AlfalfaGEDB | MsG0280006417.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006417.01

KEGG: K03841
GO: GO:0005975 GO:0016791 GO:0042132 GO:0042578
PFAM: PF00316

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006417.01.T01	XP_003593121.1	86.096	374	18	4	1	372	1	342	0	635

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006417.01.T01	Q42649	72.581	372	68	4	1	370	1	340	0	538

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006417.01.T01	G7IL84	86.096	374	18	4	1	372	1	342	0.0	635

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000147.01	MsG0280006417.01	0.848681	5.249379e-60	9.710013e-57
MsG0180000148.01	MsG0280006417.01	0.868994	4.314430e-66	1.592760e-62
MsG0180000929.01	MsG0280006417.01	0.807721	4.402438e-50	2.470195e-47
MsG0180001029.01	MsG0280006417.01	0.801761	7.730988e-49	3.722133e-46
MsG0180003992.01	MsG0280006417.01	0.822263	2.600535e-53	2.165854e-50
MsG0180004773.01	MsG0280006417.01	-0.829151	6.043741e-55	6.133599e-52
MsG0180005542.01	MsG0280006417.01	0.802775	4.780208e-49	2.361881e-46
MsG0180005571.01	MsG0280006417.01	0.813892	2.033007e-51	1.344116e-48
MsG0180005648.01	MsG0280006417.01	0.814123	1.808522e-51	1.203157e-48
MsG0280006417.01	MsG0280008405.01	0.831455	1.653416e-55	1.795226e-52
MsG0280006417.01	MsG0280010019.01	0.801310	9.564815e-49	4.553136e-46
MsG0280006417.01	MsG0280010047.01	0.817756	2.796038e-52	2.054096e-49
MsG0280006417.01	MsG0280010802.01	0.800387	1.475919e-48	6.863508e-46
MsG0280006417.01	MsG0280011165.01	0.819135	1.361360e-52	1.038786e-49
MsG0280006417.01	MsG0280011193.01	0.817961	2.512522e-52	1.856139e-49
MsG0280006417.01	MsG0280011203.01	0.831822	1.342284e-55	1.473489e-52
MsG0280006417.01	MsG0380013300.01	0.802494	5.463607e-49	2.680071e-46
MsG0280006417.01	MsG0380015369.01	0.802035	6.789356e-49	3.291793e-46
MsG0280006417.01	MsG0380016086.01	0.814323	1.633715e-51	1.092811e-48
MsG0280006417.01	MsG0380016718.01	-0.802106	6.566827e-49	3.189602e-46
MsG0280006417.01	MsG0380017168.01	0.803796	2.938445e-49	1.490280e-46
MsG0280006417.01	MsG0380017173.01	0.816644	4.971664e-52	3.542726e-49
MsG0280006417.01	MsG0380017859.01	0.811746	6.001761e-51	3.745398e-48
MsG0280006417.01	MsG0380018070.01	0.811974	5.352607e-51	3.360785e-48
MsG0280006417.01	MsG0480019217.01	0.850542	1.587823e-60	3.120723e-57
MsG0280006417.01	MsG0480020497.01	0.800281	1.551008e-48	7.193421e-46
MsG0280006417.01	MsG0480022308.01	0.814953	1.184679e-51	8.060153e-49
MsG0280006417.01	MsG0480022311.01	0.809731	1.636761e-50	9.685403e-48
MsG0280006417.01	MsG0480022383.01	0.847048	1.479468e-59	2.596997e-56
MsG0280006417.01	MsG0480022655.01	0.812938	3.294946e-51	2.122715e-48
MsG0280006417.01	MsG0480022935.01	-0.831958	1.242883e-55	1.369758e-52
MsG0280006417.01	MsG0480023107.01	0.825299	5.055756e-54	4.590110e-51
MsG0280006417.01	MsG0480023267.01	0.800815	1.207572e-48	5.676608e-46
MsG0280006417.01	MsG0480023303.01	0.802536	5.355768e-49	2.630034e-46
MsG0280006417.01	MsG0480023528.01	0.812996	3.200787e-51	2.065300e-48
MsG0280006417.01	MsG0480023921.01	0.809165	2.164741e-50	1.261794e-47
MsG0280006417.01	MsG0580024408.01	0.823595	1.272652e-53	1.100691e-50
MsG0280006417.01	MsG0580026019.01	0.813285	2.765395e-51	1.798362e-48
MsG0280006417.01	MsG0580030133.01	0.823355	1.448509e-53	1.244182e-50
MsG0280006417.01	MsG0580030135.01	0.826851	2.161787e-54	2.051453e-51
MsG0280006417.01	MsG0680031139.01	0.801421	9.077042e-49	4.332965e-46
MsG0280006417.01	MsG0680034317.01	0.800632	1.315922e-48	6.157597e-46
MsG0280006417.01	MsG0780036472.01	0.812190	4.801530e-51	3.032696e-48
