AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007079.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007079.01.T01 MTR_2g020190 87.500 272 6 2 52 297 1 270 9.92e-174 481
MsG0280007079.01.T01 MTR_4g094742 57.667 300 84 2 41 297 35 334 6.99e-118 342
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007079.01.T01 AT2G39080 57.823 294 83 2 39 294 57 347 7.61e-113 330

Find 85 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGGCTTTAGAGAAAT+TGG 0.165423 2:+10352265 None:intergenic
ATCGTTGGTCCTGGTGTTCT+TGG 0.252463 2:-10352142 MsG0280007079.01.T01:CDS
CCTTATGATTGTAACGATAA+TGG 0.258705 2:-10350513 MsG0280007079.01.T01:CDS
TGGATTACCTTGGTGATCTT+AGG 0.305690 2:-10351659 MsG0280007079.01.T01:intron
TCTTCTCCTTCTCTTTCAAT+TGG 0.307326 2:-10352181 MsG0280007079.01.T01:CDS
GAAAATATTGTGCTCGAGTT+TGG 0.312631 2:-10350234 MsG0280007079.01.T01:CDS
CTTTAGAGAAATTGGGGAAT+TGG 0.315540 2:+10352273 None:intergenic
TCATGAAGAGTTGGTTCAAT+TGG 0.321265 2:-10351763 MsG0280007079.01.T01:CDS
GTATTAGTCCTGCTTTGAAT+TGG 0.338500 2:-10351740 MsG0280007079.01.T01:CDS
TTTAGAGAAATTGGGGAATT+GGG 0.340909 2:+10352274 None:intergenic
TCGGCTCCCACCCAACTTCT+TGG 0.350973 2:+10348653 None:intergenic
TGCTCCTCCTTATCAATCAT+TGG 0.356100 2:-10351679 MsG0280007079.01.T01:CDS
AAAGTTGAAATTTACTTTGA+AGG 0.365545 2:-10348461 MsG0280007079.01.T01:three_prime_UTR
GTGAGATATTGAAATTCAAA+TGG 0.366331 2:+10352212 None:intergenic
ATCTTCATCTTTCTCTTCCA+TGG 0.372647 2:-10352239 MsG0280007079.01.T01:CDS
GGGAAACTTATGGTCAGATT+TGG 0.376255 2:+10351716 None:intergenic
GAAGAGAAAGATGAAGATAA+AGG 0.391771 2:+10352244 None:intergenic
GTCGTTTGGTCGCTCATCAA+TGG 0.392509 2:-10352120 MsG0280007079.01.T01:CDS
TGTTTGTTATTGATGGCATT+AGG 0.402344 2:-10352385 None:intergenic
GTGATGGCTTTAGAGAAATT+GGG 0.407211 2:+10352266 None:intergenic
TCCTGGTGTTCTTGGTCGTT+TGG 0.407798 2:-10352134 MsG0280007079.01.T01:CDS
CACCAGGACCAACGATTAGA+AGG 0.408443 2:+10352149 None:intergenic
CTCCTCCCAATTGGCACGAC+TGG 0.408761 2:+10350285 None:intergenic
GATACTCCAGTCGTGCCAAT+TGG 0.419650 2:-10350291 MsG0280007079.01.T01:CDS
CAATGACATAGGGAAACTTA+TGG 0.425090 2:+10351706 None:intergenic
GTGGTGGAGTTGAGAAGAAA+TGG 0.432736 2:+10352296 None:intergenic
CATGAAGAGTTGGTTCAATT+GGG 0.441809 2:-10351762 MsG0280007079.01.T01:CDS
GTTCTCGGGCTCCTCCCAAT+TGG 0.450558 2:+10350276 None:intergenic
TCAGGCAGGCTGCAGAATGC+TGG 0.455175 2:-10350575 MsG0280007079.01.T01:intron
TGAGATATTGAAATTCAAAT+GGG 0.461645 2:+10352213 None:intergenic
TGGTGGAGTTGAGAAGAAAT+GGG 0.463518 2:+10352297 None:intergenic
TGTGCTCGAGTTTGGTGGTT+CGG 0.464774 2:-10350226 MsG0280007079.01.T01:intron
TTTAGAAGGACATCAGTTCT+CGG 0.472428 2:+10350261 None:intergenic
TTAGAAGGACATCAGTTCTC+GGG 0.474461 2:+10350262 None:intergenic
GTGATAATCATCCTTTGTCC+AGG 0.478529 2:-10349780 MsG0280007079.01.T01:intron
AAACGGTGTAAATGTGTTAG+TGG 0.480620 2:+10352325 None:intergenic
GCATGAAGAGAGTGTTGAAA+TGG 0.485200 2:+10352353 None:intergenic
TATCAATCATTGGATTACCT+TGG 0.501321 2:-10351669 MsG0280007079.01.T01:CDS
ATTGAAAGAGAAGGAGAAGA+AGG 0.501906 2:+10352184 None:intergenic
CAAAGATCTCACTCAAAAGT+TGG 0.502049 2:+10348592 None:intergenic
ATACTCCAGTCGTGCCAATT+GGG 0.502069 2:-10350290 MsG0280007079.01.T01:CDS
CCATTATCGTTACAATCATA+AGG 0.503939 2:+10350513 None:intergenic
GAAATTGGGGAATTGGGTGG+TGG 0.511531 2:+10352280 None:intergenic
AAAGATGAAGATAAAGGTGA+TGG 0.514258 2:+10352250 None:intergenic
AGAGAAATTGGGGAATTGGG+TGG 0.519135 2:+10352277 None:intergenic
AGGTAATCCAATGATTGATA+AGG 0.521831 2:+10351672 None:intergenic
