AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002211.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002211.01.T01 MTR_1g050448 96.026 151 6 0 107 257 225 375 3.14e-104 307
MsG0180002211.01.T01 MTR_1g050448 85.600 125 18 0 1 125 1 125 1.21e-73 229
MsG0180002211.01.T01 MTR_1g112210 72.393 163 41 3 97 257 209 369 2.46e-79 243
MsG0180002211.01.T01 MTR_1g112210 59.633 109 42 1 19 125 23 131 2.98e-40 142
MsG0180002211.01.T01 MTR_1g112210 72.393 163 41 3 97 257 222 382 3.25e-79 244
MsG0180002211.01.T01 MTR_1g112210 59.633 109 42 1 19 125 23 131 3.62e-40 142
MsG0180002211.01.T01 MTR_2g015720 44.444 171 81 3 92 257 197 358 6.41e-42 147
MsG0180002211.01.T01 MTR_2g015720 40.000 100 52 2 9 108 6 97 2.37e-15 75.1
MsG0180002211.01.T01 MTR_5g034810 43.429 175 79 5 92 257 189 352 1.23e-39 140
MsG0180002211.01.T01 MTR_5g034810 33.654 104 66 2 31 133 13 114 4.19e-14 71.2
MsG0180002211.01.T01 MTR_3g049330 43.353 173 82 5 92 257 187 350 2.26e-39 140
MsG0180002211.01.T01 MTR_3g049330 36.000 100 48 2 10 108 3 87 7.02e-15 73.6
MsG0180002211.01.T01 MTR_4g088030 40.351 171 88 2 92 257 189 350 5.64e-39 139
MsG0180002211.01.T01 MTR_4g088030 36.782 87 54 1 48 133 28 114 5.21e-13 68.2
MsG0180002211.01.T01 MTR_2g073510 40.698 172 88 2 92 257 190 353 6.07e-39 139
MsG0180002211.01.T01 MTR_2g073510 43.243 74 36 2 49 120 29 98 4.15e-14 71.2
MsG0180002211.01.T01 MTR_4g087730 41.520 171 86 2 92 257 201 362 2.76e-38 137
MsG0180002211.01.T01 MTR_7g093450 43.226 155 83 2 108 257 433 587 1.85e-37 139
MsG0180002211.01.T01 MTR_7g093450 52.308 65 30 1 48 111 243 307 2.63e-17 81.3
MsG0180002211.01.T01 MTR_4g079700 41.667 168 78 5 97 257 209 363 9.08e-37 133
MsG0180002211.01.T01 MTR_4g079700 39.286 112 52 5 14 119 9 110 2.05e-14 72.4
MsG0180002211.01.T01 MTR_5g071350 36.667 180 94 3 97 257 221 399 1.07e-36 134
MsG0180002211.01.T01 MTR_5g071350 50.769 65 29 2 45 108 52 114 6.48e-14 71.2
MsG0180002211.01.T01 MTR_2g091175 38.596 171 90 3 92 257 206 366 4.92e-36 131
MsG0180002211.01.T01 MTR_2g091175 53.968 63 28 1 47 108 44 106 3.33e-17 80.5
MsG0180002211.01.T01 MTR_4g121560 40.260 154 87 2 108 257 301 453 7.49e-36 133
MsG0180002211.01.T01 MTR_0136s0010 41.290 155 86 2 108 257 355 509 1.85e-35 132
MsG0180002211.01.T01 MTR_0136s0010 56.923 65 27 1 48 111 165 229 6.79e-18 83.2
MsG0180002211.01.T01 MTR_4g126950 38.182 165 97 2 97 257 283 446 3.31e-35 131
MsG0180002211.01.T01 MTR_4g126950 36.735 98 51 2 21 107 67 164 8.97e-15 73.9
MsG0180002211.01.T01 MTR_2g073500 44.512 164 71 5 97 257 199 345 3.63e-35 129
MsG0180002211.01.T01 MTR_2g073500 49.206 63 25 2 53 108 29 91 7.56e-13 67.8
MsG0180002211.01.T01 MTR_5g059400 41.026 156 86 3 108 257 360 515 3.91e-35 132
MsG0180002211.01.T01 MTR_5g059400 36.082 97 55 2 17 106 133 229 3.53e-14 72.0
MsG0180002211.01.T01 MTR_1g116130 41.026 156 86 3 108 257 360 515 3.91e-35 132
MsG0180002211.01.T01 MTR_1g116130 36.082 97 55 2 17 106 133 229 3.53e-14 72.0
MsG0180002211.01.T01 MTR_3g021090 39.412 170 83 3 92 253 187 344 1.04e-34 129
MsG0180002211.01.T01 MTR_3g021090 45.714 70 34 2 40 108 21 87 1.83e-13 69.7
MsG0180002211.01.T01 MTR_5g033800 40.000 155 88 2 108 257 329 483 2.70e-34 129
MsG0180002211.01.T01 MTR_5g033800 53.571 56 25 1 51 105 143 198 1.08e-13 70.5
MsG0180002211.01.T01 MTR_3g035830 38.953 172 85 3 92 255 187 346 5.85e-34 125
MsG0180002211.01.T01 MTR_3g035830 45.714 70 34 2 40 108 21 87 2.05e-13 69.3
MsG0180002211.01.T01 MTR_3g021060 38.788 165 84 3 97 255 208 361 1.72e-32 122
MsG0180002211.01.T01 MTR_3g021060 39.535 86 51 1 49 133 42 127 5.32e-14 71.2
MsG0180002211.01.T01 MTR_3g464570 36.416 173 97 3 97 257 101 272 2.26e-32 120
MsG0180002211.01.T01 MTR_8g069790 39.355 155 89 2 108 257 362 516 3.21e-32 124
MsG0180002211.01.T01 MTR_7g109550 40.268 149 78 3 109 253 322 463 6.47e-32 122
MsG0180002211.01.T01 MTR_7g109550 29.565 115 79 2 53 165 137 251 1.91e-13 69.7
MsG0180002211.01.T01 MTR_3g464570 36.994 173 95 4 97 257 206 376 2.05e-31 119
MsG0180002211.01.T01 MTR_4g016940 35.955 178 102 5 92 257 250 427 5.58e-31 119
MsG0180002211.01.T01 MTR_4g016940 43.333 60 32 2 51 108 84 143 2.78e-11 63.5
MsG0180002211.01.T01 MTR_1g111010 40.523 153 70 4 109 257 206 341 1.62e-30 116
MsG0180002211.01.T01 MTR_1g111010 48.387 62 29 2 50 108 29 90 7.39e-14 70.9
MsG0180002211.01.T01 MTR_1g058380 38.462 156 84 3 109 257 244 394 5.78e-28 110
MsG0180002211.01.T01 MTR_1g058380 32.121 165 87 6 1 143 1 162 1.08e-17 82.0
MsG0180002211.01.T01 MTR_5g082880 36.943 157 86 3 110 253 351 507 1.87e-26 107
MsG0180002211.01.T01 MTR_5g082880 49.153 59 28 2 51 107 163 221 7.88e-12 65.1
MsG0180002211.01.T01 MTR_4g014440 32.727 165 97 4 107 257 243 407 1.30e-25 104
MsG0180002211.01.T01 MTR_4g014440 44.444 63 33 2 48 108 57 119 3.10e-12 66.2
MsG0180002211.01.T01 MTR_7g070060 30.909 165 100 4 107 257 143 307 3.63e-24 99.0
MsG0180002211.01.T01 MTR_7g070060 30.909 165 100 4 107 257 245 409 8.69e-24 99.4
MsG0180002211.01.T01 MTR_7g070060 36.937 111 55 4 10 108 14 121 4.45e-14 71.6
MsG0180002211.01.T01 MTR_3g070900 36.306 157 87 4 110 253 289 445 3.28e-23 98.2
MsG0180002211.01.T01 MTR_3g070900 49.123 57 27 2 53 107 106 162 2.52e-12 66.6
MsG0180002211.01.T01 MTR_5g083260 36.806 144 80 3 125 257 281 424 4.33e-23 97.4
MsG0180002211.01.T01 MTR_5g083260 33.333 114 63 5 8 108 27 140 1.47e-14 73.2
MsG0180002211.01.T01 MTR_3g071650 33.333 159 95 3 110 257 272 430 4.66e-23 97.4
MsG0180002211.01.T01 MTR_3g071650 44.828 58 30 2 53 108 89 146 7.34e-12 65.1
MsG0180002211.01.T01 MTR_8g463790 35.948 153 86 4 117 257 257 409 3.42e-21 92.0
MsG0180002211.01.T01 MTR_8g463790 55.172 58 24 2 53 108 71 128 2.22e-14 72.4
