Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043951.01.T01 | XP_003628200.1 | 89.677 | 155 | 16 | 0 | 1 | 155 | 1 | 155 | 5.00E-98 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043951.01.T01 | Q941R6 | 33.333 | 153 | 99 | 3 | 3 | 153 | 20 | 171 | 2.12E-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043951.01.T01 | G7L7T5 | 89.677 | 155 | 16 | 0 | 1 | 155 | 1 | 155 | 2.39e-98 | 289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048633.01 | MsG0880043951.01 | 0.817697 | 2.882950e-52 | 2.114457e-49 |
| MsG0080048701.01 | MsG0880043951.01 | 0.801366 | 9.314568e-49 | 4.440363e-46 |
| MsG0180000111.01 | MsG0880043951.01 | 0.828775 | 7.452844e-55 | 7.480280e-52 |
| MsG0180000373.01 | MsG0880043951.01 | 0.811461 | 6.920287e-51 | 4.286360e-48 |
| MsG0180002211.01 | MsG0880043951.01 | 0.814216 | 1.725042e-51 | 1.150491e-48 |
| MsG0880043948.01 | MsG0880043951.01 | 0.855029 | 8.299644e-62 | 1.890182e-58 |
| MsG0880043951.01 | MsG0880043983.01 | 0.803358 | 3.621256e-49 | 1.815942e-46 |
| MsG0180003360.01 | MsG0880043951.01 | 0.817379 | 3.400755e-52 | 2.472652e-49 |
| MsG0180003427.01 | MsG0880043951.01 | 0.829555 | 4.820786e-55 | 4.950623e-52 |
| MsG0180003485.01 | MsG0880043951.01 | 0.804484 | 2.113165e-49 | 1.090811e-46 |
| MsG0180003796.01 | MsG0880043951.01 | 0.815860 | 7.444597e-52 | 5.192224e-49 |
| MsG0180004661.01 | MsG0880043951.01 | 0.806758 | 7.042683e-50 | 3.853886e-47 |
| MsG0180005002.01 | MsG0880043951.01 | 0.834905 | 2.287700e-56 | 2.753078e-53 |
| MsG0280006311.01 | MsG0880043951.01 | 0.820896 | 5.383244e-53 | 4.314161e-50 |
| MsG0780040896.01 | MsG0880043951.01 | 0.826316 | 2.900380e-54 | 2.710626e-51 |
| MsG0780041063.01 | MsG0880043951.01 | 0.831642 | 1.487123e-55 | 1.623614e-52 |
| MsG0780041271.01 | MsG0880043951.01 | 0.840308 | 9.404989e-58 | 1.334156e-54 |
| MsG0880043637.01 | MsG0880043951.01 | 0.800067 | 1.714836e-48 | 7.909969e-46 |
| MsG0280010856.01 | MsG0880043951.01 | 0.818974 | 1.480979e-52 | 1.125266e-49 |
| MsG0380014132.01 | MsG0880043951.01 | 0.803535 | 3.327663e-49 | 1.676503e-46 |
| MsG0380014594.01 | MsG0880043951.01 | 0.830635 | 2.628050e-55 | 2.784902e-52 |
| MsG0380014754.01 | MsG0880043951.01 | 0.821618 | 3.669778e-53 | 3.000492e-50 |
| MsG0380014881.01 | MsG0880043951.01 | 0.830287 | 3.197366e-55 | 3.353897e-52 |
| MsG0680030763.01 | MsG0880043951.01 | 0.801106 | 1.052861e-48 | 4.986436e-46 |
| MsG0680035349.01 | MsG0880043951.01 | 0.800013 | 1.758944e-48 | 8.102064e-46 |
| MsG0480018918.01 | MsG0880043951.01 | 0.804327 | 2.278835e-49 | 1.171597e-46 |
| MsG0480019635.01 | MsG0880043951.01 | 0.847998 | 8.108544e-60 | 1.467023e-56 |