TGATGGCTTTAGAGAAATTG+GGG 0.526292 2:+10352267 None:intergenic
TACTGATCATCATGAAGAGT+TGG 0.526882 2:-10351772 MsG0280007079.01.T01:CDS
AATATTGTGCTCGAGTTTGG+TGG 0.533294 2:-10350231 MsG0280007079.01.T01:CDS
CTTCAAAATTGCAACGGAGA+GGG 0.536306 2:+10349834 None:intergenic
CAGGCTGCAGAATGCTGGAA+TGG 0.537544 2:-10350570 MsG0280007079.01.T01:CDS
GACCTTCTAATCGTTGGTCC+TGG 0.539275 2:-10352151 MsG0280007079.01.T01:CDS
AGGAGCACATACAATGACAT+AGG 0.541031 2:+10351695 None:intergenic
ATGGATCTAGTCGACAAAAG+TGG 0.544166 2:-10348924 MsG0280007079.01.T01:CDS
AACTCGCCAAGAAGTTGGGT+GGG 0.553451 2:-10348659 MsG0280007079.01.T01:CDS
GCAGGAACTGATGATCCTCT+TGG 0.554847 2:-10348703 MsG0280007079.01.T01:intron
GAAATTCAAATGGGTAGCCA+TGG 0.559481 2:+10352222 None:intergenic
TTGTTTCTTCAAAATTGCAA+CGG 0.560832 2:+10349828 None:intergenic
ACCAAACGACCAAGAACACC+AGG 0.561950 2:+10352133 None:intergenic
GATTTGGTCCAATTCAAAGC+AGG 0.563850 2:+10351732 None:intergenic
GGTCGCTCATCAATGGCGGC+AGG 0.565178 2:-10352113 MsG0280007079.01.T01:intron
CAACATGACCTTCTAATCGT+TGG 0.577258 2:-10352157 MsG0280007079.01.T01:CDS
TAATCCAATGATTGATAAGG+AGG 0.577326 2:+10351675 None:intergenic
TGGATCTAGTCGACAAAAGT+GGG 0.582143 2:-10348923 MsG0280007079.01.T01:CDS
TCTATTGAATCAGGAACATG+AGG 0.585010 2:-10351823 MsG0280007079.01.T01:intron
TTGTTATTGATGGCATTAGG+AGG 0.586805 2:-10352382 None:intergenic
GCAGAATGCTGGAATGGAGA+AGG 0.593499 2:-10350564 MsG0280007079.01.T01:CDS
TGTTGTCCAATTGAAAGAGA+AGG 0.599252 2:+10352175 None:intergenic
AAACTCGCCAAGAAGTTGGG+TGG 0.604194 2:-10348660 MsG0280007079.01.T01:CDS
GGAGCACATACAATGACATA+GGG 0.607743 2:+10351696 None:intergenic
GTGAACAATGAACATTGTCA+AGG 0.609453 2:-10348439 MsG0280007079.01.T01:three_prime_UTR
GGTGGAGTTGAGAAGAAATG+GGG 0.613805 2:+10352298 None:intergenic
TGAGCAAAGCTAGAGTACTT+CGG 0.623491 2:+10348634 None:intergenic
CTCCAGTCGTGCCAATTGGG+AGG 0.623505 2:-10350287 MsG0280007079.01.T01:CDS
TCTTCAAAATTGCAACGGAG+AGG 0.627129 2:+10349833 None:intergenic
TTGTTCAATCTCTTACCAAG+AGG 0.630106 2:+10348688 None:intergenic
CGATAATGGTTTATGCGATG+AGG 0.634674 2:-10350499 MsG0280007079.01.T01:intron
AAATCACCTAACCTGGACAA+AGG 0.653574 2:+10349769 None:intergenic
GGTGTAAATGTGTTAGTGGT+TGG 0.653759 2:+10352329 None:intergenic
GTTTGGTCGCTCATCAATGG+CGG 0.654822 2:-10352117 MsG0280007079.01.T01:CDS
GTGGAGTTGAGAAGAAATGG+GGG 0.662811 2:+10352299 None:intergenic
TCAAGGTATAATACTACACA+AGG 0.674883 2:-10348422 MsG0280007079.01.T01:three_prime_UTR
AAGTTGGTCATAGAGTCTCA+AGG 0.697220 2:+10348608 None:intergenic
CTATTGAATCAGGAACATGA+GGG 0.710683 2:-10351822 MsG0280007079.01.T01:intron
TTGCTCACCTAAGATCACCA+AGG 0.722733 2:+10351652 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAACTTAAAAACTTA+TGG + Chr2:10350991-10351010 None:intergenic 10.0%
!! ATTAAAACTTAAAAACTTAT+GGG + Chr2:10350990-10351009 None:intergenic 10.0%
!!! ATATTTTCTAATATATTCAT+AGG - Chr2:10348758-10348777 MsG0280007079.01.T01:intron 10.0%
!!! TGATAAATATTTGATATTTT+AGG + Chr2:10349467-10349486 None:intergenic 10.0%
!!! TTTTAAGTTTTAATTTATGA+TGG - Chr2:10350996-10351015 MsG0280007079.01.T01:intron 10.0%
!! ATTTAAAAAAGCAAATAGAA+AGG + Chr2:10351743-10351762 None:intergenic 15.0%
!! TATATATTAAAATACAGACT+TGG + Chr2:10349369-10349388 None:intergenic 15.0%
!!! AATATTTTCTTATCTACTTA+TGG - Chr2:10350803-10350822 MsG0280007079.01.T01:intron 15.0%
!!! TCTTTTTTCATATGTATTAT+TGG - Chr2:10349750-10349769 MsG0280007079.01.T01:intron 15.0%
!!! TTGTTTAAATTTGTTTCAAT+TGG - Chr2:10350298-10350317 MsG0280007079.01.T01:intron 15.0%
!! AAAGTTGAAATTTACTTTGA+AGG - Chr2:10352272-10352291 MsG0280007079.01.T01:CDS 20.0%