MsG0280006417.01	MsG0780036661.01	0.816312	5.900871e-52	4.167166e-49
MsG0280006417.01	MsG0780036839.01	0.801593	8.367991e-49	4.011773e-46
MsG0280006417.01	MsG0780038263.01	-0.831684	1.452136e-55	1.587435e-52
MsG0280006417.01	MsG0780040497.01	0.800721	1.261666e-48	5.916909e-46
MsG0280006417.01	MsG0780040805.01	0.801750	7.769483e-49	3.739695e-46
MsG0280006417.01	MsG0780040806.01	0.810074	1.380816e-50	8.244387e-48
MsG0280006417.01	MsG0780041510.01	0.803392	3.562562e-49	1.788154e-46
MsG0280006417.01	MsG0880042591.01	0.807989	3.861123e-50	2.181719e-47
MsG0280006417.01	MsG0880042740.01	0.806595	7.621793e-50	4.153371e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006417.01.T01	MTR_2g008030	86.096	374	18	4	1	372	1	342	0.0	635
MsG0280006417.01.T01	MTR_6g035305	74.387	367	60	4	1	365	1	335	0.0	543
MsG0280006417.01.T01	MTR_7g066120	45.455	374	152	6	11	365	71	411	1.55e-99	301
MsG0280006417.01.T01	MTR_0776s0010	36.769	359	189	9	7	358	284	611	1.80e-72	246
MsG0280006417.01.T01	MTR_4g093620	37.647	340	159	7	32	361	87	383	1.62e-69	223
MsG0280006417.01.T01	MTR_3g070100	30.249	281	173	6	96	372	119	380	1.27e-23	101

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006417.01.T01	AT1G43670	71.159	371	73	4	1	369	1	339	0.0	527
MsG0280006417.01.T01	AT3G54050	45.161	372	154	7	11	365	79	417	9.66e-99	299
MsG0280006417.01.T01	AT3G54050	45.161	372	154	7	11	365	79	417	9.66e-99	299
MsG0280006417.01.T01	AT5G64380	38.261	345	169	11	32	369	89	396	3.97e-66	215
MsG0280006417.01.T01	AT3G55800	30.325	277	170	6	96	368	126	383	6.45e-24	102

Find 74 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCATCAATCACATTGTTCT+TGG	0.178736	2:-1687788	MsG0280006417.01.T01:CDS
AGAATAAATCTTCCTTTCTT+TGG	0.236966	2:+1685766	None:intergenic
CACTATTGCATATAGATCTT+TGG	0.249832	2:-1686259	MsG0280006417.01.T01:intron
ACTGACTTGCCACGCTGTGC+TGG	0.263816	2:+1686519	None:intergenic
AAATCGAATTTAAAGCTAAT+TGG	0.275112	2:+1687168	None:intergenic
CTTACCTTAGCTTTCCATTT+GGG	0.275310	2:+1685367	None:intergenic
CATAGTTGTGTTTGATCCTT+TGG	0.288689	2:-1686409	MsG0280006417.01.T01:CDS
CCAAAGTCTCTTAGGTATAT+TGG	0.298619	2:-1685550	MsG0280006417.01.T01:CDS
TATGCAGAATCCAAAGAAAA+TGG	0.326692	2:-1684580	MsG0280006417.01.T01:CDS
TGTGCGTCCGCTGCTGATTA+AGG	0.328499	2:+1686722	None:intergenic
ATTGATTGTGGAGTTTCAAT+AGG	0.341565	2:-1686372	MsG0280006417.01.T01:CDS
CACCATATAGCAATGTTCTA+TGG	0.354552	2:+1685421	None:intergenic
TCTTACCTTAGCTTTCCATT+TGG	0.373307	2:+1685366	None:intergenic
GTTCACCACCAAAGTCTCTT+AGG	0.374034	2:-1685558	MsG0280006417.01.T01:CDS
CTGACTTGCCACGCTGTGCT+GGG	0.376754	2:+1686520	None:intergenic
TCGTAGCTTCCAAGGAATAT+TGG	0.381749	2:+1684628	None:intergenic
TGGTGTGTCCGCACATGTTT+TGG	0.387812	2:+1687188	None:intergenic
AATGCATGTACCTTGATGTT+TGG	0.391145	2:+1685893	None:intergenic
TTTGTGCTTAGCACAGGAAA+TGG	0.404030	2:-1685968	MsG0280006417.01.T01:CDS
ATGCATGTACCTTGATGTTT+GGG	0.428381	2:+1685894	None:intergenic
TTTACACTTGATCCTTCCCT+TGG	0.433839	2:-1685935	MsG0280006417.01.T01:CDS
GAAGATTTATTCTGTGAATG+AGG	0.437154	2:-1685756	MsG0280006417.01.T01:CDS
GTCCATAGAACATTGCTATA+TGG	0.440321	2:-1685423	MsG0280006417.01.T01:CDS
CCAATATACCTAAGAGACTT+TGG	0.448075	2:+1685550	None:intergenic
GCAGCTGGTTACTGCATGTA+TGG	0.456073	2:-1686166	MsG0280006417.01.T01:CDS
CTGATTTGATGACAATAACT+AGG	0.457076	2:-1687865	MsG0280006417.01.T01:CDS
AGCACAGGAAATGGAGTGAA+TGG	0.467256	2:-1685959	MsG0280006417.01.T01:CDS
ATTGCAACCTGGGAGCAGTT+TGG	0.473530	2:-1686191	MsG0280006417.01.T01:CDS
AACTCCACAATCAATGTTTG+AGG	0.474075	2:+1686380	None:intergenic