MsG0180002211.01.T01 MTR_3g090120 35.333 150 86 3 109 257 320 459 3.45e-21 92.4
MsG0180002211.01.T01 MTR_3g090120 36.667 90 52 2 49 133 125 214 1.46e-11 64.3
MsG0180002211.01.T01 MTR_7g068920 34.831 178 104 5 92 257 244 421 3.72e-21 92.0
MsG0180002211.01.T01 MTR_7g068920 46.552 58 29 2 50 105 77 134 3.96e-12 65.9
MsG0180002211.01.T01 MTR_2g022560 29.474 190 106 4 91 257 253 437 9.18e-21 91.3
MsG0180002211.01.T01 MTR_2g022560 45.161 62 33 1 48 108 92 153 5.50e-13 68.6
MsG0180002211.01.T01 MTR_7g094750 35.032 157 92 3 109 257 278 432 2.61e-20 89.7
MsG0180002211.01.T01 MTR_7g094750 38.043 92 56 1 43 133 81 172 4.46e-16 77.4
MsG0180002211.01.T01 MTR_8g093530 32.143 168 90 6 97 257 266 416 2.68e-20 89.7
MsG0180002211.01.T01 MTR_8g093530 41.538 65 37 1 45 108 82 146 1.72e-11 63.9
MsG0180002211.01.T01 MTR_4g014430 31.210 157 97 3 112 257 290 446 4.27e-20 89.4
MsG0180002211.01.T01 MTR_4g014430 34.167 120 67 3 45 152 100 219 1.37e-14 73.2
MsG0180002211.01.T01 MTR_3g021150 36.522 115 63 2 120 226 1 113 7.21e-18 77.4
MsG0180002211.01.T01 MTR_7g094750 38.043 92 56 1 43 133 81 172 2.83e-16 77.4
MsG0180002211.01.T01 MTR_6g061710 48.571 70 35 1 40 108 154 223 4.73e-16 77.8
MsG0180002211.01.T01 MTR_7g070060 38.095 105 50 4 16 108 20 121 1.70e-14 72.0
MsG0180002211.01.T01 MTR_1g076690 56.140 57 24 1 53 108 223 279 5.07e-14 71.6
MsG0180002211.01.T01 MTR_5g033800 53.571 56 25 1 51 105 143 198 5.52e-14 71.2
MsG0180002211.01.T01 MTR_8g093870 30.952 168 99 6 97 257 315 472 6.38e-14 71.2
MsG0180002211.01.T01 MTR_4g125060 33.136 169 94 7 97 257 353 510 2.57e-12 66.6
MsG0180002211.01.T01 MTR_4g125060 33.136 169 94 7 97 257 382 539 2.76e-12 66.6
MsG0180002211.01.T01 MTR_4g125060 33.136 169 94 7 97 257 314 471 3.17e-12 66.2
MsG0180002211.01.T01 MTR_7g019140 43.750 64 35 1 49 111 75 138 6.62e-12 62.8
MsG0180002211.01.T01 MTR_5g035090 40.909 66 38 1 44 108 74 139 1.30e-11 64.3
MsG0180002211.01.T01 MTR_8g027900 29.907 107 72 2 3 108 163 267 1.73e-11 64.3
MsG0180002211.01.T01 MTR_3g109840 44.643 56 31 0 53 108 73 128 3.97e-11 62.8
MsG0180002211.01.T01 MTR_7g019120 48.276 58 29 1 49 105 75 132 5.37e-11 62.4
MsG0180002211.01.T01 MTR_8g104970 38.043 92 45 4 39 122 102 189 8.08e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002211.01.T01 AT3G54260 60.000 155 55 4 107 257 223 374 6.34e-58 189
MsG0180002211.01.T01 AT3G54260 44.444 126 66 2 1 125 1 123 3.79e-26 105
MsG0180002211.01.T01 AT2G31110 40.351 171 88 2 92 257 53 214 3.81e-38 133
MsG0180002211.01.T01 AT5G06700 45.161 155 80 2 108 257 440 594 3.92e-38 140
MsG0180002211.01.T01 AT5G06700 51.667 60 28 1 48 106 250 309 8.96e-14 71.2
MsG0180002211.01.T01 AT2G34070 39.157 166 86 2 97 257 94 249 2.24e-37 132
MsG0180002211.01.T01 AT1G29050 40.936 171 86 2 92 257 218 378 4.15e-37 134
MsG0180002211.01.T01 AT1G29050 39.744 78 37 2 41 108 40 117 3.92e-12 65.9
MsG0180002211.01.T01 AT2G31110 40.351 171 88 2 92 257 201 362 6.01e-37 134
MsG0180002211.01.T01 AT2G31110 38.739 111 61 3 13 120 3 109 1.02e-18 84.7
MsG0180002211.01.T01 AT5G20590 37.097 186 101 3 87 257 295 479 1.47e-36 135
MsG0180002211.01.T01 AT5G20590 52.381 63 28 2 48 108 136 198 3.67e-15 75.1
MsG0180002211.01.T01 AT2G34070 39.157 166 86 2 97 257 228 383 4.33e-36 132
MsG0180002211.01.T01 AT2G34070 40.625 64 37 1 46 108 58 121 1.41e-12 67.0
MsG0180002211.01.T01 AT5G49340 42.208 154 84 2 109 257 288 441 4.41e-35 130
MsG0180002211.01.T01 AT5G49340 42.857 77 41 2 35 108 80 156 2.11e-13 69.7
MsG0180002211.01.T01 AT2G42570 37.427 171 93 2 92 257 203 364 4.64e-34 126
MsG0180002211.01.T01 AT2G42570 50.820 61 29 1 49 108 43 103 7.86e-15 73.6
MsG0180002211.01.T01 AT5G58600 35.417 192 110 4 80 257 209 400 5.59e-34 127
MsG0180002211.01.T01 AT5G58600 44.776 67 32 3 44 108 60 123 8.19e-11 62.0
MsG0180002211.01.T01 AT1G78710 38.217 157 83 3 107 257 209 357 1.42e-33 125
MsG0180002211.01.T01 AT3G12060 41.935 155 85 2 108 257 381 535 1.76e-33 127
MsG0180002211.01.T01 AT3G12060 53.333 60 27 1 48 106 191 250 9.39e-14 70.9
MsG0180002211.01.T01 AT3G14850 39.881 168 88 3 92 253 87 247 1.89e-33 122
MsG0180002211.01.T01 AT3G14850 39.881 168 88 3 92 253 190 350 2.10e-32 122
MsG0180002211.01.T01 AT3G14850 43.548 62 34 1 48 108 29 90 1.32e-13 70.1
MsG0180002211.01.T01 AT2G30900 40.881 159 77 4 107 257 216 365 3.24e-32 121
MsG0180002211.01.T01 AT2G30900 41.509 106 58 3 51 152 41 146 9.36e-18 82.0
MsG0180002211.01.T01 AT1G60790 37.821 156 91 3 108 257 377 532 7.86e-32 122
MsG0180002211.01.T01 AT1G60790 48.438 64 30 2 46 106 183 246 1.80e-12 67.0
MsG0180002211.01.T01 AT3G62390 38.710 155 77 4 108 253 322 467 1.37e-29 116
MsG0180002211.01.T01 AT3G62390 28.859 149 98 3 23 163 102 250 2.10e-14 72.8
MsG0180002211.01.T01 AT2G30010 37.430 179 90 4 97 257 222 396 6.03e-28 110
MsG0180002211.01.T01 AT2G30010 33.028 109 63 3 35 133 31 139 1.73e-11 63.9
MsG0180002211.01.T01 AT5G01360 36.196 163 92 3 107 257 216 378 6.86e-28 110
MsG0180002211.01.T01 AT5G01360 37.736 106 62 3 51 152 34 139 3.42e-14 72.0
MsG0180002211.01.T01 AT2G30010 37.430 179 90 4 97 257 265 439 1.09e-27 110
MsG0180002211.01.T01 AT2G30010 33.028 109 63 3 35 133 74 182 1.44e-11 64.3
MsG0180002211.01.T01 AT1G78710 28.571 308 132 12 23 257 5 297 1.22e-27 108
MsG0180002211.01.T01 AT5G01360 36.196 163 92 3 107 257 272 434 1.39e-27 110
MsG0180002211.01.T01 AT5G01360 37.736 106 62 3 51 152 90 195 3.01e-14 72.4
MsG0180002211.01.T01 AT3G11570 37.342 158 83 5 109 257 269 419 4.55e-27 108
MsG0180002211.01.T01 AT3G11570 28.916 166 93 6 8 153 37 197 1.12e-11 64.7
MsG0180002211.01.T01 AT1G48880 37.584 149 82 3 109 257 302 439 5.52e-26 105