| MsG0480019699.01 | MsG0880043951.01 | 0.835566 | 1.557695e-56 | 1.912043e-53 |
| MsG0480020263.01 | MsG0880043951.01 | 0.813999 | 1.925741e-51 | 1.276837e-48 |
| MsG0480022331.01 | MsG0880043951.01 | 0.811727 | 6.058034e-51 | 3.778743e-48 |
| MsG0480023532.01 | MsG0880043951.01 | 0.836143 | 1.112093e-56 | 1.389169e-53 |
| MsG0580024388.01 | MsG0880043951.01 | 0.801561 | 8.495198e-49 | 4.069581e-46 |
| MsG0580025515.01 | MsG0880043951.01 | 0.835121 | 2.017997e-56 | 2.444121e-53 |
| MsG0380017819.01 | MsG0880043951.01 | 0.812731 | 3.658129e-51 | 2.343955e-48 |
| MsG0480018397.01 | MsG0880043951.01 | 0.817573 | 3.074448e-52 | 2.247223e-49 |
| MsG0580029298.01 | MsG0880043951.01 | 0.806419 | 8.303590e-50 | 4.504623e-47 |
| MsG0280008407.01 | MsG0880043951.01 | 0.816179 | 6.317869e-52 | 4.445211e-49 |
| MsG0280008862.01 | MsG0880043951.01 | 0.818938 | 1.509517e-52 | 1.145790e-49 |
| MsG0280010303.01 | MsG0880043951.01 | 0.832489 | 9.179582e-56 | 1.027593e-52 |
| MsG0780039878.01 | MsG0880043951.01 | 0.806791 | 6.927479e-50 | 3.794262e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043951.01.T01 | MTR_8g045490 | 89.677 | 155 | 16 | 0 | 1 | 155 | 1 | 155 | 6.05e-102 | 289 |
| MsG0880043951.01.T01 | MTR_8g045520 | 80.263 | 152 | 30 | 0 | 1 | 152 | 1 | 152 | 2.23e-89 | 258 |
| MsG0880043951.01.T01 | MTR_8g045400 | 76.821 | 151 | 34 | 1 | 1 | 151 | 1 | 150 | 3.57e-85 | 247 |
| MsG0880043951.01.T01 | MTR_8g045570 | 74.172 | 151 | 39 | 0 | 1 | 151 | 1 | 151 | 1.37e-83 | 243 |
| MsG0880043951.01.T01 | MTR_8g045695 | 75.497 | 151 | 36 | 1 | 1 | 151 | 1 | 150 | 1.50e-82 | 240 |
| MsG0880043951.01.T01 | MTR_8g045555 | 74.834 | 151 | 38 | 0 | 1 | 151 | 1 | 151 | 8.62e-81 | 236 |
| MsG0880043951.01.T01 | MTR_8g045300 | 70.395 | 152 | 45 | 0 | 1 | 152 | 1 | 152 | 1.30e-79 | 233 |
| MsG0880043951.01.T01 | MTR_8g045735 | 70.861 | 151 | 43 | 1 | 1 | 151 | 1 | 150 | 1.04e-77 | 228 |
| MsG0880043951.01.T01 | MTR_8g045665 | 70.861 | 151 | 43 | 1 | 1 | 151 | 1 | 150 | 5.24e-76 | 224 |
| MsG0880043951.01.T01 | MTR_8g045640 | 70.199 | 151 | 44 | 1 | 1 | 151 | 1 | 150 | 2.30e-75 | 222 |
| MsG0880043951.01.T01 | MTR_8g045560 | 68.874 | 151 | 46 | 1 | 1 | 151 | 1 | 150 | 1.35e-73 | 218 |
| MsG0880043951.01.T01 | MTR_1g030810 | 44.156 | 154 | 83 | 2 | 1 | 152 | 1 | 153 | 3.07e-40 | 133 |
| MsG0880043951.01.T01 | MTR_1g030820 | 39.610 | 154 | 90 | 2 | 1 | 152 | 1 | 153 | 1.23e-38 | 129 |
| MsG0880043951.01.T01 | MTR_1g030840 | 36.478 | 159 | 93 | 4 | 1 | 152 | 1 | 158 | 1.15e-26 | 99.0 |
| MsG0880043951.01.T01 | MTR_8g012550 | 33.108 | 148 | 96 | 3 | 6 | 152 | 8 | 153 | 1.52e-26 | 98.6 |
