAAATCAAT+TGG 0.289643 4:+302649 None:intergenic
GGCAAGAAGGTGAGCGTAAT+TGG 0.291503 4:-303190 MsG0480018108.01.T01:five_prime_UTR
GGAATTACCTGAAACAAATT+AGG 0.305098 4:+302363 None:intergenic
GAAACTGAAGGTAAATATTT+CGG 0.318032 4:+300979 None:intergenic
ATAAGCCGTGGTTGAGGAAT+TGG 0.329110 4:-299883 MsG0480018108.01.T01:exon
GGAATTCTCATCATTGTATA+AGG 0.343085 4:-299816 MsG0480018108.01.T01:three_prime_UTR
CAATTTCCCGTGAGGGATCC+TGG 0.375960 4:-300166 MsG0480018108.01.T01:CDS
TGGCACTTTGGAAGTAGTTA+AGG 0.377907 4:-303128 MsG0480018108.01.T01:five_prime_UTR
ATTTCAATTGCAATGTTAGT+AGG 0.383296 4:-303012 MsG0480018108.01.T01:CDS
GGCCGTGCTGTTGGTGGAGG+AGG 0.385119 4:-300002 MsG0480018108.01.T01:CDS
GCATCCGGAAAGAGAAGCTT+TGG 0.399083 4:-303153 MsG0480018108.01.T01:five_prime_UTR
GAGAATTCCTTGTGGACTAT+AGG 0.403316 4:+299830 None:intergenic
CGCTCGTCGGTAAAGTGATT+GGG 0.407714 4:+299959 None:intergenic
AAGTGAAAAGGGTATGGATT+TGG 0.407754 4:-303104 MsG0480018108.01.T01:exon
CCATCATATATATACCTTCC+AGG 0.410693 4:+300148 None:intergenic
CGGAAAGAGAAGCTTTGGTT+TGG 0.413871 4:-303148 MsG0480018108.01.T01:five_prime_UTR
GAAGCTTTGGTTTGGCACTT+TGG 0.423070 4:-303140 MsG0480018108.01.T01:five_prime_UTR
TTGGGCCGTGCTGTTGGTGG+AGG 0.425794 4:-300005 MsG0480018108.01.T01:CDS
GCCATCTGCCGCTGCTCCCC+AGG 0.426895 4:-302966 MsG0480018108.01.T01:intron
ACGCTCGTCGGTAAAGTGAT+TGG 0.428002 4:+299958 None:intergenic
AGTAGTTAAGGAAAGTGAAA+AGG 0.431509 4:-303116 MsG0480018108.01.T01:five_prime_UTR
GTCAAGGAACCGCATGCATC+CGG 0.435985 4:-303168 MsG0480018108.01.T01:five_prime_UTR
TGGAAGAGAATGAGAACATC+AGG 0.437458 4:+302595 None:intergenic
AGATGGCATGGCCATGGAAA+TGG 0.445111 4:+302982 None:intergenic
CCAACTTGTTAAAATCAATT+GGG 0.453481 4:+302650 None:intergenic
CAGCTTGAACATGTTTACTT+TGG 0.457697 4:-301075 MsG0480018108.01.T01:CDS
TTAACAAGTTGGATGGAACT+TGG 0.462758 4:-302639 MsG0480018108.01.T01:CDS
TAACATTGCAATTGAAATTG+TGG 0.474091 4:+303017 None:intergenic
GTAGTTAAGGAAAGTGAAAA+GGG 0.474429 4:-303115 MsG0480018108.01.T01:five_prime_UTR
GACCGATACAAGAGTGAACT+TGG 0.486559 4:+301001 None:intergenic
GGTTGAGATAACATTGGTGC+AGG 0.487955 4:-301054 MsG0480018108.01.T01:CDS
TAAGGAAAGTGAAAAGGGTA+TGG 0.492062 4:-303110 MsG0480018108.01.T01:exon
CACTCGATAAGCCGTGGTTG+AGG 0.492755 4:-299889 MsG0480018108.01.T01:exon
AGCGGCAGATGGCATGGCCA+TGG 0.498975 4:+302976 None:intergenic
GGATACAGTACTTGAAAGAA+AGG 0.499312 4:+302556 None:intergenic
GGGAGCAGCGGCAGATGGCA+TGG 0.503640 4:+302970 None:intergenic
TGGTTGAGGAATTGGACATA+TGG 0.507094 4:-299875 MsG0480018108.01.T01:three_prime_UTR
TAGGAAATTATCCATTTCCA+TGG 0.510429 4:-302993 MsG0480018108.01.T01:CDS
TTATTCGCAATGTTGTCCGC+TGG 0.516151 4:-302392 MsG0480018108.01.T01:CDS
CAAAGCTCAATTTCCCGTGA+GGG 0.519679 4:-300173 MsG0480018108.01.T01:CDS
ACCTGGGGAGCAGCGGCAGA+TGG 0.530190 4:+302965 None:intergenic
GTAGCAGTAGTAATACATAA+TGG 0.531270 4:+303049 None:intergenic
ATTGCGAATAACACCTCCAT+TGG 0.531951 4:+302404 None:intergenic
GATTGTAGGGAATCAGTTGG+AGG 0.533251 4:-300065 MsG0480018108.01.T01:intron
AAGGAAGAGTAGCAGCAGCT+TGG 0.537516 4:+302575 None:intergenic
CACCTCCATTGGAGCTATGA+CGG 0.538545 4:+302415 None:intergenic
TGCCAAGTTCACTCTTGTAT+CGG 0.542599 4:-301003 MsG0480018108.01.T01:CDS
ATGGAGAGGAAGAAATAGAC+TGG 0.545081 4:-299856 MsG0480018108.01.T01:three_prime_UTR
TTGGATTGTAGGGAATCAGT+TGG 0.547629 4:-300068 MsG0480018108.01.T01:intron
GGAACAAGAAGGTGCTACAT+TGG 0.551537 4:-301033 MsG0480018108.01.T01:CDS
CTTCTCTTTCCGGATGCATG+CGG 0.559269 4:+303159 None:intergenic
TCATCAATGTCAGGTGAATG+TGG 0.559421 4:-302692 MsG0480018108.01.T01:intron
TACCTTCCAGGATCCCTCAC+GGG 0.569268 4:+300160 None:intergenic
ACCTACTACCTGGGGAGCAG+CGG 0.570524 4:+302958 None:intergenic
CAATGTCAGGTGAATGTGGA+AGG 0.576041 4:-302688 MsG0480018108.01.T01:intron
GTCAGGTGAATGTGGAAGGA+AGG 0.576429 4:-302684 MsG0480018108.01.T01:intron
GAAATTGAGCTTTGAAAGCA+CGG 0.585966 4:+300182 None:intergenic
GAATGTGGAAGGAAGGAACA+TGG 0.586118 4:-302677 MsG0480018108.01.T01:CDS
GAATGCCGTCATAGCTCCAA+TGG 0.593991 4:-302420 MsG0480018108.01.T01:CDS
TGATTACCTCTTGAAACTGA+AGG 0.594547 4:+300967 None:intergenic
AACTACTGATCAACGCTCGT+CGG 0.594814 4:+299946 None:intergenic
TATTTACCTTCAGTTTCAAG+AGG 0.595839 4:-300973 MsG0480018108.01.T01:intron
TATGTATTACTACTGCTACT+AGG 0.606069 4:-303045 MsG0480018108.01.T01:CDS
TTCCCGTGAGGGATCCTGGA+AGG 0.606634 4:-300162 MsG0480018108.01.T01:intron
CTGGAGGCCTATAGTCCACA+AGG 0.607285 4:-299837 MsG0480018108.01.T01:three_prime_UTR
ATACCTTCCAGGATCCCTCA+CGG 0.609419 4:+300159 None:intergenic
AATATTGTGTGATGGCAAGA+AGG 0.611653 4:-303203 None:intergenic
ACAAATTAGGAATGCTCCAG+CGG 0.613575 4:+302376 None:intergenic
AAGGTGAGCGTAATTGGTCA+AGG 0.624361 4:-303184 MsG0480018108.01.T01:five_prime_UTR
TACTTTGGTTGAGATAACAT+TGG 0.627218 4:-301060 MsG0480018108.01.T01:CDS
TCAAAGCTCAATTTCCCGTG+AGG 0.649088 4:-300174 MsG0480018108.01.T01:CDS
GAGGAATTGGACATATGGAG+AGG 0.653797 4:-299870 MsG0480018108.01.T01:three_prime_UTR
AATGTGGAAGGAAGGAACAT+GGG 0.663999 4:-302676 MsG0480018108.01.T01:CDS
CTCCTCCTCCACCAACAGCA+CGG 0.664017 4:+300000 None:intergenic
TGCCGTCATAGCTCCAATGG+AGG 0.669650 4:-302417 MsG0480018108.01.T01:CDS
CAGTAACACTCGATAAGCCG+TGG 0.675508 4:-299895 MsG0480018108.01.T01:exon
TATGTCCAATTCCTCAACCA+CGG 0.683624 4:+299878 None:intergenic
ACATTGGTGCAGGAACAAGA+AGG 0.688213 4:-301044 MsG0480018108.01.T01:CDS
ACAATGATGAGAATTCCTTG+TGG 0.696408 4:+299822 None:intergenic