MsG0180002211.01.T01 AT1G48880 43.860 57 31 1 53 108 115 171 8.76e-12 65.1
MsG0180002211.01.T01 AT5G06230 40.373 161 74 6 109 257 214 364 1.04e-25 104
MsG0180002211.01.T01 AT5G06230 40.373 161 74 6 109 257 255 405 1.32e-25 104
MsG0180002211.01.T01 AT2G40160 32.768 177 105 4 95 257 247 423 3.54e-25 103
MsG0180002211.01.T01 AT2G40160 53.448 58 25 2 53 108 77 134 4.84e-14 71.6
MsG0180002211.01.T01 AT2G40160 32.203 177 106 4 95 257 247 423 9.41e-25 102
MsG0180002211.01.T01 AT2G40160 53.448 58 25 2 53 108 77 134 6.06e-14 71.2
MsG0180002211.01.T01 AT3G06080 37.107 159 87 4 109 257 290 445 9.27e-24 99.8
MsG0180002211.01.T01 AT3G06080 36.782 87 54 1 48 133 98 184 2.58e-11 63.5
MsG0180002211.01.T01 AT2G38320 30.303 165 101 4 107 257 157 321 2.17e-23 97.1
MsG0180002211.01.T01 AT2G38320 30.303 165 101 4 107 257 240 404 3.90e-23 97.4
MsG0180002211.01.T01 AT2G38320 36.364 77 47 2 37 111 43 119 1.29e-11 64.3
MsG0180002211.01.T01 AT3G11030 34.356 163 89 4 110 257 289 448 1.78e-22 95.9
MsG0180002211.01.T01 AT3G11030 46.552 58 29 2 53 108 106 163 9.97e-12 64.7
MsG0180002211.01.T01 AT1G73140 34.641 153 88 4 117 257 253 405 4.24e-21 92.0
MsG0180002211.01.T01 AT1G73140 49.315 73 34 3 53 123 67 138 3.77e-15 74.7
MsG0180002211.01.T01 AT5G19160 34.146 164 88 5 109 257 286 444 7.11e-21 91.7
MsG0180002211.01.T01 AT5G19160 29.630 162 101 3 32 183 81 239 1.09e-14 73.6
MsG0180002211.01.T01 AT2G40320 36.111 144 81 3 125 257 279 422 9.92e-21 90.9
MsG0180002211.01.T01 AT2G40320 36.441 118 52 6 8 108 27 138 2.84e-14 72.4
MsG0180002211.01.T01 AT3G55990 31.847 157 94 3 110 253 323 479 1.25e-20 90.9
MsG0180002211.01.T01 AT3G55990 45.763 59 30 2 51 107 138 196 1.54e-12 67.4
MsG0180002211.01.T01 AT5G01620 31.288 163 99 4 106 257 297 457 1.89e-20 90.5
MsG0180002211.01.T01 AT5G01620 32.061 131 75 4 35 152 101 230 1.09e-13 70.5
MsG0180002211.01.T01 AT5G01620 31.288 163 99 4 106 257 289 449 2.07e-20 90.1
MsG0180002211.01.T01 AT5G01620 32.061 131 75 4 35 152 93 222 1.19e-13 70.5
MsG0180002211.01.T01 AT5G01620 31.288 163 99 4 106 257 289 449 2.07e-20 90.1
MsG0180002211.01.T01 AT5G01620 32.061 131 75 4 35 152 93 222 1.19e-13 70.5
MsG0180002211.01.T01 AT2G40150 30.061 163 95 3 110 253 254 416 9.63e-20 88.2
MsG0180002211.01.T01 AT2G40150 44.068 59 31 2 52 108 70 128 4.09e-12 65.9
MsG0180002211.01.T01 AT2G31110 38.739 111 61 3 13 120 3 109 1.51e-19 85.9
MsG0180002211.01.T01 AT2G31110 44.262 61 34 0 92 152 201 261 8.13e-13 67.0
MsG0180002211.01.T01 AT2G30900 41.509 106 58 3 51 152 41 146 4.84e-18 81.6
MsG0180002211.01.T01 AT4G25360 47.368 76 36 2 37 111 162 234 2.27e-15 75.9
MsG0180002211.01.T01 AT4G25360 47.368 76 36 2 37 111 162 234 2.27e-15 75.9
MsG0180002211.01.T01 AT5G20590 52.381 63 28 2 48 108 136 198 2.29e-15 75.1
MsG0180002211.01.T01 AT5G19160 29.630 162 101 3 32 183 81 239 7.45e-15 73.6
MsG0180002211.01.T01 AT3G62390 28.859 149 98 3 23 163 102 250 1.43e-14 73.2
MsG0180002211.01.T01 AT2G40160 53.448 58 25 2 53 108 77 134 3.12e-14 71.6
MsG0180002211.01.T01 AT5G51640 47.297 74 36 2 39 111 126 197 4.42e-14 72.0
MsG0180002211.01.T01 AT1G70230 49.123 57 28 1 53 108 79 135 1.99e-11 63.9
MsG0180002211.01.T01 AT3G06080 45.161 62 33 1 48 108 98 159 2.05e-11 63.5
MsG0180002211.01.T01 AT5G58600 44.776 67 32 3 44 108 60 123 4.27e-11 62.4
MsG0180002211.01.T01 AT1G01430 36.986 73 44 2 37 108 84 155 8.34e-11 62.0

Find 93 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTGGTGTGCCTGATATT+TGG 0.189016 1:-34932677 MsG0180002211.01.T01:CDS
TGCTAGATTCTCTGTTGTTT+TGG 0.198961 1:+34935572 None:intergenic
CTATTCTTTGTTTCTCATCT+TGG 0.240185 1:+34932730 None:intergenic
CCACTGCACATTATCTCTTC+TGG 0.264239 1:-34935647 MsG0180002211.01.T01:CDS
AAAATCATACTTATCTTATA+TGG 0.266481 1:+34932501 None:intergenic
CATCAAATATTGTCTTAAAA+AGG 0.270453 1:-34932185 MsG0180002211.01.T01:three_prime_UTR
CTTATGGTTGCTTATCAAAA+AGG 0.301948 1:-34933267 MsG0180002211.01.T01:CDS
GCTGAAGAAAATGAGATTTC+CGG 0.315862 1:-34932829 MsG0180002211.01.T01:CDS
GTTACAATGCTGCCAACTTT+AGG 0.320362 1:+34932523 None:intergenic
GGTTCAATACCTCCTTTGTT+TGG 0.340933 1:-34932292 MsG0180002211.01.T01:three_prime_UTR
ATTCCTCTGATTGCAGTCAT+TGG 0.349039 1:-34932704 MsG0180002211.01.T01:CDS
CTCTTCTGTGTAGGTGGAGG+GGG 0.358685 1:-34932264 MsG0180002211.01.T01:three_prime_UTR
TAGAATTTAATATCGTAATT+AGG 0.362576 1:-34932615 MsG0180002211.01.T01:three_prime_UTR
AACATCTCATTCCAAATATC+AGG 0.370214 1:+34932666 None:intergenic
CCACTTCCACTTCTCATAAT+CGG 0.372276 1:+34935432 None:intergenic
TGGACAATGTTAACATCATC+AGG 0.381677 1:+34935592 None:intergenic
GCATGTCACCTAGGCATAAC+AGG 0.386311 1:-34933176 MsG0180002211.01.T01:intron
GCAGAAAGTAGTGCCAGTTT+TGG 0.387798 1:-34932313 MsG0180002211.01.T01:three_prime_UTR
CATGCTTCTGAAAATGACTT+TGG 0.398420 1:+34933194 None:intergenic
AGGAGGTATTGAACCAAAAC+TGG 0.405538 1:+34932300 None:intergenic
CACTTCTCATAATCGGAATC+TGG 0.405623 1:+34935439 None:intergenic
TGCAGTCATTGGTGCCTCCC+TGG 0.417455 1:-34932693 MsG0180002211.01.T01:CDS
AAAGAAAGCAAATGAGTCAT+AGG 0.431973 1:+34935691 None:intergenic
TCATTGTCGTAATATCTTGC+AGG 0.436722 1:+34932802 None:intergenic
TGGACCCACAAGATGATGTT+GGG 0.437455 1:-34935627 MsG0180002211.01.T01:CDS
GAACTCTTCTGTGTAGGTGG+AGG 0.441370 1:-34932267 MsG0180002211.01.T01:three_prime_UTR
TGGAGCACTACTAAAGGTTC+AGG 0.445699 1:+34932858 None:intergenic
TCAATACCTCCTTTGTTTGG+TGG 0.448146 1:-34932289 MsG0180002211.01.T01:three_prime_UTR
GCAGTTACTTGTCAAAAGAA+TGG 0.450896 1:-34935466 MsG0180002211.01.T01:CDS
AACTCTTCTGTGTAGGTGGA+GGG 0.455050 1:-34932266 MsG0180002211.01.T01:three_prime_UTR