| MsG0880043951.01.T01 | MTR_1g031640 | 36.735 | 147 | 84 | 4 | 7 | 151 | 7 | 146 | 6.33e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043951.01.T01 | AT5G28010 | 35.294 | 153 | 96 | 3 | 3 | 153 | 15 | 166 | 2.33e-25 | 95.9 |
| MsG0880043951.01.T01 | AT5G28010 | 35.294 | 153 | 96 | 3 | 3 | 153 | 15 | 166 | 2.33e-25 | 95.9 |
| MsG0880043951.01.T01 | AT1G70840 | 33.333 | 153 | 99 | 3 | 3 | 153 | 20 | 171 | 2.17e-23 | 90.9 |
| MsG0880043951.01.T01 | AT1G70890 | 35.294 | 153 | 96 | 3 | 3 | 153 | 7 | 158 | 2.55e-23 | 90.5 |
| MsG0880043951.01.T01 | AT1G70830 | 33.125 | 160 | 104 | 3 | 3 | 160 | 22 | 180 | 3.99e-22 | 88.2 |
| MsG0880043951.01.T01 | AT1G70830 | 33.333 | 153 | 99 | 3 | 3 | 153 | 22 | 173 | 1.30e-21 | 86.3 |
| MsG0880043951.01.T01 | AT1G70830 | 33.333 | 153 | 99 | 3 | 3 | 153 | 22 | 173 | 7.07e-21 | 86.3 |
| MsG0880043951.01.T01 | AT5G28000 | 31.579 | 152 | 101 | 3 | 3 | 152 | 13 | 163 | 7.22e-21 | 84.0 |
| MsG0880043951.01.T01 | AT1G70830 | 33.333 | 153 | 99 | 3 | 3 | 153 | 22 | 173 | 1.77e-20 | 86.3 |
| MsG0880043951.01.T01 | AT1G70830 | 32.026 | 153 | 101 | 3 | 3 | 153 | 184 | 335 | 4.10e-19 | 82.8 |
| MsG0880043951.01.T01 | AT1G23120 | 30.921 | 152 | 100 | 3 | 1 | 152 | 1 | 147 | 2.04e-20 | 82.4 |
| MsG0880043951.01.T01 | AT1G23120 | 30.921 | 152 | 100 | 3 | 1 | 152 | 51 | 197 | 1.15e-19 | 82.0 |
| MsG0880043951.01.T01 | AT1G23130 | 30.464 | 151 | 103 | 2 | 3 | 152 | 10 | 159 | 1.43e-19 | 80.5 |
| MsG0880043951.01.T01 | AT1G70830 | 32.026 | 153 | 101 | 3 | 3 | 153 | 137 | 288 | 2.00e-19 | 82.8 |
| MsG0880043951.01.T01 | AT1G70870 | 43.750 | 96 | 53 | 1 | 56 | 151 | 44 | 138 | 2.95e-19 | 79.3 |
| MsG0880043951.01.T01 | AT1G70850 | 31.544 | 149 | 99 | 3 | 3 | 149 | 9 | 156 | 4.52e-19 | 81.3 |
| MsG0880043951.01.T01 | AT1G70850 | 31.544 | 149 | 99 | 3 | 3 | 149 | 9 | 156 | 1.10e-18 | 81.3 |
| MsG0880043951.01.T01 | AT1G70850 | 32.168 | 143 | 94 | 3 | 13 | 153 | 175 | 316 | 1.01e-17 | 78.6 |
| MsG0880043951.01.T01 | AT1G70850 | 31.544 | 149 | 99 | 3 | 3 | 149 | 9 | 156 | 1.10e-18 | 81.3 |
| MsG0880043951.01.T01 | AT1G70850 | 32.168 | 143 | 94 | 3 | 13 | 153 | 175 | 316 | 1.01e-17 | 78.6 |
| MsG0880043951.01.T01 | AT4G23670 | 32.895 | 152 | 99 | 3 | 1 | 151 | 1 | 150 | 2.25e-17 | 74.7 |
| MsG0880043951.01.T01 | AT1G70880 | 28.105 | 153 | 107 | 3 | 3 | 153 | 8 | 159 | 3.23e-17 | 74.7 |
| MsG0880043951.01.T01 | AT1G35260 | 29.655 | 145 | 98 | 3 | 7 | 149 | 6 | 148 | 3.49e-17 | 74.3 |
| MsG0880043951.01.T01 | AT1G35310 | 27.660 | 141 | 99 | 3 | 13 | 152 | 12 | 150 | 4.70e-15 | 68.6 |
| MsG0880043951.01.T01 | AT4G23680 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 5.87e-15 | 68.6 |