GAGAGGAAGAAATAGACTGG+AGG 0.707122 4:-299853 MsG0480018108.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAATAACAAATTAAT+AGG + Chr4:300337-300356 None:intergenic 10.0%
!! ATATAATAAAATATGGAAAT+GGG + Chr4:298282-298301 None:intergenic 10.0%
!! TAAAATAAAATTTGCAAATT+AGG + Chr4:301916-301935 None:intergenic 10.0%
!! TATCACAATAAATAATAAAA+AGG - Chr4:300782-300801 MsG0480018108.01.T01:intron 10.0%
!!! AATTTGCAAATTTTATTTTA+TGG - Chr4:301916-301935 MsG0480018108.01.T01:intron 10.0%
!!! TTGTATTTTTTTTTTTTTAG+TGG + Chr4:300531-300550 None:intergenic 10.0%
!! AAAAATACACAAAAAAACAA+AGG - Chr4:302095-302114 MsG0480018108.01.T01:intron 15.0%
!! AAAATACTATCATATATAAC+TGG - Chr4:302233-302252 MsG0480018108.01.T01:intron 15.0%
!! AAGAAAGTGAAAAATAAAAA+TGG + Chr4:296564-296583 None:intergenic 15.0%
!! AATTATATGTTGCAAAATAT+CGG + Chr4:298165-298184 None:intergenic 15.0%
!! ATTATATTATCTGAGTTATT+TGG - Chr4:299005-299024 MsG0480018108.01.T01:intron 15.0%
!! CATATAATAAAATATGGAAA+TGG + Chr4:298283-298302 None:intergenic 15.0%
!! GTAAACCATATAATAAAATA+TGG + Chr4:298289-298308 None:intergenic 15.0%
!! TATAATAAAATATGGAAATG+GGG + Chr4:298281-298300 None:intergenic 15.0%
!! TATTAAAATACTTATGCTTA+AGG - Chr4:301548-301567 MsG0480018108.01.T01:intron 15.0%
!! TTTGTAATTAAATATCTAGT+AGG + Chr4:300480-300499 None:intergenic 15.0%
!!! AATCAATTTTAAAAACTTCA+TGG + Chr4:299622-299641 None:intergenic 15.0%
!!! ATATATTTGATTTCATCTTT+AGG - Chr4:299879-299898 MsG0480018108.01.T01:three_prime_UTR 15.0%
!!! CAAAAAAAAAAGTATTAAAG+AGG + Chr4:300096-300115 None:intergenic 15.0%
!!! CATTTCCATATTTTATTATA+TGG - Chr4:298281-298300 MsG0480018108.01.T01:intron 15.0%
!!! TTAATTTTTAAATATTCGAG+AGG - Chr4:299800-299819 MsG0480018108.01.T01:three_prime_UTR 15.0%
!!! TTCTCTTGTTATTAATTAAA+AGG - Chr4:298189-298208 MsG0480018108.01.T01:intron 15.0%
!! AAAGGAGAGAAATAAAAAAA+AGG - Chr4:300623-300642 MsG0480018108.01.T01:intron 20.0%
!! AAATAGTATCATTACTCAAA+AGG - Chr4:297191-297210 MsG0480018108.01.T01:intron 20.0%
!! AACATGTTTAAATTGATGTA+GGG + Chr4:300252-300271 None:intergenic 20.0%
!! AATTATATAAAAGCAATCAC+TGG + Chr4:296924-296943 None:intergenic 20.0%
!! ACATTATTAATTCTTAATCC+AGG + Chr4:301281-301300 None:intergenic 20.0%
!! AGTAAGAAAGTAAAAAGTAA+AGG + Chr4:296708-296727 None:intergenic 20.0%
!! ATAATATTGCAAAAATTGAG+GGG + Chr4:301069-301088 None:intergenic 20.0%
!! ATATTAGAACATTAAATCGT+GGG - Chr4:299494-299513 MsG0480018108.01.T01:intron 20.0%
!! ATTAAATAAATACTGTGTGA+TGG - Chr4:300806-300825 MsG0480018108.01.T01:intron 20.0%
!! CATAATATTGCAAAAATTGA+GGG + Chr4:301070-301089 None:intergenic 20.0%
!! GAAATTGAAGATAGATATTA+TGG + Chr4:301672-301691 None:intergenic 20.0%
!! GAATTAATTAGTGTCTTTAT+TGG - Chr4:298933-298952 MsG0480018108.01.T01:intron 20.0%
!! GTAAGAAAGTAAAAAGTAAA+TGG + Chr4:296707-296726 None:intergenic 20.0%
!! TATATAAGTATACTTCATCT+TGG - Chr4:297006-297025 MsG0480018108.01.T01:intron 20.0%
!!! AAGTATTTTAATATGTGGTT+AGG + Chr4:301541-301560 None:intergenic 20.0%
!!! AATCTGATTTTCTTTTATGA+TGG - Chr4:302165-302184 MsG0480018108.01.T01:intron 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG - Chr4:299471-299490 MsG0480018108.01.T01:intron 20.0%
!!! AGCATAAGTATTTTAATATG+TGG + Chr4:301546-301565 None:intergenic 20.0%
!!! CTTGTTATTAATTAAAAGGT+TGG - Chr4:298193-298212 MsG0480018108.01.T01:intron 20.0%
!!! CTTTTCTTAATCTTAATGAT+GGG + Chr4:298409-298428 None:intergenic 20.0%
!!! TATTGCATTTATTCATTTTG+AGG - Chr4:299565-299584 MsG0480018108.01.T01:intron 20.0%
!!! TGCTTTTATATAATTGAAAC+TGG - Chr4:296929-296948 MsG0480018108.01.T01:intron 20.0%
!!! TTCACAGTTTTTATCTTAAA+GGG - Chr4:297144-297163 MsG0480018108.01.T01:intron 20.0%
!!! TTTCACAGTTTTTATCTTAA+AGG - Chr4:297143-297162 MsG0480018108.01.T01:intron 20.0%
!!! TTTTCTTAATCTTAATGATG+GGG + Chr4:298408-298427 None:intergenic 20.0%
! AAAATCTACACCAATTATAG+TGG - Chr4:300360-300379 MsG0480018108.01.T01:intron 25.0%
! AAAATGGTAAGAAAGAAAAG+AGG + Chr4:296548-296567 None:intergenic 25.0%
! AAATGCAACAGATTAAACTA+CGG + Chr4:298626-298645 None:intergenic 25.0%
! AAATGGTAAGAAAGAAAAGA+GGG + Chr4:296547-296566 None:intergenic 25.0%
! AAGAATGATCATAGTTAATC+TGG + Chr4:301024-301043 None:intergenic 25.0%
! AAGAATGATCATAGTTATCT+GGG + Chr4:296769-296788 None:intergenic 25.0%
! AAGGAGAGTAAAAATTAGAT+TGG - Chr4:302987-303006 MsG0480018108.01.T01:CDS 25.0%
! AATAATATTCCACTTCTCAA+AGG + Chr4:297352-297371 None:intergenic 25.0%
! AATATATTTAAACTGACGCA+GGG - Chr4:301754-301773 MsG0480018108.01.T01:intron 25.0%
! AATATCAGGCAAAAAATTGT+TGG + Chr4:299780-299799 None:intergenic 25.0%
! ACAAATGAGCAATTTATAAC+TGG - Chr4:298501-298520 MsG0480018108.01.T01:intron 25.0%
! ACTATATTACTTGAGCTATT+TGG - Chr4:302799-302818 MsG0480018108.01.T01:intron 25.0%
! ACTTAAGCTTAATTAGTTCA+GGG + Chr4:297939-297958 None:intergenic 25.0%
! AGAATGATCATAGTTAATCT+GGG + Chr4:301023-301042 None:intergenic 25.0%
! ATAACATATCCTTCTTTAGT+TGG - Chr4:302271-302290 MsG0480018108.01.T01:intron 25.0%
! ATAATGTGTTCTTTAATTGC+TGG + Chr4:299408-299427 None:intergenic 25.0%
! ATATCTAAATGTTCTCAAGA+TGG + Chr4:297739-297758 None:intergenic 25.0%
! ATCATATATAACTGGTATTC+TGG - Chr4:302241-302260 MsG0480018108.01.T01:intron 25.0%
! ATTTCAATTGCAATGTTAGT+AGG - Chr4:296035-296054 MsG0480018108.01.T01:intron 25.0%
! ATTTGAACTTACTGCTTTAT+GGG - Chr4:303076-303095 MsG0480018108.01.T01:CDS 25.0%
! CAACATGTTTAAATTGATGT+AGG + Chr4:300253-300272 None:intergenic 25.0%
! CAGGATGAAGTATATTTATA+TGG + Chr4:301262-301281 None:intergenic 25.0%
! CATATAAATATACTTCATCC+TGG - Chr4:301260-301279 MsG0480018108.01.T01:intron 25.0%