!! AACATGATATTATATTCTCA+TGG + Chr2:10349428-10349447 None:intergenic 20.0%
!! AGTAAGGAATAAATTTCAAA+AGG + Chr2:10351041-10351060 None:intergenic 20.0%
!! ATGTTTCATTAAATGTTGTT+TGG + Chr2:10351912-10351931 None:intergenic 20.0%
!! GATGATCAATTAAGTATAAA+GGG + Chr2:10349247-10349266 None:intergenic 20.0%
!! GTAAGGAATAAATTTCAAAA+GGG + Chr2:10351040-10351059 None:intergenic 20.0%
!! TGAGATATTGAAATTCAAAT+GGG + Chr2:10348523-10348542 None:intergenic 20.0%
!! TGATGATCAATTAAGTATAA+AGG + Chr2:10349248-10349267 None:intergenic 20.0%
!! TTAAAATATCGTATTTGACA+TGG + Chr2:10351157-10351176 None:intergenic 20.0%
!! TTAACAAAAATACAGATGTT+TGG - Chr2:10351173-10351192 MsG0280007079.01.T01:intron 20.0%
!!! ATCATTTTCAATTTAACTGT+TGG - Chr2:10351611-10351630 MsG0280007079.01.T01:intron 20.0%
!!! ATTTTATTTACAATGTCTCA+TGG + Chr2:10352198-10352217 None:intergenic 20.0%
!!! CATTCTTTGATGATAATATT+TGG - Chr2:10349847-10349866 MsG0280007079.01.T01:CDS 20.0%
!!! TATTTCTGTTATGTTTATAG+TGG - Chr2:10350614-10350633 MsG0280007079.01.T01:intron 20.0%
!!! TTAATCCTTTAATTTGTAGT+TGG - Chr2:10349124-10349143 MsG0280007079.01.T01:intron 20.0%
!!! TTAATTTTGACTCTAAACAT+CGG - Chr2:10351215-10351234 MsG0280007079.01.T01:intron 20.0%
!!! TTTTAATACAAAGAAGGTAA+AGG - Chr2:10350651-10350670 MsG0280007079.01.T01:intron 20.0%
!!! TTTTAATTTTCCTGAAATCA+TGG - Chr2:10348810-10348829 MsG0280007079.01.T01:intron 20.0%
!!! TTTTTTCTTTTCTTTTCTTG+AGG - Chr2:10351956-10351975 MsG0280007079.01.T01:intron 20.0%
! ACAAATATTTGAAGAAAGAG+AGG + Chr2:10350282-10350301 None:intergenic 25.0%
! AGATTTACTTACTTCTATTC+AGG - Chr2:10350420-10350439 MsG0280007079.01.T01:intron 25.0%
! ATCATGTAAAACCTTAAGAT+TGG + Chr2:10349912-10349931 None:intergenic 25.0%
! CAAATATTTGAAGAAAGAGA+GGG + Chr2:10350281-10350300 None:intergenic 25.0%
! CTTATGATTGACTAATACAA+TGG + Chr2:10349628-10349647 None:intergenic 25.0%
! CTTCTTTGTATTAAAAGTCA+AGG + Chr2:10350647-10350666 None:intergenic 25.0%
! GTGAGATATTGAAATTCAAA+TGG + Chr2:10348524-10348543 None:intergenic 25.0%
! TGATAAAACTGAATATGATG+AGG + Chr2:10350355-10350374 None:intergenic 25.0%
! TTATTCTAAACTTCTGTGTT+TGG - Chr2:10350123-10350142 MsG0280007079.01.T01:intron 25.0%
!! CTTGACTTTTAATACAAAGA+AGG - Chr2:10350645-10350664 MsG0280007079.01.T01:intron 25.0%
!! GCAAATTTGTTTGGTTAAAT+TGG - Chr2:10351500-10351519 MsG0280007079.01.T01:intron 25.0%
!! TATTTTGCCTTTGAACATTT+TGG - Chr2:10351773-10351792 MsG0280007079.01.T01:CDS 25.0%
!! TGTTTCAATTGGTTAATTTG+TGG - Chr2:10350309-10350328 MsG0280007079.01.T01:intron 25.0%
!! TTGTTTCTTCAAAATTGCAA+CGG + Chr2:10350908-10350927 None:intergenic 25.0%
!!! ATTCAGTTTTATCACAATGT+AGG - Chr2:10350361-10350380 MsG0280007079.01.T01:intron 25.0%
!!! ATTTTGAAGAAACAATTTCG+TGG - Chr2:10350913-10350932 MsG0280007079.01.T01:intron 25.0%
!!! CAATATTTTCTGCTTTTAGA+AGG + Chr2:10350489-10350508 None:intergenic 25.0%
!!! TCCTAGATTTAGTTTTTACA+GGG - Chr2:10349550-10349569 MsG0280007079.01.T01:intron 25.0%
!!! TTCCTAGATTTAGTTTTTAC+AGG - Chr2:10349549-10349568 MsG0280007079.01.T01:intron 25.0%
AAAAAGTTCGAGAAATTCAC+AGG - Chr2:10351842-10351861 MsG0280007079.01.T01:intron 30.0%
AAAGATGAAGATAAAGGTGA+TGG + Chr2:10348486-10348505 None:intergenic 30.0%
AAATCATGGAATTGGAATGT+TGG - Chr2:10348824-10348843 MsG0280007079.01.T01:intron 30.0%
AATCATGGAATTGGAATGTT+GGG - Chr2:10348825-10348844 MsG0280007079.01.T01:intron 30.0%
ACACACTTACTATTTAGAGA+AGG - Chr2:10350677-10350696 MsG0280007079.01.T01:intron 30.0%
ACACTTACTATTTAGAGAAG+GGG - Chr2:10350679-10350698 MsG0280007079.01.T01:intron 30.0%