ATGGACATCCTTCAGTGTAT+AGG 0.463306 1:-34932764 MsG0180002211.01.T01:CDS
GTAACTGCAGTACTAAGATA+AGG 0.467342 1:+34935481 None:intergenic
TTCCAAATATCAGGCACACC+AGG 0.469582 1:+34932675 None:intergenic
GTTCAGGAGCATGTTGTTGA+AGG 0.476187 1:+34932874 None:intergenic
CAAGATGAGAAACAAAGAAT+AGG 0.477046 1:-34932729 MsG0180002211.01.T01:CDS
ACTCTTCTGTGTAGGTGGAG+GGG 0.477928 1:-34932265 MsG0180002211.01.T01:three_prime_UTR
CTTGGATTCTGCAACTTGGT+TGG 0.480932 1:-34932370 MsG0180002211.01.T01:three_prime_UTR
TTGACTAACAGTTGACTAAG+AGG 0.482312 1:+34932561 None:intergenic
GTACTAAGATAAGGGCAGTT+AGG 0.483942 1:+34935490 None:intergenic
CAGTTACTTGTCAAAAGAAT+GGG 0.497842 1:-34935465 MsG0180002211.01.T01:CDS
TTGGTGGAACTCTTCTGTGT+AGG 0.501360 1:-34932273 MsG0180002211.01.T01:three_prime_UTR
CTGGACCCACAAGATGATGT+TGG 0.501831 1:-34935628 MsG0180002211.01.T01:CDS
GTATCTTGGATTCTGCAACT+TGG 0.509061 1:-34932374 MsG0180002211.01.T01:three_prime_UTR
TGTTGCCATGGAAGGAGCTA+AGG 0.511406 1:+34935714 None:intergenic
TAACTGCAGTACTAAGATAA+GGG 0.511515 1:+34935482 None:intergenic
GTAATATCTTGCAGGTATAC+CGG 0.515454 1:+34932810 None:intergenic
GAGGTGTCAAAGCCGCAGTC+TGG 0.518279 1:-34932402 MsG0180002211.01.T01:three_prime_UTR
TTGGCGTTCTGCTGTGGTGG+TGG 0.525232 1:-34932351 MsG0180002211.01.T01:three_prime_UTR
TCTGAGTACATGGGCAAGGT+GGG 0.533311 1:-34933244 MsG0180002211.01.T01:CDS
GAAACCCAACATCATCTTGT+GGG 0.534722 1:+34935623 None:intergenic
CCGATTATGAGAAGTGGAAG+TGG 0.536824 1:-34935432 MsG0180002211.01.T01:CDS
GTGGAACTCTTCTGTGTAGG+TGG 0.536904 1:-34932270 MsG0180002211.01.T01:three_prime_UTR
GAGTACATGGGCAAGGTGGG+TGG 0.558934 1:-34933241 MsG0180002211.01.T01:CDS
ACTTGGTTGGCGTTCTGCTG+TGG 0.560360 1:-34932357 MsG0180002211.01.T01:three_prime_UTR
AACTGTTAGTCAACATGTAA+CGG 0.565143 1:-34932551 MsG0180002211.01.T01:three_prime_UTR
ACTCCTTGGAGCACTACTAA+AGG 0.565747 1:+34932852 None:intergenic
GTCTGAGTACATGGGCAAGG+TGG 0.566507 1:-34933245 MsG0180002211.01.T01:CDS
TGGTTGGCGTTCTGCTGTGG+TGG 0.568056 1:-34932354 MsG0180002211.01.T01:three_prime_UTR
ATATAGTACCTGTTATGCCT+AGG 0.573860 1:+34933168 None:intergenic
GTCATAGGTGTTGCCATGGA+AGG 0.573884 1:+34935706 None:intergenic
ATGAGTCATAGGTGTTGCCA+TGG 0.585443 1:+34935702 None:intergenic
ATGACTGCCTTACGCAGAGA+TGG 0.588976 1:-34932783 MsG0180002211.01.T01:CDS
CACTCCCTTAGCTCCTTCCA+TGG 0.598271 1:-34935719 MsG0180002211.01.T01:exon
CAAGTGGTTGTTCTATCCCA+AGG 0.598345 1:-34935405 MsG0180002211.01.T01:intron
GTAACGGAAGGACCTAAAGT+TGG 0.598411 1:-34932535 MsG0180002211.01.T01:three_prime_UTR
CTTGCCTTCCTATACACTGA+AGG 0.599517 1:+34932756 None:intergenic
CTTGGGATAGAACAACCACT+TGG 0.601949 1:+34935406 None:intergenic
GTTGCCATGGAAGGAGCTAA+GGG 0.603277 1:+34935715 None:intergenic
AATGACTGCAATCAGAGGAA+TGG 0.604666 1:+34932706 None:intergenic
AGAAACCCAACATCATCTTG+TGG 0.610318 1:+34935622 None:intergenic
AGGATGTCCATCTCTGCGTA+AGG 0.610897 1:+34932776 None:intergenic
CAGATTCCGATTATGAGAAG+TGG 0.621301 1:-34935438 MsG0180002211.01.T01:CDS
AACTGATAATAGACTCACAT+GGG 0.624050 1:+34932218 None:intergenic
GTTCTGCTGTGGTGGTGGTG+TGG 0.624388 1:-34932346 MsG0180002211.01.T01:three_prime_UTR
TCCAAATATCAGGCACACCA+GGG 0.626960 1:+34932676 None:intergenic
GCACCAATGACTGCAATCAG+AGG 0.627161 1:+34932701 None:intergenic
GAACCTTTAGTAGTGCTCCA+AGG 0.631877 1:-34932855 MsG0180002211.01.T01:CDS
ATACAGGTGGGATTACTACA+AGG 0.634100 1:-34933319 MsG0180002211.01.T01:intron
GGGCAGTTAGGATCATAAAG+AGG 0.636819 1:+34935502 None:intergenic
AAGGTCTGAGTACATGGGCA+AGG 0.643601 1:-34933248 MsG0180002211.01.T01:CDS
AGGTGGGATTACTACAAGGA+GGG 0.648410 1:-34933315 MsG0180002211.01.T01:CDS
AGAAGAGTTCCACCAAACAA+AGG 0.651738 1:+34932280 None:intergenic
CCAGAAGAGATAATGTGCAG+TGG 0.657294 1:+34935647 None:intergenic
TTACTTGTCAAAAGAATGGG+AGG 0.658568 1:-34935462 MsG0180002211.01.T01:CDS
ACATCCTTCAGTGTATAGGA+AGG 0.659861 1:-34932760 MsG0180002211.01.T01:CDS
AGATGAACGTGAAATCAACA+TGG 0.663304 1:-34932450 MsG0180002211.01.T01:three_prime_UTR
GTTAGTCAACATGTAACGGA+AGG 0.664513 1:-34932547 MsG0180002211.01.T01:three_prime_UTR
AGAGTTCCACCAAACAAAGG+AGG 0.691043 1:+34932283 None:intergenic
CAGGTGGGATTACTACAAGG+AGG 0.703135 1:-34933316 MsG0180002211.01.T01:CDS
AAACTGATAATAGACTCACA+TGG 0.704350 1:+34932217 None:intergenic
TGAACGTGAAATCAACATGG+AGG 0.717564 1:-34932447 MsG0180002211.01.T01:three_prime_UTR
AAATATCAGGCACACCAGGG+AGG 0.749580 1:+34932679 None:intergenic
AAGTGGAAGTGGAAGCCAAG+TGG 0.762111 1:-34935421 MsG0180002211.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATATAAATTTTATCTA+AGG - Chr1:34932665-34932684 MsG0180002211.01.T01:CDS 10.0%
!!! CTTAGATAAAATTTATATTT+TGG + Chr1:34932667-34932686 None:intergenic 10.0%
!!! TTTTTTTTATAATCTTTAAC+AGG - Chr1:34932746-34932765 MsG0180002211.01.T01:CDS 10.0%
!! AAAATCATACTTATCTTATA+TGG + Chr1:34935384-34935403 None:intergenic 15.0%
!! AGTCCTTAAAATAAATAAAA+TGG + Chr1:34933633-34933652 None:intergenic 15.0%
!! CATTTACTTAAATACAAATT+TGG + Chr1:34933715-34933734 None:intergenic 15.0%
!! CTTAAAATAAATAAAATGGA+AGG + Chr1:34933629-34933648 None:intergenic 15.0%
!! TAGAATTTAATATCGTAATT+AGG - Chr1:34935267-34935286 MsG0180002211.01.T01:intron 15.0%
!!! AACTTTGTTTATCAATTAAA+TGG + Chr1:34932812-34932831 None:intergenic 15.0%
!!! AGTATATTCTAGATTTTTTA+TGG - Chr1:34933100-34933119 MsG0180002211.01.T01:intron 15.0%
!!! CTAATATACTTTTTGTAATT+AGG - Chr1:34935297-34935316 MsG0180002211.01.T01:intron 15.0%
!!! CTCAAATTTTAATTTAATGA+TGG + Chr1:34932605-34932624 None:intergenic 15.0%
!!! CTTCCATTTTATTTATTTTA+AGG - Chr1:34933627-34933646 MsG0180002211.01.T01:intron 15.0%
!!! GTATATTCTAGATTTTTTAT+GGG - Chr1:34933101-34933120 MsG0180002211.01.T01:intron 15.0%