| MsG0880043951.01.T01 | AT1G24020 | 32.484 | 157 | 102 | 3 | 1 | 155 | 1 | 155 | 6.81e-15 | 68.2 |
| MsG0880043951.01.T01 | AT1G24020 | 32.484 | 157 | 102 | 3 | 1 | 155 | 1 | 155 | 6.81e-15 | 68.2 |
| MsG0880043951.01.T01 | AT1G14930 | 30.818 | 159 | 93 | 5 | 1 | 151 | 1 | 150 | 1.54e-14 | 67.4 |
| MsG0880043951.01.T01 | AT2G01520 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 1.65e-14 | 67.4 |
| MsG0880043951.01.T01 | AT4G14060 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 1.34e-13 | 64.7 |
| MsG0880043951.01.T01 | AT2G01530 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 5.53e-13 | 63.2 |
| MsG0880043951.01.T01 | AT1G30990 | 29.630 | 135 | 92 | 3 | 1 | 134 | 1 | 133 | 1.53e-11 | 59.3 |
| MsG0880043951.01.T01 | AT1G14940 | 28.000 | 150 | 105 | 3 | 1 | 149 | 1 | 148 | 5.52e-11 | 58.2 |
Find 35 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8:+33263506 | MsG0880043951.01.T01:CDS |
| AAAATCAATAAATGGATATT+CGG | 0.276254 | 8:+33263765 | MsG0880043951.01.T01:three_prime_UTR |
| ATGTGATGAAAATCAATAAA+TGG | 0.307681 | 8:+33263757 | MsG0880043951.01.T01:three_prime_UTR |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.312248 | 8:+33263441 | MsG0880043951.01.T01:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.315291 | 8:+33261944 | MsG0880043951.01.T01:CDS |
| ATCTTTCGTTTGTATGTGTC+AGG | 0.369367 | 8:+33263712 | MsG0880043951.01.T01:three_prime_UTR |
| AATGTAACAAATAAATAGTA+AGG | 0.391401 | 8:+33263591 | MsG0880043951.01.T01:exon |
| AAATCAATAAATGGATATTC+GGG | 0.399238 | 8:+33263766 | MsG0880043951.01.T01:three_prime_UTR |
| ATATTGTTGCATATGCATAT+TGG | 0.412178 | 8:+33263680 | MsG0880043951.01.T01:three_prime_UTR |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8:-33263503 | None:intergenic |
| TAGTAAGGGCTTATTGCATT+GGG | 0.434437 | 8:+33263606 | MsG0880043951.01.T01:three_prime_UTR |
| ACCATTTCTTAGAAGTAAAA+CGG | 0.440851 | 8:-33261914 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8:+33262097 | MsG0880043951.01.T01:CDS |
| ATAGTAAGGGCTTATTGCAT+TGG | 0.476377 | 8:+33263605 | MsG0880043951.01.T01:three_prime_UTR |
| AACTTCATGAAGGTGAAGAT+TGG | 0.478377 | 8:+33262056 | MsG0880043951.01.T01:CDS |
| CATATGCATATTGGCTTCTG+TGG | 0.494852 | 8:+33263689 | MsG0880043951.01.T01:three_prime_UTR |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8:+33263382 | MsG0880043951.01.T01:CDS |
| GAACAGATTGTAGAACTTGT+CGG | 0.501167 | 8:-33261981 | None:intergenic |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8:+33262072 | MsG0880043951.01.T01:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8:+33263496 | MsG0880043951.01.T01:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8:+33263488 | MsG0880043951.01.T01:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8:-33263500 | None:intergenic |