ACATATATGTATCTTAGACG+CGG - Chr2:10349680-10349699 MsG0280007079.01.T01:intron 30.0%
ACTGAATCTCATACATTATG+AGG - Chr2:10350728-10350747 MsG0280007079.01.T01:intron 30.0%
AGATATTTGAGTGTGTGTTT+GGG + Chr2:10351405-10351424 None:intergenic 30.0%
AGGTAATCCAATGATTGATA+AGG + Chr2:10349064-10349083 None:intergenic 30.0%
ATAACCAACCACAAGATTAA+TGG + Chr2:10350597-10350616 None:intergenic 30.0%
ATGTAAAACCTTAAGATTGG+AGG + Chr2:10349909-10349928 None:intergenic 30.0%
CACACTTACTATTTAGAGAA+GGG - Chr2:10350678-10350697 MsG0280007079.01.T01:intron 30.0%
CCATTATCGTTACAATCATA+AGG + Chr2:10350223-10350242 None:intergenic 30.0%
CCTTATGATTGTAACGATAA+TGG - Chr2:10350220-10350239 MsG0280007079.01.T01:intron 30.0%
CTAAATCTAGGAAGACATTA+CGG + Chr2:10349542-10349561 None:intergenic 30.0%
GAAGAGAAAGATGAAGATAA+AGG + Chr2:10348492-10348511 None:intergenic 30.0%
TAAATCTAGGAAGACATTAC+GGG + Chr2:10349541-10349560 None:intergenic 30.0%
TAATCCAATGATTGATAAGG+AGG + Chr2:10349061-10349080 None:intergenic 30.0%
TAATGATTCCTCCAATCTTA+AGG - Chr2:10349898-10349917 MsG0280007079.01.T01:intron 30.0%
TATAAAGGGTTGTCAAATAG+CGG + Chr2:10349233-10349252 None:intergenic 30.0%
TATCAATCATTGGATTACCT+TGG - Chr2:10349064-10349083 MsG0280007079.01.T01:intron 30.0%
TCAAAGTTCCATTAATCTTG+TGG - Chr2:10350586-10350605 MsG0280007079.01.T01:intron 30.0%
TCAAGGTATAATACTACACA+AGG - Chr2:10352311-10352330 MsG0280007079.01.T01:CDS 30.0%
TCACATAAGTCACAAAAGAA+AGG + Chr2:10349707-10349726 None:intergenic 30.0%
TCCTACCAACTACAAATTAA+AGG + Chr2:10349132-10349151 None:intergenic 30.0%
TGACATGGACAAAATTCATA+TGG + Chr2:10351142-10351161 None:intergenic 30.0%
TTTAGAGAAATTGGGGAATT+GGG + Chr2:10348462-10348481 None:intergenic 30.0%
! ACATGTGTTTCTATTGAATC+AGG - Chr2:10348901-10348920 MsG0280007079.01.T01:CDS 30.0%
! TAAAGAGTAGCTTTTGTGAT+AGG - Chr2:10351253-10351272 MsG0280007079.01.T01:intron 30.0%
! TTTATGATGGAGACCATAAT+TGG - Chr2:10351009-10351028 MsG0280007079.01.T01:intron 30.0%
! TTTTCCTGAAATCATGGAAT+TGG - Chr2:10348816-10348835 MsG0280007079.01.T01:intron 30.0%
!! AACTTTTGAGTGAGATCTTT+GGG - Chr2:10352143-10352162 MsG0280007079.01.T01:CDS 30.0%
!! ATTGGTTAATTTGTGGCATT+AGG - Chr2:10350316-10350335 MsG0280007079.01.T01:intron 30.0%
!! GACATGATTTTGAAAGGAAT+TGG + Chr2:10351375-10351394 None:intergenic 30.0%
!! TCATTTTAGCGTATCTGTAT+GGG - Chr2:10349874-10349893 MsG0280007079.01.T01:intron 30.0%
!! TCCTTTAATTTGTAGTTGGT+AGG - Chr2:10349128-10349147 MsG0280007079.01.T01:intron 30.0%
!! TTAATGGAACTTTGAAATCC+TGG + Chr2:10350581-10350600 None:intergenic 30.0%
!! TTCATTTTAGCGTATCTGTA+TGG - Chr2:10349873-10349892 MsG0280007079.01.T01:intron 30.0%
!!! AGTTGTTGACACTTATTTTG+AGG - Chr2:10348726-10348745 MsG0280007079.01.T01:intron 30.0%
!!! CCTAGATTTAGTTTTTACAG+GGG - Chr2:10349551-10349570 MsG0280007079.01.T01:intron 30.0%
!!! TACATGAGTTGGTTTTTTGA+GGG + Chr2:10349514-10349533 None:intergenic 30.0%
AAACGGTGTAAATGTGTTAG+TGG + Chr2:10348411-10348430 None:intergenic 35.0%
AAAGAAAGACACAACTCAAG+AGG + Chr2:10351719-10351738 None:intergenic 35.0%
AACGCAGCATTATACTATTG+TGG + Chr2:10349310-10349329 None:intergenic 35.0%
AGTTCCATTAATCTTGTGGT+TGG - Chr2:10350590-10350609 MsG0280007079.01.T01:intron 35.0%
ATCTTCATCTTTCTCTTCCA+TGG - Chr2:10348494-10348513 MsG0280007079.01.T01:three_prime_UTR 35.0%
ATGCTTGCTCAAAATTCTCT+TGG - Chr2:10349809-10349828 MsG0280007079.01.T01:CDS 35.0%
ATTGAAAGAGAAGGAGAAGA+AGG + Chr2:10348552-10348571 None:intergenic 35.0%
CAAAAGGGAAGAACCAATTA+TGG + Chr2:10351025-10351044 None:intergenic 35.0%
CAAAGATCTCACTCAAAAGT+TGG + Chr2:10352144-10352163 None:intergenic 35.0%