AACAAAACTCACTTGAACAT+TGG	0.474961	2:+1687578	None:intergenic
TGACTTGCCACGCTGTGCTG+GGG	0.480596	2:+1686521	None:intergenic
GATCGATCGCCAATATTCCT+TGG	0.483711	2:-1684637	MsG0280006417.01.T01:CDS
GCTGATAAGAAAAGCCCAAA+TGG	0.486498	2:-1685381	MsG0280006417.01.T01:CDS
GGGAGCAGTTTGGTAGCAGC+TGG	0.487734	2:-1686181	MsG0280006417.01.T01:CDS
TGGTGTCTCCAGCAAGTCCT+AGG	0.492171	2:+1687598	None:intergenic
TAAATTCGATTTGCCTCCAC+CGG	0.496937	2:-1687157	MsG0280006417.01.T01:intron
TCCAAAACTTACTTGGCCGT+TGG	0.497852	2:+1685710	None:intergenic
AAGATTTATTCTGTGAATGA+GGG	0.501287	2:-1685755	MsG0280006417.01.T01:CDS
TTGCAGTTTGTGCTTAGCAC+AGG	0.508953	2:-1685974	MsG0280006417.01.T01:intron
GTTGAAGATGCATTGCAACC+TGG	0.510015	2:-1686202	MsG0280006417.01.T01:CDS
GTGCCTTCTTGTTTCAGAAG+AGG	0.512489	2:-1686565	MsG0280006417.01.T01:CDS
CAGTTCTGTTAGCATCTGCT+TGG	0.515272	2:+1687885	None:intergenic
TTGAAGATGCATTGCAACCT+GGG	0.517948	2:-1686201	MsG0280006417.01.T01:CDS
TTCTAATGAAGTATTTGTGA+AGG	0.533564	2:-1686745	MsG0280006417.01.T01:CDS
GTTGTGTTTGATCCTTTGGA+TGG	0.544716	2:-1686405	MsG0280006417.01.T01:CDS
CAATTTCATCGTAGCTTCCA+AGG	0.546062	2:+1684620	None:intergenic
GACTTGCCACGCTGTGCTGG+GGG	0.552070	2:+1686522	None:intergenic
TGCTCCATCAAATATGACAT+TGG	0.555129	2:+1684986	None:intergenic
GGTTCCTCAAACATTGATTG+TGG	0.568496	2:-1686384	MsG0280006417.01.T01:CDS
AACAATGTGATTGATGAGAA+TGG	0.568531	2:+1687793	None:intergenic
TCATATTTGATGGAGCAAGC+AGG	0.570588	2:-1684980	MsG0280006417.01.T01:CDS
GAGTCAATATGAACTCTCCA+AGG	0.570901	2:+1685918	None:intergenic
TGTTTGTTCTTCTGTTAACA+AGG	0.573073	2:-1687756	MsG0280006417.01.T01:intron
AAGTTTGCATAAACCGGTGG+AGG	0.573205	2:+1687144	None:intergenic
ACTTCATAGATACCAAAGAA+AGG	0.574423	2:-1685778	MsG0280006417.01.T01:intron
AGCTTTCACAGGAAAACAAA+GGG	0.576524	2:-1684951	MsG0280006417.01.T01:intron
GCAGGAGGTCAAGCTTTCAC+AGG	0.578987	2:-1684962	MsG0280006417.01.T01:CDS
AGTCTCTTAGGTATATTGGC+AGG	0.582669	2:-1685546	MsG0280006417.01.T01:intron
CAACCTCTTCTGAAACAAGA+AGG	0.591219	2:+1686562	None:intergenic
CATGTATGGAAGCTCTTGCA+CGG	0.591600	2:-1686152	MsG0280006417.01.T01:intron
AAAGCCCAAATGGAAAGCTA+AGG	0.593648	2:-1685371	MsG0280006417.01.T01:intron
TTTGGTGGTGAACTGTCTTG+TGG	0.594367	2:+1685568	None:intergenic
GCTGCTACCAAACTGCTCCC+AGG	0.598305	2:+1686184	None:intergenic
ATTGACTCACCCAAACATCA+AGG	0.604776	2:-1685903	MsG0280006417.01.T01:CDS
CATAGAACATTGCTATATGG+TGG	0.610102	2:-1685420	MsG0280006417.01.T01:CDS
AATATGAACTCTCCAAGGGA+AGG	0.611205	2:+1685923	None:intergenic
AAGCTTTCACAGGAAAACAA+AGG	0.624169	2:-1684952	MsG0280006417.01.T01:CDS
GTGAAGGCCTTAATCAGCAG+CGG	0.626415	2:-1686729	MsG0280006417.01.T01:CDS
ATATACCTAAGAGACTTTGG+TGG	0.639800	2:+1685553	None:intergenic
AGTCAATATGAACTCTCCAA+GGG	0.668311	2:+1685919	None:intergenic
ATGTTTGAGGAACCATCCAA+AGG	0.670132	2:+1686393	None:intergenic
TCAAAGTATGCTGAATCACG+TGG	0.673339	2:-1687824	MsG0280006417.01.T01:CDS
TATTTGATGGAGCAAGCAGG+AGG	0.695622	2:-1684977	MsG0280006417.01.T01:CDS
AAATACTTCCAAAACATGTG+CGG	0.698454	2:-1687196	MsG0280006417.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATTAACATATAGTTATT+AGG	-	Chr2:1686618-1686637	MsG0280006417.01.T01:intron	10.0%
!!	TTTATTTAATATGAGTTTAA+TGG	-	Chr2:1685046-1685065	MsG0280006417.01.T01:intron	10.0%
!!!	AGAAAAAAAAAATTTTGAAA+TGG	-	Chr2:1685475-1685494	MsG0280006417.01.T01:intron	10.0%
!!!	TTGATAAATATAGAATATTT+TGG	+	Chr2:1685974-1685993	None:intergenic	10.0%
!!	ATGTTTAAACTAATAACTTA+TGG	-	Chr2:1687411-1687430	MsG0280006417.01.T01:intron	15.0%
!!	GTTGAAAATACAATATTAAA+TGG	+	Chr2:1685221-1685240	None:intergenic	15.0%
