Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046269.01.T01 | KEH31753.1 | 98.148 | 54 | 1 | 0 | 64 | 117 | 147 | 200 | 6.53E-29 | 114 |
| MsG0880046269.01.T01 | KEH31753.1 | 89.744 | 39 | 4 | 0 | 25 | 63 | 1 | 39 | 9.69E-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046269.01.T01 | O04164 | 50.943 | 53 | 24 | 1 | 65 | 115 | 455 | 507 | 9.34E-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046269.01.T01 | A0A072URR2 | 98.148 | 54 | 1 | 0 | 64 | 117 | 147 | 200 | 3.12e-29 | 114 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048683.01 | MsG0880046269.01 | 0.806005 | 1.014601e-49 | 5.446819e-47 |
| MsG0180000152.01 | MsG0880046269.01 | 0.802792 | 4.741555e-49 | 2.343813e-46 |
| MsG0180000335.01 | MsG0880046269.01 | 0.805070 | 1.594440e-49 | 8.356153e-47 |
| MsG0180000470.01 | MsG0880046269.01 | 0.808600 | 2.860591e-50 | 1.642500e-47 |
| MsG0180002482.01 | MsG0880046269.01 | 0.802477 | 5.506119e-49 | 2.699843e-46 |
| MsG0880044542.01 | MsG0880046269.01 | 0.803596 | 3.232655e-49 | 1.631156e-46 |
| MsG0880044573.01 | MsG0880046269.01 | 0.802832 | 4.653157e-49 | 2.302476e-46 |
| MsG0880045371.01 | MsG0880046269.01 | 0.801693 | 7.982965e-49 | 3.836855e-46 |
| MsG0880045926.01 | MsG0880046269.01 | 0.807353 | 5.269136e-50 | 2.928376e-47 |
| MsG0780040576.01 | MsG0880046269.01 | -0.809901 | 1.504428e-50 | 8.942070e-48 |
| MsG0780040596.01 | MsG0880046269.01 | 0.819808 | 9.562046e-53 | 7.435003e-50 |
| MsG0380012005.01 | MsG0880046269.01 | 0.806677 | 7.322426e-50 | 3.998627e-47 |
| MsG0380012007.01 | MsG0880046269.01 | 0.804327 | 2.278004e-49 | 1.171197e-46 |
| MsG0380014573.01 | MsG0880046269.01 | 0.805115 | 1.559640e-49 | 8.183198e-47 |
| MsG0680032204.01 | MsG0880046269.01 | 0.816356 | 5.769748e-52 | 4.079265e-49 |
| MsG0480019434.01 | MsG0880046269.01 | 0.800376 | 1.483638e-48 | 6.897640e-46 |
| MsG0480020839.01 | MsG0880046269.01 | 0.845069 | 5.111737e-59 | 8.418667e-56 |
| MsG0480020874.01 | MsG0880046269.01 | 0.807958 | 3.918656e-50 | 2.212477e-47 |
| MsG0480021536.01 | MsG0880046269.01 | 0.829235 | 5.766512e-55 | 5.867252e-52 |
| MsG0480021558.01 | MsG0880046269.01 | 0.806217 | 9.158669e-50 | 4.943333e-47 |
| MsG0480021853.01 | MsG0880046269.01 | 0.814287 | 1.663827e-51 | 1.111863e-48 |
| MsG0480022222.01 | MsG0880046269.01 | 0.811284 | 7.562089e-51 | 4.661813e-48 |
| MsG0480022707.01 | MsG0880046269.01 | 0.822430 | 2.379274e-53 | 1.991092e-50 |
| MsG0480023654.01 | MsG0880046269.01 | 0.808704 | 2.716758e-50 | 1.564157e-47 |
| MsG0480023814.01 | MsG0880046269.01 | 0.807618 | 4.628230e-50 | 2.589914e-47 |
| MsG0580024551.01 | MsG0880046269.01 | 0.803061 | 4.172704e-49 | 2.076571e-46 |
| MsG0580024935.01 | MsG0880046269.01 | 0.817991 | 2.474474e-52 | 1.829557e-49 |
| MsG0580025022.01 | MsG0880046269.01 | 0.809729 | 1.638477e-50 | 9.695161e-48 |