! CCATCATTAAGATTAAGAAA+AGG - Chr4:298407-298426 MsG0480018108.01.T01:intron 25.0%
! GAAACTGAAGGTAAATATTT+CGG + Chr4:298071-298090 None:intergenic 25.0%
! GAATAATCAAGTATCAATAG+AGG + Chr4:296853-296872 None:intergenic 25.0%
! GAATAATCAAGTATGAATAG+AGG + Chr4:301108-301127 None:intergenic 25.0%
! GAATATTATTAAGCACTAGA+GGG - Chr4:297362-297381 MsG0480018108.01.T01:intron 25.0%
! GAGTATTCAAAATTTCTTAG+AGG - Chr4:300911-300930 MsG0480018108.01.T01:intron 25.0%
! GATATAGAAGGGAAATTTAA+GGG + Chr4:302200-302219 None:intergenic 25.0%
! GATATTAGAACATTAAATCG+TGG - Chr4:299493-299512 MsG0480018108.01.T01:intron 25.0%
! GCATAATATTGCAAAAATTG+AGG + Chr4:301071-301090 None:intergenic 25.0%
! TAAAATTTGCAAATTAGGTG+TGG + Chr4:301911-301930 None:intergenic 25.0%
! TAACATTGCAATTGAAATTG+TGG + Chr4:296033-296052 None:intergenic 25.0%
! TAAGAATGATCATAGTTATC+TGG + Chr4:296770-296789 None:intergenic 25.0%
! TAAGTTACAAGCAAAGAAAA+CGG - Chr4:297407-297426 MsG0480018108.01.T01:intron 25.0%
! TATCTATCTTCAATTTCAAC+AGG - Chr4:301675-301694 MsG0480018108.01.T01:intron 25.0%
! TATTTGAACTTACTGCTTTA+TGG - Chr4:303075-303094 MsG0480018108.01.T01:CDS 25.0%
! TCAATCTTACTGATATAGAA+GGG + Chr4:302211-302230 None:intergenic 25.0%
! TCAATTGAGAAGCTAAATTA+CGG + Chr4:300859-300878 None:intergenic 25.0%
! TCATAAGTTATTAGTGTCAA+TGG + Chr4:298691-298710 None:intergenic 25.0%
! TCTGATTCTAATCAAAACTT+CGG - Chr4:302505-302524 MsG0480018108.01.T01:intron 25.0%
! TCTTTGCTTGTAACTTATAT+TGG + Chr4:297404-297423 None:intergenic 25.0%
! TGATATAGAAGGGAAATTTA+AGG + Chr4:302201-302220 None:intergenic 25.0%
! TGCAAACATATAAAAGATCA+TGG + Chr4:302400-302419 None:intergenic 25.0%
! TTAGCTCATTAATATCTTCT+AGG - Chr4:297522-297541 MsG0480018108.01.T01:intron 25.0%
!! AATCTGATTTGTCATTATGA+TGG - Chr4:298362-298381 MsG0480018108.01.T01:intron 25.0%
!! ATGATCTTTTATATGTTTGC+AGG - Chr4:302399-302418 MsG0480018108.01.T01:CDS 25.0%
!! CCTTTTCTTAATCTTAATGA+TGG + Chr4:298410-298429 None:intergenic 25.0%
!! CTAGTAGGTTGAAAATAATA+GGG + Chr4:300465-300484 None:intergenic 25.0%
!! GCATGAACATTTTATTACTT+TGG - Chr4:298112-298131 MsG0480018108.01.T01:intron 25.0%
!! GGTGATATATTTTATGTGAA+TGG - Chr4:302526-302545 MsG0480018108.01.T01:intron 25.0%
!! GTGTTGTCTTTGAAAAAATA+AGG - Chr4:300382-300401 MsG0480018108.01.T01:intron 25.0%
!! TAATATCTTCTAGGAGAATT+CGG - Chr4:297531-297550 MsG0480018108.01.T01:intron 25.0%
!! TCTAATTTTTACTCTCCTTA+TGG + Chr4:302986-303005 None:intergenic 25.0%
!! TCTAGTAGGTTGAAAATAAT+AGG + Chr4:300466-300485 None:intergenic 25.0%
!! TCTTTTGTATTGTAGGAAAT+CGG - Chr4:302769-302788 MsG0480018108.01.T01:intron 25.0%
!! TTGGATGATAATATGCTTTT+AGG - Chr4:299024-299043 MsG0480018108.01.T01:intron 25.0%
!! TTGGATGATAATATGCTTTT+GGG - Chr4:299024-299043 MsG0480018108.01.T01:intron 25.0%
!! TTTGGATGATAATATGCTTT+TGG - Chr4:299023-299042 MsG0480018108.01.T01:intron 25.0%
!! TTTGGTGATATATTTGTGAA+CGG - Chr4:298736-298755 MsG0480018108.01.T01:intron 25.0%
!!! ATTGATTTTAACAAGTTGGA+TGG - Chr4:296401-296420 MsG0480018108.01.T01:intron 25.0%
!!! CCAACTTGTTAAAATCAATT+GGG + Chr4:296400-296419 None:intergenic 25.0%
!!! GACTTTAAAATACACTTTCA+TGG - Chr4:300410-300429 MsG0480018108.01.T01:intron 25.0%
!!! GTTTTGATTAGAATCAGAAA+TGG + Chr4:302503-302522 None:intergenic 25.0%
!!! TAGGTTTTGATTTGAATTTG+AGG + Chr4:301468-301487 None:intergenic 25.0%
!!! TATTTGAACTTGCTACTTTT+TGG - Chr4:299279-299298 MsG0480018108.01.T01:intron 25.0%
!!! TCCAACTTGTTAAAATCAAT+TGG + Chr4:296401-296420 None:intergenic 25.0%
AAAAACAAAACTGAAGTCGA+AGG + Chr4:301859-301878 None:intergenic 30.0%
AAAAAGGAAAATGTCAGAAG+TGG - Chr4:300639-300658 MsG0480018108.01.T01:intron 30.0%
AAAAGGAAAATGTCAGAAGT+GGG - Chr4:300640-300659 MsG0480018108.01.T01:intron 30.0%
AAAGAAAAGAGGGAAAATGA+TGG + Chr4:296537-296556 None:intergenic 30.0%
AAAGACAACACCACTATAAT+TGG + Chr4:300373-300392 None:intergenic 30.0%
AAATATTAGTGAACAACTGC+AGG - Chr4:298544-298563 MsG0480018108.01.T01:intron 30.0%
AACATAACCTTTCATTACAC+TGG - Chr4:299740-299759 MsG0480018108.01.T01:three_prime_UTR 30.0%
AAGTGTAGAAGATAGAAAGT+AGG + Chr4:302063-302082 None:intergenic 30.0%
AAGTTACAAGCAAAGAAAAC+GGG - Chr4:297408-297427 MsG0480018108.01.T01:intron 30.0%
AATGGTAATATATCTGCATG+AGG - Chr4:298762-298781 MsG0480018108.01.T01:intron 30.0%
AGAATGATCATAGTTATCTG+GGG + Chr4:296768-296787 None:intergenic 30.0%
AGGTATGGATATATATGTGA+TGG - Chr4:302695-302714 MsG0480018108.01.T01:intron 30.0%
AGTAGTTAAGGAAAGTGAAA+AGG - Chr4:295931-295950 MsG0480018108.01.T01:intron 30.0%
AGTTGTGTAAATTAAAGACC+CGG - Chr4:297098-297117 MsG0480018108.01.T01:intron 30.0%
ATAATATTGCGGAAATTGAG+GGG + Chr4:296814-296833 None:intergenic 30.0%
ATCAATCAATCATCAATGTC+AGG - Chr4:296346-296365 MsG0480018108.01.T01:intron 30.0%
ATGCTCATTAGTAAAGTGAT+TGG + Chr4:302886-302905 None:intergenic 30.0%
ATTATTTGAGCTGTGAATTG+TGG - Chr4:299423-299442 MsG0480018108.01.T01:intron 30.0%
ATTTGAATGCACTATCTTAC+CGG - Chr4:302460-302479 MsG0480018108.01.T01:intron 30.0%
CAATATATTTAAACTGACGC+AGG - Chr4:301753-301772 MsG0480018108.01.T01:intron 30.0%
CACTTAAGCTTAATTAGTTC+AGG + Chr4:297940-297959 None:intergenic 30.0%
CAGATATGTATTAGACATAC+TGG - Chr4:302587-302606 MsG0480018108.01.T01:CDS 30.0%
CAGATTAGAGAAATGATGTT+TGG + Chr4:302151-302170 None:intergenic 30.0%
CAGTATGTCTAATACATATC+TGG + Chr4:302589-302608 None:intergenic 30.0%
CATAATATTGCGGAAATTGA+GGG + Chr4:296815-296834 None:intergenic 30.0%
CATGCAGATATATTACCATT+AGG + Chr4:298762-298781 None:intergenic 30.0%