!!!	AAAAAATTTTGAAATGGTTT+TGG	-	Chr2:1685481-1685500	MsG0280006417.01.T01:intron	15.0%
!!!	ACAATATTAAATGGATTTAA+AGG	+	Chr2:1685212-1685231	None:intergenic	15.0%
!!!	TAATTCATATGCATTTTATT+TGG	-	Chr2:1685831-1685850	MsG0280006417.01.T01:intron	15.0%
!!	AAATTTGACTGTAAATTATC+AGG	-	Chr2:1687439-1687458	MsG0280006417.01.T01:intron	20.0%
!!	AATAAAATGAAGAAACTTGA+AGG	+	Chr2:1686985-1687004	None:intergenic	20.0%
!!	AATTTGACTGTAAATTATCA+GGG	-	Chr2:1687440-1687459	MsG0280006417.01.T01:intron	20.0%
!!	ACGATTAAATAACTGATATA+AGG	+	Chr2:1687717-1687736	None:intergenic	20.0%
!!	AGTATTATTTCAGATTTAGA+TGG	+	Chr2:1685008-1685027	None:intergenic	20.0%
!!	CACGTAACATTATAAATTAA+AGG	+	Chr2:1684927-1684946	None:intergenic	20.0%
!!	CTTATAAAAATGAATTAGAG+TGG	-	Chr2:1685148-1685167	MsG0280006417.01.T01:intron	20.0%
!!	TAACATTCTATTAGCATAAT+CGG	+	Chr2:1686351-1686370	None:intergenic	20.0%
!!!	AAATCGAATTTAAAGCTAAT+TGG	+	Chr2:1685301-1685320	None:intergenic	20.0%
!!!	AAATTGCATTTTACTAAATC+AGG	+	Chr2:1685869-1685888	None:intergenic	20.0%
!!!	AAGGAATTCAAGTATTTTAA+AGG	+	Chr2:1685380-1685399	None:intergenic	20.0%
!!!	AGGAATTCAAGTATTTTAAA+GGG	+	Chr2:1685379-1685398	None:intergenic	20.0%
!!!	CACTCTAATTCATTTTTATA+AGG	+	Chr2:1685150-1685169	None:intergenic	20.0%
!!!	CTTTATTTTGTTCTTTTTGT+TGG	-	Chr2:1685790-1685809	MsG0280006417.01.T01:intron	20.0%
!!!	TAAAATGCAATTTTTTGCTT+TGG	-	Chr2:1685876-1685895	MsG0280006417.01.T01:intron	20.0%
!!!	TAGTTATTAGGTTTTTACTT+AGG	-	Chr2:1686630-1686649	MsG0280006417.01.T01:intron	20.0%
!	AAAATATAGCAATCAAGCTT+GGG	+	Chr2:1686147-1686166	None:intergenic	25.0%
!	AAACTGAAACATTCAATCAA+TGG	+	Chr2:1684818-1684837	None:intergenic	25.0%
!	AACTTGATGTAATAGAGATA+AGG	-	Chr2:1685340-1685359	MsG0280006417.01.T01:intron	25.0%
!	AACTTTATGTAGTTTGATCT+TGG	-	Chr2:1686955-1686974	MsG0280006417.01.T01:intron	25.0%
!	AAGATTTATTCTGTGAATGA+GGG	-	Chr2:1686711-1686730	MsG0280006417.01.T01:intron	25.0%
!	ACATATCATATAACACAACT+CGG	+	Chr2:1687395-1687414	None:intergenic	25.0%
!	ACTACATATCCCAATAATTT+AGG	+	Chr2:1687311-1687330	None:intergenic	25.0%
!	AGAATAAATCTTCCTTTCTT+TGG	+	Chr2:1686703-1686722	None:intergenic	25.0%
!	ATAGTGGTGAATAGAAAAAT+AGG	+	Chr2:1685667-1685686	None:intergenic	25.0%
!	CAGTTATTTAATCGTTGAAT+TGG	-	Chr2:1687722-1687741	MsG0280006417.01.T01:intron	25.0%
!	CCAAGTATTATAAGTTTCTA+TGG	+	Chr2:1685572-1685591	None:intergenic	25.0%
!	CCATAGAAACTTATAATACT+TGG	-	Chr2:1685569-1685588	MsG0280006417.01.T01:CDS	25.0%
!	GTTAGAAATTACTACTATGA+TGG	+	Chr2:1685124-1685143	None:intergenic	25.0%
!	TAAAATATAGCAATCAAGCT+TGG	+	Chr2:1686148-1686167	None:intergenic	25.0%
!	TAGTGGTGAATAGAAAAATA+GGG	+	Chr2:1685666-1685685	None:intergenic	25.0%
!	TCACACAAAAAAGATTTAGA+TGG	+	Chr2:1684977-1684996	None:intergenic	25.0%
!	TGAGTGTGTAATTAAATTCA+AGG	+	Chr2:1685399-1685418	None:intergenic	25.0%
!	TTCTATTCACCACTATTTAA+GGG	-	Chr2:1685671-1685690	MsG0280006417.01.T01:intron	25.0%
!	TTTCTATTCACCACTATTTA+AGG	-	Chr2:1685670-1685689	MsG0280006417.01.T01:intron	25.0%
!!	AATTCAGATTCCTTTTCTAT+CGG	+	Chr2:1687210-1687229	None:intergenic	25.0%
!!	TTCTAATGAAGTATTTGTGA+AGG	-	Chr2:1685721-1685740	MsG0280006417.01.T01:intron	25.0%
!!	TTTTCCAATGTCATATTTGA+TGG	-	Chr2:1687476-1687495	MsG0280006417.01.T01:intron	25.0%
!!!	ACCTAAGGACATTTTAAAAT+CGG	-	Chr2:1687238-1687257	MsG0280006417.01.T01:intron	25.0%
!!!	TCATACGATAATTTTTTTGC+AGG	-	Chr2:1687777-1687796	MsG0280006417.01.T01:CDS	25.0%
!!!	TTTCAGTTTTTTTTACTGAC+AGG	-	Chr2:1684829-1684848	MsG0280006417.01.T01:intron	25.0%
