AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018666.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018666.01.T01 MTR_4g016730 81.912 387 42 5 1 370 1 376 0.0 575
MsG0480018666.01.T01 MTR_7g068340 68.031 391 96 6 1 373 1 380 1.28e-174 491
MsG0480018666.01.T01 MTR_7g064980 30.667 300 168 8 91 355 26 320 4.66e-36 134
MsG0480018666.01.T01 MTR_4g114320 31.507 292 156 9 90 353 123 398 8.80e-36 135
MsG0480018666.01.T01 MTR_5g009500 29.316 307 166 9 90 350 38 339 2.85e-33 127
MsG0480018666.01.T01 MTR_8g027975 28.205 312 165 9 90 350 51 354 1.91e-32 125
MsG0480018666.01.T01 MTR_3g104600 29.653 317 170 8 83 355 28 335 9.07e-32 123
MsG0480018666.01.T01 MTR_2g436930 29.043 303 165 12 92 344 17 319 2.42e-31 121
MsG0480018666.01.T01 MTR_2g436930 26.804 194 116 5 196 363 31 224 3.11e-13 70.5
MsG0480018666.01.T01 MTR_1g012030 31.338 284 159 9 90 349 139 410 2.90e-31 123
MsG0480018666.01.T01 MTR_3g107510 30.272 294 157 10 92 355 124 399 1.54e-30 120
MsG0480018666.01.T01 MTR_6g091800 29.538 325 162 9 66 346 2 303 4.43e-30 117
MsG0480018666.01.T01 MTR_4g119770 27.097 310 174 11 92 349 16 325 2.67e-29 115
MsG0480018666.01.T01 MTR_4g119770 27.919 197 113 6 196 363 30 226 3.85e-15 75.9
MsG0480018666.01.T01 MTR_3g104500 30.612 294 164 10 90 349 34 321 2.04e-27 110
MsG0480018666.01.T01 MTR_3g098460 28.289 304 175 10 77 347 185 478 2.43e-27 112
MsG0480018666.01.T01 MTR_6g091800 27.507 349 162 9 66 346 2 327 1.25e-26 108
MsG0480018666.01.T01 MTR_8g096050 27.972 286 166 8 90 347 227 500 1.80e-25 107
MsG0480018666.01.T01 MTR_3g074490 31.544 298 146 13 92 346 118 400 2.43e-25 106
MsG0480018666.01.T01 MTR_3g074490 26.230 183 121 4 196 373 132 305 1.35e-12 68.9
MsG0480018666.01.T01 MTR_7g084400 29.655 290 153 12 90 347 213 483 4.07e-25 106
MsG0480018666.01.T01 MTR_6g091800 29.545 264 135 7 66 296 2 247 5.56e-25 102
MsG0480018666.01.T01 MTR_5g081150 32.414 290 166 9 90 350 34 322 5.58e-25 103
MsG0480018666.01.T01 MTR_6g091800 29.545 264 135 7 66 296 2 247 5.59e-25 102
MsG0480018666.01.T01 MTR_8g090210 29.333 300 150 13 92 346 112 394 6.52e-23 99.4
MsG0480018666.01.T01 MTR_4g119770 28.571 245 136 10 92 297 16 260 2.32e-21 92.8
MsG0480018666.01.T01 MTR_4g119770 27.919 197 113 6 196 363 30 226 1.77e-15 75.9
MsG0480018666.01.T01 MTR_4g005330 24.916 297 177 8 90 349 66 353 2.35e-21 94.4
MsG0480018666.01.T01 MTR_8g107270 26.667 285 177 8 95 348 20 303 2.62e-21 93.6
MsG0480018666.01.T01 MTR_3g028590 28.621 290 174 10 90 349 97 383 1.92e-20 92.4
MsG0480018666.01.T01 MTR_4g005330 24.662 296 177 8 91 349 1 287 2.02e-20 90.9
MsG0480018666.01.T01 MTR_3g028590 28.621 290 174 10 90 349 93 379 2.22e-20 92.0
MsG0480018666.01.T01 MTR_8g036880 28.571 301 179 10 76 343 86 383 7.22e-20 90.5
MsG0480018666.01.T01 MTR_4g078545 29.577 284 167 10 90 343 75 355 2.72e-19 88.6
MsG0480018666.01.T01 MTR_6g034145 26.054 261 147 6 135 355 4 258 1.93e-18 84.3
MsG0480018666.01.T01 MTR_7g109135 27.148 291 175 12 92 351 24 308 2.38e-18 85.1
MsG0480018666.01.T01 MTR_7g109135 26.408 284 179 10 92 351 24 301 2.76e-18 85.1
MsG0480018666.01.T01 MTR_6g092210 25.882 255 149 6 135 355 4 252 3.00e-18 84.0
MsG0480018666.01.T01 MTR_2g098070 27.931 290 176 9 90 349 66 352 5.51e-18 84.7
MsG0480018666.01.T01 MTR_2g436930 26.404 178 104 4 194 344 52 229 1.05e-17 82.0
MsG0480018666.01.T01 MTR_1g087840 25.714 280 173 12 102 351 31 305 3.11e-16 79.0
MsG0480018666.01.T01 MTR_4g018750 23.891 293 186 9 90 356 15 296 5.76e-16 78.2
MsG0480018666.01.T01 MTR_7g066690 23.973 292 187 9 90 356 17 298 1.36e-15 77.0
MsG0480018666.01.T01 MTR_6g091910 30.534 131 85 1 222 346 75 205 5.25e-15 73.9
MsG0480018666.01.T01 MTR_5g055410 22.896 297 188 9 102 368 33 318 5.97e-15 75.9
MsG0480018666.01.T01 MTR_5g073040 25.088 283 184 8 89 349 38 314 4.43e-14 72.8
MsG0480018666.01.T01 MTR_8g019480 26.368 201 116 4 171 349 31 221 7.33e-13 69.3
MsG0480018666.01.T01 MTR_7g109135 29.885 174 100 8 196 351 40 209 1.27e-12 67.0
MsG0480018666.01.T01 MTR_7g109135 29.885 174 100 8 196 351 61 230 1.90e-12 67.0
MsG0480018666.01.T01 MTR_8g076760 24.296 284 177 10 106 354 30 310 3.86e-12 67.0
MsG0480018666.01.T01 MTR_3g462140 23.264 288 189 10 90 349 15 298 6.47e-12 66.2
MsG0480018666.01.T01 MTR_8g098240 24.382 283 176 11 91 350 321 588 1.36e-11 66.2
MsG0480018666.01.T01 MTR_3g104810 26.519 181 110 2 195 352 47 227 3.56e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018666.01.T01 AT3G51870 60.800 375 132 4 6 366 4 377 2.86e-151 432
MsG0480018666.01.T01 AT5G01500 68.693 329 87 3 51 366 80 405 6.55e-145 417
MsG0480018666.01.T01 AT4G32400 30.903 288 167 9 90 355 114 391 2.70e-34 130
MsG0480018666.01.T01 AT2G37890 31.293 294 162 10 90 349 45 332 1.64e-32 125
MsG0480018666.01.T01 AT4G01100 28.155 309 169 8 90 350 42 345 2.26e-32 125
MsG0480018666.01.T01 AT3G55640 30.897 301 158 9 85 346 33 322 1.07e-31 122
MsG0480018666.01.T01 AT3G55640 30.897 301 158 9 85 346 33 322 1.07e-31 122
MsG0480018666.01.T01 AT4G26180 28.528 326 189 7 78 365 9 328 1.49e-31 122