| TATGATGAACTCTTTCACAA+AGG | 0.552779 | 8:-33262030 | None:intergenic |
| AACACTTATAAGTTCTTCGG+TGG | 0.555536 | 8:+33263359 | MsG0880043951.01.T01:CDS |
| ATAATTCATAACAGATGGCA+AGG | 0.593174 | 8:+33263286 | MsG0880043951.01.T01:intron |
| GAAGTAATTGATAAGCGTGA+TGG | 0.599676 | 8:+33263422 | MsG0880043951.01.T01:CDS |
| CATCATACAAAACTTCATGA+AGG | 0.606616 | 8:+33262046 | MsG0880043951.01.T01:CDS |
| TATTGATGCTTATCTAGCCA+AGG | 0.607429 | 8:+33263544 | MsG0880043951.01.T01:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8:+33262083 | MsG0880043951.01.T01:CDS |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8:-33263499 | None:intergenic |
| ATGTAACAAATAAATAGTAA+GGG | 0.632491 | 8:+33263592 | MsG0880043951.01.T01:exon |
| AGATTGTAGAACTTGTCGGC+GGG | 0.646397 | 8:-33261977 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.646793 | 8:+33263469 | MsG0880043951.01.T01:CDS |
| TTCTAAGAAATGGTGCTCTG+TGG | 0.660259 | 8:+33261923 | MsG0880043951.01.T01:exon |
| CAGATTGTAGAACTTGTCGG+CGG | 0.688816 | 8:-33261978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATAATAAATATTTGA+AGG | - | Chr8:33262877-33262896 | None:intergenic | 10.0% |
| !!! | ATTCATAATTGTTTTTTTTT+TGG | - | Chr8:33262741-33262760 | None:intergenic | 10.0% |
| !!! | TTCATATTTTTTTTTTTGAA+TGG | - | Chr8:33262781-33262800 | None:intergenic | 10.0% |
| !! | AAAAATAATAGGTTATTTGT+AGG | + | Chr8:33263162-33263181 | MsG0880043951.01.T01:intron | 15.0% |
| !! | AAATGTTGATCATATTTAAT+TGG | + | Chr8:33262220-33262239 | MsG0880043951.01.T01:intron | 15.0% |
| !! | AATGTAACAAATAAATAGTA+AGG | + | Chr8:33263591-33263610 | MsG0880043951.01.T01:exon | 15.0% |
| !! | AGTAAAATAATAAGATGATT+TGG | - | Chr8:33262155-33262174 | None:intergenic | 15.0% |
| !! | ATGTAACAAATAAATAGTAA+GGG | + | Chr8:33263592-33263611 | MsG0880043951.01.T01:exon | 15.0% |
| !! | TTATTTGTAGGAAAAAAAAA+AGG | + | Chr8:33263174-33263193 | MsG0880043951.01.T01:intron | 15.0% |
| !!! | AATCATCTTATTATTTTACT+TGG | + | Chr8:33262155-33262174 | MsG0880043951.01.T01:intron | 15.0% |
| !! | AAAAACACTTATAAGTTCTT+CGG | + | Chr8:33263356-33263375 | MsG0880043951.01.T01:CDS | 20.0% |
| !! | ATGTGATGAAAATCAATAAA+TGG | + | Chr8:33263757-33263776 | MsG0880043951.01.T01:three_prime_UTR | 20.0% |
| !!! | AAATAATAAGATGATTTGGT+TGG | - | Chr8:33262151-33262170 | None:intergenic | 20.0% |
| !!! | AATTAGCAAGTTTTATGTTT+TGG | + | Chr8:33262447-33262466 | MsG0880043951.01.T01:intron | 20.0% |
| !!! | AATTAGTGTGATGTTTTTAA+TGG | + | Chr8:33263656-33263675 | MsG0880043951.01.T01:three_prime_UTR | 20.0% |