	AAATACTTCCAAAACATGTG+CGG	-	Chr2:1685270-1685289	MsG0280006417.01.T01:intron	30.0%
	AAATGATTCTCCGATAGAAA+AGG	-	Chr2:1687197-1687216	MsG0280006417.01.T01:CDS	30.0%
	AACAAAACTCACTTGAACAT+TGG	+	Chr2:1684891-1684910	None:intergenic	30.0%
	AACAATGTGATTGATGAGAA+TGG	+	Chr2:1684676-1684695	None:intergenic	30.0%
	ACATTTCACAAAGTTTCAAG+AGG	-	Chr2:1685618-1685637	MsG0280006417.01.T01:intron	30.0%
	ACTTCATAGATACCAAAGAA+AGG	-	Chr2:1686688-1686707	MsG0280006417.01.T01:intron	30.0%
	ATGGAAATAGAGACACTTAA+AGG	+	Chr2:1685553-1685572	None:intergenic	30.0%
	ATTGATTGTGGAGTTTCAAT+AGG	-	Chr2:1686094-1686113	MsG0280006417.01.T01:intron	30.0%
	CAATTTATTCGATCAGAATC+AGG	+	Chr2:1686465-1686484	None:intergenic	30.0%
	CACTATTGCATATAGATCTT+TGG	-	Chr2:1686207-1686226	MsG0280006417.01.T01:CDS	30.0%
	CAGAATTTCCAAAACTTACT+TGG	+	Chr2:1686766-1686785	None:intergenic	30.0%
	GAAAAATGCACAATACAGTA+TGG	-	Chr2:1687012-1687031	MsG0280006417.01.T01:intron	30.0%
	GAAGATTTATTCTGTGAATG+AGG	-	Chr2:1686710-1686729	MsG0280006417.01.T01:intron	30.0%
	GTTCGAGAACCTAAATTATT+GGG	-	Chr2:1687299-1687318	MsG0280006417.01.T01:intron	30.0%
	GTTGGATGTTGATGTAAAAA+TGG	+	Chr2:1685084-1685103	None:intergenic	30.0%
	TACATCAAGTTTGCATAAAC+CGG	+	Chr2:1685331-1685350	None:intergenic	30.0%
	TATGCAGAATCCAAAGAAAA+TGG	-	Chr2:1687886-1687905	MsG0280006417.01.T01:CDS	30.0%
	TCATTTGATACTACATCTGA+TGG	-	Chr2:1687745-1687764	MsG0280006417.01.T01:intron	30.0%
	TCTATTCACCACTATTTAAG+GGG	-	Chr2:1685672-1685691	MsG0280006417.01.T01:intron	30.0%
	TGGAAATAGAGACACTTAAA+GGG	+	Chr2:1685552-1685571	None:intergenic	30.0%
	TGTTTGTTCTTCTGTTAACA+AGG	-	Chr2:1684710-1684729	MsG0280006417.01.T01:intron	30.0%
	TTAAAATGTCCTTAGGTCTT+AGG	+	Chr2:1687235-1687254	None:intergenic	30.0%
	TTCATGTTAACTCAAGAATC+AGG	+	Chr2:1686809-1686828	None:intergenic	30.0%
	TTCTGATCGAATAAATTGCA+CGG	-	Chr2:1686467-1686486	MsG0280006417.01.T01:intron	30.0%
!	CTGATTTGATGACAATAACT+AGG	-	Chr2:1684601-1684620	MsG0280006417.01.T01:CDS	30.0%
!	GATCGATCATGTATTTTCTT+AGG	+	Chr2:1687817-1687836	None:intergenic	30.0%
!	TTTTTCTTTCTCTAATGCAC+AGG	+	Chr2:1685462-1685481	None:intergenic	30.0%
!!	TATGTATGGAGTATTGCAAA+CGG	+	Chr2:1687335-1687354	None:intergenic	30.0%
!!!	AAATGGTTTTGGCATAACTT+TGG	-	Chr2:1685492-1685511	MsG0280006417.01.T01:intron	30.0%
!!!	TCCGATTTTAAAATGTCCTT+AGG	+	Chr2:1687242-1687261	None:intergenic	30.0%
	AACTCCACAATCAATGTTTG+AGG	+	Chr2:1686089-1686108	None:intergenic	35.0%
	AAGCTTTCACAGGAAAACAA+AGG	-	Chr2:1687514-1687533	MsG0280006417.01.T01:intron	35.0%
	AATGCATGTACCTTGATGTT+TGG	+	Chr2:1686576-1686595	None:intergenic	35.0%
	ACATTTGATCTAGCATCCTT+AGG	-	Chr2:1687157-1687176	MsG0280006417.01.T01:intron	35.0%
	AGCTTTCACAGGAAAACAAA+GGG	-	Chr2:1687515-1687534	MsG0280006417.01.T01:intron	35.0%
	AGTCAATATGAACTCTCCAA+GGG	+	Chr2:1686550-1686569	None:intergenic	35.0%
	ATATACCTAAGAGACTTTGG+TGG	+	Chr2:1686916-1686935	None:intergenic	35.0%
	ATGCATGTACCTTGATGTTT+GGG	+	Chr2:1686575-1686594	None:intergenic	35.0%
	CACCATATAGCAATGTTCTA+TGG	+	Chr2:1687048-1687067	None:intergenic	35.0%
	CATAGAACATTGCTATATGG+TGG	-	Chr2:1687046-1687065	MsG0280006417.01.T01:intron	35.0%
	CATAGTTGTGTTTGATCCTT+TGG	-	Chr2:1686057-1686076	MsG0280006417.01.T01:intron	35.0%
	CCAAAGTCTCTTAGGTATAT+TGG	-	Chr2:1686916-1686935	MsG0280006417.01.T01:intron	35.0%
	CCAATATACCTAAGAGACTT+TGG	+	Chr2:1686919-1686938	None:intergenic	35.0%
	CTATTCACCACTATTTAAGG+GGG	-	Chr2:1685673-1685692	MsG0280006417.01.T01:intron	35.0%
	CTCATCAATCACATTGTTCT+TGG	-	Chr2:1684678-1684697	MsG0280006417.01.T01:intron	35.0%
	GCATTATGTTGCAGCTAAAT+TGG	-	Chr2:1686591-1686610	MsG0280006417.01.T01:intron	35.0%