!! AAACTATCTTAGAAAACTTA+TGG - Chr1:34934423-34934442 MsG0180002211.01.T01:intron 20.0%
!! AACTATCTTAGAAAACTTAT+GGG - Chr1:34934424-34934443 MsG0180002211.01.T01:intron 20.0%
!! AGATTTATCATTCAAATTTG+TGG - Chr1:34933134-34933153 MsG0180002211.01.T01:intron 20.0%
!! CATCAAATATTGTCTTAAAA+AGG - Chr1:34935697-34935716 MsG0180002211.01.T01:CDS 20.0%
!! TGATTTCCGATAAAATATTA+TGG + Chr1:34934839-34934858 None:intergenic 20.0%
!!! AAAATGACTTTGGTTTTTTT+AGG + Chr1:34934681-34934700 None:intergenic 20.0%
!!! AAATGACTTTGGTTTTTTTA+GGG + Chr1:34934680-34934699 None:intergenic 20.0%
!!! ATGACACCATAATATTTTAT+CGG - Chr1:34934830-34934849 MsG0180002211.01.T01:intron 20.0%
!!! ATTGAGTTCTAAAAAAAACA+TGG - Chr1:34933025-34933044 MsG0180002211.01.T01:intron 20.0%
!!! TACAAAAAGTATATTAGTTC+AGG + Chr1:34935294-34935313 None:intergenic 20.0%
!!! TTGTGTTATTGTAATTTGTA+CGG - Chr1:34933314-34933333 MsG0180002211.01.T01:CDS 20.0%
!!! TTTGATAAACTTTCTAAAAG+AGG - Chr1:34934486-34934505 MsG0180002211.01.T01:intron 20.0%
!!! TTTTTTTAGAACTCAATATC+CGG + Chr1:34933022-34933041 None:intergenic 20.0%
! AAAAAGGAGATATATTTGTC+TGG - Chr1:34935713-34935732 MsG0180002211.01.T01:exon 25.0%
! AAATAAGAGAGTCTTACATT+TGG - Chr1:34934112-34934131 MsG0180002211.01.T01:intron 25.0%
! AATGCCAAAAACAAAATCAT+AGG + Chr1:34934911-34934930 None:intergenic 25.0%
! AGACATCAATTGAATTTCTT+TGG - Chr1:34934054-34934073 MsG0180002211.01.T01:intron 25.0%
! AGGATTTCATTAGAAAAAGT+TGG - Chr1:34935455-34935474 MsG0180002211.01.T01:CDS 25.0%
! ATCCCTAAAATTGTAAATGT+TGG - Chr1:34933390-34933409 MsG0180002211.01.T01:intron 25.0%
! ATTCAATAATGAGAAATCAG+TGG - Chr1:34933859-34933878 MsG0180002211.01.T01:intron 25.0%
! ATTTCATTAGAAAAAGTTGG+TGG - Chr1:34935458-34935477 MsG0180002211.01.T01:CDS 25.0%
! CAAAGTTTACTAATCAAACA+TGG - Chr1:34932825-34932844 MsG0180002211.01.T01:CDS 25.0%
! GACATCAATTGAATTTCTTT+GGG - Chr1:34934055-34934074 MsG0180002211.01.T01:intron 25.0%
! GTAAATGAATTTCAACACTT+TGG - Chr1:34933728-34933747 MsG0180002211.01.T01:intron 25.0%
! GTGTATAGAAGAAAACAAAA+AGG + Chr1:34932519-34932538 None:intergenic 25.0%
! GTTCTTGAAATTGTAAATGT+CGG + Chr1:34933693-34933712 None:intergenic 25.0%
! TATAGAAGAAAACAAAAAGG+TGG + Chr1:34932516-34932535 None:intergenic 25.0%
! TTCAATAATGAGAAATCAGT+GGG - Chr1:34933860-34933879 MsG0180002211.01.T01:intron 25.0%
! TTTATCAATTAAATGGATGC+AGG + Chr1:34932805-34932824 None:intergenic 25.0%
!! AAGAATCCACAAATATTTTC+AGG + Chr1:34933557-34933576 None:intergenic 25.0%
!! ATTTTGCCTGAAAATATTTG+TGG - Chr1:34933548-34933567 MsG0180002211.01.T01:intron 25.0%
!! CAAGAAAGAAGCATATAAAT+GGG + Chr1:34934539-34934558 None:intergenic 25.0%
!! GACAAAGATAAACAAGTTTT+AGG + Chr1:34934753-34934772 None:intergenic 25.0%
!! GACCAACATTTACAATTTTA+GGG + Chr1:34933395-34933414 None:intergenic 25.0%
!! GTGGTGTCAATAATTTATAA+AGG + Chr1:34934012-34934031 None:intergenic 25.0%
!! TATTGTAATTTGTACGGATA+TGG - Chr1:34933320-34933339 MsG0180002211.01.T01:intron 25.0%
!! TCAAGAAAGAAGCATATAAA+TGG + Chr1:34934540-34934559 None:intergenic 25.0%
!! TGACCAACATTTACAATTTT+AGG + Chr1:34933396-34933415 None:intergenic 25.0%
!! TTTGTGGATTCTTTTTAATG+TGG - Chr1:34933564-34933583 MsG0180002211.01.T01:intron 25.0%
!!! ACAAATATTTTCAGGCAAAA+TGG + Chr1:34933549-34933568 None:intergenic 25.0%
!!! AGTTCTAAAAAAAACATGGT+TGG - Chr1:34933029-34933048 MsG0180002211.01.T01:intron 25.0%
AAACTGATAATAGACTCACA+TGG + Chr1:34935668-34935687 None:intergenic 30.0%
AAAGAAAGCAAATGAGTCAT+AGG + Chr1:34932194-34932213 None:intergenic 30.0%
AACATCTCATTCCAAATATC+AGG + Chr1:34935219-34935238 None:intergenic 30.0%
AACTGATAATAGACTCACAT+GGG + Chr1:34935667-34935686 None:intergenic 30.0%
AACTGTTAGTCAACATGTAA+CGG - Chr1:34935331-34935350 MsG0180002211.01.T01:intron 30.0%
AAGTTATGCATATAGGAGAT+GGG + Chr1:34933279-34933298 None:intergenic 30.0%
AATAAGCCAAAATCAGCTTA+TGG - Chr1:34934447-34934466 MsG0180002211.01.T01:intron 30.0%
AATACCAACTGGTAGAAAAA+GGG - Chr1:34933911-34933930 MsG0180002211.01.T01:intron 30.0%
AATGGAATGATATGAAGAGA+AGG + Chr1:34934264-34934283 None:intergenic 30.0%
ACTATGGAAGTTATGCATAT+AGG + Chr1:34933286-34933305 None:intergenic 30.0%
AGTCTCCAAATTTCATCAAT+AGG - Chr1:34933420-34933439 MsG0180002211.01.T01:intron 30.0%
AGTTGCCTATTGATGAAATT+TGG + Chr1:34933428-34933447 None:intergenic 30.0%
ATGTCTTCATTACCATTGAA+TGG + Chr1:34933965-34933984 None:intergenic 30.0%
CAAGATGAGAAACAAAGAAT+AGG - Chr1:34935153-34935172 MsG0180002211.01.T01:intron 30.0%
CAGTTACTTGTCAAAAGAAT+GGG - Chr1:34932417-34932436 MsG0180002211.01.T01:three_prime_UTR 30.0%
CTTACATTTGGATTTGATTG+AGG - Chr1:34934124-34934143 MsG0180002211.01.T01:intron 30.0%
CTTATGGTTGCTTATCAAAA+AGG - Chr1:34934615-34934634 MsG0180002211.01.T01:intron 30.0%
GATCAAAAACATGACTCTTA+TGG - Chr1:34934599-34934618 MsG0180002211.01.T01:intron 30.0%
GATCTCAAATCAACATCATT+AGG + Chr1:34932851-34932870 None:intergenic 30.0%
GATTCCTTCTGTATCAATTT+CGG - Chr1:34932903-34932922 MsG0180002211.01.T01:CDS 30.0%
TAAAATGGAAGGTAGTTCAA+TGG + Chr1:34933618-34933637 None:intergenic 30.0%
TAACACAAAAACCATGACTA+TGG + Chr1:34933302-34933321 None:intergenic 30.0%
TAACTGCAGTACTAAGATAA+GGG + Chr1:34932403-34932422 None:intergenic 30.0%
TAAGAGGGAAATTGAGAAAA+TGG + Chr1:34934282-34934301 None:intergenic 30.0%
TAATACCAACTGGTAGAAAA+AGG - Chr1:34933910-34933929 MsG0180002211.01.T01:intron 30.0%
TCTTTAGTATGCTTAGTACA+AGG - Chr1:34933885-34933904 MsG0180002211.01.T01:intron 30.0%
! ACTAAGTGAAGTTGATTACA+TGG - Chr1:34934802-34934821 MsG0180002211.01.T01:intron 30.0%
! ATTAAGTAGTTTGTCCTAAG+AGG + Chr1:34934298-34934317 None:intergenic 30.0%