| !!! | CATAATTGTTTTTTTTTTGG+TGG | - | Chr8:33262738-33262757 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTTTTGTCTATGT+AGG | - | Chr8:33262390-33262409 | None:intergenic | 20.0% |
| !!! | TTTTATTTGAATGTTTGCTT+TGG | + | Chr8:33262303-33262322 | MsG0880043951.01.T01:intron | 20.0% |
| ! | AAATATTTGAAGGTAAACCA+CGG | - | Chr8:33262867-33262886 | None:intergenic | 25.0% |
| ! | AATCATATAAAGAATAACCG+TGG | + | Chr8:33262847-33262866 | MsG0880043951.01.T01:intron | 25.0% |
| ! | ACCATTTCTTAGAAGTAAAA+CGG | - | Chr8:33261917-33261936 | None:intergenic | 25.0% |
| ! | AGAGACATACAATAACTTTA+TGG | + | Chr8:33263067-33263086 | MsG0880043951.01.T01:intron | 25.0% |
| ! | ATATTGTTGCATATGCATAT+TGG | + | Chr8:33263680-33263699 | MsG0880043951.01.T01:three_prime_UTR | 25.0% |
| ! | CATAATATATGTAAGGTATG+AGG | + | Chr8:33262697-33262716 | MsG0880043951.01.T01:intron | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | Chr8:33262690-33262709 | MsG0880043951.01.T01:intron | 25.0% |
| ! | TCATTAACCTATTTGCTTTA+TGG | + | Chr8:33263118-33263137 | MsG0880043951.01.T01:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | Chr8:33263469-33263488 | MsG0880043951.01.T01:CDS | 25.0% |
| !!! | TTTTTTTTTGTCTATGTAGG+TGG | - | Chr8:33262387-33262406 | None:intergenic | 25.0% |
| AATAAAGAGAAGAAGAGAGA+AGG | + | Chr8:33262972-33262991 | MsG0880043951.01.T01:intron | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | + | Chr8:33263382-33263401 | MsG0880043951.01.T01:CDS | 30.0% | |
| AGTCATACTACTAGACTATT+AGG | - | Chr8:33263099-33263118 | None:intergenic | 30.0% | |
| ATAATTCATAACAGATGGCA+AGG | + | Chr8:33263286-33263305 | MsG0880043951.01.T01:intron | 30.0% | |
| CATCATACAAAACTTCATGA+AGG | + | Chr8:33262046-33262065 | MsG0880043951.01.T01:CDS | 30.0% | |
| CCATCATAATTCATAACAGA+TGG | + | Chr8:33263281-33263300 | MsG0880043951.01.T01:intron | 30.0% | |
| CCATCTGTTATGAATTATGA+TGG | - | Chr8:33263284-33263303 | None:intergenic | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | - | Chr8:33262033-33262052 | None:intergenic | 30.0% | |
| TGGATTTCCATAAAGCAAAT+AGG | - | Chr8:33263128-33263147 | None:intergenic | 30.0% | |
| TGTTATGAATTATGATGGCA+CGG | - | Chr8:33263279-33263298 | None:intergenic | 30.0% | |
| !! | TAGCAAGTTTTATGTTTTGG+TGG | + | Chr8:33262450-33262469 | MsG0880043951.01.T01:intron | 30.0% |
| !! | TCCGTTTTACTTCTAAGAAA+TGG | + | Chr8:33261913-33261932 | MsG0880043951.01.T01:exon | 30.0% |
| !!! | TTTTTTTTTGGTGGTGTCTA+GGG | - | Chr8:33262729-33262748 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGTGGTGTCT+AGG | - | Chr8:33262730-33262749 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | Chr8:33262097-33262116 | MsG0880043951.01.T01:CDS | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | - | Chr8:33263506-33263525 | None:intergenic | 35.0% | |