CTAAACTGTGCATAATATTG+CGG + Chr4:296825-296844 None:intergenic 30.0%
CTAGCAACATATGTGTATAT+CGG - Chr4:302032-302051 MsG0480018108.01.T01:intron 30.0%
CTCAATCTTACTGATATAGA+AGG + Chr4:302212-302231 None:intergenic 30.0%
CTCTTAGAATCAAAAGAACT+AGG + Chr4:301487-301506 None:intergenic 30.0%
CTTAAGCTTAATTAGTTCAG+GGG + Chr4:297938-297957 None:intergenic 30.0%
CTTGATATTTCGTAATACCT+AGG - Chr4:299829-299848 MsG0480018108.01.T01:three_prime_UTR 30.0%
GAATGAATGAAAAAAGAGAG+CGG + Chr4:296133-296152 None:intergenic 30.0%
GAATGATCATAGTTAATCTG+GGG + Chr4:301022-301041 None:intergenic 30.0%
GACCATATAGAAAACAACTA+GGG - Chr4:297585-297604 MsG0480018108.01.T01:intron 30.0%
GAGAGTAAAAATTAGATTGG+AGG - Chr4:302990-303009 MsG0480018108.01.T01:CDS 30.0%
GAGCATAAAACATATATGCT+AGG - Chr4:298331-298350 MsG0480018108.01.T01:intron 30.0%
GATGGTTGGAAAAACTAAAT+TGG - Chr4:297292-297311 MsG0480018108.01.T01:intron 30.0%
GGAATATTATTAAGCACTAG+AGG - Chr4:297361-297380 MsG0480018108.01.T01:intron 30.0%
GGAATTACCTGAAACAAATT+AGG + Chr4:296687-296706 None:intergenic 30.0%
GGAATTCTCATCATTGTATA+AGG - Chr4:299231-299250 MsG0480018108.01.T01:intron 30.0%
GGATGAAATACTTATTCTTG+AGG - Chr4:297313-297332 MsG0480018108.01.T01:intron 30.0%
GGCGATTAATGTATTAAAGA+GGG + Chr4:300122-300141 None:intergenic 30.0%
GGTATGGATATATATGTGAT+GGG - Chr4:302696-302715 MsG0480018108.01.T01:intron 30.0%
GTAGCAGTAGTAATACATAA+TGG + Chr4:296001-296020 None:intergenic 30.0%
GTAGTTAAGGAAAGTGAAAA+GGG - Chr4:295932-295951 MsG0480018108.01.T01:intron 30.0%
TACTTTGGTTGAGATAACAT+TGG - Chr4:297987-298006 MsG0480018108.01.T01:intron 30.0%
TAGAATCAGAAATGGTATCT+AGG + Chr4:302495-302514 None:intergenic 30.0%
TAGGAAATTATCCATTTCCA+TGG - Chr4:296054-296073 MsG0480018108.01.T01:intron 30.0%
TATCAAAAGCAAATTGAACG+TGG + Chr4:298228-298247 None:intergenic 30.0%
TATGTATTACTACTGCTACT+AGG - Chr4:296002-296021 MsG0480018108.01.T01:intron 30.0%
TATTACTCCTCAAGAAATGT+TGG - Chr4:298309-298328 MsG0480018108.01.T01:intron 30.0%
TATTATTTCCCTGTTCAATG+AGG + Chr4:303038-303057 None:intergenic 30.0%
TATTTACCTTCAGTTTCAAG+AGG - Chr4:298074-298093 MsG0480018108.01.T01:intron 30.0%
TCATCATCATCAAAAATGTC+AGG + Chr4:300735-300754 None:intergenic 30.0%
TCTGCATCAAATCAAAACTT+TGG - Chr4:298718-298737 MsG0480018108.01.T01:intron 30.0%
TGACCATATAGAAAACAACT+AGG - Chr4:297584-297603 MsG0480018108.01.T01:intron 30.0%
TGATGAATAGTTCGATTGTA+AGG - Chr4:300749-300768 MsG0480018108.01.T01:intron 30.0%
TGCAAACTTATAAAAGATCG+TGG + Chr4:298593-298612 None:intergenic 30.0%
TGCTCATTAGTAAAGTGATT+GGG + Chr4:302885-302904 None:intergenic 30.0%
TGGAGTTTAATGCATATTCT+AGG - Chr4:301972-301991 MsG0480018108.01.T01:intron 30.0%
TGTTGAAATCTATGGTGATT+TGG + Chr4:299543-299562 None:intergenic 30.0%
TGTTGTGTAAATTAAAGACC+CGG - Chr4:301352-301371 MsG0480018108.01.T01:intron 30.0%
TTAAACTCCAACATTTCTTG+AGG + Chr4:301962-301981 None:intergenic 30.0%
TTTAATACATTAATCGCCCT+TGG - Chr4:300124-300143 MsG0480018108.01.T01:intron 30.0%
TTTGAACTTACTGCTTTATG+GGG - Chr4:303077-303096 MsG0480018108.01.T01:CDS 30.0%
! AATCTAGTTCCTTTGATTCT+AGG - Chr4:297226-297245 MsG0480018108.01.T01:intron 30.0%
! ACATATGTGAAATTTTCACC+TGG - Chr4:302309-302328 MsG0480018108.01.T01:intron 30.0%
! ACGATCTTTTATAAGTTTGC+AGG - Chr4:298592-298611 MsG0480018108.01.T01:intron 30.0%
! AGACTTGTGGTTAAATTTTG+CGG + Chr4:299916-299935 None:intergenic 30.0%
! ATAATGCTCTTTTGGATTGT+AGG - Chr4:298968-298987 MsG0480018108.01.T01:intron 30.0%
! CTGGAAGGTATATATATGAT+GGG - Chr4:298900-298919 MsG0480018108.01.T01:intron 30.0%
! GCAATACTTGTTGAAATCTA+TGG + Chr4:299551-299570 None:intergenic 30.0%
! TAATGCTCTTTTGGATTGTA+GGG - Chr4:298969-298988 MsG0480018108.01.T01:intron 30.0%
! TTACGAGTATAATGCTCTTT+TGG - Chr4:298960-298979 MsG0480018108.01.T01:intron 30.0%
! TTCTTTCTTTGAGTTCAATG+TGG - Chr4:301125-301144 MsG0480018108.01.T01:intron 30.0%
! TTTTAATATGTGGTTAGGCT+AGG + Chr4:301536-301555 None:intergenic 30.0%
!! ACAGCTTTTAGAAATCAGAA+AGG + Chr4:297862-297881 None:intergenic 30.0%
!! CAGCTTTTAGAAATCAGAAA+GGG + Chr4:297861-297880 None:intergenic 30.0%
!! CCCAATTGATTTTAACAAGT+TGG - Chr4:296397-296416 MsG0480018108.01.T01:intron 30.0%
!! GATTTTCTTTTATGATGGTG+AGG - Chr4:302170-302189 MsG0480018108.01.T01:intron 30.0%
!! GGAATTTTGAGAAATCACAA+TGG + Chr4:297628-297647 None:intergenic 30.0%
!! TTAGTTTTTCCAACCATCTA+AGG + Chr4:297290-297309 None:intergenic 30.0%
!!! CATCATTTCGTTGTTTTTGA+AGG - Chr4:296156-296175 MsG0480018108.01.T01:intron 30.0%
!!! TTGCTAGGATTTGGTTTTTT+AGG - Chr4:296965-296984 MsG0480018108.01.T01:intron 30.0%
AAAGAGGGAAAATGATGGTA+AGG + Chr4:296532-296551 None:intergenic 35.0%
AAAGATCATGGTAGTATTGC+TGG + Chr4:302388-302407 None:intergenic 35.0%
AAATGTTCTCAAGATGGATG+TGG + Chr4:297733-297752 None:intergenic 35.0%
AATACATATCTGGTCTGCAA+TGG + Chr4:302579-302598 None:intergenic 35.0%
AATCTGGGGAAATCAAAAGT+AGG + Chr4:301008-301027 None:intergenic 35.0%
ACAATGATGAGAATTCCTTG+TGG + Chr4:299228-299247 None:intergenic 35.0%
AGAATCATCATGTGCATACT+AGG + Chr4:300182-300201 None:intergenic 35.0%
AGAGATATTGTAAGATCTGC+CGG + Chr4:302637-302656 None:intergenic 35.0%
AGCATCATACCAACTAAAGA+AGG + Chr4:302283-302302 None:intergenic 35.0%
AGCTAATGTACTTTCCAAAC+TGG + Chr4:297508-297527 None:intergenic 35.0%
AGTATACTTCATCTTGGACT+AGG - Chr4:297012-297031 MsG0480018108.01.T01:intron 35.0%
AGTTACAAGCAAAGAAAACG+GGG - Chr4:297409-297428 MsG0480018108.01.T01:intron 35.0%
AGTTGATTGCATTTGCAAGA+AGG + Chr4:300981-301000 None:intergenic 35.0%