CAATGACATAGGGAAACTTA+TGG + Chr2:10349030-10349049 None:intergenic 35.0%
CATTCCAATTCCATGATTTC+AGG + Chr2:10348823-10348842 None:intergenic 35.0%
CCCCTGTAAAAACTAAATCT+AGG + Chr2:10349554-10349573 None:intergenic 35.0%
CCTGCGAACAAAAATTACAA+AGG + Chr2:10352015-10352034 None:intergenic 35.0%
CTAAATGCTGTATTACTGCA+AGG + Chr2:10350065-10350084 None:intergenic 35.0%
CTATTGAATCAGGAACATGA+GGG - Chr2:10348911-10348930 MsG0280007079.01.T01:CDS 35.0%
CTTGCAGTAATACAGCATTT+AGG - Chr2:10350063-10350082 MsG0280007079.01.T01:intron 35.0%
GAAAATATTGTGCTCGAGTT+TGG - Chr2:10350499-10350518 MsG0280007079.01.T01:intron 35.0%
GAGATATTTGAGTGTGTGTT+TGG + Chr2:10351406-10351425 None:intergenic 35.0%
GATCAACTTACTTGAAGAGT+TGG - Chr2:10351095-10351114 MsG0280007079.01.T01:intron 35.0%
GATGTTTGGTTATAAGTGTC+AGG - Chr2:10351187-10351206 MsG0280007079.01.T01:intron 35.0%
GGAATGATGCTTTCACAATT+AGG + Chr2:10351994-10352013 None:intergenic 35.0%
GTGAACAATGAACATTGTCA+AGG - Chr2:10352294-10352313 MsG0280007079.01.T01:CDS 35.0%
GTTGAACATTTCGTCTAATG+TGG - Chr2:10350852-10350871 MsG0280007079.01.T01:intron 35.0%
TAACCGTGATATGAGAATTC+AGG + Chr2:10350030-10350049 None:intergenic 35.0%
TACTGATCATCATGAAGAGT+TGG - Chr2:10348961-10348980 MsG0280007079.01.T01:intron 35.0%
TCATCACATGATTCAACAGT+TGG + Chr2:10351472-10351491 None:intergenic 35.0%
TCTATTGAATCAGGAACATG+AGG - Chr2:10348910-10348929 MsG0280007079.01.T01:CDS 35.0%
TCTTCTCCTTCTCTTTCAAT+TGG - Chr2:10348552-10348571 MsG0280007079.01.T01:three_prime_UTR 35.0%
TGCTTGCTCAAAATTCTCTT+GGG - Chr2:10349810-10349829 MsG0280007079.01.T01:CDS 35.0%
TGTTGTCCAATTGAAAGAGA+AGG + Chr2:10348561-10348580 None:intergenic 35.0%
TTGTTCAATCTCTTACCAAG+AGG + Chr2:10352048-10352067 None:intergenic 35.0%
TTTAGAAGGACATCAGTTCT+CGG + Chr2:10350475-10350494 None:intergenic 35.0%
TTTCAAAACCACAATTTGCC+AGG - Chr2:10350560-10350579 MsG0280007079.01.T01:CDS 35.0%
! AACTTTTGCTTCATGTAGAG+TGG + Chr2:10352258-10352277 None:intergenic 35.0%
! ATCATGCAGGCAAATTTGTT+TGG - Chr2:10351491-10351510 MsG0280007079.01.T01:intron 35.0%
! ATTTCGTGGACGAATTTTCT+TGG - Chr2:10350927-10350946 MsG0280007079.01.T01:intron 35.0%
! CATGAAGAGTTGGTTCAATT+GGG - Chr2:10348971-10348990 MsG0280007079.01.T01:intron 35.0%
! CATTGTCAATTGCTGATTGT+AGG - Chr2:10349163-10349182 MsG0280007079.01.T01:intron 35.0%
! CCTTTGTAATTTTTGTTCGC+AGG - Chr2:10352012-10352031 MsG0280007079.01.T01:intron 35.0%
! CTTTAGAGAAATTGGGGAAT+TGG + Chr2:10348463-10348482 None:intergenic 35.0%
! GAGCAAGACATGATTTTGAA+AGG + Chr2:10351381-10351400 None:intergenic 35.0%
! GTATTAGTCCTGCTTTGAAT+TGG - Chr2:10348993-10349012 MsG0280007079.01.T01:intron 35.0%
! TAATGTGGCTTTTCTAAACC+AGG - Chr2:10350867-10350886 MsG0280007079.01.T01:intron 35.0%
! TCATGAAGAGTTGGTTCAAT+TGG - Chr2:10348970-10348989 MsG0280007079.01.T01:intron 35.0%
! TTTCGTGGACGAATTTTCTT+GGG - Chr2:10350928-10350947 MsG0280007079.01.T01:intron 35.0%
! TTTGAAATCCTGGCAAATTG+TGG + Chr2:10350571-10350590 None:intergenic 35.0%
!! ACTTTTGAGTGAGATCTTTG+GGG - Chr2:10352144-10352163 MsG0280007079.01.T01:CDS 35.0%
!! CAACTTTTGAGTGAGATCTT+TGG - Chr2:10352142-10352161 MsG0280007079.01.T01:CDS 35.0%
!! CAAGTAAGTTGATCTTCACT+CGG + Chr2:10351089-10351108 None:intergenic 35.0%
!! CAGCATTTAGGATTTTGCTT+AGG - Chr2:10350075-10350094 MsG0280007079.01.T01:intron 35.0%
!! CATTTTAGCGTATCTGTATG+GGG - Chr2:10349875-10349894 MsG0280007079.01.T01:intron 35.0%
!! GTGATGGCTTTAGAGAAATT+GGG + Chr2:10348470-10348489 None:intergenic 35.0%
!! TGATGGCTTTAGAGAAATTG+GGG + Chr2:10348469-10348488 None:intergenic 35.0%