| AACACTTATAAGTTCTTCGG+TGG | + | Chr8:33263359-33263378 | MsG0880043951.01.T01:CDS | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | Chr8:33262056-33262075 | MsG0880043951.01.T01:CDS | 35.0% | |
| ATAGTAAGGGCTTATTGCAT+TGG | + | Chr8:33263605-33263624 | MsG0880043951.01.T01:three_prime_UTR | 35.0% | |
| ATCTTTCGTTTGTATGTGTC+AGG | + | Chr8:33263712-33263731 | MsG0880043951.01.T01:three_prime_UTR | 35.0% | |
| GAACAGATTGTAGAACTTGT+CGG | - | Chr8:33261984-33262003 | None:intergenic | 35.0% | |
| GAAGTAATTGATAAGCGTGA+TGG | + | Chr8:33263422-33263441 | MsG0880043951.01.T01:CDS | 35.0% | |
| GTTATGAATTATGATGGCAC+GGG | - | Chr8:33263278-33263297 | None:intergenic | 35.0% | |
| TAGTAAGGGCTTATTGCATT+GGG | + | Chr8:33263606-33263625 | MsG0880043951.01.T01:three_prime_UTR | 35.0% | |
| TATTGATGCTTATCTAGCCA+AGG | + | Chr8:33263544-33263563 | MsG0880043951.01.T01:CDS | 35.0% | |
| ! | AATGGCTACATGGAACATTT+TGG | + | Chr8:33263506-33263525 | MsG0880043951.01.T01:CDS | 35.0% |
| ! | ACTTGAAGCTATCTTTTCCT+TGG | - | Chr8:33263564-33263583 | None:intergenic | 35.0% |
| !!! | CAAGTTTTATGTTTTGGTGG+TGG | + | Chr8:33262453-33262472 | MsG0880043951.01.T01:intron | 35.0% |
| AAGGAGAGGAAGAGAGAATA+GGG | + | Chr8:33262991-33263010 | MsG0880043951.01.T01:intron | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | Chr8:33262072-33262091 | MsG0880043951.01.T01:CDS | 40.0% |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | + | Chr8:33261944-33261963 | MsG0880043951.01.T01:CDS | 40.0% |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | - | Chr8:33262495-33262514 | None:intergenic | 40.0% |
| ! | TTCTAAGAAATGGTGCTCTG+TGG | + | Chr8:33261923-33261942 | MsG0880043951.01.T01:exon | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | Chr8:33262083-33262102 | MsG0880043951.01.T01:CDS | 40.0% |
| !! | CATATGCATATTGGCTTCTG+TGG | + | Chr8:33263689-33263708 | MsG0880043951.01.T01:three_prime_UTR | 40.0% |
| !!! | TTTTATGTTTTGGTGGTGGC+CGG | + | Chr8:33262457-33262476 | MsG0880043951.01.T01:intron | 40.0% |
| AGAGAAGAAGAGAGAAGGAG+AGG | + | Chr8:33262977-33262996 | MsG0880043951.01.T01:intron | 45.0% | |
| AGATTGTAGAACTTGTCGGC+GGG | - | Chr8:33261980-33261999 | None:intergenic | 45.0% | |
| CAGATTGTAGAACTTGTCGG+CGG | - | Chr8:33261981-33262000 | None:intergenic | 45.0% | |