	GGTAAGACTGTGATATACTT+TGG	-	Chr2:1687116-1687135	MsG0280006417.01.T01:intron	35.0%
	GGTTCGAGAACCTAAATTAT+TGG	-	Chr2:1687298-1687317	MsG0280006417.01.T01:intron	35.0%
	GTCCATAGAACATTGCTATA+TGG	-	Chr2:1687043-1687062	MsG0280006417.01.T01:intron	35.0%
	TCCATACATAGATGAGAACT+TGG	-	Chr2:1687345-1687364	MsG0280006417.01.T01:intron	35.0%
	TGCTCCATCAAATATGACAT+TGG	+	Chr2:1687483-1687502	None:intergenic	35.0%
!	CTTACCTTAGCTTTCCATTT+GGG	+	Chr2:1687102-1687121	None:intergenic	35.0%
!	TCTTACCTTAGCTTTCCATT+TGG	+	Chr2:1687103-1687122	None:intergenic	35.0%
!!	ATGTATGGAGTATTGCAAAC+GGG	+	Chr2:1687334-1687353	None:intergenic	35.0%
!!!	AGTTTTTTTTACTGACAGGC+TGG	-	Chr2:1684833-1684852	MsG0280006417.01.T01:intron	35.0%
	AAAGCCCAAATGGAAAGCTA+AGG	-	Chr2:1687095-1687114	MsG0280006417.01.T01:intron	40.0%
	AATATGAACTCTCCAAGGGA+AGG	+	Chr2:1686546-1686565	None:intergenic	40.0%
	ACTAACTCTCCTAAGACCTA+AGG	+	Chr2:1687176-1687195	None:intergenic	40.0%
	AGTCTCTTAGGTATATTGGC+AGG	-	Chr2:1686920-1686939	MsG0280006417.01.T01:intron	40.0%
	ATCAAGTTTGCATAAACCGG+TGG	+	Chr2:1685328-1685347	None:intergenic	40.0%
	ATCTAGCATCCTTAGGTCTT+AGG	-	Chr2:1687164-1687183	MsG0280006417.01.T01:CDS	40.0%
	ATGTTTGAGGAACCATCCAA+AGG	+	Chr2:1686076-1686095	None:intergenic	40.0%
	CAAAAACTGGGATGAACCAA+CGG	-	Chr2:1686740-1686759	MsG0280006417.01.T01:CDS	40.0%
	CAATTTCATCGTAGCTTCCA+AGG	+	Chr2:1687849-1687868	None:intergenic	40.0%
	CTGAATTCTCCTAAGACCTA+AGG	-	Chr2:1687223-1687242	MsG0280006417.01.T01:intron	40.0%
	GAGTCAATATGAACTCTCCA+AGG	+	Chr2:1686551-1686570	None:intergenic	40.0%
	GCATCTCTGCATCTTCAATA+TGG	-	Chr2:1687620-1687639	MsG0280006417.01.T01:CDS	40.0%
	GCCAAGTTCTCATCTATGTA+TGG	+	Chr2:1687349-1687368	None:intergenic	40.0%
	GCTGATAAGAAAAGCCCAAA+TGG	-	Chr2:1687085-1687104	MsG0280006417.01.T01:intron	40.0%
	GTTGTGTTTGATCCTTTGGA+TGG	-	Chr2:1686061-1686080	MsG0280006417.01.T01:intron	40.0%
	TCAAAGTATGCTGAATCACG+TGG	-	Chr2:1684642-1684661	MsG0280006417.01.T01:CDS	40.0%
	TCATATTTGATGGAGCAAGC+AGG	-	Chr2:1687486-1687505	MsG0280006417.01.T01:intron	40.0%
	TCGTAGCTTCCAAGGAATAT+TGG	+	Chr2:1687841-1687860	None:intergenic	40.0%
	TTGAAGATGCATTGCAACCT+GGG	-	Chr2:1686265-1686284	MsG0280006417.01.T01:intron	40.0%
	TTTACACTTGATCCTTCCCT+TGG	-	Chr2:1686531-1686550	MsG0280006417.01.T01:CDS	40.0%
	TTTGTGCTTAGCACAGGAAA+TGG	-	Chr2:1686498-1686517	MsG0280006417.01.T01:intron	40.0%
!	ATTGACTCACCCAAACATCA+AGG	-	Chr2:1686563-1686582	MsG0280006417.01.T01:CDS	40.0%
!	CTACTATGATGGAAGTAGTG+TGG	+	Chr2:1685113-1685132	None:intergenic	40.0%
!	GGTTCCTCAAACATTGATTG+TGG	-	Chr2:1686082-1686101	MsG0280006417.01.T01:intron	40.0%
!	TAAATTCGATTTGCCTCCAC+CGG	-	Chr2:1685309-1685328	MsG0280006417.01.T01:intron	40.0%
!	TTGGGCTTTTCTTATCAGCA+GGG	+	Chr2:1687084-1687103	None:intergenic	40.0%
!	TTTGGGCTTTTCTTATCAGC+AGG	+	Chr2:1687085-1687104	None:intergenic	40.0%
!	TTTTTACTGACAGGCTGGAT+TGG	-	Chr2:1684838-1684857	MsG0280006417.01.T01:intron	40.0%
!!	CAACCTCTTCTGAAACAAGA+AGG	+	Chr2:1685907-1685926	None:intergenic	40.0%
!!!	TTTTTTGCAGGCACTTGACT+TGG	-	Chr2:1687789-1687808	MsG0280006417.01.T01:CDS	40.0%
	AAGTTTGCATAAACCGGTGG+AGG	+	Chr2:1685325-1685344	None:intergenic	45.0%
	AGCACAGGAAATGGAGTGAA+TGG	-	Chr2:1686507-1686526	MsG0280006417.01.T01:intron	45.0%
	ATGAGGGAAACGCCAAAAAC+TGG	-	Chr2:1686727-1686746	MsG0280006417.01.T01:CDS	45.0%
	CAGTTCTGTTAGCATCTGCT+TGG	+	Chr2:1684584-1684603	None:intergenic	45.0%
	CATGTATGGAAGCTCTTGCA+CGG	-	Chr2:1686314-1686333	MsG0280006417.01.T01:intron	45.0%
	GAAGTAGTGTGGTATCTCGT+TGG	+	Chr2:1685102-1685121	None:intergenic	45.0%