!!! GGCAAATTGTGGTTTTGAAA+AGG + Chr2:10350560-10350579 None:intergenic 35.0%
!!! GTACATGAGTTGGTTTTTTG+AGG + Chr2:10349515-10349534 None:intergenic 35.0%
!!! TTTAGTTTTTACAGGGGTGT+TGG - Chr2:10349557-10349576 MsG0280007079.01.T01:intron 35.0%
AAATCACCTAACCTGGACAA+AGG + Chr2:10350967-10350986 None:intergenic 40.0%
AATATTGTGCTCGAGTTTGG+TGG - Chr2:10350502-10350521 MsG0280007079.01.T01:CDS 40.0%
AATCATCCTTTGTCCAGGTT+AGG - Chr2:10350958-10350977 MsG0280007079.01.T01:intron 40.0%
AGAAGAAATGGGGGTTGAAA+CGG + Chr2:10348428-10348447 None:intergenic 40.0%
AGGAGGGTAATCTAACAGAA+CGG + Chr2:10350010-10350029 None:intergenic 40.0%
ATAATGCTGCGTTTGTGAGT+TGG - Chr2:10349317-10349336 MsG0280007079.01.T01:intron 40.0%
ATGAGATTCAGTACGTGATC+AGG + Chr2:10350720-10350739 None:intergenic 40.0%
ATGGATCTAGTCGACAAAAG+TGG - Chr2:10351809-10351828 MsG0280007079.01.T01:CDS 40.0%
CAAAAACTCGCCAAGAAGTT+GGG - Chr2:10352070-10352089 MsG0280007079.01.T01:intron 40.0%
CAACATGACCTTCTAATCGT+TGG - Chr2:10348576-10348595 MsG0280007079.01.T01:three_prime_UTR 40.0%
CCTCCTGAATTCTCATATCA+CGG - Chr2:10350024-10350043 MsG0280007079.01.T01:intron 40.0%
CGTGATATGAGAATTCAGGA+GGG + Chr2:10350026-10350045 None:intergenic 40.0%
CTTCAAAATTGCAACGGAGA+GGG + Chr2:10350902-10350921 None:intergenic 40.0%
GAAATTCAAATGGGTAGCCA+TGG + Chr2:10348514-10348533 None:intergenic 40.0%
GAATCATGTGATGATCATGC+AGG - Chr2:10351478-10351497 MsG0280007079.01.T01:intron 40.0%
GGAGCACATACAATGACATA+GGG + Chr2:10349040-10349059 None:intergenic 40.0%
GGGAAACTTATGGTCAGATT+TGG + Chr2:10349020-10349039 None:intergenic 40.0%
GGTGTAAATGTGTTAGTGGT+TGG + Chr2:10348407-10348426 None:intergenic 40.0%
GTATGGTGATAGCTAGAGTA+AGG + Chr2:10351057-10351076 None:intergenic 40.0%
GTGATAATCATCCTTTGTCC+AGG - Chr2:10350953-10350972 MsG0280007079.01.T01:intron 40.0%
GTGGCATTGTTGTCAAATAG+TGG + Chr2:10349291-10349310 None:intergenic 40.0%
TAATGCTGCGTTTGTGAGTT+GGG - Chr2:10349318-10349337 MsG0280007079.01.T01:intron 40.0%
TATCACACCATCAGACATCA+GGG + Chr2:10350768-10350787 None:intergenic 40.0%
TCAAAAACTCGCCAAGAAGT+TGG - Chr2:10352069-10352088 MsG0280007079.01.T01:intron 40.0%
TCTTCAAAATTGCAACGGAG+AGG + Chr2:10350903-10350922 None:intergenic 40.0%
TGATCTTAGGTGAGCAATCT+TGG - Chr2:10349087-10349106 MsG0280007079.01.T01:intron 40.0%
TGCTCCTCCTTATCAATCAT+TGG - Chr2:10349054-10349073 MsG0280007079.01.T01:intron 40.0%
TGGATCTAGTCGACAAAAGT+GGG - Chr2:10351810-10351829 MsG0280007079.01.T01:CDS 40.0%
TGGTGGAGTTGAGAAGAAAT+GGG + Chr2:10348439-10348458 None:intergenic 40.0%
TTAGAAGGACATCAGTTCTC+GGG + Chr2:10350474-10350493 None:intergenic 40.0%
TTATCACACCATCAGACATC+AGG + Chr2:10350769-10350788 None:intergenic 40.0%
TTATGGGAAATCACCTAACC+TGG + Chr2:10350974-10350993 None:intergenic 40.0%
TTGCCTGCCAAAATGTTCAA+AGG + Chr2:10351783-10351802 None:intergenic 40.0%
! AAGTTGGTCATAGAGTCTCA+AGG + Chr2:10352128-10352147 None:intergenic 40.0%
! AGGAGCACATACAATGACAT+AGG + Chr2:10349041-10349060 None:intergenic 40.0%
! CATGAGGGTAGTCAAGTTTT+TGG - Chr2:10348926-10348945 MsG0280007079.01.T01:CDS 40.0%
! CGATAATGGTTTATGCGATG+AGG - Chr2:10350234-10350253 MsG0280007079.01.T01:CDS 40.0%
! GATTTGGTCCAATTCAAAGC+AGG + Chr2:10349004-10349023 None:intergenic 40.0%
! TGAGCAAAGCTAGAGTACTT+CGG + Chr2:10352102-10352121 None:intergenic 40.0%
! TGGATTACCTTGGTGATCTT+AGG - Chr2:10349074-10349093 MsG0280007079.01.T01:intron 40.0%
! TTGGATGGGAAGATTTTCGA+GGG - Chr2:10349343-10349362 MsG0280007079.01.T01:intron 40.0%
! TTTGGATGGGAAGATTTTCG+AGG - Chr2:10349342-10349361 MsG0280007079.01.T01:intron 40.0%