| MsG0580025448.01 | MsG0880046269.01 | 0.811240 | 7.728963e-51 | 4.759265e-48 |
| MsG0380015720.01 | MsG0880046269.01 | 0.818540 | 1.858229e-52 | 1.394912e-49 |
| MsG0380016004.01 | MsG0880046269.01 | 0.851640 | 7.782128e-61 | 1.585369e-57 |
| MsG0380016064.01 | MsG0880046269.01 | 0.801956 | 7.048915e-49 | 3.410685e-46 |
| MsG0380016191.01 | MsG0880046269.01 | -0.805601 | 1.233764e-49 | 6.554503e-47 |
| MsG0380016910.01 | MsG0880046269.01 | 0.822704 | 2.054369e-53 | 1.732605e-50 |
| MsG0580027152.01 | MsG0880046269.01 | 0.810256 | 1.261487e-50 | 7.567785e-48 |
| MsG0580027833.01 | MsG0880046269.01 | 0.802216 | 6.233177e-49 | 3.036035e-46 |
| MsG0580029554.01 | MsG0880046269.01 | 0.801706 | 7.934843e-49 | 3.815007e-46 |
| MsG0280008615.01 | MsG0880046269.01 | 0.812052 | 5.148168e-51 | 3.239180e-48 |
| MsG0280010378.01 | MsG0880046269.01 | 0.809586 | 1.758692e-50 | 1.036703e-47 |
| MsG0780035948.01 | MsG0880046269.01 | 0.813747 | 2.188173e-51 | 1.440962e-48 |
| MsG0780038386.01 | MsG0880046269.01 | 0.803574 | 3.267574e-49 | 1.647865e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046269.01.T01 | MTR_4g104570 | 98.148 | 54 | 1 | 0 | 64 | 117 | 147 | 200 | 7.91e-33 | 114 |
| MsG0880046269.01.T01 | MTR_4g104570 | 89.744 | 39 | 4 | 0 | 25 | 63 | 1 | 39 | 1.17e-17 | 75.1 |
| MsG0880046269.01.T01 | MTR_4g104540 | 96.296 | 54 | 2 | 0 | 64 | 117 | 378 | 431 | 4.76e-30 | 111 |
| MsG0880046269.01.T01 | MTR_4g104540 | 90.000 | 40 | 4 | 0 | 24 | 63 | 231 | 270 | 1.03e-17 | 77.4 |
| MsG0880046269.01.T01 | MTR_4g104550 | 67.857 | 56 | 15 | 1 | 64 | 116 | 439 | 494 | 2.74e-20 | 85.1 |
| MsG0880046269.01.T01 | MTR_4g104550 | 77.500 | 40 | 9 | 0 | 24 | 63 | 292 | 331 | 1.34e-14 | 68.9 |
| MsG0880046269.01.T01 | MTR_4g104610 | 74.000 | 50 | 12 | 1 | 64 | 113 | 448 | 496 | 3.34e-18 | 79.0 |
| MsG0880046269.01.T01 | MTR_4g104610 | 87.179 | 39 | 5 | 0 | 24 | 62 | 301 | 339 | 1.61e-15 | 71.6 |
| MsG0880046269.01.T01 | MTR_4g089030 | 63.462 | 52 | 17 | 1 | 64 | 113 | 464 | 515 | 1.24e-15 | 71.6 |
| MsG0880046269.01.T01 | MTR_4g089055 | 61.538 | 52 | 18 | 1 | 64 | 113 | 462 | 513 | 3.60e-15 | 70.5 |
| MsG0880046269.01.T01 | MTR_4g089055 | 49.315 | 73 | 29 | 2 | 12 | 76 | 296 | 368 | 2.73e-12 | 62.4 |
| MsG0880046269.01.T01 | MTR_4g089025 | 61.538 | 52 | 18 | 1 | 64 | 113 | 465 | 516 | 6.20e-15 | 69.7 |
| MsG0880046269.01.T01 | MTR_0022s0290 | 57.407 | 54 | 20 | 1 | 65 | 115 | 464 | 517 | 1.27e-14 | 68.9 |
| MsG0880046269.01.T01 | MTR_4g089020 | 63.462 | 52 | 17 | 1 | 64 | 113 | 440 | 491 | 4.64e-14 | 67.4 |
| MsG0880046269.01.T01 | MTR_4g104640 | 62.500 | 40 | 15 | 0 | 23 | 62 | 316 | 355 | 3.00e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046269.01.T01 | AT3G48280 | 50.000 | 52 | 24 | 1 | 65 | 114 | 436 | 487 | 2.15e-11 | 59.7 |