MsG0480018666.01.T01 AT5G48970 28.313 332 179 12 67 344 3 329 4.28e-31 121
MsG0480018666.01.T01 AT5G48970 30.168 179 100 5 196 349 38 216 1.47e-16 80.5
MsG0480018666.01.T01 AT4G01100 26.687 326 166 8 90 350 42 359 1.12e-30 120
MsG0480018666.01.T01 AT3G53940 28.814 295 170 8 90 350 73 361 3.21e-29 116
MsG0480018666.01.T01 AT4G01100 27.425 299 164 8 100 350 2 295 4.94e-29 114
MsG0480018666.01.T01 AT3G21390 29.114 316 166 12 92 352 21 333 2.58e-28 113
MsG0480018666.01.T01 AT3G21390 27.027 185 112 4 196 357 35 219 8.72e-15 75.1
MsG0480018666.01.T01 AT3G21390 29.114 316 166 12 92 352 43 355 5.01e-28 113
MsG0480018666.01.T01 AT3G21390 27.027 185 112 4 196 357 57 241 1.47e-14 74.7
MsG0480018666.01.T01 AT1G14560 27.723 303 157 6 101 355 38 326 1.56e-27 111
MsG0480018666.01.T01 AT5G51050 30.333 300 148 12 85 347 218 493 2.46e-26 110
MsG0480018666.01.T01 AT4G26180 28.472 288 165 6 78 330 9 290 3.88e-26 106
MsG0480018666.01.T01 AT5G56450 29.530 298 166 10 90 349 34 325 4.03e-25 104
MsG0480018666.01.T01 AT3G20240 28.617 311 164 10 85 352 47 342 1.09e-24 103
MsG0480018666.01.T01 AT5G64970 29.568 301 148 11 92 346 137 419 1.17e-24 104
MsG0480018666.01.T01 AT5G61810 28.472 288 162 8 89 350 64 333 3.99e-24 102
MsG0480018666.01.T01 AT1G14560 28.058 278 138 6 101 330 38 301 4.13e-24 101
MsG0480018666.01.T01 AT5G64970 28.477 302 152 11 91 346 12 295 1.05e-23 100
MsG0480018666.01.T01 AT5G61810 28.472 288 162 8 89 350 207 476 1.12e-23 102
MsG0480018666.01.T01 AT5G48970 26.848 257 143 8 133 344 2 258 8.59e-23 97.1
MsG0480018666.01.T01 AT5G48970 31.724 145 91 3 213 349 1 145 5.04e-16 77.8
MsG0480018666.01.T01 AT5G64970 29.474 285 137 11 92 330 137 403 4.74e-21 94.4
MsG0480018666.01.T01 AT1G14560 29.630 189 105 2 195 355 40 228 8.47e-21 90.5
MsG0480018666.01.T01 AT3G08580 26.006 323 199 10 64 349 52 371 4.62e-20 90.9
MsG0480018666.01.T01 AT3G08580 26.006 323 199 10 64 349 52 371 4.62e-20 90.9
MsG0480018666.01.T01 AT5G13490 26.897 290 180 9 90 349 88 375 1.29e-19 89.7
MsG0480018666.01.T01 AT5G13490 26.897 290 180 9 90 349 88 375 1.29e-19 89.7
MsG0480018666.01.T01 AT4G28390 28.374 289 176 9 90 349 83 369 2.17e-19 89.0
MsG0480018666.01.T01 AT4G28390 28.374 289 176 9 90 349 83 369 2.17e-19 89.0
MsG0480018666.01.T01 AT2G47490 28.114 281 160 11 102 349 29 300 1.01e-18 86.3
MsG0480018666.01.T01 AT3G55640 29.949 197 106 5 85 255 33 223 1.10e-18 85.1
MsG0480018666.01.T01 AT3G55640 29.949 197 106 5 85 255 33 223 1.10e-18 85.1
MsG0480018666.01.T01 AT5G07320 27.076 277 158 9 100 350 219 477 4.04e-18 85.9
MsG0480018666.01.T01 AT1G25380 26.545 275 172 9 102 348 33 305 4.55e-18 85.1
MsG0480018666.01.T01 AT1G25380 29.240 171 103 5 196 350 37 205 2.59e-13 70.9
MsG0480018666.01.T01 AT1G25380 26.545 275 172 9 102 348 33 305 4.55e-18 85.1
MsG0480018666.01.T01 AT1G25380 29.240 171 103 5 196 350 37 205 2.59e-13 70.9
MsG0480018666.01.T01 AT5G17400 26.299 308 182 12 77 348 1 299 8.44e-18 83.6
MsG0480018666.01.T01 AT1G78180 29.431 299 151 12 92 346 130 412 2.29e-17 83.6
MsG0480018666.01.T01 AT2G30160 25.938 320 198 10 61 349 10 321 4.06e-17 82.0
MsG0480018666.01.T01 AT2G30160 22.034 177 134 1 195 367 57 233 4.16e-11 63.9
MsG0480018666.01.T01 AT1G07030 26.667 330 198 12 45 349 6 316 2.70e-15 76.6
MsG0480018666.01.T01 AT3G54110 23.864 264 172 7 90 327 15 275 1.10e-14 74.3
MsG0480018666.01.T01 AT5G58970 23.592 284 190 7 90 348 16 297 1.28e-12 68.2
MsG0480018666.01.T01 AT2G26360 22.189 338 210 12 40 347 60 374 1.93e-12 68.6
MsG0480018666.01.T01 AT5G26200 26.776 183 112 4 195 355 54 236 6.92e-12 66.6
MsG0480018666.01.T01 AT4G39460 25.725 276 169 11 90 350 58 312 3.91e-11 63.9
MsG0480018666.01.T01 AT4G39460 25.725 276 169 11 90 350 58 312 3.91e-11 63.9
MsG0480018666.01.T01 AT4G39460 25.725 276 169 11 90 350 58 312 3.91e-11 63.9
MsG0480018666.01.T01 AT1G72820 27.326 172 108 3 195 349 46 217 5.50e-11 63.9
MsG0480018666.01.T01 AT1G72820 27.326 172 108 3 195 349 46 217 5.50e-11 63.9

Find 117 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGAGGTGGTGGTTAAAT+TGG 0.220101 4:+8357448 None:intergenic
GGTGGAGACGGTGGCGAATT+TGG 0.220482 4:+8357349 None:intergenic
TTCCTTCCCTATCATTGATA+TGG 0.235134 4:+8355237 None:intergenic
GTGGCACAAGATGGAGTTAT+TGG 0.246853 4:-8353910 MsG0480018666.01.T01:CDS
TAGGATAAGTTTGATGGTTT+TGG 0.254529 4:+8357522 None:intergenic
AAGTTCACCATCATTGATTA+TGG 0.254956 4:+8353456 None:intergenic
ACAGTATTAGATGCCATTTC+AGG 0.261132 4:-8354186 MsG0480018666.01.T01:intron
GTAGGACTCAAGTTTGTTCT+AGG 0.268017 4:-8353327 MsG0480018666.01.T01:three_prime_UTR
GGCCTTGGTCCTTCTCTTAT+CGG 0.280665 4:-8354492 MsG0480018666.01.T01:CDS
GAGAAACAATGCAGCATCTT+TGG 0.280947 4:+8357244 None:intergenic
GCATCTAATACTGTCTTATA+AGG 0.297227 4:+8354195 None:intergenic
CTTTGCTTATGAAATTTATA+AGG 0.302156 4:-8355057 MsG0480018666.01.T01:CDS
TTCGTTGTTCGGTTTGGTTT+GGG 0.312231 4:+8357325 None:intergenic
ATTCGTTGTTCGGTTTGGTT+TGG 0.334224 4:+8357324 None:intergenic
GGGAAGGAAGAAGGCATTAG+AGG 0.342831 4:-8355223 MsG0480018666.01.T01:CDS