! TTTTGGCAGGCAAGAATTGA+TGG - Chr2:10351790-10351809 MsG0280007079.01.T01:CDS 40.0%
!! GCATGAAGAGAGTGTTGAAA+TGG + Chr2:10348383-10348402 None:intergenic 40.0%
!! GGTGATGGCTTTAGAGAAAT+TGG + Chr2:10348471-10348490 None:intergenic 40.0%
!! TTGCCTTTGAACATTTTGGC+AGG - Chr2:10351777-10351796 MsG0280007079.01.T01:CDS 40.0%
!!! TTGTGAGTTGGGTTTTGGAT+GGG - Chr2:10349329-10349348 MsG0280007079.01.T01:intron 40.0%
!!! TTTGTGAGTTGGGTTTTGGA+TGG - Chr2:10349328-10349347 MsG0280007079.01.T01:intron 40.0%
AAGACACAACTCAAGAGGTG+AGG + Chr2:10351714-10351733 None:intergenic 45.0%
AGAGAAATTGGGGAATTGGG+TGG + Chr2:10348459-10348478 None:intergenic 45.0%
ATACTCCAGTCGTGCCAATT+GGG - Chr2:10350443-10350462 MsG0280007079.01.T01:intron 45.0%
CCGTGATATGAGAATTCAGG+AGG + Chr2:10350027-10350046 None:intergenic 45.0%
GGTGGAGTTGAGAAGAAATG+GGG + Chr2:10348438-10348457 None:intergenic 45.0%
GTGGAGTTGAGAAGAAATGG+GGG + Chr2:10348437-10348456 None:intergenic 45.0%
TGTTGGTGCAGCTGTTGTAA+GGG - Chr2:10349574-10349593 MsG0280007079.01.T01:intron 45.0%
TTACGGGTGTGTACATGAGT+TGG + Chr2:10349525-10349544 None:intergenic 45.0%
TTGATTGCCCTGATGTCTGA+TGG - Chr2:10350758-10350777 MsG0280007079.01.T01:intron 45.0%
TTGCTCACCTAAGATCACCA+AGG + Chr2:10349084-10349103 None:intergenic 45.0%
! GTGGTGGAGTTGAGAAGAAA+TGG + Chr2:10348440-10348459 None:intergenic 45.0%
! GTTTGGAGTGTCAACCATTC+AGG - Chr2:10350140-10350159 MsG0280007079.01.T01:intron 45.0%
! TGGTCGTGTAAAGCTGACTT+TGG + Chr2:10351355-10351374 None:intergenic 45.0%
!! ACTTGAAGAGTTGGCCTTCA+CGG - Chr2:10351104-10351123 MsG0280007079.01.T01:intron 45.0%
!! TGCGTTTGTGAGTTGGGTTT+TGG - Chr2:10349324-10349343 MsG0280007079.01.T01:intron 45.0%
AAACTCGCCAAGAAGTTGGG+TGG - Chr2:10352073-10352092 MsG0280007079.01.T01:intron 50.0%
AACTCGCCAAGAAGTTGGGT+GGG - Chr2:10352074-10352093 MsG0280007079.01.T01:intron 50.0%
ACCAAACGACCAAGAACACC+AGG + Chr2:10348603-10348622 None:intergenic 50.0%
ATCGTTGGTCCTGGTGTTCT+TGG - Chr2:10348591-10348610 MsG0280007079.01.T01:three_prime_UTR 50.0%
CACCAGGACCAACGATTAGA+AGG + Chr2:10348587-10348606 None:intergenic 50.0%
GAAATTGGGGAATTGGGTGG+TGG + Chr2:10348456-10348475 None:intergenic 50.0%
GACCTTCTAATCGTTGGTCC+TGG - Chr2:10348582-10348601 MsG0280007079.01.T01:three_prime_UTR 50.0%
GATACTCCAGTCGTGCCAAT+TGG - Chr2:10350442-10350461 MsG0280007079.01.T01:intron 50.0%
GCAGAATGCTGGAATGGAGA+AGG - Chr2:10350169-10350188 MsG0280007079.01.T01:intron 50.0%
GCAGGAACTGATGATCCTCT+TGG - Chr2:10352030-10352049 MsG0280007079.01.T01:intron 50.0%
GTCGTTTGGTCGCTCATCAA+TGG - Chr2:10348613-10348632 MsG0280007079.01.T01:exon 50.0%
GTTTGGTCGCTCATCAATGG+CGG - Chr2:10348616-10348635 MsG0280007079.01.T01:CDS 50.0%
TCACTCGGCGTATGTACGTA+TGG + Chr2:10351074-10351093 None:intergenic 50.0%
TCCTGGTGTTCTTGGTCGTT+TGG - Chr2:10348599-10348618 MsG0280007079.01.T01:exon 50.0%
! GGTTCGGTTGTTAGACTGTC+TGG - Chr2:10350523-10350542 MsG0280007079.01.T01:CDS 50.0%
! GTGTTGGTGCAGCTGTTGTA+AGG - Chr2:10349573-10349592 MsG0280007079.01.T01:intron 50.0%
! TGTGCTCGAGTTTGGTGGTT+CGG - Chr2:10350507-10350526 MsG0280007079.01.T01:CDS 50.0%
CAGGCTGCAGAATGCTGGAA+TGG - Chr2:10350163-10350182 MsG0280007079.01.T01:intron 55.0%
CATTCTGCAGCCTGCCTGAA+TGG + Chr2:10350157-10350176 None:intergenic 55.0%
! GGAGTGTCAACCATTCAGGC+AGG - Chr2:10350144-10350163 MsG0280007079.01.T01:intron 55.0%
CTCCAGTCGTGCCAATTGGG+AGG - Chr2:10350446-10350465 MsG0280007079.01.T01:intron 60.0%
CTCCTCCCAATTGGCACGAC+TGG + Chr2:10350451-10350470 None:intergenic 60.0%
GTTCTCGGGCTCCTCCCAAT+TGG + Chr2:10350460-10350479 None:intergenic 60.0%