| MsG0880046269.01.T01 | AT3G48300 | 38.372 | 86 | 40 | 1 | 24 | 109 | 285 | 357 | 2.37e-11 | 59.7 |
| MsG0880046269.01.T01 | AT3G48300 | 38.372 | 86 | 40 | 1 | 24 | 109 | 287 | 359 | 2.37e-11 | 59.7 |
| MsG0880046269.01.T01 | AT2G30750 | 48.148 | 54 | 28 | 0 | 24 | 77 | 294 | 347 | 5.53e-11 | 58.5 |
| MsG0880046269.01.T01 | AT2G30770 | 46.296 | 54 | 29 | 0 | 24 | 77 | 294 | 347 | 7.48e-11 | 58.2 |
Find 28 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTTCTTCATGGTATT+TGG | 0.107830 | 8:+71343523 | None:intergenic |
| ACCTAGTACATCAATTTAAC+TGG | 0.251658 | 8:-71343123 | MsG0880046269.01.T01:CDS |
| TTGGACATGTCTGAATCTTT+TGG | 0.261216 | 8:-71343076 | MsG0880046269.01.T01:CDS |
| TTCTTCTTTCAATTTCTTCA+TGG | 0.271619 | 8:+71343516 | None:intergenic |
| TTCTTGGTTTAGTTCTTGTT+AGG | 0.284060 | 8:+71343010 | None:intergenic |
| TCATAGAAAGATTCCTCTTA+TGG | 0.303196 | 8:-71343044 | MsG0880046269.01.T01:CDS |
| AAGCCAAGTGATCTGTTCTT+TGG | 0.306176 | 8:+71344483 | None:intergenic |
| CCACTCTAGCAAAGTGGATA+TGG | 0.323275 | 8:+71343570 | None:intergenic |
| TCTTGGTTTAGTTCTTGTTA+GGG | 0.381697 | 8:+71343011 | None:intergenic |
| ATTCAGGACATGTTTATTGC+AGG | 0.383065 | 8:-71343601 | MsG0880046269.01.T01:intron |
| CCCAGTTAAATTGATGTACT+AGG | 0.400246 | 8:+71343122 | None:intergenic |
| GAAGTAAGTAAAGTGGCTAA+TGG | 0.413940 | 8:-71343496 | MsG0880046269.01.T01:intron |
| GAAAGAAGAAGTAAGTAAAG+TGG | 0.480184 | 8:-71343503 | MsG0880046269.01.T01:CDS |
| GGTCAATGACAGAACTCTTA+AGG | 0.482595 | 8:-71343549 | MsG0880046269.01.T01:CDS |
| ACCTGGTGGTGCTGAAGGAT+TGG | 0.501420 | 8:-71343095 | MsG0880046269.01.T01:CDS |
| CAATTTAACTGGGAATTACC+TGG | 0.504499 | 8:-71343112 | MsG0880046269.01.T01:CDS |
| TTGGCTTTCCTATGACAAAA+CGG | 0.528506 | 8:-71344467 | MsG0880046269.01.T01:intron |
| GTTAAATTGATGTACTAGGT+TGG | 0.534321 | 8:+71343126 | None:intergenic |
| CCATATCCACTTTGCTAGAG+TGG | 0.537370 | 8:-71343570 | MsG0880046269.01.T01:CDS |
| GGGGTTGCAATTGCCATAAG+AGG | 0.549821 | 8:+71343031 | None:intergenic |
| CTTGGTTTAGTTCTTGTTAG+GGG | 0.554960 | 8:+71343012 | None:intergenic |
| GATCCAAAGAACAGATCACT+TGG | 0.561454 | 8:-71344486 | MsG0880046269.01.T01:CDS |
| TCCAATCCTTCAGCACCACC+AGG | 0.562498 | 8:+71343094 | None:intergenic |
| GAATTACCTGGTGGTGCTGA+AGG | 0.569484 | 8:-71343100 | MsG0880046269.01.T01:CDS |
| CATTGACCACTCTAGCAAAG+TGG | 0.569641 | 8:+71343564 | None:intergenic |
| CCTAGTACATCAATTTAACT+GGG | 0.605070 | 8:-71343122 | MsG0880046269.01.T01:CDS |
| GTCCTGGGCAGTGTATGCTA+CGG | 0.660471 | 8:-71343170 | MsG0880046269.01.T01:intron |
| TTTAACTGGGAATTACCTGG+TGG | 0.730778 | 8:-71343109 | MsG0880046269.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGTAAAAATTTATTAAA+GGG | - | Chr8:71343164-71343183 | MsG0880046269.01.T01:intron | 10.0% |