ATGAAAAAAGAGAGCGGAAT+TGG + Chr4:296127-296146 None:intergenic 35.0%
ATTATTAAGCACTAGAGGGT+TGG - Chr4:297366-297385 MsG0480018108.01.T01:intron 35.0%
ATTCACTCCTCAAGAAATGT+TGG - Chr4:301952-301971 MsG0480018108.01.T01:intron 35.0%
ATTGATGTAGGGCAAATGTT+TGG + Chr4:300241-300260 None:intergenic 35.0%
ATTTGAGAAAACCGTTACCA+AGG + Chr4:300001-300020 None:intergenic 35.0%
CAGCTTGAACATGTTTACTT+TGG - Chr4:297972-297991 MsG0480018108.01.T01:intron 35.0%
CATATATATCCATACCTTCC+TGG + Chr4:302692-302711 None:intergenic 35.0%
CATCATCAAAAATGTCAGGA+TGG + Chr4:300731-300750 None:intergenic 35.0%
CCATCATATATATACCTTCC+AGG + Chr4:298902-298921 None:intergenic 35.0%
GATTTAAAGATGAACCGTTG+AGG + Chr4:297839-297858 None:intergenic 35.0%
GCATAATATTGCGGAAATTG+AGG + Chr4:296816-296835 None:intergenic 35.0%
GGATACAGTACTTGAAAGAA+AGG + Chr4:296494-296513 None:intergenic 35.0%
GGGCGATTAATGTATTAAAG+AGG + Chr4:300123-300142 None:intergenic 35.0%
GTAAGGAAGGAAGAAATAGA+TGG + Chr4:296515-296534 None:intergenic 35.0%
GTTGTGTAAATTAAAGACCC+GGG - Chr4:297099-297118 MsG0480018108.01.T01:intron 35.0%
TAAAAGCAATCACTGGTAAC+AGG + Chr4:301171-301190 None:intergenic 35.0%
TAAAATATGGAAATGGGGCA+TGG + Chr4:298276-298295 None:intergenic 35.0%
TAAGGAAAGTGAAAAGGGTA+TGG - Chr4:295937-295956 MsG0480018108.01.T01:intron 35.0%
TAATATTGCGGAAATTGAGG+GGG + Chr4:296813-296832 None:intergenic 35.0%
TACTAGGAAATGTATAGCTC+TGG + Chr4:300166-300185 None:intergenic 35.0%
TATATTTGTGAACGGCCTAA+TGG - Chr4:298744-298763 MsG0480018108.01.T01:intron 35.0%
TATCTGGGGAAATCAAAAGT+AGG + Chr4:296754-296773 None:intergenic 35.0%
TATTTGATTCTCAAGGAGCA+TGG - Chr4:297468-297487 MsG0480018108.01.T01:intron 35.0%
TCAATAGAAGAACGTTGAAG+AGG + Chr4:296262-296281 None:intergenic 35.0%
TCACGCTTATTTGATTCTCA+AGG - Chr4:297461-297480 MsG0480018108.01.T01:intron 35.0%
TCTTCAACGTTCTTCTATTG+AGG - Chr4:296261-296280 MsG0480018108.01.T01:intron 35.0%
TGATTACCTCTTGAAACTGA+AGG + Chr4:298083-298102 None:intergenic 35.0%
TTATGCTCCAACATTTCTTG+AGG + Chr4:298319-298338 None:intergenic 35.0%
TTCTTTCTTAGAGTTCAAGC+TGG - Chr4:296870-296889 MsG0480018108.01.T01:intron 35.0%
TTGAACTTACTGCTTTATGG+GGG - Chr4:303078-303097 MsG0480018108.01.T01:CDS 35.0%
TTGAGAAGCTAAATTACGGA+TGG + Chr4:300855-300874 None:intergenic 35.0%
TTGTATTGTAGGAAATCGGT+CGG - Chr4:302773-302792 MsG0480018108.01.T01:intron 35.0%
TTTGAGAAAACCGTTACCAA+GGG + Chr4:300000-300019 None:intergenic 35.0%
! AAGTGAAAAGGGTATGGATT+TGG - Chr4:295943-295962 MsG0480018108.01.T01:intron 35.0%
! ATGACGCTCTTTTGTATTGT+AGG - Chr4:302762-302781 MsG0480018108.01.T01:intron 35.0%
! ATGATAGTGTGTTTGCATGA+AGG - Chr4:302553-302572 MsG0480018108.01.T01:intron 35.0%
! CAATGAGGAGAATTCCTTTT+GGG + Chr4:303023-303042 None:intergenic 35.0%
! CCTGGAAGGTATATATATGA+TGG - Chr4:298899-298918 MsG0480018108.01.T01:intron 35.0%
! CCTTACATTCTAGAAGTCAT+AGG + Chr4:299659-299678 None:intergenic 35.0%
! CTATATCAAGTTAGCCTCAA+CGG - Chr4:297822-297841 MsG0480018108.01.T01:intron 35.0%
! TCAATGAGGAGAATTCCTTT+TGG + Chr4:303024-303043 None:intergenic 35.0%
! TTAACAAGTTGGATGGAACT+TGG - Chr4:296408-296427 MsG0480018108.01.T01:intron 35.0%
! TTATACAGTGTGTTTTTCCC+CGG - Chr4:302615-302634 MsG0480018108.01.T01:CDS 35.0%
!! CCTATGACTTCTAGAATGTA+AGG - Chr4:299656-299675 MsG0480018108.01.T01:intron 35.0%
!! CTCCCTAGTTGTTTTCTATA+TGG + Chr4:297590-297609 None:intergenic 35.0%
!! GAAATTGAGCTTTGAAAGCA+CGG + Chr4:298868-298887 None:intergenic 35.0%
!! GAGCATTCCTAATTTGTTTC+AGG - Chr4:296677-296696 MsG0480018108.01.T01:intron 35.0%
!! GTTTTGAATAGTTGGCCAAA+AGG + Chr4:301587-301606 None:intergenic 35.0%
!! TTTTCCAACCATCTAAGGTT+AGG + Chr4:297285-297304 None:intergenic 35.0%
!!! ACTTGCTACTTTTTGGTTGA+AGG - Chr4:299286-299305 MsG0480018108.01.T01:intron 35.0%
!!! CTTGCTACTTTTTGGTTGAA+GGG - Chr4:299287-299306 MsG0480018108.01.T01:intron 35.0%
!!! TTCATTTTGAGGTCAGCTAA+AGG - Chr4:299576-299595 MsG0480018108.01.T01:intron 35.0%
!!! TTGCTACTTTTTGGTTGAAG+GGG - Chr4:299288-299307 MsG0480018108.01.T01:intron 35.0%
AAACATGTTCAAGCTGACGA+AGG + Chr4:297968-297987 None:intergenic 40.0%
AAAGATCGTGGTAGTATTGC+TGG + Chr4:298581-298600 None:intergenic 40.0%
AACCACACCAGTGTAATGAA+AGG + Chr4:299750-299769 None:intergenic 40.0%
AACCTTTCATTACACTGGTG+TGG - Chr4:299745-299764 MsG0480018108.01.T01:three_prime_UTR 40.0%
AATCCGCAGATCAGCAATAA+TGG + Chr4:299701-299720 None:intergenic 40.0%
AATGTGGAAGGAAGGAACAT+GGG - Chr4:296371-296390 MsG0480018108.01.T01:intron 40.0%
ACAAATTAGGAATGCTCCAG+CGG + Chr4:296674-296693 None:intergenic 40.0%
ACATTAAATCGTGGGTACAC+TGG - Chr4:299502-299521 MsG0480018108.01.T01:intron 40.0%
ACATTAATCGCCCTTGGTAA+CGG - Chr4:300130-300149 MsG0480018108.01.T01:intron 40.0%
AGATATTGTAAGATCTGCCG+GGG + Chr4:302635-302654 None:intergenic 40.0%
AGCATCATACCAACCAAAGA+AGG + Chr4:298475-298494 None:intergenic 40.0%
AGGAATTCTCCTCATTGAAC+AGG - Chr4:303026-303045 MsG0480018108.01.T01:CDS 40.0%
AGGGAAAATGATGGTAAGGA+AGG + Chr4:296528-296547 None:intergenic 40.0%
ATGGAGAGGAAGAAATAGAC+TGG - Chr4:299191-299210 MsG0480018108.01.T01:intron 40.0%
ATTGCGAATAACACCTCCAT+TGG + Chr4:296646-296665 None:intergenic 40.0%
CAAACCAAAGCTTCTCTTTC+CGG + Chr4:295901-295920 None:intergenic 40.0%
CAGAGAATAACTGTCCAGTT+TGG - Chr4:297491-297510 MsG0480018108.01.T01:intron 40.0%
CATGCAAACACACTATCATC+AGG + Chr4:302552-302571 None:intergenic 40.0%
CGTGTCTTCGTTGGAAAATT+TGG - Chr4:302736-302755 MsG0480018108.01.T01:intron 40.0%
CTTTCCTTCTGTCATGAGAT+AGG - Chr4:296581-296600 MsG0480018108.01.T01:intron 40.0%