TTAGAGGTGGTGGTTAAATT+GGG 0.348256 4:+8357449 None:intergenic
CAAAAGTTAACTGCAATATA+TGG 0.353568 4:+8354462 None:intergenic
TAAGAAGCTGAGCCGGCGTC+GGG 0.359061 4:+8357297 None:intergenic
GCTTCTTTCTACTACGGCCT+TGG 0.361517 4:-8354507 MsG0480018666.01.T01:CDS
AAGAAGGCATTAGAGGTTAC+TGG 0.369624 4:-8355216 MsG0480018666.01.T01:CDS
AAAGCAATTCCCACAACTAA+TGG 0.376764 4:+8353398 None:intergenic
CAGACTCATGGAGTGCGAAT+TGG 0.377216 4:-8357067 MsG0480018666.01.T01:CDS
GGCGAATTCGTTGTTCGGTT+TGG 0.378119 4:+8357319 None:intergenic
TAAGGATAGGATAAGTTTGA+TGG 0.379841 4:+8357516 None:intergenic
TTGCAGGCCATATCAATGAT+AGG 0.383329 4:-8355244 MsG0480018666.01.T01:intron
AAGAGCTGAACAGCACTATA+AGG 0.384778 4:+8355077 None:intergenic
GTCGGGGCGAATTCGTTGTT+CGG 0.386237 4:+8357314 None:intergenic
TTTCTCGCCGGTGCTGTTGC+CGG 0.386588 4:-8357227 MsG0480018666.01.T01:CDS
ACACCTGAACATGCAATGTT+TGG 0.390602 4:+8355000 None:intergenic
ATATCTCACTGCTAGCAAAT+TGG 0.395642 4:+8353373 None:intergenic
AGAAACAATGCAGCATCTTT+GGG 0.402197 4:+8357245 None:intergenic
GAAAGTGCTAAGAAGACAAT+TGG 0.415198 4:-8357040 MsG0480018666.01.T01:CDS
GAGTTGTTGAAGAGGTGGTT+GGG 0.416337 4:+8357413 None:intergenic
TTCGTTCTACTGCGTGTGTT+TGG 0.418357 4:+8357549 None:intergenic
CAATGCCAACTAACCTGAAA+TGG 0.419802 4:+8354173 None:intergenic
GTACCAAACATTGCATGTTC+AGG 0.419991 4:-8355003 MsG0480018666.01.T01:CDS
GGAGTTGTTGAAGAGGTGGT+TGG 0.421605 4:+8357412 None:intergenic
AGCAGCTCCGGCAACAGCAC+CGG 0.424640 4:+8357220 None:intergenic
GTTCGGTTTGGTTTGGGAGG+TGG 0.426742 4:+8357331 None:intergenic
CGTAATCTCAGGACATCTAA+AGG 0.428560 4:+8354671 None:intergenic
ATTACAGCTAAAATACATTC+AGG 0.438813 4:+8353279 None:intergenic
ACGAAGACAGATGCAACTTA+AGG 0.441171 4:-8354223 MsG0480018666.01.T01:CDS
CCTTCTCACTAGCAGCAATC+AGG 0.448175 4:+8353525 None:intergenic
TAAAATTATCCATTAGTTGT+GGG 0.456350 4:-8353407 MsG0480018666.01.T01:three_prime_UTR
TTTGGTTTGGGAGGTGGAGA+CGG 0.464583 4:+8357337 None:intergenic
GGGTGAAACGACGTCGTTAG+AGG 0.465059 4:+8357433 None:intergenic
CAAGTGCGACGACGGCGATC+GGG 0.465236 4:+8357270 None:intergenic
GATCACAAGTACCTGCTGTT+TGG 0.466503 4:+8353847 None:intergenic
TTACGATTAGCTGTTGAACC+TGG 0.470496 4:-8354653 MsG0480018666.01.T01:CDS
CGAAGACAGATGCAACTTAA+GGG 0.474525 4:-8354222 MsG0480018666.01.T01:CDS
GTTGAGTTTGTCATAAGGAT+AGG 0.477976 4:+8357503 None:intergenic
ACAAGTGCGACGACGGCGAT+CGG 0.484450 4:+8357269 None:intergenic
GGCATTTCTTTAGTTTGTTG+CGG 0.498494 4:+8353477 None:intergenic
TGTTCGTTGAGTTTGTCATA+AGG 0.498708 4:+8357498 None:intergenic
AATTCTTGAAAGATAGTTAG+CGG 0.503965 4:+8355030 None:intergenic
GTAATCTCAGGACATCTAAA+GGG 0.507991 4:+8354672 None:intergenic
TTAAGAAGCTGAGCCGGCGT+CGG 0.508929 4:+8357296 None:intergenic
ATAAAATTATCCATTAGTTG+TGG 0.515167 4:-8353408 MsG0480018666.01.T01:three_prime_UTR
TTTGGAAGGAATGGTGGTGG+TGG 0.522252 4:+8357367 None:intergenic
CGCCTTGAGCATGGTAAGAG+AGG 0.526243 4:-8354538 MsG0480018666.01.T01:CDS
AGAAATGCCATAATCAATGA+TGG 0.526333 4:-8353463 MsG0480018666.01.T01:exon
TAATCAATGATGGTGAACTT+AGG 0.527251 4:-8353453 MsG0480018666.01.T01:exon
AACGACGTCGTTAGAGGTGG+TGG 0.529351 4:+8357439 None:intergenic
GAAGACAATTGGTTTCATTG+AGG 0.535119 4:-8357029 MsG0480018666.01.T01:intron
TCGAATCAAACTTCTCATGC+AGG 0.539543 4:-8357171 MsG0480018666.01.T01:intron
AGAAGTTTGATTCGATCAAG+TGG 0.545093 4:+8357179 None:intergenic
AAGCATTGGGCACAAATCCT+CGG 0.546969 4:+8353881 None:intergenic
TCGATCAAGTGGAGCAGTGA+CGG 0.556672 4:+8357190 None:intergenic
CACACTTACATGCTATCCTC+TGG 0.561081 4:-8354253 MsG0480018666.01.T01:CDS
CAACAGCTAATCGTAATCTC+AGG 0.561207 4:+8354660 None:intergenic
TTTGGTTGATGCAGGTATTG+TGG 0.565467 4:-8353929 MsG0480018666.01.T01:intron
TTTATAGGTCGCCTTGAGCA+TGG 0.566530 4:-8354547 MsG0480018666.01.T01:intron
CAACGAATTCGCCCCGACGC+CGG 0.566929 4:-8357309 MsG0480018666.01.T01:CDS
TAGAGGTGGTGGTTAAATTG+GGG 0.567609 4:+8357450 None:intergenic
TTGAGCATGGTAAGAGAGGA+AGG 0.567910 4:-8354534 MsG0480018666.01.T01:CDS
GGTGGCGAATTTGGAAGGAA+TGG 0.574574 4:+8357358 None:intergenic
TGAAGGTGGAGTTGTTGAAG+AGG 0.577683 4:+8357405 None:intergenic
GGTTTGGGAGGTGGAGACGG+TGG 0.578467 4:+8357340 None:intergenic
AATGGTGGTGGTGGTTGCGT+CGG 0.578955 4:+8357376 None:intergenic
TACGATTAGCTGTTGAACCT+GGG 0.579092 4:-8354652 MsG0480018666.01.T01:CDS
TGCAGGCCATATCAATGATA+GGG 0.580409 4:-8355243 MsG0480018666.01.T01:intron
GAGACGGTGGCGAATTTGGA+AGG 0.581708 4:+8357353 None:intergenic
GGAGTTATTGGCTTGTACCG+AGG 0.582134 4:-8353898 MsG0480018666.01.T01:CDS
GATGCTGCATTGTTTCTCGC+CGG 0.586437 4:-8357239 MsG0480018666.01.T01:CDS
GCAGGTATTGTGGCACAAGA+TGG 0.586976 4:-8353919 MsG0480018666.01.T01:intron
GGGTGGTTAAGAAGCTGAGC+CGG 0.587213 4:+8357290 None:intergenic
TCAATGATAGGGAAGGAAGA+AGG 0.587858 4:-8355232 MsG0480018666.01.T01:CDS
AGGTGGAGTTGTTGAAGAGG+TGG 0.589863 4:+8357408 None:intergenic
GGCCATATCAATGATAGGGA+AGG 0.590764 4:-8355239 MsG0480018666.01.T01:CDS
GTGCGACGACGGCGATCGGG+TGG 0.593456 4:+8357273 None:intergenic