| !! | GAGAAGTAAAAATTTATTAA+AGG | - | Chr8:71343163-71343182 | MsG0880046269.01.T01:intron | 15.0% |
| !! | GATTAAATAAGATTATAAGA+AGG | + | Chr8:71343361-71343380 | None:intergenic | 15.0% |
| !! | TATGTATAAGTGTATTAATT+TGG | + | Chr8:71343268-71343287 | None:intergenic | 15.0% |
| !!! | ATTAAATCTTTATTTGATCA+TGG | - | Chr8:71343449-71343468 | MsG0880046269.01.T01:intron | 15.0% |
| !!! | GAATATTTATTTTATGTACT+TGG | + | Chr8:71343496-71343515 | None:intergenic | 15.0% |
| !! | TTATATTATCCTATTGTGAT+GGG | + | Chr8:71343429-71343448 | None:intergenic | 20.0% |
| !! | TTTATATTATCCTATTGTGA+TGG | + | Chr8:71343430-71343449 | None:intergenic | 20.0% |
| !!! | ATTTTAACGAATGTTATAGT+TGG | + | Chr8:71343314-71343333 | None:intergenic | 20.0% |
| !!! | GTACTTGGTTAAATTTTTAT+TGG | + | Chr8:71343481-71343500 | None:intergenic | 20.0% |
| ! | AGACAAGATATCAAACTAAA+TGG | - | Chr8:71344171-71344190 | MsG0880046269.01.T01:intron | 25.0% |
| ! | ATTATATTAATATGATGCGC+AGG | + | Chr8:71343771-71343790 | None:intergenic | 25.0% |
| ! | TCACTCACAATTAAAATCAT+TGG | - | Chr8:71343739-71343758 | MsG0880046269.01.T01:intron | 25.0% |
| ! | TGAGTAGTTCAATATGTTAA+AGG | - | Chr8:71344295-71344314 | MsG0880046269.01.T01:intron | 25.0% |
| ! | TTATATTAATATGATGCGCA+GGG | + | Chr8:71343770-71343789 | None:intergenic | 25.0% |
| ! | TTCAATTTCTTCATGGTATT+TGG | + | Chr8:71344012-71344031 | None:intergenic | 25.0% |
| ! | TTCTTCTTTCAATTTCTTCA+TGG | + | Chr8:71344019-71344038 | None:intergenic | 25.0% |
| !! | ACACTTATACATAAGTGTTT+TGG | - | Chr8:71343275-71343294 | MsG0880046269.01.T01:intron | 25.0% |
| !! | ATTTTGTTAGTAGACCTAAA+AGG | + | Chr8:71343640-71343659 | None:intergenic | 25.0% |
| !! | CACTTATACATAAGTGTTTT+GGG | - | Chr8:71343276-71343295 | MsG0880046269.01.T01:intron | 25.0% |
| !!! | AATGATTTTAATTGTGAGTG+AGG | + | Chr8:71343740-71343759 | None:intergenic | 25.0% |
| !!! | TCTTGTATTTGTTTCTATTC+AGG | - | Chr8:71343915-71343934 | MsG0880046269.01.T01:intron | 25.0% |
| AAAAGTCCATTAAGCTTCAA+AGG | + | Chr8:71343138-71343157 | None:intergenic | 30.0% | |
| AAAATCATACAAGTTCCTAG+AGG | + | Chr8:71343804-71343823 | None:intergenic | 30.0% | |
| AAATGTTGTATGTCATTAGG+CGG | - | Chr8:71343834-71343853 | MsG0880046269.01.T01:intron | 30.0% | |
| ACCTAGTACATCAATTTAAC+TGG | - | Chr8:71344409-71344428 | MsG0880046269.01.T01:intron | 30.0% | |
| CACAATTAAAATCATTGGAC+TGG | - | Chr8:71343744-71343763 | MsG0880046269.01.T01:intron | 30.0% | |
| CATGAAATACTTAAATGCAG+TGG | - | Chr8:71344093-71344112 | MsG0880046269.01.T01:intron | 30.0% | |
| CCTAGTACATCAATTTAACT+GGG | - | Chr8:71344410-71344429 | MsG0880046269.01.T01:intron | 30.0% | |
| GAAAGAAGAAGTAAGTAAAG+TGG | - | Chr8:71344029-71344048 | MsG0880046269.01.T01:intron | 30.0% | |
| GTTAAATTGATGTACTAGGT+TGG | + | Chr8:71344409-71344428 | None:intergenic | 30.0% | |