	GATCGATCGCCAATATTCCT+TGG	-	Chr2:1687829-1687848	MsG0280006417.01.T01:CDS	45.0%
	GCAAAAATCCTAGGACTTGC+TGG	-	Chr2:1684860-1684879	MsG0280006417.01.T01:intron	45.0%
	GTTCACCACCAAAGTCTCTT+AGG	-	Chr2:1686908-1686927	MsG0280006417.01.T01:intron	45.0%
	GTTGAAGATGCATTGCAACC+TGG	-	Chr2:1686264-1686283	MsG0280006417.01.T01:intron	45.0%
	TAGGTTCTCGAACCTGCTAT+GGG	+	Chr2:1687292-1687311	None:intergenic	45.0%
	TATTTGATGGAGCAAGCAGG+AGG	-	Chr2:1687489-1687508	MsG0280006417.01.T01:intron	45.0%
	TCCAAAACTTACTTGGCCGT+TGG	+	Chr2:1686759-1686778	None:intergenic	45.0%
	TGAGGGAAACGCCAAAAACT+GGG	-	Chr2:1686728-1686747	MsG0280006417.01.T01:CDS	45.0%
	TTAGGTTCTCGAACCTGCTA+TGG	+	Chr2:1687293-1687312	None:intergenic	45.0%
	TTCACCACTATTTAAGGGGG+AGG	-	Chr2:1685676-1685695	MsG0280006417.01.T01:intron	45.0%
	TTGCAGTTTGTGCTTAGCAC+AGG	-	Chr2:1686492-1686511	MsG0280006417.01.T01:intron	45.0%
!	ACCAACGGCCAAGTAAGTTT+TGG	-	Chr2:1686755-1686774	MsG0280006417.01.T01:CDS	45.0%
!	GTGCCTTCTTGTTTCAGAAG+AGG	-	Chr2:1685901-1685920	MsG0280006417.01.T01:CDS	45.0%
!!	GCTGGATTGGCAAAAATCCT+AGG	-	Chr2:1684851-1684870	MsG0280006417.01.T01:intron	45.0%
!!	TTTGGTGGTGAACTGTCTTG+TGG	+	Chr2:1686901-1686920	None:intergenic	45.0%
!!!	CGTTGGTTCATCCCAGTTTT+TGG	+	Chr2:1686742-1686761	None:intergenic	45.0%
	ATTGCAACCTGGGAGCAGTT+TGG	-	Chr2:1686275-1686294	MsG0280006417.01.T01:intron	50.0%
	GCAGCTGGTTACTGCATGTA+TGG	-	Chr2:1686300-1686319	MsG0280006417.01.T01:intron	50.0%
	GGGGGAGGAGCAAAAGAAAT+TGG	-	Chr2:1685691-1685710	MsG0280006417.01.T01:intron	50.0%
	GTGAAGGCCTTAATCAGCAG+CGG	-	Chr2:1685737-1685756	MsG0280006417.01.T01:CDS	50.0%
	TATGGGCCTAACTCCTGAGT+CGG	+	Chr2:1687275-1687294	None:intergenic	50.0%
	TGCTCCTCCCCCTTAAATAG+TGG	+	Chr2:1685683-1685702	None:intergenic	50.0%
!	TGGTGTGTCCGCACATGTTT+TGG	+	Chr2:1685281-1685300	None:intergenic	50.0%
	GCAGGAGGTCAAGCTTTCAC+AGG	-	Chr2:1687504-1687523	MsG0280006417.01.T01:intron	55.0%
	TCAGGAGTTAGGCCCATAGC+AGG	-	Chr2:1687277-1687296	MsG0280006417.01.T01:intron	55.0%
	TGGTGTCTCCAGCAAGTCCT+AGG	+	Chr2:1684871-1684890	None:intergenic	55.0%
!	TGTGCGTCCGCTGCTGATTA+AGG	+	Chr2:1685747-1685766	None:intergenic	55.0%
!!	GGACATTTCCTTGCCGACTC+AGG	-	Chr2:1687259-1687278	MsG0280006417.01.T01:intron	55.0%
!!	TCCTTGCCGACTCAGGAGTT+AGG	-	Chr2:1687266-1687285	MsG0280006417.01.T01:intron	55.0%
	GCCTAACTCCTGAGTCGGCA+AGG	+	Chr2:1687270-1687289	None:intergenic	60.0%
	GCTGCTACCAAACTGCTCCC+AGG	+	Chr2:1686285-1686304	None:intergenic	60.0%
!	CTGACTTGCCACGCTGTGCT+GGG	+	Chr2:1685949-1685968	None:intergenic	60.0%
!	GGGAGCAGTTTGGTAGCAGC+TGG	-	Chr2:1686285-1686304	MsG0280006417.01.T01:intron	60.0%
!	TGACTTGCCACGCTGTGCTG+GGG	+	Chr2:1685948-1685967	None:intergenic	60.0%
!!	ACTGACTTGCCACGCTGTGC+TGG	+	Chr2:1685950-1685969	None:intergenic	60.0%
	ATTGTGCCCCCAGCACAGCG+TGG	-	Chr2:1685938-1685957	MsG0280006417.01.T01:CDS	65.0%
	GACTTGCCACGCTGTGCTGG+GGG	+	Chr2:1685947-1685966	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	1684573	1687915	1684573	ID=MsG0280006417.01;Name=MsG0280006417.01
Chr2	mRNA	1684573	1687915	1684573	ID=MsG0280006417.01.T01;Parent=MsG0280006417.01;Name=MsG0280006417.01.T01;_AED=0.49;_eAED=0.56;_QI=0\|0\|0\|1\|0.75\|0.76\|13\|0\|372
Chr2	exon	1687757	1687915	1687757	ID=MsG0280006417.01.T01:exon:247;Parent=MsG0280006417.01.T01
Chr2	exon	1687590	1687653	1687590	ID=MsG0280006417.01.T01:exon:246;Parent=MsG0280006417.01.T01
Chr2	exon	1687158	1687219	1687158	ID=MsG0280006417.01.T01:exon:245;Parent=MsG0280006417.01.T01
Chr2	exon	1686722	1686796	1686722	ID=MsG0280006417.01.T01:exon:244;Parent=MsG0280006417.01.T01