GGCATTAGAGGTTACTGGAA+GGG 0.594350 4:-8355211 MsG0480018666.01.T01:CDS
CCTGATTGCTGCTAGTGAGA+AGG 0.594558 4:-8353525 MsG0480018666.01.T01:CDS
TAGCAGTGAGATATCTCAGA+AGG 0.596118 4:-8353364 MsG0480018666.01.T01:three_prime_UTR
GGCAAGAGATGCTGAAAGCA+CGG 0.596654 4:+8354275 None:intergenic
GGAGTTTCAAACAATTGCAG+AGG 0.597624 4:-8353504 MsG0480018666.01.T01:CDS
TCTGTCATTGTTCGACACCC+AGG 0.599777 4:+8354635 None:intergenic
TTCCTCTCTTACCATGCTCA+AGG 0.602242 4:+8354536 None:intergenic
GTTGTTCGGTTTGGTTTGGG+AGG 0.603199 4:+8357328 None:intergenic
TAGTGATGCTCACCTGTGGT+AGG 0.606895 4:+8355185 None:intergenic
GGAGCTATTCCGATAAGAGA+AGG 0.610783 4:+8354483 None:intergenic
GGCGAATTTGGAAGGAATGG+TGG 0.612416 4:+8357361 None:intergenic
AGCAGTGAGATATCTCAGAA+GGG 0.619251 4:-8353363 MsG0480018666.01.T01:three_prime_UTR
GAATTTGGAAGGAATGGTGG+TGG 0.624286 4:+8357364 None:intergenic
TTTGGGAACAAGTGCGACGA+CGG 0.629042 4:+8357262 None:intergenic
CTGGAAGGGTAACCTACCAC+AGG 0.641606 4:-8355197 MsG0480018666.01.T01:intron
CAGAGGATAGCATGTAAGTG+TGG 0.643661 4:+8354254 None:intergenic
AGGCATTAGAGGTTACTGGA+AGG 0.648807 4:-8355212 MsG0480018666.01.T01:CDS
GCAGTGAGATATCTCAGAAG+GGG 0.651708 4:-8353362 MsG0480018666.01.T01:three_prime_UTR
TGTCTTCGTACTGTGTCCAG+AGG 0.651781 4:+8354237 None:intergenic
TGAAACGACGTCGTTAGAGG+TGG 0.660799 4:+8357436 None:intergenic
GGTTGCGTCGGTGAAAGTGA+AGG 0.665657 4:+8357388 None:intergenic
TGCGTCGGTGAAAGTGAAGG+TGG 0.665833 4:+8357391 None:intergenic
TTCCGATAAGAGAAGGACCA+AGG 0.667681 4:+8354490 None:intergenic
AAGAAGCTGAGCCGGCGTCG+GGG 0.667870 4:+8357298 None:intergenic
ATTGGGGATATTGTGCCACG+TGG 0.728063 4:+8357466 None:intergenic
CGAACAAAACAGTCGCCACG+TGG 0.729197 4:-8357481 MsG0480018666.01.T01:CDS
TGGGTGTCGAACAATGACAG+AGG 0.760125 4:-8354633 MsG0480018666.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATAAAAAAAATATA+AGG - Chr4:8355140-8355159 MsG0480018666.01.T01:intron 0.0%
!! AAATTTACAGAAAATATTCA+AGG - Chr4:8355851-8355870 MsG0480018666.01.T01:intron 15.0%
!! AATTTACAGAAAATATTCAA+GGG - Chr4:8355852-8355871 MsG0480018666.01.T01:intron 15.0%
!! ACTTAATATTATGAGTTTAA+TGG - Chr4:8354131-8354150 MsG0480018666.01.T01:intron 15.0%
!! CAGAACATTAATATATTTAT+TGG - Chr4:8355530-8355549 MsG0480018666.01.T01:intron 15.0%
!! TTATGAGTATATTTATATGT+AGG - Chr4:8356795-8356814 MsG0480018666.01.T01:intron 15.0%
!!! AATAAATTGATTTTTGAGTA+AGG + Chr4:8354790-8354809 None:intergenic 15.0%
!!! ATGATATATTTAGTTGATAA+TGG - Chr4:8357181-8357200 MsG0480018666.01.T01:CDS 15.0%
!!! GGATTTTATATTTTTTTTGT+TGG - Chr4:8355418-8355437 MsG0480018666.01.T01:intron 15.0%
!! AAAATATAAAATCCTTGATC+AGG + Chr4:8355412-8355431 None:intergenic 20.0%
!! AAAATTATTGTCAATGAGTT+TGG + Chr4:8355471-8355490 None:intergenic 20.0%
!! AAATATAAAATCCTTGATCA+GGG + Chr4:8355411-8355430 None:intergenic 20.0%
!! AAATATTTGTAAACCATACA+AGG + Chr4:8355976-8355995 None:intergenic 20.0%
!! AAATTATTGTCAATGAGTTT+GGG + Chr4:8355470-8355489 None:intergenic 20.0%
!! ATAAAATTATCCATTAGTTG+TGG - Chr4:8357407-8357426 MsG0480018666.01.T01:CDS 20.0%
!! ATATGATATCATGTCAATTA+AGG + Chr4:8354060-8354079 None:intergenic 20.0%
!! ATCAGCAAAATTAGAAATTA+AGG + Chr4:8357037-8357056 None:intergenic 20.0%
!! CACTTTACAAAAAAAATTAC+TGG + Chr4:8356057-8356076 None:intergenic 20.0%
!! CATCAACCAAAATATTAATA+TGG + Chr4:8356877-8356896 None:intergenic 20.0%
!! CTTTGCTTATGAAATTTATA+AGG - Chr4:8355758-8355777 MsG0480018666.01.T01:intron 20.0%
!! GTAAATTTGCAAAAAATAAG+TGG - Chr4:8357085-8357104 MsG0480018666.01.T01:intron 20.0%
!! TAAAATTATCCATTAGTTGT+GGG - Chr4:8357408-8357427 MsG0480018666.01.T01:CDS 20.0%
!!! AAAAAGAACATTTTCATCAT+GGG - Chr4:8354535-8354554 MsG0480018666.01.T01:CDS 20.0%
!!! AATAATGATTTTTACACTGT+CGG - Chr4:8354224-8354243 MsG0480018666.01.T01:CDS 20.0%
!!! AATTGTTTTAGTTCTGTAAT+TGG - Chr4:8355312-8355331 MsG0480018666.01.T01:intron 20.0%
!!! AATTTTCATGTAGTTCTTTT+TGG - Chr4:8355372-8355391 MsG0480018666.01.T01:intron 20.0%
!!! CTTATTTTTTGCAAATTTAC+TGG + Chr4:8357085-8357104 None:intergenic 20.0%
!!! TAAAAAGAACATTTTCATCA+TGG - Chr4:8354534-8354553 MsG0480018666.01.T01:CDS 20.0%
!!! TAACTGCCATATTAATATTT+TGG - Chr4:8356868-8356887 MsG0480018666.01.T01:intron 20.0%
! AAAGACTACTCAACATTATA+AGG + Chr4:8355677-8355696 None:intergenic 25.0%
! AAGAACTACATGAAAATTGA+TGG + Chr4:8355370-8355389 None:intergenic 25.0%
! AAGTGAATATGTCAACTTAT+CGG + Chr4:8354200-8354219 None:intergenic 25.0%
! AATATAAAATCCTTGATCAG+GGG + Chr4:8355410-8355429 None:intergenic 25.0%
! AATTATTGTCAATGAGTTTG+GGG + Chr4:8355469-8355488 None:intergenic 25.0%
! AATTCTTGAAAGATAGTTAG+CGG + Chr4:8355788-8355807 None:intergenic 25.0%
! AGCAAAATTAGAAATTAAGG+AGG + Chr4:8357034-8357053 None:intergenic 25.0%
! ATGTTTATGAAATGACATTG+TGG - Chr4:8353718-8353737 MsG0480018666.01.T01:intron 25.0%
! ATTACAGCTAAAATACATTC+AGG + Chr4:8357539-8357558 None:intergenic 25.0%
! CAAAAGTTAACTGCAATATA+TGG + Chr4:8356356-8356375 None:intergenic 25.0%
! GTACTAAATGTGTAAGTTAA+TGG - Chr4:8355440-8355459 MsG0480018666.01.T01:intron 25.0%