! ATTTTCTCAATTTCCCTCTT+AGG - Chr1:34934281-34934300 MsG0180002211.01.T01:intron 30.0%
! CTATTCTTTGTTTCTCATCT+TGG + Chr1:34935155-34935174 None:intergenic 30.0%
! GGATTAAAATCTGAGATCAA+TGG + Chr1:34933258-34933277 None:intergenic 30.0%
! GTTTTTATCAACTCTGAGTA+GGG - Chr1:34933193-34933212 MsG0180002211.01.T01:CDS 30.0%
! TAAAATCTGAGATCAATGGA+GGG + Chr1:34933254-34933273 None:intergenic 30.0%
! TATTGACACCACAATTTTCT+CGG - Chr1:34934020-34934039 MsG0180002211.01.T01:intron 30.0%
! TCTCAGATTAGTCAATCTTT+AGG - Chr1:34932996-34933015 MsG0180002211.01.T01:intron 30.0%
! TGACTTTTCTGTTGGAAAAT+GGG - Chr1:34932340-34932359 MsG0180002211.01.T01:three_prime_UTR 30.0%
! TGTTAAGATTTAGAGCTCAA+TGG + Chr1:34934880-34934899 None:intergenic 30.0%
! TTAAAATCTGAGATCAATGG+AGG + Chr1:34933255-34933274 None:intergenic 30.0%
! TTAAGTAGTTTGTCCTAAGA+GGG + Chr1:34934297-34934316 None:intergenic 30.0%
! TTTTTATCAACTCTGAGTAG+GGG - Chr1:34933194-34933213 MsG0180002211.01.T01:CDS 30.0%
!! TGTTTTTATCAACTCTGAGT+AGG - Chr1:34933192-34933211 MsG0180002211.01.T01:CDS 30.0%
!! TTGAAATTTTAAGTGCTCTG+AGG + Chr1:34932775-34932794 None:intergenic 30.0%
!!! TGTAAGACTCTCTTATTTTC+TGG + Chr1:34934110-34934129 None:intergenic 30.0%
!!! TTCGCCTATGATTTTGTTTT+TGG - Chr1:34934904-34934923 MsG0180002211.01.T01:intron 30.0%
AAGAAAGAGAATCATGTTGG+TGG - Chr1:34933833-34933852 MsG0180002211.01.T01:intron 35.0%
AAGATACAAAAACCAGACTG+CGG + Chr1:34935495-34935514 None:intergenic 35.0%
AATCCTATCCGAGAAAATTG+TGG + Chr1:34934031-34934050 None:intergenic 35.0%
ACTGAGCTGAATCAAATACA+AGG + Chr1:34934181-34934200 None:intergenic 35.0%
ACTTAGTGAGATGTAAGACT+TGG + Chr1:34934789-34934808 None:intergenic 35.0%
AGAAAGAGAATCATGTTGGT+GGG - Chr1:34933834-34933853 MsG0180002211.01.T01:intron 35.0%
AGATGAACGTGAAATCAACA+TGG - Chr1:34935432-34935451 MsG0180002211.01.T01:CDS 35.0%
ATATAGTACCTGTTATGCCT+AGG + Chr1:34934717-34934736 None:intergenic 35.0%
ATCAAAAAGGTCTGAGTACA+TGG - Chr1:34934628-34934647 MsG0180002211.01.T01:intron 35.0%
ATGCATAACTTCCATAGTCA+TGG - Chr1:34933288-34933307 MsG0180002211.01.T01:CDS 35.0%
ATGTTAACCTGTACTCTTAG+TGG - Chr1:34932627-34932646 MsG0180002211.01.T01:three_prime_UTR 35.0%
CAAAATCAGCTTATGGACAT+GGG - Chr1:34934454-34934473 MsG0180002211.01.T01:intron 35.0%
CTTCATTACCATTGAATGGA+AGG + Chr1:34933961-34933980 None:intergenic 35.0%
CTTCTGACAGAAAAACTTCA+GGG + Chr1:34933487-34933506 None:intergenic 35.0%
CTTTCTTGACTAATACAGGT+GGG - Chr1:34934551-34934570 MsG0180002211.01.T01:intron 35.0%
GAAGTTATGCATATAGGAGA+TGG + Chr1:34933280-34933299 None:intergenic 35.0%
GAGAAGAAAGAGAATCATGT+TGG - Chr1:34933830-34933849 MsG0180002211.01.T01:intron 35.0%
GCAGTTACTTGTCAAAAGAA+TGG - Chr1:34932416-34932435 MsG0180002211.01.T01:three_prime_UTR 35.0%
GCTGAAGAAAATGAGATTTC+CGG - Chr1:34935053-34935072 MsG0180002211.01.T01:intron 35.0%
GCTTCTTTCTTGACTAATAC+AGG - Chr1:34934547-34934566 MsG0180002211.01.T01:intron 35.0%
GTAACTGCAGTACTAAGATA+AGG + Chr1:34932404-34932423 None:intergenic 35.0%
GTAATATCTTGCAGGTATAC+CGG + Chr1:34935075-34935094 None:intergenic 35.0%
TACTATGACTACTTGTGTCA+AGG + Chr1:34933084-34933103 None:intergenic 35.0%
TCAAAAAGGTCTGAGTACAT+GGG - Chr1:34934629-34934648 MsG0180002211.01.T01:intron 35.0%
TCATTGTCGTAATATCTTGC+AGG + Chr1:34935083-34935102 None:intergenic 35.0%
TCTGATAAAACAAGCTCGTA+AGG - Chr1:34934212-34934231 MsG0180002211.01.T01:intron 35.0%
TCTTTCTTGACTAATACAGG+TGG - Chr1:34934550-34934569 MsG0180002211.01.T01:intron 35.0%
TGACTGACATGTTACAAACT+AGG + Chr1:34933457-34933476 None:intergenic 35.0%
TGGACAATGTTAACATCATC+AGG + Chr1:34932293-34932312 None:intergenic 35.0%
TGTTGTTGAAGGCTGAAAAA+TGG + Chr1:34935000-34935019 None:intergenic 35.0%
TTACTTGTCAAAAGAATGGG+AGG - Chr1:34932420-34932439 MsG0180002211.01.T01:three_prime_UTR 35.0%
TTGACTAACAGTTGACTAAG+AGG + Chr1:34935324-34935343 None:intergenic 35.0%
TTGAGGAGAATGCAAAGTAT+TGG - Chr1:34934141-34934160 MsG0180002211.01.T01:intron 35.0%
TTGTATTTGATTCAGCTCAG+TGG - Chr1:34934180-34934199 MsG0180002211.01.T01:intron 35.0%
TTTGATGCACTAAGGTTTCT+TGG - Chr1:34933801-34933820 MsG0180002211.01.T01:intron 35.0%
! AACAAATCCACTAAGAGTAC+AGG + Chr1:34932637-34932656 None:intergenic 35.0%
! AAGAGATGTGACTTTTCTGT+TGG - Chr1:34932332-34932351 MsG0180002211.01.T01:three_prime_UTR 35.0%
! AAGATTTAGAGCTCAATGGT+TGG + Chr1:34934876-34934895 None:intergenic 35.0%
! AGATTAGTCAATCTTTAGGC+CGG - Chr1:34933000-34933019 MsG0180002211.01.T01:intron 35.0%
! CATGCTTCTGAAAATGACTT+TGG + Chr1:34934691-34934710 None:intergenic 35.0%
! CTTAGAGTGTGCTTTTCTTA+AGG - Chr1:34932870-34932889 MsG0180002211.01.T01:CDS 35.0%
! GTGACTTTTCTGTTGGAAAA+TGG - Chr1:34932339-34932358 MsG0180002211.01.T01:three_prime_UTR 35.0%
!! TCATTAGAAAAAGTTGGTGG+AGG - Chr1:34935461-34935480 MsG0180002211.01.T01:CDS 35.0%
!! TGCTAGATTCTCTGTTGTTT+TGG + Chr1:34932313-34932332 None:intergenic 35.0%
!!! GGTTTTTTATGCAGGGAAAA+TGG - Chr1:34934943-34934962 MsG0180002211.01.T01:intron 35.0%
AATGACTGCAATCAGAGGAA+TGG + Chr1:34935179-34935198 None:intergenic 40.0%
ACATCCTTCAGTGTATAGGA+AGG - Chr1:34935122-34935141 MsG0180002211.01.T01:intron 40.0%
AGAAACCCAACATCATCTTG+TGG + Chr1:34932263-34932282 None:intergenic 40.0%
AGAAGAGTTCCACCAAACAA+AGG + Chr1:34935605-34935624 None:intergenic 40.0%
ATACAGGTGGGATTACTACA+AGG - Chr1:34934563-34934582 MsG0180002211.01.T01:intron 40.0%
ATCCAATCTCACTGTTCACT+TGG + Chr1:34932975-34932994 None:intergenic 40.0%
ATGGACATCCTTCAGTGTAT+AGG - Chr1:34935118-34935137 MsG0180002211.01.T01:intron 40.0%
ATTCCTCTGATTGCAGTCAT+TGG - Chr1:34935178-34935197 MsG0180002211.01.T01:intron 40.0%