Chr2	exon	1686525	1686586	1686525	ID=MsG0280006417.01.T01:exon:243;Parent=MsG0280006417.01.T01
Chr2	exon	1686368	1686434	1686368	ID=MsG0280006417.01.T01:exon:242;Parent=MsG0280006417.01.T01
Chr2	exon	1686153	1686266	1686153	ID=MsG0280006417.01.T01:exon:241;Parent=MsG0280006417.01.T01
Chr2	exon	1685891	1685990	1685891	ID=MsG0280006417.01.T01:exon:240;Parent=MsG0280006417.01.T01
Chr2	exon	1685722	1685791	1685722	ID=MsG0280006417.01.T01:exon:239;Parent=MsG0280006417.01.T01
Chr2	exon	1685547	1685612	1685547	ID=MsG0280006417.01.T01:exon:238;Parent=MsG0280006417.01.T01
Chr2	exon	1685372	1685458	1685372	ID=MsG0280006417.01.T01:exon:237;Parent=MsG0280006417.01.T01
Chr2	exon	1684952	1685027	1684952	ID=MsG0280006417.01.T01:exon:236;Parent=MsG0280006417.01.T01
Chr2	exon	1684573	1684689	1684573	ID=MsG0280006417.01.T01:exon:235;Parent=MsG0280006417.01.T01
Chr2	CDS	1687757	1687915	1687757	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1687590	1687653	1687590	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1687158	1687219	1687158	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1686722	1686796	1686722	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1686525	1686586	1686525	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1686368	1686434	1686368	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1686153	1686266	1686153	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1685891	1685990	1685891	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1685722	1685791	1685722	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1685547	1685612	1685547	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1685372	1685458	1685372	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1684952	1685027	1684952	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01
Chr2	CDS	1684573	1684689	1684573	ID=MsG0280006417.01.T01:cds;Parent=MsG0280006417.01.T01

Gene Sequence

>MsG0280006417.01.T01

ATGGATCACCAAGCAGATGCTAACAGAACTGATTTGATGACAATAACTAGGTTTGTTCTGAATGAGCAATCAAAGTATGCTGAATCACGTGGAGATTTCACCATTCTCATCAATCACATTGTTCTTGGCTGCAAATTTGTTTGTTCTTCTGTTAACAAGTTTTTTTTACTGACAGGCTGGATTGGCAAAAATCCTAGGACTTGCTGGAGACACCAATGTTCAACAAATACTTCCAAAACATGTGCGGACACACCAATTAGCTTTAAATTCGATTTGCCTCCACCGGGGGAGGAGCAAAAGAAATTGGATGTGATTTCTAATGAAGTATTTGTGAAGGCCTTAATCAGCAGCGGACGCACATGCCTTCTTGTTTCAGAAGAGGTTGACGATGCTATCATTGTGCCCCCAGCACAGCGTGGCAAATACATAGTTGTGTTTGATCCTTTGGATGGTTCCTCAAACATTGATTGTGGAGTTTCAATAGGAACTATCTTTGGTATTTACACAGTGAAAGATACAACTGAAGTTAGCGTTGAAGATGCATTGCAACCTGGGAGCAGTTTGGTAGCAGCTGGTTACTGCATGTATGGAAGCTCTTGCACGTTTGTGCTTAGCACAGGAAATGGAGTGAATGGTTTTACACTTGATCCTTCCCTTGGAGAGTTCATATTGACTCACCCAAACATCAAGGTACATGCATTATATACCAAAGAAAGGAAGATTTATTCTGTGAATGAGGGAAACGCCAAAAACTGGGATGAACCAACGGCCAAATACGTAGAAAATTGCAAGTTTCCACAAGACAGTTCACCACCAAAGTCTCTTAGGTATATTGGCAGTATGGTAGCTGATGTCCATAGAACATTGCTATATGGTGGTATATTCATGTACCCTGCTGATAAGAAAAGCCCAAATGGAAAGCTAAGGGTTCTGTATGAAGTTTTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGTCAAGCTTTCACAGGAAAACAAAGGGCACTTGACTTGGTTCCTAAGAAAATACATGATCGATCGCCAATATTCCTTGGAAGCTACGATGAAATTGAGCATATAAAAGAGCTTTATGCAGAATCCAAAGAAAATGGTGCATGA

Protein sequence

>MsG0280006417.01.T01

MDHQADANRTDLMTITRFVLNEQSKYAESRGDFTILINHIVLGCKFVCSSVNKFFLLTGWIGKNPRTCWRHQCSTNTSKTCADTPISFKFDLPPPGEEQKKLDVISNEVFVKALISSGRTCLLVSEEVDDAIIVPPAQRGKYIVVFDPLDGSSNIDCGVSIGTIFGIYTVKDTTEVSVEDALQPGSSLVAAGYCMYGSSCTFVLSTGNGVNGFTLDPSLGEFILTHPNIKVHALYTKERKIYSVNEGNAKNWDEPTAKYVENCKFPQDSSPPKSLRYIGSMVADVHRTLLYGGIFMYPADKKSPNGKLRVLYEVFPMSYLMEQAGGQAFTGKQRALDLVPKKIHDRSPIFLGSYDEIEHIKELYAESKENGA*