! GTTACACATACATATAATTG+AGG - Chr4:8353986-8354005 MsG0480018666.01.T01:intron 25.0%
! TAAATGCTTAACAACTGTTT+CGG - Chr4:8354303-8354322 MsG0480018666.01.T01:CDS 25.0%
! TTCATTAAACGGAAAGATAT+AGG + Chr4:8356235-8356254 None:intergenic 25.0%
! TTGACATGATATCATATCAT+TGG - Chr4:8354063-8354082 MsG0480018666.01.T01:intron 25.0%
! TTTAGTCTATTATCCATACA+AGG + Chr4:8356467-8356486 None:intergenic 25.0%
!! ATTCTAAAAGACACAATCAT+TGG + Chr4:8354938-8354957 None:intergenic 25.0%
!!! ATTAATATTTTGGTTGATGC+AGG - Chr4:8356878-8356897 MsG0480018666.01.T01:intron 25.0%
!!! GGTAGTTTTTTTAAAGCATT+GGG + Chr4:8356950-8356969 None:intergenic 25.0%
!!! TAATTTTTAGCGACATTAGA+TGG - Chr4:8355484-8355503 MsG0480018666.01.T01:intron 25.0%
!!! TGGTAGTTTTTTTAAAGCAT+TGG + Chr4:8356951-8356970 None:intergenic 25.0%
!!! TTGTTTTAGTGTTTCTTTTC+AGG - Chr4:8355702-8355721 MsG0480018666.01.T01:intron 25.0%
AATTAGAAATTAAGGAGGCA+TGG + Chr4:8357029-8357048 None:intergenic 30.0%
AGAAATGCCATAATCAATGA+TGG - Chr4:8357352-8357371 MsG0480018666.01.T01:CDS 30.0%
AGTAAGATACATTGACATCA+AGG + Chr4:8356100-8356119 None:intergenic 30.0%
AGTTAATTGGTTGTGGAATT+TGG - Chr4:8354331-8354350 MsG0480018666.01.T01:CDS 30.0%
CCACAATTCTGTTCATTAAA+CGG + Chr4:8356246-8356265 None:intergenic 30.0%
CTAAAACAATTACTAACCAG+AGG + Chr4:8355303-8355322 None:intergenic 30.0%
CTTATTGCTATAACAGCTAA+AGG + Chr4:8356775-8356794 None:intergenic 30.0%
GAATTCAAGACTTCATTTGA+TGG + Chr4:8354638-8354657 None:intergenic 30.0%
GCATCTAATACTGTCTTATA+AGG + Chr4:8356623-8356642 None:intergenic 30.0%
GGAATTTGGTTATACCATTT+CGG - Chr4:8354345-8354364 MsG0480018666.01.T01:intron 30.0%
GGAGTTACAATAATACACAA+GGG + Chr4:8354873-8354892 None:intergenic 30.0%
GGATAAAATCCTGTTGAAAT+CGG - Chr4:8357106-8357125 MsG0480018666.01.T01:intron 30.0%
GTTTAATGGAAGTAAACTGA+CGG - Chr4:8354145-8354164 MsG0480018666.01.T01:intron 30.0%
TAAAAAAACTACCAAACAGC+AGG - Chr4:8356957-8356976 MsG0480018666.01.T01:intron 30.0%
TAAGGATAGGATAAGTTTGA+TGG + Chr4:8353302-8353321 None:intergenic 30.0%
TCTATTATCCATACAAGGTT+AGG + Chr4:8356462-8356481 None:intergenic 30.0%
TGATATTTGATATACACCGT+CGG - Chr4:8353830-8353849 MsG0480018666.01.T01:intron 30.0%
TGGAGTTACAATAATACACA+AGG + Chr4:8354874-8354893 None:intergenic 30.0%
TGTACACTAGACAGTTAAAT+TGG + Chr4:8354894-8354913 None:intergenic 30.0%
TGTTTCGGTTAGTAGTTAAT+TGG - Chr4:8354318-8354337 MsG0480018666.01.T01:CDS 30.0%
TTCAACCACATTAAATGATG+TGG + Chr4:8354017-8354036 None:intergenic 30.0%
TTGTGTGTTCTTAGTAAGTT+GGG + Chr4:8357154-8357173 None:intergenic 30.0%
TTTGTAAACCATACAAGGAT+AGG + Chr4:8355971-8355990 None:intergenic 30.0%
! AACAAAAAACCGATTTCAAC+AGG + Chr4:8357118-8357137 None:intergenic 30.0%
! AACAGAATTGTGGCTTTTAT+AGG - Chr4:8356253-8356272 MsG0480018666.01.T01:intron 30.0%
! AAGTTCACCATCATTGATTA+TGG + Chr4:8357362-8357381 None:intergenic 30.0%
! CACATCTATTTTATCTCAAC+CGG - Chr4:8354846-8354865 MsG0480018666.01.T01:intron 30.0%
! TAATCAATGATGGTGAACTT+AGG - Chr4:8357362-8357381 MsG0480018666.01.T01:CDS 30.0%
!! TAGGATAAGTTTGATGGTTT+TGG + Chr4:8353296-8353315 None:intergenic 30.0%
!! TATCGGTTTACTTGAATATG+TGG + Chr4:8354183-8354202 None:intergenic 30.0%
!! TCAAGTAATGCATTTTGAAG+AGG + Chr4:8354376-8354395 None:intergenic 30.0%
!!! CTCTATCTTTTTAAGTGCAT+TGG - Chr4:8356405-8356424 MsG0480018666.01.T01:intron 30.0%
!!! TGTTTCTTTTCAGGTGATTA+GGG - Chr4:8355711-8355730 MsG0480018666.01.T01:intron 30.0%
!!! TTTTTAAGTGCATTGGAGTT+TGG - Chr4:8356412-8356431 MsG0480018666.01.T01:intron 30.0%
AAAGCAATTCCCACAACTAA+TGG + Chr4:8357420-8357439 None:intergenic 35.0%
AATCCAGTTTGCAGTCTAAA+GGG - Chr4:8355336-8355355 MsG0480018666.01.T01:intron 35.0%
AGAAACAATGCAGCATCTTT+GGG + Chr4:8353573-8353592 None:intergenic 35.0%
AGACACAATCATTGGATGTT+AGG + Chr4:8354930-8354949 None:intergenic 35.0%
AGGCCTATTCACAATTCTAT+CGG + Chr4:8354770-8354789 None:intergenic 35.0%
ATATCTCACTGCTAGCAAAT+TGG + Chr4:8357445-8357464 None:intergenic 35.0%
CCGTTTAATGAACAGAATTG+TGG - Chr4:8356243-8356262 MsG0480018666.01.T01:intron 35.0%
CGGTTGAGATAAAATAGATG+TGG + Chr4:8354848-8354867 None:intergenic 35.0%
GGTTAGTAGTTAATTGGTTG+TGG - Chr4:8354324-8354343 MsG0480018666.01.T01:CDS 35.0%
GTAATCTCAGGACATCTAAA+GGG + Chr4:8356146-8356165 None:intergenic 35.0%
GTTGAGTTTGTCATAAGGAT+AGG + Chr4:8353315-8353334 None:intergenic 35.0%
GTTGTGTGTTCTTAGTAAGT+TGG + Chr4:8357155-8357174 None:intergenic 35.0%
TAAGACATCCTAACCTTGTA+TGG - Chr4:8356451-8356470 MsG0480018666.01.T01:intron 35.0%
TAATCCAGTTTGCAGTCTAA+AGG - Chr4:8355335-8355354 MsG0480018666.01.T01:intron 35.0%
TACAATAATACACAAGGGTC+CGG + Chr4:8354868-8354887 None:intergenic 35.0%
TGATGCCACATCATTTAATG+TGG - Chr4:8354009-8354028 MsG0480018666.01.T01:intron 35.0%
TGGATACATGATGTCAAAGA+TGG + Chr4:8354579-8354598 None:intergenic 35.0%
TGTTCGTTGAGTTTGTCATA+AGG + Chr4:8353320-8353339 None:intergenic 35.0%
TTATGAGACCTATCCTTGTA+TGG - Chr4:8355960-8355979 MsG0480018666.01.T01:intron 35.0%
TTCCTTCCCTATCATTGATA+TGG + Chr4:8355581-8355600 None:intergenic 35.0%