GAAATAGTTCGTGTCTTCGT+TGG - Chr4:302727-302746 MsG0480018108.01.T01:intron 40.0%
GAACCATTATTGCTGATCTG+CGG - Chr4:299695-299714 MsG0480018108.01.T01:intron 40.0%
GAAGCTAAATTACGGATGGT+TGG + Chr4:300851-300870 None:intergenic 40.0%
GACACGAACTATTTCAACAG+TGG + Chr4:302722-302741 None:intergenic 40.0%
GAGATATTGTAAGATCTGCC+GGG + Chr4:302636-302655 None:intergenic 40.0%
GATGGGGAAGTGAAATTTCA+GGG + Chr4:298392-298411 None:intergenic 40.0%
GATTGCATTTGCAAGAAGGT+AGG + Chr4:300977-300996 None:intergenic 40.0%
GCATATGCATTGCTAGGATT+TGG - Chr4:296956-296975 MsG0480018108.01.T01:intron 40.0%
GCCAACTATTCAAAACATCC+CGG - Chr4:301591-301610 MsG0480018108.01.T01:intron 40.0%
GGAATTCTCCTCATTGAACA+GGG - Chr4:303027-303046 MsG0480018108.01.T01:CDS 40.0%
GGATATGCATATGCATTGCT+AGG - Chr4:296950-296969 MsG0480018108.01.T01:intron 40.0%
TAAATTGTGTGAACAGCTGC+AGG - Chr4:302351-302370 MsG0480018108.01.T01:intron 40.0%
TATGGCCAATTCCAAAACGA+CGG + Chr4:302968-302987 None:intergenic 40.0%
TATGTCCAATTCCTCAACCA+CGG + Chr4:299172-299191 None:intergenic 40.0%
TCAAACCTCAAATTCCTGTG+AGG - Chr4:302663-302682 MsG0480018108.01.T01:CDS 40.0%
TCATCAATGTCAGGTGAATG+TGG - Chr4:296355-296374 MsG0480018108.01.T01:intron 40.0%
TCTCAAAATTCCTCCACAAG+AGG - Chr4:297636-297655 MsG0480018108.01.T01:intron 40.0%
TGAACTTACTGCTTTATGGG+GGG - Chr4:303079-303098 MsG0480018108.01.T01:CDS 40.0%
TGATGGGGAAGTGAAATTTC+AGG + Chr4:298393-298412 None:intergenic 40.0%
TGCCAAGTTCACTCTTGTAT+CGG - Chr4:298044-298063 MsG0480018108.01.T01:intron 40.0%
TGGAAGAGAATGAGAACATC+AGG + Chr4:296455-296474 None:intergenic 40.0%
TGGACTGACAAGAGTAAACT+TGG + Chr4:301652-301671 None:intergenic 40.0%
TGGATGGATCTCATTCTACT+AGG + Chr4:297713-297732 None:intergenic 40.0%
TGGTTGAGGAATTGGACATA+TGG - Chr4:299172-299191 MsG0480018108.01.T01:intron 40.0%
TTGGATTGTAGGGAATCAGT+TGG - Chr4:298979-298998 MsG0480018108.01.T01:intron 40.0%
! AAGTTCTGGTCTTCGAAAGA+GGG + Chr4:300683-300702 None:intergenic 40.0%
! AATTTAGCCTTCATCGCAGT+AGG - Chr4:301327-301346 MsG0480018108.01.T01:intron 40.0%
! AGAGCGGAATTGGATTAGAA+AGG + Chr4:296117-296136 None:intergenic 40.0%
! GAGAATTCCTTGTGGACTAT+AGG + Chr4:299220-299239 None:intergenic 40.0%
! GAGAATTCCTTTTGGGCTAT+AGG + Chr4:303016-303035 None:intergenic 40.0%
! GAGCGGAATTGGATTAGAAA+GGG + Chr4:296116-296135 None:intergenic 40.0%
! TGGCACTTTGGAAGTAGTTA+AGG - Chr4:295919-295938 MsG0480018108.01.T01:intron 40.0%
!! GGAACAAGTTGATTGCAAGA+CGG + Chr4:296733-296752 None:intergenic 40.0%
!!! TACTTTTTGGTTGAAGGGGA+GGG - Chr4:299292-299311 MsG0480018108.01.T01:intron 40.0%
!!! TCGTTTTGGAATTGGCCATA+AGG - Chr4:302968-302987 MsG0480018108.01.T01:CDS 40.0%
AACTACTGATCAACGCTCGT+CGG + Chr4:299104-299123 None:intergenic 45.0%
AAGGTGAGCGTAATTGGTCA+AGG - Chr4:295863-295882 MsG0480018108.01.T01:three_prime_UTR 45.0%
AATGAGATCCCCTACACAAG+AGG - Chr4:297677-297696 MsG0480018108.01.T01:intron 45.0%
ACACCTAGCCTAACCTTAGA+TGG - Chr4:297274-297293 MsG0480018108.01.T01:intron 45.0%
ACATTGGTGCAGGAACAAGA+AGG - Chr4:298003-298022 MsG0480018108.01.T01:intron 45.0%
ACCACTTCTTTGCTCAACTC+GGG + Chr4:297442-297461 None:intergenic 45.0%
AGAAAGGGAACCTACTACCT+GGG + Chr4:296101-296120 None:intergenic 45.0%
AGAGTCCTCTTTGTGTGTCT+TGG + Chr4:296231-296250 None:intergenic 45.0%
AGGAAAATGTCAGAAGTGGG+TGG - Chr4:300643-300662 MsG0480018108.01.T01:intron 45.0%
ATAAGCCGTGGTTGAGGAAT+TGG - Chr4:299164-299183 MsG0480018108.01.T01:intron 45.0%
ATCGTTGAAGCCCTTGGTAA+CGG - Chr4:299987-300006 MsG0480018108.01.T01:CDS 45.0%
ATCTTGAACTGTGATCTGCC+AGG + Chr4:302330-302349 None:intergenic 45.0%
ATGACTCGAACCGTTACCAA+GGG + Chr4:300143-300162 None:intergenic 45.0%
ATGTAGCTCCTGCATGATGA+AGG + Chr4:301617-301636 None:intergenic 45.0%
ATGTGGTTAGGCTAGGTGTT+GGG + Chr4:301529-301548 None:intergenic 45.0%
ATGTTCAAGCTGACGAAGGA+AGG + Chr4:297964-297983 None:intergenic 45.0%
ATTTGTGTGCACTGTCGTAC+TGG - Chr4:298649-298668 MsG0480018108.01.T01:intron 45.0%
CAAAGCTCAATTTCCCGTGA+GGG - Chr4:298874-298893 MsG0480018108.01.T01:intron 45.0%
CAAATTCCTGTGAGGAATCC+AGG - Chr4:302671-302690 MsG0480018108.01.T01:CDS 45.0%
CAACGATGGGGATCAACTTA+GGG + Chr4:299974-299993 None:intergenic 45.0%
CAACTTGACTACTGCGATGA+AGG + Chr4:297083-297102 None:intergenic 45.0%
CAATGTCAGGTGAATGTGGA+AGG - Chr4:296359-296378 MsG0480018108.01.T01:intron 45.0%
CACAATGGCCACTTCATCAA+CGG + Chr4:297613-297632 None:intergenic 45.0%
CCTTCTGTCATGAGATAGGT+CGG - Chr4:296585-296604 MsG0480018108.01.T01:intron 45.0%
CTAGCCTAACCTTAGATGGT+TGG - Chr4:297278-297297 MsG0480018108.01.T01:intron 45.0%
GAATGCGACATTGCCTTCTT+TGG - Chr4:298459-298478 MsG0480018108.01.T01:intron 45.0%
GAATGTGGAAGGAAGGAACA+TGG - Chr4:296370-296389 MsG0480018108.01.T01:intron 45.0%
GACCACTTCTTTGCTCAACT+CGG + Chr4:297443-297462 None:intergenic 45.0%
GACCGATACAAGAGTGAACT+TGG + Chr4:298049-298068 None:intergenic 45.0%
GAGAGGAAGAAATAGACTGG+AGG - Chr4:299194-299213 MsG0480018108.01.T01:intron 45.0%
GAGGAATTGGACATATGGAG+AGG - Chr4:299177-299196 MsG0480018108.01.T01:intron 45.0%
GATGTAGGGCAAATGTTTGG+TGG + Chr4:300238-300257 None:intergenic 45.0%
GATTGTAGGGAATCAGTTGG+AGG - Chr4:298982-299001 MsG0480018108.01.T01:intron 45.0%
GGAAAATGTCAGAAGTGGGT+GGG - Chr4:300644-300663 MsG0480018108.01.T01:intron 45.0%
GGATTCCTCACAGGAATTTG+AGG + Chr4:302671-302690 None:intergenic 45.0%
GGTTGAGATAACATTGGTGC+AGG - Chr4:297993-298012 MsG0480018108.01.T01:intron 45.0%
GTAGGGGATCTCATTCTACT+AGG + Chr4:297672-297691 None:intergenic 45.0%