CACTTCTCATAATCGGAATC+TGG + Chr1:34932446-34932465 None:intergenic 40.0%
CAGATTCCGATTATGAGAAG+TGG - Chr1:34932444-34932463 MsG0180002211.01.T01:three_prime_UTR 40.0%
CCAAAATCAGCTTATGGACA+TGG - Chr1:34934453-34934472 MsG0180002211.01.T01:intron 40.0%
CCACTTCCACTTCTCATAAT+CGG + Chr1:34932453-34932472 None:intergenic 40.0%
CCTTCTGACAGAAAAACTTC+AGG + Chr1:34933488-34933507 None:intergenic 40.0%
GAAACCCAACATCATCTTGT+GGG + Chr1:34932262-34932281 None:intergenic 40.0%
GCAAAATGGTTCTTGTGACT+TGG + Chr1:34933535-34933554 None:intergenic 40.0%
GGAATGATATGAAGAGAAGG+TGG + Chr1:34934261-34934280 None:intergenic 40.0%
GGTTCAATACCTCCTTTGTT+TGG - Chr1:34935590-34935609 MsG0180002211.01.T01:CDS 40.0%
GTACAAGGTGTAATACCAAC+TGG - Chr1:34933900-34933919 MsG0180002211.01.T01:intron 40.0%
GTACTAAGATAAGGGCAGTT+AGG + Chr1:34932395-34932414 None:intergenic 40.0%
GTATCTTGGATTCTGCAACT+TGG - Chr1:34935508-34935527 MsG0180002211.01.T01:CDS 40.0%
GTTACAATGCTGCCAACTTT+AGG + Chr1:34935362-34935381 None:intergenic 40.0%
TACGGATATGGTAAGCTTGT+GGG - Chr1:34933332-34933351 MsG0180002211.01.T01:intron 40.0%
TATTTGATTCAGCTCAGTGG+TGG - Chr1:34934183-34934202 MsG0180002211.01.T01:intron 40.0%
TCCAATCTCACTGTTCACTT+GGG + Chr1:34932974-34932993 None:intergenic 40.0%
TCCACCGAAATTGATACAGA+AGG + Chr1:34932910-34932929 None:intergenic 40.0%
TCCTTCTGTATCAATTTCGG+TGG - Chr1:34932906-34932925 MsG0180002211.01.T01:CDS 40.0%
TCTGTAGGTTTGATGCACTA+AGG - Chr1:34933793-34933812 MsG0180002211.01.T01:intron 40.0%
TGAACGTGAAATCAACATGG+AGG - Chr1:34935435-34935454 MsG0180002211.01.T01:CDS 40.0%
TGAAGGCTGAAAAATGGTAG+AGG + Chr1:34934994-34935013 None:intergenic 40.0%
TTAGTGCATCAAACCTACAG+AGG + Chr1:34933794-34933813 None:intergenic 40.0%
TTCTTCAGTTCCACTAACAG+TGG + Chr1:34934083-34934102 None:intergenic 40.0%
TTTGGCATTCTCTAGCGATT+GGG - Chr1:34934922-34934941 MsG0180002211.01.T01:intron 40.0%
! AACTAGCTTATTGCCTCTGT+AGG - Chr1:34933778-34933797 MsG0180002211.01.T01:intron 40.0%
! ACACCACAATTTTCTCGGAT+AGG - Chr1:34934025-34934044 MsG0180002211.01.T01:intron 40.0%
! CCTGAAGTTTTTCTGTCAGA+AGG - Chr1:34933485-34933504 MsG0180002211.01.T01:intron 40.0%
! GTTAGTCAACATGTAACGGA+AGG - Chr1:34935335-34935354 MsG0180002211.01.T01:intron 40.0%
! TCAATACCTCCTTTGTTTGG+TGG - Chr1:34935593-34935612 MsG0180002211.01.T01:CDS 40.0%
! TCATTTTCTTCAGCACTCCT+TGG + Chr1:34935047-34935066 None:intergenic 40.0%
! TTAGAGCTCAATGGTTGGTT+TGG + Chr1:34934871-34934890 None:intergenic 40.0%
! TTTTGGCATTCTCTAGCGAT+TGG - Chr1:34934921-34934940 MsG0180002211.01.T01:intron 40.0%
!! AGGAGGTATTGAACCAAAAC+TGG + Chr1:34935585-34935604 None:intergenic 40.0%
!! CCATGTCCATAAGCTGATTT+TGG + Chr1:34934456-34934475 None:intergenic 40.0%
!! GAGAATGCAAAGTATTGGAG+AGG - Chr1:34934146-34934165 MsG0180002211.01.T01:intron 40.0%
!! TTTTCAGAAGCATGTCACCT+AGG - Chr1:34934697-34934716 MsG0180002211.01.T01:intron 40.0%
!!! AGCGATTGGGTTTTTTATGC+AGG - Chr1:34934935-34934954 MsG0180002211.01.T01:intron 40.0%
!!! GCAGTCTGGTTTTTGTATCT+TGG - Chr1:34935494-34935513 MsG0180002211.01.T01:CDS 40.0%
!!! GCGATTGGGTTTTTTATGCA+GGG - Chr1:34934936-34934955 MsG0180002211.01.T01:intron 40.0%
AACTCTTCTGTGTAGGTGGA+GGG - Chr1:34935616-34935635 MsG0180002211.01.T01:CDS 45.0%
AATCTCACTGTTCACTTGGG+GGG + Chr1:34932971-34932990 None:intergenic 45.0%
AGAAAAAGGGTGACCTACCA+TGG - Chr1:34933924-34933943 MsG0180002211.01.T01:intron 45.0%
AGAGTTCCACCAAACAAAGG+AGG + Chr1:34935602-34935621 None:intergenic 45.0%
AGGTGGGATTACTACAAGGA+GGG - Chr1:34934567-34934586 MsG0180002211.01.T01:intron 45.0%
ATTGAATGGAAGGCCATTGC+AGG + Chr1:34933951-34933970 None:intergenic 45.0%
CAAGTGGTTGTTCTATCCCA+AGG - Chr1:34932477-34932496 MsG0180002211.01.T01:three_prime_UTR 45.0%
CAATCTCACTGTTCACTTGG+GGG + Chr1:34932972-34932991 None:intergenic 45.0%
CCAATCTCACTGTTCACTTG+GGG + Chr1:34932973-34932992 None:intergenic 45.0%
CCACTGCACATTATCTCTTC+TGG - Chr1:34932235-34932254 MsG0180002211.01.T01:three_prime_UTR 45.0%
CCAGAAGAGATAATGTGCAG+TGG + Chr1:34932238-34932257 None:intergenic 45.0%
CCGATTATGAGAAGTGGAAG+TGG - Chr1:34932450-34932469 MsG0180002211.01.T01:three_prime_UTR 45.0%
CTTGCCTTCCTATACACTGA+AGG + Chr1:34935129-34935148 None:intergenic 45.0%
CTTGGATTCTGCAACTTGGT+TGG - Chr1:34935512-34935531 MsG0180002211.01.T01:CDS 45.0%
CTTGGGATAGAACAACCACT+TGG + Chr1:34932479-34932498 None:intergenic 45.0%
GAACCTTTAGTAGTGCTCCA+AGG - Chr1:34935027-34935046 MsG0180002211.01.T01:intron 45.0%
GGGCAGTTAGGATCATAAAG+AGG + Chr1:34932383-34932402 None:intergenic 45.0%
GTACGGATATGGTAAGCTTG+TGG - Chr1:34933331-34933350 MsG0180002211.01.T01:intron 45.0%
GTGGGTGATGAGTTTGTGAA+TGG - Chr1:34933350-34933369 MsG0180002211.01.T01:intron 45.0%
TCCAAATATCAGGCACACCA+GGG + Chr1:34935209-34935228 None:intergenic 45.0%
TGCAATGGCCTTCCATTCAA+TGG - Chr1:34933950-34933969 MsG0180002211.01.T01:intron 45.0%
TGGAAGGTAGTTCAATGGCT+AGG + Chr1:34933613-34933632 None:intergenic 45.0%
TGGACCCACAAGATGATGTT+GGG - Chr1:34932255-34932274 MsG0180002211.01.T01:three_prime_UTR 45.0%
TGGCAATGTGAACAGACCTT+GGG + Chr1:34932496-34932515 None:intergenic 45.0%
TTCCAAATATCAGGCACACC+AGG + Chr1:34935210-34935229 None:intergenic 45.0%
TTGGTGGAACTCTTCTGTGT+AGG - Chr1:34935609-34935628 MsG0180002211.01.T01:CDS 45.0%
! ACTCCTTGGAGCACTACTAA+AGG + Chr1:34935033-34935052 None:intergenic 45.0%
! ATGAGTCATAGGTGTTGCCA+TGG + Chr1:34932183-34932202 None:intergenic 45.0%
! GCAGAAAGTAGTGCCAGTTT+TGG - Chr1:34935569-34935588 MsG0180002211.01.T01:CDS 45.0%
! GTAACGGAAGGACCTAAAGT+TGG - Chr1:34935347-34935366 MsG0180002211.01.T01:intron 45.0%
! GTCACCCTTTTTCTACCAGT+TGG + Chr1:34933918-34933937 None:intergenic 45.0%