TTGAAGAGGAAATACCGAAA+TGG + Chr4:8354362-8354381 None:intergenic 35.0%
! AACAATGACAGAGGTATATG+TGG - Chr4:8356191-8356210 MsG0480018666.01.T01:intron 35.0%
! AAGGGGACTGTAAATTTTGT+AGG - Chr4:8357470-8357489 MsG0480018666.01.T01:CDS 35.0%
! ACAATGACAGAGGTATATGT+GGG - Chr4:8356192-8356211 MsG0480018666.01.T01:intron 35.0%
! ACAGTATTAGATGCCATTTC+AGG - Chr4:8356629-8356648 MsG0480018666.01.T01:intron 35.0%
! AGAAGTTTGATTCGATCAAG+TGG + Chr4:8353639-8353658 None:intergenic 35.0%
! ATTTTTACACTGTCGGTATG+CGG - Chr4:8354231-8354250 MsG0480018666.01.T01:CDS 35.0%
! GAAGACAATTGGTTTCATTG+AGG - Chr4:8353786-8353805 MsG0480018666.01.T01:intron 35.0%
! GCAAGTTGAAGAGATCAAAA+TGG + Chr4:8355028-8355047 None:intergenic 35.0%
! GCATGTTTTGCACAGATAAA+GGG + Chr4:8356746-8356765 None:intergenic 35.0%
! GGTTTTGCTTCTTTCTACTA+CGG - Chr4:8356302-8356321 MsG0480018666.01.T01:intron 35.0%
! GTTCTCTTTTGATACTTCTC+TGG + Chr4:8356500-8356519 None:intergenic 35.0%
! TAGCGACATTAGATGGTTTT+TGG - Chr4:8355491-8355510 MsG0480018666.01.T01:intron 35.0%
! TCATTTGATGGTCTTTGAAC+AGG + Chr4:8354626-8354645 None:intergenic 35.0%
! TTAGAGGTGGTGGTTAAATT+GGG + Chr4:8353369-8353388 None:intergenic 35.0%
!! AAAATAGATGTGGCTCTAGA+AGG + Chr4:8354838-8354857 None:intergenic 35.0%
!! ACTTTGAAGCAGATTGTGAT+TGG - Chr4:8357215-8357234 MsG0480018666.01.T01:CDS 35.0%
!! CTTAAGTTGACAAGATTTGC+AGG - Chr4:8355555-8355574 MsG0480018666.01.T01:intron 35.0%
!! GAAAGTGCTAAGAAGACAAT+TGG - Chr4:8353775-8353794 MsG0480018666.01.T01:intron 35.0%
!! GGCATTTCTTTAGTTTGTTG+CGG + Chr4:8357341-8357360 None:intergenic 35.0%
!!! GTGTTTCTTTTCAGGTGATT+AGG - Chr4:8355710-8355729 MsG0480018666.01.T01:intron 35.0%
AAGAGCTGAACAGCACTATA+AGG + Chr4:8355741-8355760 None:intergenic 40.0%
AAGAGTTCCTCAAATAGCTC+TGG - Chr4:8354598-8354617 MsG0480018666.01.T01:intron 40.0%
ACACCTGAACATGCAATGTT+TGG + Chr4:8355818-8355837 None:intergenic 40.0%
ACGAAGACAGATGCAACTTA+AGG - Chr4:8356592-8356611 MsG0480018666.01.T01:intron 40.0%
AGAGCTATTTGAGGAACTCT+TGG + Chr4:8354599-8354618 None:intergenic 40.0%
AGCAGTGAGATATCTCAGAA+GGG - Chr4:8357452-8357471 MsG0480018666.01.T01:CDS 40.0%
ATACCCTTTAGACTGCAAAC+TGG + Chr4:8355342-8355361 None:intergenic 40.0%
ATATGTAGGCACACACTGAT+AGG - Chr4:8356809-8356828 MsG0480018666.01.T01:intron 40.0%
CAACAGCTAATCGTAATCTC+AGG + Chr4:8356158-8356177 None:intergenic 40.0%
CAATGCCAACTAACCTGAAA+TGG + Chr4:8356645-8356664 None:intergenic 40.0%
CGAAGACAGATGCAACTTAA+GGG - Chr4:8356593-8356612 MsG0480018666.01.T01:intron 40.0%
CGTAATCTCAGGACATCTAA+AGG + Chr4:8356147-8356166 None:intergenic 40.0%
CTGCCGATAGAATTGTGAAT+AGG - Chr4:8354764-8354783 MsG0480018666.01.T01:intron 40.0%
GAGAAACAATGCAGCATCTT+TGG + Chr4:8353574-8353593 None:intergenic 40.0%
GGAGTTTCAAACAATTGCAG+AGG - Chr4:8357311-8357330 MsG0480018666.01.T01:CDS 40.0%
GTAATTAACTCCCCTGATCA+AGG - Chr4:8355397-8355416 MsG0480018666.01.T01:intron 40.0%
GTACCAAACATTGCATGTTC+AGG - Chr4:8355812-8355831 MsG0480018666.01.T01:intron 40.0%
GTCAAAGATGGTAACAGAAG+CGG + Chr4:8354567-8354586 None:intergenic 40.0%
TAGCAGTGAGATATCTCAGA+AGG - Chr4:8357451-8357470 MsG0480018666.01.T01:CDS 40.0%
TATGTAGGCACACACTGATA+GGG - Chr4:8356810-8356829 MsG0480018666.01.T01:intron 40.0%
TATTGTCAATGAGTTTGGGG+AGG + Chr4:8355466-8355485 None:intergenic 40.0%
TCAATGATAGGGAAGGAAGA+AGG - Chr4:8355583-8355602 MsG0480018666.01.T01:intron 40.0%
TCGAATCAAACTTCTCATGC+AGG - Chr4:8353644-8353663 MsG0480018666.01.T01:intron 40.0%
TGCAGGCCATATCAATGATA+GGG - Chr4:8355572-8355591 MsG0480018666.01.T01:intron 40.0%
TTGCAGGCCATATCAATGAT+AGG - Chr4:8355571-8355590 MsG0480018666.01.T01:intron 40.0%
! ATATGTACGACTTTTGCCTC+TGG - Chr4:8355284-8355303 MsG0480018666.01.T01:intron 40.0%
! CGCATGTTTTGCACAGATAA+AGG + Chr4:8356747-8356766 None:intergenic 40.0%
! CTCTTTCTTTTCCACTACTC+AGG + Chr4:8354714-8354733 None:intergenic 40.0%
! GTAGGACTCAAGTTTGTTCT+AGG - Chr4:8357488-8357507 MsG0480018666.01.T01:CDS 40.0%
! GTGTAACTCTTTTACACCGA+CGG + Chr4:8353849-8353868 None:intergenic 40.0%
! GTTAGAGGTGGTGGTTAAAT+TGG + Chr4:8353370-8353389 None:intergenic 40.0%
! TACGATTAGCTGTTGAACCT+GGG - Chr4:8356163-8356182 MsG0480018666.01.T01:intron 40.0%
! TAGAGGTGGTGGTTAAATTG+GGG + Chr4:8353368-8353387 None:intergenic 40.0%
! TTACGATTAGCTGTTGAACC+TGG - Chr4:8356162-8356181 MsG0480018666.01.T01:intron 40.0%
! TTTGGTTGATGCAGGTATTG+TGG - Chr4:8356886-8356905 MsG0480018666.01.T01:intron 40.0%
!! AAGAAGGCATTAGAGGTTAC+TGG - Chr4:8355599-8355618 MsG0480018666.01.T01:intron 40.0%
!! AGATGCCATTTCAGGTTAGT+TGG - Chr4:8356637-8356656 MsG0480018666.01.T01:intron 40.0%
!! ATTCGTTGTTCGGTTTGGTT+TGG + Chr4:8353494-8353513 None:intergenic 40.0%
!! TTCGTTGTTCGGTTTGGTTT+GGG + Chr4:8353493-8353512 None:intergenic 40.0%
!!! TGTGGTTTTTTGCAGACTCA+TGG - Chr4:8353736-8353755 MsG0480018666.01.T01:intron 40.0%
AACGATGAGCTCTCTGTTGT+CGG - Chr4:8355879-8355898 MsG0480018666.01.T01:intron 45.0%
AATGCAAGTCGTGCATGAGA+TGG + Chr4:8355248-8355267 None:intergenic 45.0%