GTTCTCAAGATGGATGTGGA+TGG + Chr4:297729-297748 None:intergenic 45.0%
TAGAAAGGGAACCTACTACC+TGG + Chr4:296102-296121 None:intergenic 45.0%
TATGTGGTTAGGCTAGGTGT+TGG + Chr4:301530-301549 None:intergenic 45.0%
TATTGTAGGAAATCGGTCGG+AGG - Chr4:302776-302795 MsG0480018108.01.T01:intron 45.0%
TCAAAGCTCAATTTCCCGTG+AGG - Chr4:298873-298892 MsG0480018108.01.T01:intron 45.0%
TCAACGATGGGGATCAACTT+AGG + Chr4:299975-299994 None:intergenic 45.0%
TCTCTCCAAGACACACAAAG+AGG - Chr4:296223-296242 MsG0480018108.01.T01:intron 45.0%
TGATGGAGCGTAACTGCTTA+AGG - Chr4:300823-300842 MsG0480018108.01.T01:intron 45.0%
TGTTAGCTAGCATGCAATCC+CGG + Chr4:301374-301393 None:intergenic 45.0%
TTACCAAGGGCTTCAACGAT+GGG + Chr4:299987-300006 None:intergenic 45.0%
TTAGCTAGCATACGCAATCC+CGG + Chr4:297120-297139 None:intergenic 45.0%
TTATTCGCAATGTTGTCCGC+TGG - Chr4:296655-296674 MsG0480018108.01.T01:intron 45.0%
! CAACCATCTAAGGTTAGGCT+AGG + Chr4:297280-297299 None:intergenic 45.0%
! CAAGTTCTGGTCTTCGAAAG+AGG + Chr4:300684-300703 None:intergenic 45.0%
! CGGAAAGAGAAGCTTTGGTT+TGG - Chr4:295899-295918 MsG0480018108.01.T01:intron 45.0%
! TTGCTCTCACCTTTGAGAAG+TGG - Chr4:297340-297359 MsG0480018108.01.T01:intron 45.0%
!! ATGCTTTTAGGTCGTGCTGT+TGG - Chr4:302830-302849 MsG0480018108.01.T01:intron 45.0%
!! GAAGCTTTGGTTTGGCACTT+TGG - Chr4:295907-295926 MsG0480018108.01.T01:intron 45.0%
!! GCCGGGATGTTTTGAATAGT+TGG + Chr4:301595-301614 None:intergenic 45.0%
!! GGAACAAGAAGGTGCTACAT+TGG - Chr4:298014-298033 MsG0480018108.01.T01:intron 45.0%
!! GGTATCTAGGTATCGACTAC+CGG + Chr4:302482-302501 None:intergenic 45.0%
!!! CTACTTTTTGGTTGAAGGGG+AGG - Chr4:299291-299310 MsG0480018108.01.T01:intron 45.0%
!!! GGTTTGTTGCTCTCACCTTT+TGG - Chr4:301569-301588 MsG0480018108.01.T01:intron 45.0%
!! AAAAAAAAAAAAAAAAAAAG+TGG + Chr4:300060-300079 None:intergenic 5.0%
!! TATAATAACATATAAAAAAA+TGG - Chr4:297790-297809 MsG0480018108.01.T01:intron 5.0%
!! TATTAATATTAATTAGAAAA+AGG - Chr4:300605-300624 MsG0480018108.01.T01:intron 5.0%
!! TATTTAAAAATTAAAATATC+AGG + Chr4:299794-299813 None:intergenic 5.0%
!!! GTTTTTTTTTTTTTTTTTTA+AGG - Chr4:301824-301843 MsG0480018108.01.T01:intron 5.0%
!!! TTTTTTTATAGAAAAATAAA+AGG - Chr4:300576-300595 MsG0480018108.01.T01:intron 5.0%
AAAATGTCAGGATGGCCGAG+TGG + Chr4:300723-300742 None:intergenic 50.0%
AAGGAAGAGTAGCAGCAGCT+TGG + Chr4:296475-296494 None:intergenic 50.0%
ACGCTCGTCGGTAAAGTGAT+TGG + Chr4:299092-299111 None:intergenic 50.0%
ACTTACTGCTTTATGGGGGG+AGG - Chr4:303082-303101 MsG0480018108.01.T01:CDS 50.0%
AGATGGCATGGCCATGGAAA+TGG + Chr4:296068-296087 None:intergenic 50.0%
AGCGACACTTCCTCTTGTGT+AGG + Chr4:297690-297709 None:intergenic 50.0%
ATACCTTCCAGGATCCCTCA+CGG + Chr4:298891-298910 None:intergenic 50.0%
CAACATGCCTACTGCGATGA+AGG + Chr4:301337-301356 None:intergenic 50.0%
CAAGTCTTCGAAGTCCTGTG+CGG - Chr4:299929-299948 MsG0480018108.01.T01:CDS 50.0%
CACAGGACTTCGAAGACTTG+TGG + Chr4:299929-299948 None:intergenic 50.0%
CACCTCCATTGGAGCTATGA+CGG + Chr4:296635-296654 None:intergenic 50.0%
CAGTAACACTCGATAAGCCG+TGG - Chr4:299152-299171 MsG0480018108.01.T01:intron 50.0%
CCAATTCCAAAACGACGGCT+CGG + Chr4:302963-302982 None:intergenic 50.0%
CCGACCTATCTCATGACAGA+AGG + Chr4:296588-296607 None:intergenic 50.0%
CGAAGACCAGAACTTGAGTC+TGG - Chr4:300688-300707 MsG0480018108.01.T01:intron 50.0%
CGACACTTCCTCTTGTGTAG+GGG + Chr4:297688-297707 None:intergenic 50.0%
CGCTCGTCGGTAAAGTGATT+GGG + Chr4:299091-299110 None:intergenic 50.0%
CGTGCGACTCCTAGAATCAA+AGG + Chr4:297238-297257 None:intergenic 50.0%
CTTACTGCTTTATGGGGGGA+GGG - Chr4:303083-303102 MsG0480018108.01.T01:CDS 50.0%
CTTCTCTTTCCGGATGCATG+CGG + Chr4:295891-295910 None:intergenic 50.0%
GAAAGGGAACCTACTACCTG+GGG + Chr4:296100-296119 None:intergenic 50.0%
GAATGCCGTCATAGCTCCAA+TGG - Chr4:296627-296646 MsG0480018108.01.T01:intron 50.0%
GACGTCACATTTCATGCCCA+AGG - Chr4:300021-300040 MsG0480018108.01.T01:CDS 50.0%
GATGACTCGAACCGTTACCA+AGG + Chr4:300144-300163 None:intergenic 50.0%
GCATCCGGAAAGAGAAGCTT+TGG - Chr4:295894-295913 MsG0480018108.01.T01:three_prime_UTR 50.0%
GCGACACTTCCTCTTGTGTA+GGG + Chr4:297689-297708 None:intergenic 50.0%
GCGACATTGCCTTCTTTGGT+TGG - Chr4:298463-298482 MsG0480018108.01.T01:intron 50.0%
GGCAAGAAGGTGAGCGTAAT+TGG - Chr4:295857-295876 MsG0480018108.01.T01:three_prime_UTR 50.0%
GTCAGGTGAATGTGGAAGGA+AGG - Chr4:296363-296382 MsG0480018108.01.T01:intron 50.0%
GTGAGGAATCCAGGAAGGTA+TGG - Chr4:302680-302699 MsG0480018108.01.T01:CDS 50.0%
GTTACCAAGGGCTTCAACGA+TGG + Chr4:299988-300007 None:intergenic 50.0%
GTTAGCTAGCATGCAATCCC+GGG + Chr4:301373-301392 None:intergenic 50.0%
TACCAAGGGCTTCAACGATG+GGG + Chr4:299986-300005 None:intergenic 50.0%
TACCTTCCTGGATTCCTCAC+AGG + Chr4:302680-302699 None:intergenic 50.0%
TAGCTAGCATACGCAATCCC+GGG + Chr4:297119-297138 None:intergenic 50.0%
TGGCGAGTGAGTTGTACCTT+GGG + Chr4:300040-300059 None:intergenic 50.0%
TTCCTGTGAGGAATCCAGGA+AGG - Chr4:302675-302694 MsG0480018108.01.T01:CDS 50.0%
TTGGAGGCCTATAGCCCAAA+AGG - Chr4:303006-303025 MsG0480018108.01.T01:CDS 50.0%
!! CTTTTAGGTCGTGCTGTTGG+TGG - Chr4:302833-302852 MsG0480018108.01.T01:intron 50.0%
AGCGACACTTCCTCTTGTGG+AGG + Chr4:297649-297668 None:intergenic 55.0%
AGCTCCTGCATGATGAAGGC+CGG + Chr4:301613-301632 None:intergenic 55.0%
AGGAGCGACACTTCCTCTTG+TGG + Chr4:297652-297671 None:intergenic 55.0%
ATCCCCATCGTTGAAGCCCT+TGG - Chr4:299981-300000 MsG0480018108.01.T01:CDS 55.0%
CAATTTCCCGTGAGGGATCC+TGG - Chr4:298881-298900 MsG0480018108.01.T01:intron 55.0%