| GAAGGAGAGGAAGAGAGAAT+AGG | + | Chr8:33262990-33263009 | MsG0880043951.01.T01:intron | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | Chr8:33263488-33263507 | MsG0880043951.01.T01:CDS | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | - | Chr8:33262496-33262515 | None:intergenic | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | - | Chr8:33263502-33263521 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | - | Chr8:33263503-33263522 | None:intergenic | 45.0% | |
| !!! | TTTATGTTTTGGTGGTGGCC+GGG | + | Chr8:33262458-33262477 | MsG0880043951.01.T01:intron | 45.0% |
| !! | AAAAAAAATTATGAATTATT+TGG | + | Chr8:33262812-33262831 | MsG0880043951.01.T01:intron | 5.0% |
| !! | AAAAAAATTATGAATTATTT+GGG | + | Chr8:33262813-33262832 | MsG0880043951.01.T01:intron | 5.0% |
| !! | ATAATATTCATAAAAATAAT+AGG | + | Chr8:33263151-33263170 | MsG0880043951.01.T01:intron | 5.0% |
| !!! | ATTTTTATGAATATTATAAA+TGG | - | Chr8:33263148-33263167 | None:intergenic | 5.0% |
| ATGGCACTGCTGCTGCTAAA+TGG | + | Chr8:33263441-33263460 | MsG0880043951.01.T01:CDS | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | + | Chr8:33262497-33262516 | MsG0880043951.01.T01:intron | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | - | Chr8:33262500-33262519 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | Chr8:33263496-33263515 | MsG0880043951.01.T01:CDS | 50.0% | |
| TGAGCTTAGCTCAGCTGGTA+TGG | + | Chr8:33262668-33262687 | MsG0880043951.01.T01:intron | 50.0% | |
| !!! | TTATGTTTTGGTGGTGGCCG+GGG | + | Chr8:33262459-33262478 | MsG0880043951.01.T01:intron | 50.0% |
| CCAGCTGAGCTAAGCTCACA+AGG | - | Chr8:33262666-33262685 | None:intergenic | 55.0% | |
| CCTTGTGAGCTTAGCTCAGC+TGG | + | Chr8:33262663-33262682 | MsG0880043951.01.T01:intron | 55.0% | |
| GGTAGGGACAATGCAAACCC+CGG | - | Chr8:33262479-33262498 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 33261901 | 33263786 | 33261901 | ID=MsG0880043951.01;Name=MsG0880043951.01 |
| Chr8 | mRNA | 33261901 | 33263786 | 33261901 | ID=MsG0880043951.01.T01;Parent=MsG0880043951.01;Name=MsG0880043951.01.T01;_AED=0.48;_eAED=0.48;_QI=31|1|1|1|1|1|2|182|163 |
| Chr8 | exon | 33261901 | 33262118 | 33261901 | ID=MsG0880043951.01.T01:exon:9977;Parent=MsG0880043951.01.T01 |
| Chr8 | exon | 33263300 | 33263786 | 33263300 | ID=MsG0880043951.01.T01:exon:9978;Parent=MsG0880043951.01.T01 |
| Chr8 | five_prime_UTR | 33261901 | 33261931 | 33261901 | ID=MsG0880043951.01.T01:five_prime_utr;Parent=MsG0880043951.01.T01 |
| Chr8 | CDS | 33261932 | 33262118 | 33261932 | ID=MsG0880043951.01.T01:cds;Parent=MsG0880043951.01.T01 |
| Chr8 | CDS | 33263300 | 33263604 | 33263300 | ID=MsG0880043951.01.T01:cds;Parent=MsG0880043951.01.T01 |
| Chr8 | three_prime_UTR | 33263605 | 33263786 | 33263605 | ID=MsG0880043951.01.T01:three_prime_utr;Parent=MsG0880043951.01.T01 |
| Gene Sequence |
| Protein sequence |