ACAGGTTCCAGAGCTATTTG+AGG + Chr4:8354608-8354627 None:intergenic 45.0%
ACTCAGGAATGCTCTAGCAT+AGG + Chr4:8354698-8354717 None:intergenic 45.0%
AGGCATTAGAGGTTACTGGA+AGG - Chr4:8355603-8355622 MsG0480018666.01.T01:intron 45.0%
CACACTTACATGCTATCCTC+TGG - Chr4:8356562-8356581 MsG0480018666.01.T01:intron 45.0%
CAGAGGATAGCATGTAAGTG+TGG + Chr4:8356564-8356583 None:intergenic 45.0%
GAATTTGGAAGGAATGGTGG+TGG + Chr4:8353454-8353473 None:intergenic 45.0%
GAGTTGTTGAAGAGGTGGTT+GGG + Chr4:8353405-8353424 None:intergenic 45.0%
GATCACAAGTACCTGCTGTT+TGG + Chr4:8356971-8356990 None:intergenic 45.0%
GCAGTGAGATATCTCAGAAG+GGG - Chr4:8357453-8357472 MsG0480018666.01.T01:CDS 45.0%
GGAGCTATTCCGATAAGAGA+AGG + Chr4:8356335-8356354 None:intergenic 45.0%
GGCATTAGAGGTTACTGGAA+GGG - Chr4:8355604-8355623 MsG0480018666.01.T01:intron 45.0%
GGCCATATCAATGATAGGGA+AGG - Chr4:8355576-8355595 MsG0480018666.01.T01:intron 45.0%
GTATGAGTATGATGCGAGTG+TGG - Chr4:8354406-8354425 MsG0480018666.01.T01:intron 45.0%
GTGGCACAAGATGGAGTTAT+TGG - Chr4:8356905-8356924 MsG0480018666.01.T01:intron 45.0%
TATCTAGTGATGCTCACCTG+TGG + Chr4:8355637-8355656 None:intergenic 45.0%
TCTAGAAGGAGGGGAACATT+TGG + Chr4:8354824-8354843 None:intergenic 45.0%
TCTAGCATAGGACCTATCAC+AGG + Chr4:8354686-8354705 None:intergenic 45.0%
TGAAGGTGGAGTTGTTGAAG+AGG + Chr4:8353413-8353432 None:intergenic 45.0%
TTCCGATAAGAGAAGGACCA+AGG + Chr4:8356328-8356347 None:intergenic 45.0%
TTCCTCTCTTACCATGCTCA+AGG + Chr4:8356282-8356301 None:intergenic 45.0%
TTCGTTCTACTGCGTGTGTT+TGG + Chr4:8353269-8353288 None:intergenic 45.0%
TTGAGCATGGTAAGAGAGGA+AGG - Chr4:8356281-8356300 MsG0480018666.01.T01:intron 45.0%
TTTATAGGTCGCCTTGAGCA+TGG - Chr4:8356268-8356287 MsG0480018666.01.T01:intron 45.0%
!! AAGCATTGGGCACAAATCCT+CGG + Chr4:8356937-8356956 None:intergenic 45.0%
!! ATAGATGTGGCTCTAGAAGG+AGG + Chr4:8354835-8354854 None:intergenic 45.0%
!! TAGATGTGGCTCTAGAAGGA+GGG + Chr4:8354834-8354853 None:intergenic 45.0%
AGGTGGAGTTGTTGAAGAGG+TGG + Chr4:8353410-8353429 None:intergenic 50.0%
ATTGGGGATATTGTGCCACG+TGG + Chr4:8353352-8353371 None:intergenic 50.0%
CAGACTCATGGAGTGCGAAT+TGG - Chr4:8353748-8353767 MsG0480018666.01.T01:intron 50.0%
CCTGATTGCTGCTAGTGAGA+AGG - Chr4:8357290-8357309 MsG0480018666.01.T01:CDS 50.0%
CCTTCTCACTAGCAGCAATC+AGG + Chr4:8357293-8357312 None:intergenic 50.0%
GCAGCTACTGATCCTGTGAT+AGG - Chr4:8354671-8354690 MsG0480018666.01.T01:CDS 50.0%
GCTTCTTTCTACTACGGCCT+TGG - Chr4:8356308-8356327 MsG0480018666.01.T01:intron 50.0%
GGAGTTGTTGAAGAGGTGGT+TGG + Chr4:8353406-8353425 None:intergenic 50.0%
GGCAAGAGATGCTGAAAGCA+CGG + Chr4:8356543-8356562 None:intergenic 50.0%
GGCCTTGGTCCTTCTCTTAT+CGG - Chr4:8356323-8356342 MsG0480018666.01.T01:intron 50.0%
GGCGAATTCGTTGTTCGGTT+TGG + Chr4:8353499-8353518 None:intergenic 50.0%
GGCGAATTTGGAAGGAATGG+TGG + Chr4:8353457-8353476 None:intergenic 50.0%
GGTGGCGAATTTGGAAGGAA+TGG + Chr4:8353460-8353479 None:intergenic 50.0%
TAGTGATGCTCACCTGTGGT+AGG + Chr4:8355633-8355652 None:intergenic 50.0%
TCGATCAAGTGGAGCAGTGA+CGG + Chr4:8353628-8353647 None:intergenic 50.0%
TCTGTCATTGTTCGACACCC+AGG + Chr4:8356183-8356202 None:intergenic 50.0%
TGAAACGACGTCGTTAGAGG+TGG + Chr4:8353382-8353401 None:intergenic 50.0%
TGTCTTCGTACTGTGTCCAG+AGG + Chr4:8356581-8356600 None:intergenic 50.0%
TTTGGGAACAAGTGCGACGA+CGG + Chr4:8353556-8353575 None:intergenic 50.0%
! GATGCTGCATTGTTTCTCGC+CGG - Chr4:8353576-8353595 MsG0480018666.01.T01:intron 50.0%
! GCAGGTATTGTGGCACAAGA+TGG - Chr4:8356896-8356915 MsG0480018666.01.T01:intron 50.0%
! GCTAGAGCATTCCTGAGTAG+TGG - Chr4:8354700-8354719 MsG0480018666.01.T01:intron 50.0%
!! AGATGTGGCTCTAGAAGGAG+GGG + Chr4:8354833-8354852 None:intergenic 50.0%
!! GGAGTTATTGGCTTGTACCG+AGG - Chr4:8356917-8356936 MsG0480018666.01.T01:intron 50.0%
!! GGGAAGGAAGAAGGCATTAG+AGG - Chr4:8355592-8355611 MsG0480018666.01.T01:intron 50.0%
!! GTTGTTCGGTTTGGTTTGGG+AGG + Chr4:8353490-8353509 None:intergenic 50.0%
!! TGGGTGTCGAACAATGACAG+AGG - Chr4:8356182-8356201 MsG0480018666.01.T01:intron 50.0%
!! TTTGGAAGGAATGGTGGTGG+TGG + Chr4:8353451-8353470 None:intergenic 50.0%
!! TTTGGTTTGGGAGGTGGAGA+CGG + Chr4:8353481-8353500 None:intergenic 50.0%
AACGACGTCGTTAGAGGTGG+TGG + Chr4:8353379-8353398 None:intergenic 55.0%
AGTAGCTGCAGAGCTTGCAG+AGG + Chr4:8354660-8354679 None:intergenic 55.0%
CGAACAAAACAGTCGCCACG+TGG - Chr4:8353334-8353353 MsG0480018666.01.T01:three_prime_UTR 55.0%
CGCCTTGAGCATGGTAAGAG+AGG - Chr4:8356277-8356296 MsG0480018666.01.T01:intron 55.0%
CTGGAAGGGTAACCTACCAC+AGG - Chr4:8355618-8355637 MsG0480018666.01.T01:intron 55.0%
GAGACGGTGGCGAATTTGGA+AGG + Chr4:8353465-8353484 None:intergenic 55.0%
GGGTGAAACGACGTCGTTAG+AGG + Chr4:8353385-8353404 None:intergenic 55.0%
GGGTGGTTAAGAAGCTGAGC+CGG + Chr4:8353528-8353547 None:intergenic 55.0%
GTCGGGGCGAATTCGTTGTT+CGG + Chr4:8353504-8353523 None:intergenic 55.0%
GTTGTCGGAAGACTTGCAGC+AGG - Chr4:8355894-8355913 MsG0480018666.01.T01:intron 55.0%
TTAAGAAGCTGAGCCGGCGT+CGG + Chr4:8353522-8353541 None:intergenic 55.0%