CACTCGATAAGCCGTGGTTG+AGG - Chr4:299158-299177 MsG0480018108.01.T01:intron 55.0%
CATACGACTGTGTCGTCTGC+TGG - Chr4:300889-300908 MsG0480018108.01.T01:intron 55.0%
CTGGAGGCCTATAGTCCACA+AGG - Chr4:299210-299229 MsG0480018108.01.T01:intron 55.0%
GTCAAGGAACCGCATGCATC+CGG - Chr4:295879-295898 MsG0480018108.01.T01:three_prime_UTR 55.0%
GTGGCGAGTGAGTTGTACCT+TGG + Chr4:300041-300060 None:intergenic 55.0%
TACCTTCCAGGATCCCTCAC+GGG + Chr4:298890-298909 None:intergenic 55.0%
TGCCGTCATAGCTCCAATGG+AGG - Chr4:296630-296649 MsG0480018108.01.T01:intron 55.0%
! AAGGCGCCAGACTCAAGTTC+TGG + Chr4:300697-300716 None:intergenic 55.0%
! ATGCTTTTGGGCCGTGCTGT+TGG - Chr4:299036-299055 MsG0480018108.01.T01:intron 55.0%
! CTAGGGAGCCGTTGATGAAG+TGG - Chr4:297602-297621 MsG0480018108.01.T01:intron 55.0%
! GCCCGAGTTGAGCAAAGAAG+TGG - Chr4:297438-297457 MsG0480018108.01.T01:intron 55.0%
! TGGTCTTCGAAAGAGGGCGT+GGG + Chr4:300677-300696 None:intergenic 55.0%
! TTAGGTCGTGCTGTTGGTGG+AGG - Chr4:302836-302855 MsG0480018108.01.T01:intron 55.0%
!!! CCGAGCCGTCGTTTTGGAAT+TGG - Chr4:302960-302979 MsG0480018108.01.T01:intron 55.0%
ACCTACTACCTGGGGAGCAG+CGG + Chr4:296092-296111 None:intergenic 60.0%
CAGGATGGCCGAGTGGTCTA+AGG + Chr4:300716-300735 None:intergenic 60.0%
CATCCCGGCCTTCATCATGC+AGG - Chr4:301606-301625 MsG0480018108.01.T01:intron 60.0%
CTCCTCCTCCACCAACAGCA+CGG + Chr4:299050-299069 None:intergenic 60.0%
GCTCCTGCATGATGAAGGCC+GGG + Chr4:301612-301631 None:intergenic 60.0%
GTCTGGCGCCTTAGACCACT+CGG - Chr4:300705-300724 MsG0480018108.01.T01:intron 60.0%
TCCTGTGCAGTAAGCCGCAC+AGG + Chr4:299946-299965 None:intergenic 60.0%
TCCTGTGCGGCTTACTGCAC+AGG - Chr4:299942-299961 MsG0480018108.01.T01:CDS 60.0%
TTCCCGTGAGGGATCCTGGA+AGG - Chr4:298885-298904 MsG0480018108.01.T01:intron 60.0%
! CATTCGCCGAGCCGTCGTTT+TGG - Chr4:302954-302973 MsG0480018108.01.T01:intron 60.0%
! CTGGTCTTCGAAAGAGGGCG+TGG + Chr4:300678-300697 None:intergenic 60.0%
!! CTTTTGGGCCGTGCTGTTGG+TGG - Chr4:299039-299058 MsG0480018108.01.T01:intron 60.0%
AGCGGCAGATGGCATGGCCA+TGG + Chr4:296074-296093 None:intergenic 65.0%
! GGTCGTGCTGTTGGTGGAGG+AGG - Chr4:302839-302858 MsG0480018108.01.T01:intron 65.0%
! TTGGGCCGTGCTGTTGGTGG+AGG - Chr4:299042-299061 MsG0480018108.01.T01:intron 65.0%
ACCTGGGGAGCAGCGGCAGA+TGG + Chr4:296085-296104 None:intergenic 70.0%
GCCGCTGCTCCCCAGGTAGT+AGG - Chr4:296088-296107 MsG0480018108.01.T01:intron 70.0%
GGGAGCAGCGGCAGATGGCA+TGG + Chr4:296080-296099 None:intergenic 70.0%
! GGCCGTGCTGTTGGTGGAGG+AGG - Chr4:299045-299064 MsG0480018108.01.T01:intron 70.0%
GCCATCTGCCGCTGCTCCCC+AGG - Chr4:296081-296100 MsG0480018108.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 295855 303214 295855 ID=MsG0480018108.01;Name=MsG0480018108.01
Chr4 mRNA 295855 303214 295855 ID=MsG0480018108.01.T01;Parent=MsG0480018108.01;Name=MsG0480018108.01.T01;_AED=0.44;_eAED=0.45;_QI=101|0.33|0.71|1|0.83|0.71|7|235|245
Chr4 exon 295855 295913 295855 ID=MsG0480018108.01.T01:exon:599;Parent=MsG0480018108.01.T01
Chr4 exon 299726 300079 299726 ID=MsG0480018108.01.T01:exon:598;Parent=MsG0480018108.01.T01
Chr4 exon 300163 300218 300163 ID=MsG0480018108.01.T01:exon:597;Parent=MsG0480018108.01.T01
Chr4 exon 300974 301094 300974 ID=MsG0480018108.01.T01:exon:596;Parent=MsG0480018108.01.T01
Chr4 exon 302371 302466 302371 ID=MsG0480018108.01.T01:exon:595;Parent=MsG0480018108.01.T01
Chr4 exon 302562 302701 302562 ID=MsG0480018108.01.T01:exon:594;Parent=MsG0480018108.01.T01
Chr4 exon 302967 303214 302967 ID=MsG0480018108.01.T01:exon:593;Parent=MsG0480018108.01.T01
Chr4 five_prime_UTR 303114 303214 303114 ID=MsG0480018108.01.T01:five_prime_utr;Parent=MsG0480018108.01.T01
Chr4 CDS 302967 303113 302967 ID=MsG0480018108.01.T01:cds;Parent=MsG0480018108.01.T01
Chr4 CDS 302562 302701 302562 ID=MsG0480018108.01.T01:cds;Parent=MsG0480018108.01.T01
Chr4 CDS 302371 302466 302371 ID=MsG0480018108.01.T01:cds;Parent=MsG0480018108.01.T01
Chr4 CDS 300974 301094 300974 ID=MsG0480018108.01.T01:cds;Parent=MsG0480018108.01.T01
Chr4 CDS 300163 300218 300163 ID=MsG0480018108.01.T01:cds;Parent=MsG0480018108.01.T01
Chr4 CDS 299902 300079 299902 ID=MsG0480018108.01.T01:cds;Parent=MsG0480018108.01.T01
Chr4 three_prime_UTR 299726 299901 299726 ID=MsG0480018108.01.T01:three_prime_utr;Parent=MsG0480018108.01.T01
Chr4 three_prime_UTR 295855 295913 295855 ID=MsG0480018108.01.T01:three_prime_utr;Parent=MsG0480018108.01.T01
Gene Sequence

>MsG0480018108.01.T01

ATGGATTTGGCTTTCAATTTCAATTTCAATTTCAATTCATCACCATTATGTATTACTACTGCTACTAGGAGAAGCCACAATTTCAATTGCAATGTTAGTAGGAAATTATCCATTTCCATGGCCATGCCATCTGCCGCTGCTCCCCAGGTGAATGTGGAAGGAAGGAACATGGGTCACCCAATTGATTTTAACAAGTTGGATGGAACTTGGCGCTTGCAATATACTTCTGCTCCTGATGTTCTCATTCTCTTCCAAGCTGCTGCTACTCTTCCTTTCTTTCAAGTACTGTCGGACAAATATTTCAGAAATTTGAATGCCGTCATAGCTCCAATGGAGGTGTTATTCGCAATGTTGTCCGCTGGAGCATTCCTAATTTGTTTCAGCTTGAACATGTTTACTTTGGTTGAGATAACATTGGTGCAGGAACAAGAAGGTGCTACATTGGTTGTATCTGCCAAGTTCACTCTTGTATCGGTCCGAAATATTTACCTTCAGTTTCAAGAGATATTGCAATATCTCCGTGCTTTCAAAGCTCAATTTCCCGTGAGGGATCCTGGAAGGGAATCAGTTGGAGGATTATATTATCTGAGTTATTTGGATGATAATATGCTTTTGGGCCGTGCTGTTGGTGGAGGAGGAGTATTTGTGTTTACGAGAGCCCAATCACTTTACCGACGAGCGTTGATCAGTAGTTTAAGACTTTTACTGTTTGACAGCAATAACAGTAACACTCGATAA

Protein sequence

>MsG0480018108.01.T01

MDLAFNFNFNFNSSPLCITTATRRSHNFNCNVSRKLSISMAMPSAAAPQVNVEGRNMGHPIDFNKLDGTWRLQYTSAPDVLILFQAAATLPFFQVLSDKYFRNLNAVIAPMEVLFAMLSAGAFLICFSLNMFTLVEITLVQEQEGATLVVSAKFTLVSVRNIYLQFQEILQYLRAFKAQFPVRDPGRESVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSLYRRALISSLRLLLFDSNNSNTR*