TCAGGCAGGCTGCAGAATGC+TGG - Chr2:10350158-10350177 MsG0280007079.01.T01:intron 60.0%
TCGGCTCCCACCCAACTTCT+TGG + Chr2:10352083-10352102 None:intergenic 60.0%
!! AGTTGGCCTTCACGGCGTGA+CGG - Chr2:10351112-10351131 MsG0280007079.01.T01:intron 60.0%
CGGAGAGGGAAGCTGCATCC+TGG + Chr2:10350888-10350907 None:intergenic 65.0%
GGTCGCTCATCAATGGCGGC+AGG - Chr2:10348620-10348639 MsG0280007079.01.T01:CDS 65.0%
!! GTTGGCCTTCACGGCGTGAC+GGG - Chr2:10351113-10351132 MsG0280007079.01.T01:intron 65.0%
GGTCTCCCGTCACGCCGTGA+AGG + Chr2:10351121-10351140 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 10348360 10352395 10348360 ID=MsG0280007079.01;Name=MsG0280007079.01
Chr2 mRNA 10348360 10352395 10348360 ID=MsG0280007079.01.T01;Parent=MsG0280007079.01;Name=MsG0280007079.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.83|0.71|1|1|1|7|255|297
Chr2 exon 10348360 10348721 10348360 ID=MsG0280007079.01.T01:exon:2430;Parent=MsG0280007079.01.T01
Chr2 exon 10348892 10348956 10348892 ID=MsG0280007079.01.T01:exon:2429;Parent=MsG0280007079.01.T01
Chr2 exon 10349781 10349866 10349781 ID=MsG0280007079.01.T01:exon:2428;Parent=MsG0280007079.01.T01
Chr2 exon 10350227 10350313 10350227 ID=MsG0280007079.01.T01:exon:2427;Parent=MsG0280007079.01.T01
Chr2 exon 10350500 10350593 10350500 ID=MsG0280007079.01.T01:exon:2426;Parent=MsG0280007079.01.T01
Chr2 exon 10351660 10351832 10351660 ID=MsG0280007079.01.T01:exon:2425;Parent=MsG0280007079.01.T01
Chr2 exon 10352114 10352395 10352114 ID=MsG0280007079.01.T01:exon:2424;Parent=MsG0280007079.01.T01
Chr2 CDS 10352114 10352395 10352114 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 CDS 10351660 10351832 10351660 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 CDS 10350500 10350593 10350500 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 CDS 10350227 10350313 10350227 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 CDS 10349781 10349866 10349781 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 CDS 10348892 10348956 10348892 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 CDS 10348615 10348721 10348615 ID=MsG0280007079.01.T01:cds;Parent=MsG0280007079.01.T01
Chr2 three_prime_UTR 10348360 10348614 10348360 ID=MsG0280007079.01.T01:three_prime_utr;Parent=MsG0280007079.01.T01
Gene Sequence

>MsG0280007079.01.T01

ATGGCATTAGGAGGAATTATCCATTTCAACACTCTCTTCATGCACCAACCACTAACACATTTACACCGTTTCAACCCCCATTTCTTCTCAACTCCACCACCCAATTCCCCAATTTCTCTAAAGCCATCACCTTTATCTTCATCTTTCTCTTCCATGGCTACCCATTTGAATTTCAATATCTCACAATTGCCTTCTTCTCCTTCTCTTTCAATTGGACAACATGACCTTCTAATCGTTGGTCCTGGTGTTCTTGGTCGTTTGGTCGCTCATCAATGGCGGCAGGAACATGAGGGTAGTCAAGTTTTTGGACAGACAATAACTACTGATCATCATGAAGAGTTGGTTCAATTGGGTATTAGTCCTGCTTTGAATTGGACCAAATCTGACCATAAGTTTCCCTATGTCATTGTATGTGCTCCTCCTTATCAATCATTGGATTACCTTGGTGATCTTAGGCAGGCTGCAGAATGCTGGAATGGAGAAGGTTCTTTTCTGTATACATCAAGTTCTGCTCCTTATGATTGTAACGATAATGGTTTATGCGATGAGGATACTCCAGTCGTGCCAATTGGGAGGAGCCCGAGAACTGATGTCCTTCTAAAAGCAGAAAATATTGTGCTCGAGTTTGGTGGTTCGGATGCAGCTTCCCTCTCCGTTGCAATTTTGAAGAAACAATTTCGTGGACGAATTTTCTTGGGTTGTGATAATCATCCTTTGTCCAGGCAAGAATTGATGGATCTAGTCGACAAAAGTGGGAAGTTCAGTAAAAAGTTCGAGAAATTCACAGGAACTGATGATCCTCTTGGTAAGAGATTGAACAACTCAAAAACTCGCCAAGAAGTTGGGTGGGAGCCGAAGTACTCTAGCTTTGCTCATTTCCTTGAGACTCTATGA

Protein sequence

>MsG0280007079.01.T01

MALGGIIHFNTLFMHQPLTHLHRFNPHFFSTPPPNSPISLKPSPLSSSFSSMATHLNFNISQLPSSPSLSIGQHDLLIVGPGVLGRLVAHQWRQEHEGSQVFGQTITTDHHEELVQLGISPALNWTKSDHKFPYVIVCAPPYQSLDYLGDLRQAAECWNGEGSFLYTSSSAPYDCNDNGLCDEDTPVVPIGRSPRTDVLLKAENIVLEFGGSDAASLSVAILKKQFRGRIFLGCDNHPLSRQELMDLVDKSGKFSKKFEKFTGTDDPLGKRLNNSKTRQEVGWEPKYSSFAHFLETL*