! CTTGCAGCAGGTGCTTTTGC+AGG - Chr4:8355906-8355925 MsG0480018666.01.T01:intron 55.0%
! GGTTGCGTCGGTGAAAGTGA+AGG + Chr4:8353430-8353449 None:intergenic 55.0%
! TGCGTCGGTGAAAGTGAAGG+TGG + Chr4:8353427-8353446 None:intergenic 55.0%
!! AATGGTGGTGGTGGTTGCGT+CGG + Chr4:8353442-8353461 None:intergenic 55.0%
!! GACGGTTTTAGCAGCAGCTC+CGG + Chr4:8353610-8353629 None:intergenic 55.0%
!! GTTCGGTTTGGTTTGGGAGG+TGG + Chr4:8353487-8353506 None:intergenic 55.0%
ACAAGTGCGACGACGGCGAT+CGG + Chr4:8353549-8353568 None:intergenic 60.0%
CACTGTCGGTATGCGGTGCT+TGG - Chr4:8354238-8354257 MsG0480018666.01.T01:CDS 60.0%
GGTGGAGACGGTGGCGAATT+TGG + Chr4:8353469-8353488 None:intergenic 60.0%
TAAGAAGCTGAGCCGGCGTC+GGG + Chr4:8353521-8353540 None:intergenic 60.0%
!! TTTCTCGCCGGTGCTGTTGC+CGG - Chr4:8353588-8353607 MsG0480018666.01.T01:intron 60.0%
AAGAAGCTGAGCCGGCGTCG+GGG + Chr4:8353520-8353539 None:intergenic 65.0%
AGCAGCTCCGGCAACAGCAC+CGG + Chr4:8353598-8353617 None:intergenic 65.0%
CAACGAATTCGCCCCGACGC+CGG - Chr4:8353506-8353525 MsG0480018666.01.T01:CDS 65.0%
CAAGTGCGACGACGGCGATC+GGG + Chr4:8353548-8353567 None:intergenic 65.0%
GGTTTGGGAGGTGGAGACGG+TGG + Chr4:8353478-8353497 None:intergenic 65.0%
GTGCGACGACGGCGATCGGG+TGG + Chr4:8353545-8353564 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 8353247 8357590 8353247 ID=MsG0480018666.01;Name=MsG0480018666.01
Chr4 mRNA 8353247 8357590 8353247 ID=MsG0480018666.01.T01;Parent=MsG0480018666.01;Name=MsG0480018666.01.T01;_AED=0.41;_eAED=0.43;_QI=74|0.87|0.88|1|1|1|9|219|373
Chr4 exon 8353247 8353580 8353247 ID=MsG0480018666.01.T01:exon:2681;Parent=MsG0480018666.01.T01
Chr4 exon 8353859 8353937 8353859 ID=MsG0480018666.01.T01:exon:2680;Parent=MsG0480018666.01.T01
Chr4 exon 8354187 8354356 8354187 ID=MsG0480018666.01.T01:exon:2679;Parent=MsG0480018666.01.T01
Chr4 exon 8354450 8354562 8354450 ID=MsG0480018666.01.T01:exon:2678;Parent=MsG0480018666.01.T01
Chr4 exon 8354634 8354701 8354634 ID=MsG0480018666.01.T01:exon:2677;Parent=MsG0480018666.01.T01
Chr4 exon 8355002 8355113 8355002 ID=MsG0480018666.01.T01:exon:2676;Parent=MsG0480018666.01.T01
Chr4 exon 8355198 8355260 8355198 ID=MsG0480018666.01.T01:exon:2675;Parent=MsG0480018666.01.T01
Chr4 exon 8357030 8357086 8357030 ID=MsG0480018666.01.T01:exon:2674;Parent=MsG0480018666.01.T01
Chr4 exon 8357172 8357590 8357172 ID=MsG0480018666.01.T01:exon:2673;Parent=MsG0480018666.01.T01
Chr4 five_prime_UTR 8357517 8357590 8357517 ID=MsG0480018666.01.T01:five_prime_utr;Parent=MsG0480018666.01.T01
Chr4 CDS 8357172 8357516 8357172 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8357030 8357086 8357030 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8355198 8355260 8355198 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8355002 8355113 8355002 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8354634 8354701 8354634 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8354450 8354562 8354450 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8354187 8354356 8354187 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8353859 8353937 8353859 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 CDS 8353466 8353580 8353466 ID=MsG0480018666.01.T01:cds;Parent=MsG0480018666.01.T01
Chr4 three_prime_UTR 8353247 8353465 8353247 ID=MsG0480018666.01.T01:three_prime_utr;Parent=MsG0480018666.01.T01
Gene Sequence

>MsG0480018666.01.T01

ATGACAAACTCAACGAACAAAACAGTCGCCACGTGGCACAATATCCCCAATTTAACCACCACCTCTAACGACGTCGTTTCACCCAACCACCTCTTCAACAACTCCACCTTCACTTTCACCGACGCAACCACCACCACCATTCCTTCCAAATTCGCCACCGTCTCCACCTCCCAAACCAAACCGAACAACGAATTCGCCCCGACGCCGGCTCAGCTTCTTAACCACCCGATCGCCGTCGTCGCACTTGTTCCCAAAGATGCTGCATTGTTTCTCGCCGGTGCTGTTGCCGGAGCTGCTGCTAAAACCGTCACTGCTCCACTTGATCGAATCAAACTTCTCATGCAGACTCATGGAGTGCGAATTGGACAAGAAAGTGCTAAGAAGACAATTGGTTTCATTGAGGCCATATCAATGATAGGGAAGGAAGAAGGCATTAGAGGTTACTGGAAGGGTAACCTACCACAGGTGATTAGGGTATACCTTATAGTGCTGTTCAGCTCTTTGCTTATGAAATTTATAAGGTTAACCGCTAACTATCTTTCAAGAATTACTTGTACCAAACATTGCATGTTCAGGTATAACTACCCTTTAGATGTCCTGAGATTACGATTAGCTGTTGAACCTGGGTGTCGAACAATGACAGAGGTCGCCTTGAGCATGGTAAGAGAGGAAGGTTTTGCTTCTTTCTACTACGGCCTTGGTCCTTCTCTTATCGGAATAGCTCCATATATTGCAGTTAACTTTTGTGTTTTTGACTTACTAAAGAAGTCGTTGCCAGAGAAGTATCAAAAGAGAACTGAAACATCTCTAGTCACTGCCGTGCTTTCAGCATCTCTTGCCACACTTACATGCTATCCTCTGGACACAGTACGAAGACAGATGCAACTTAAGGGTACACCTTATAAGACAGTATTAGATGCCATTTCAGGTATTGTGGCACAAGATGGAGTTATTGGCTTGTACCGAGGATTTGTGCCCAATGCTTTAAAAAAACTACCAAACAGCAGCATCAGGCTTACAACATATGACATTGTCAAACGCCTGATTGCTGCTAGTGAGAAGGAGTTTCAAACAATTGCAGAGGAAAACCGCAACAAACTAAAGAAATGCCATAATCAATGA

Protein sequence

>MsG0480018666.01.T01

MTNSTNKTVATWHNIPNLTTTSNDVVSPNHLFNNSTFTFTDATTTTIPSKFATVSTSQTKPNNEFAPTPAQLLNHPIAVVALVPKDAALFLAGAVAGAAAKTVTAPLDRIKLLMQTHGVRIGQESAKKTIGFIEAISMIGKEEGIRGYWKGNLPQVIRVYLIVLFSSLLMKFIRLTANYLSRITCTKHCMFRYNYPLDVLRLRLAVEPGCRTMTEVALSMVREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLVTAVLSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVAQDGVIGLYRGFVPNALKKLPNSSIRLTTYDIVKRLIAASEKEFQTIAEENRNKLKKCHNQ*