! GTTCAGGAGCATGTTGTTGA+AGG + Chr1:34935011-34935030 None:intergenic 45.0%
! TCTGAGATCAATGGAGGGTT+TGG + Chr1:34933249-34933268 None:intergenic 45.0%
! TGGAGCACTACTAAAGGTTC+AGG + Chr1:34935027-34935046 None:intergenic 45.0%
AAATATCAGGCACACCAGGG+AGG + Chr1:34935206-34935225 None:intergenic 50.0%
AAGGTCTGAGTACATGGGCA+AGG - Chr1:34934634-34934653 MsG0180002211.01.T01:intron 50.0%
AAGTGGAAGTGGAAGCCAAG+TGG - Chr1:34932461-34932480 MsG0180002211.01.T01:three_prime_UTR 50.0%
ACTCTTCTGTGTAGGTGGAG+GGG - Chr1:34935617-34935636 MsG0180002211.01.T01:CDS 50.0%
AGGATGTCCATCTCTGCGTA+AGG + Chr1:34935109-34935128 None:intergenic 50.0%
ATCAACTCTGAGTAGGGGAG+TGG - Chr1:34933199-34933218 MsG0180002211.01.T01:CDS 50.0%
ATCTCACTGTTCACTTGGGG+GGG + Chr1:34932970-34932989 None:intergenic 50.0%
ATGACTGCCTTACGCAGAGA+TGG - Chr1:34935099-34935118 MsG0180002211.01.T01:intron 50.0%
CAGGTGGGATTACTACAAGG+AGG - Chr1:34934566-34934585 MsG0180002211.01.T01:intron 50.0%
CCCCAAGTGAACAGTGAGAT+TGG - Chr1:34932970-34932989 MsG0180002211.01.T01:intron 50.0%
CTGGACCCACAAGATGATGT+TGG - Chr1:34932254-34932273 MsG0180002211.01.T01:three_prime_UTR 50.0%
GAACTCTTCTGTGTAGGTGG+AGG - Chr1:34935615-34935634 MsG0180002211.01.T01:CDS 50.0%
GCACCAATGACTGCAATCAG+AGG + Chr1:34935184-34935203 None:intergenic 50.0%
GCATGTCACCTAGGCATAAC+AGG - Chr1:34934706-34934725 MsG0180002211.01.T01:intron 50.0%
GTGGAACTCTTCTGTGTAGG+TGG - Chr1:34935612-34935631 MsG0180002211.01.T01:CDS 50.0%
GTGGCAATGTGAACAGACCT+TGG + Chr1:34932497-34932516 None:intergenic 50.0%
GTTGCCATGGAAGGAGCTAA+GGG + Chr1:34932170-34932189 None:intergenic 50.0%
TCCCTGGTGTGCCTGATATT+TGG - Chr1:34935205-34935224 MsG0180002211.01.T01:intron 50.0%
TCTGAGTACATGGGCAAGGT+GGG - Chr1:34934638-34934657 MsG0180002211.01.T01:intron 50.0%
TCTTTGGGCACCACTGTTAG+TGG - Chr1:34934070-34934089 MsG0180002211.01.T01:intron 50.0%
TGAGTAGGGGAGTGGAATGT+GGG - Chr1:34933207-34933226 MsG0180002211.01.T01:CDS 50.0%
TGTTGCCATGGAAGGAGCTA+AGG + Chr1:34932171-34932190 None:intergenic 50.0%
! GTCATAGGTGTTGCCATGGA+AGG + Chr1:34932179-34932198 None:intergenic 50.0%
ACTTGGTTGGCGTTCTGCTG+TGG - Chr1:34935525-34935544 MsG0180002211.01.T01:CDS 55.0%
CACTCCCTTAGCTCCTTCCA+TGG - Chr1:34932163-34932182 MsG0180002211.01.T01:three_prime_UTR 55.0%
CTCTTCTGTGTAGGTGGAGG+GGG - Chr1:34935618-34935637 MsG0180002211.01.T01:CDS 55.0%
CTGAGTAGGGGAGTGGAATG+TGG - Chr1:34933206-34933225 MsG0180002211.01.T01:CDS 55.0%
GACCTACCATGGACCTGCAA+TGG - Chr1:34933935-34933954 MsG0180002211.01.T01:intron 55.0%
GTCTGAGTACATGGGCAAGG+TGG - Chr1:34934637-34934656 MsG0180002211.01.T01:intron 55.0%
GAGTACATGGGCAAGGTGGG+TGG - Chr1:34934641-34934660 MsG0180002211.01.T01:intron 60.0%
GGAAGGCCATTGCAGGTCCA+TGG + Chr1:34933944-34933963 None:intergenic 60.0%
GGCCATTGCAGGTCCATGGT+AGG + Chr1:34933940-34933959 None:intergenic 60.0%
TGGTTGGCGTTCTGCTGTGG+TGG - Chr1:34935528-34935547 MsG0180002211.01.T01:CDS 60.0%
TGTGTAGGTGGAGGGGGCTT+TGG - Chr1:34935624-34935643 MsG0180002211.01.T01:CDS 60.0%
TTGGCGTTCTGCTGTGGTGG+TGG - Chr1:34935531-34935550 MsG0180002211.01.T01:CDS 60.0%
! GAGGTGTCAAAGCCGCAGTC+TGG - Chr1:34935480-34935499 MsG0180002211.01.T01:CDS 60.0%
! TGCAGTCATTGGTGCCTCCC+TGG - Chr1:34935189-34935208 MsG0180002211.01.T01:intron 60.0%
!! GTTCTGCTGTGGTGGTGGTG+TGG - Chr1:34935536-34935555 MsG0180002211.01.T01:CDS 60.0%
! GTGGAGGGGGCTTTGGTGTG+TGG - Chr1:34935631-34935650 MsG0180002211.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 34932162 34935742 34932162 ID=MsG0180002211.01;Name=MsG0180002211.01
Chr1 mRNA 34932162 34935742 34932162 ID=MsG0180002211.01.T01;Parent=MsG0180002211.01;Name=MsG0180002211.01.T01;_AED=0.34;_eAED=0.34;_QI=20|0.5|1|1|1|1|3|488|257
Chr1 exon 34932162 34932947 34932162 ID=MsG0180002211.01.T01:exon:1507;Parent=MsG0180002211.01.T01
Chr1 exon 34933177 34933335 34933177 ID=MsG0180002211.01.T01:exon:1506;Parent=MsG0180002211.01.T01
Chr1 exon 34935406 34935742 34935406 ID=MsG0180002211.01.T01:exon:1505;Parent=MsG0180002211.01.T01
Chr1 five_prime_UTR 34935723 34935742 34935723 ID=MsG0180002211.01.T01:five_prime_utr;Parent=MsG0180002211.01.T01
Chr1 CDS 34935406 34935722 34935406 ID=MsG0180002211.01.T01:cds;Parent=MsG0180002211.01.T01
Chr1 CDS 34933177 34933335 34933177 ID=MsG0180002211.01.T01:cds;Parent=MsG0180002211.01.T01
Chr1 CDS 34932650 34932947 34932650 ID=MsG0180002211.01.T01:cds;Parent=MsG0180002211.01.T01
Chr1 three_prime_UTR 34932162 34932649 34932162 ID=MsG0180002211.01.T01:three_prime_utr;Parent=MsG0180002211.01.T01
Gene Sequence

>MsG0180002211.01.T01

ATGGCAACACCTATGACTCATTTGCTTTCTTTTTTCTTGCTGTTCAGCATCTTCCACTGCACATTATCTCTTCTGGACCCACAAGATGATGTTGGGTTTCTAGTTGAACCTGATGATGTTAACATTGTCCAAAACAACAGAGAATCTAGCAAGAGATGTGACTTTTCTGTTGGAAAATGGGTTTATGATGAATCTTATCCTCTTTATGATCCTAACTGCCCTTATCTTAGTACTGCAGTTACTTGTCAAAAGAATGGGAGGCCAGATTCCGATTATGAGAAGTGGAAGTGGAAGCCAAGTGGTTGTTCTATCCCAAGGTGGGATTACTACAAGGAGGGAAATAATCTGATCAAAAACATGACTCTTATGGTTGCTTATCAAAAAGGTCTGAGTACATGGGCAAGGTGGGTGGATCTAAATCTAAACCCTAAAAAAACCAAAGTCATTTTCAGAAGCATGTCACCTAGGCATAACAGGGAAAATGGTTCGAAATGCGACAATCAGAAACAACCTCTACCATTTTTCAGCCTTCAACAACATGCTCCTGAACCTTTAGTAGTGCTCCAAGGAGTGCTGAAGAAAATGAGATTTCCGGTATACCTGCAAGATATTACGACAATGACTGCCTTACGCAGAGATGGACATCCTTCAGTGTATAGGAAGGCAAGCAGCCAAGATGAGAAACAAAGAATAGGCCATTCCTCTGATTGCAGTCATTGGTGCCTCCCTGGTGTGCCTGATATTTGGAATGAGATGTTGAGTGCGCTGCTTTGA

Protein sequence

>MsG0180002211.01.T01

MATPMTHLLSFFLLFSIFHCTLSLLDPQDDVGFLVEPDDVNIVQNNRESSKRCDFSVGKWVYDESYPLYDPNCPYLSTAVTCQKNGRPDSDYEKWKWKPSGCSIPRWDYYKEGNNLIKNMTLMVAYQKGLSTWARWVDLNLNPKKTKVIFRSMSPRHNRENGSKCDNQKQPLPFFSLQQHAPEPLVVLQGVLKKMRFPVYLQDITTMTALRRDGHPSVYRKASSQDEKQRIGHSSDCSHWCLPGVPDIWNEMLSALL*