| TATCTATCTTTGACGAAAGA+AGG | - | Chr8:71343581-71343600 | MsG0880046269.01.T01:CDS | 30.0% | |
| TCAAATCTTCTTCAGTTATG+TGG | + | Chr8:71344069-71344088 | None:intergenic | 30.0% | |
| TCATAGAAAGATTCCTCTTA+TGG | - | Chr8:71344488-71344507 | MsG0880046269.01.T01:CDS | 30.0% | |
| TCGTCAAAGATAGATATAAC+CGG | + | Chr8:71343577-71343596 | None:intergenic | 30.0% | |
| TGCAAATGTTGTATGTCATT+AGG | - | Chr8:71343831-71343850 | MsG0880046269.01.T01:intron | 30.0% | |
| TTCAAGTAGATAGAAGAAGA+TGG | - | Chr8:71343517-71343536 | MsG0880046269.01.T01:CDS | 30.0% | |
| ! | ACTTTGTTGAAGTTTTGCTT+TGG | - | Chr8:71343024-71343043 | MsG0880046269.01.T01:CDS | 30.0% |
| !! | TATCATCCTTTGAAGCTTAA+TGG | - | Chr8:71343129-71343148 | MsG0880046269.01.T01:CDS | 30.0% |
| !!! | CTTTTTTCGTTTTGCATAAG+CGG | + | Chr8:71343693-71343712 | None:intergenic | 30.0% |
| AAGAAGGAATCTTTGACCTA+AGG | - | Chr8:71343597-71343616 | MsG0880046269.01.T01:CDS | 35.0% | |
| AATTGAGGGATGTAAACGTA+GGG | + | Chr8:71344127-71344146 | None:intergenic | 35.0% | |
| ACATACAACATTTGCAAGCA+TGG | + | Chr8:71343827-71343846 | None:intergenic | 35.0% | |
| AGAAGGAATCTTTGACCTAA+GGG | - | Chr8:71343598-71343617 | MsG0880046269.01.T01:CDS | 35.0% | |
| ATTCAGGACATGTTTATTGC+AGG | - | Chr8:71343931-71343950 | MsG0880046269.01.T01:intron | 35.0% | |
| CAATTTAACTGGGAATTACC+TGG | - | Chr8:71344420-71344439 | MsG0880046269.01.T01:intron | 35.0% | |
| CCCAGTTAAATTGATGTACT+AGG | + | Chr8:71344413-71344432 | None:intergenic | 35.0% | |
| CTATGACAAAACGGTCATAA+AGG | - | Chr8:71343074-71343093 | MsG0880046269.01.T01:CDS | 35.0% | |
| GAAGTAAGTAAAGTGGCTAA+TGG | - | Chr8:71344036-71344055 | MsG0880046269.01.T01:intron | 35.0% | |
| GATTTCCAAGTGATTCCATT+TGG | - | Chr8:71344322-71344341 | MsG0880046269.01.T01:intron | 35.0% | |
| ! | ACGAGTTTTCATCAATGCTT+GGG | - | Chr8:71344214-71344233 | MsG0880046269.01.T01:intron | 35.0% |
| ! | AGGTACTAGTAATGGAATTG+AGG | + | Chr8:71344142-71344161 | None:intergenic | 35.0% |
| ! | ATAATGTTTGAGACACCTCT+AGG | - | Chr8:71343786-71343805 | MsG0880046269.01.T01:intron | 35.0% |
| ! | CTTTATGACCGTTTTGTCAT+AGG | + | Chr8:71343076-71343095 | None:intergenic | 35.0% |
| ! | GGTACTAGTAATGGAATTGA+GGG | + | Chr8:71344141-71344160 | None:intergenic | 35.0% |
| ! | TTGGACATGTCTGAATCTTT+TGG | - | Chr8:71344456-71344475 | MsG0880046269.01.T01:intron | 35.0% |
| ! | TTGGCTTTCCTATGACAAAA+CGG | - | Chr8:71343065-71343084 | MsG0880046269.01.T01:CDS | 35.0% |
| AAGCCAAGTGATCTGTTCTT+TGG | + | Chr8:71343052-71343071 | None:intergenic | 40.0% | |
| ATATCTTGTCTGCTTTCTCG+AGG | + | Chr8:71344162-71344181 | None:intergenic | 40.0% | |
| ATGAGCAATCCCATCACAAT+AGG | - | Chr8:71343417-71343436 | MsG0880046269.01.T01:intron | 40.0% | |
| ATGTGTAGGATCTCTTGCAA+TGG | + | Chr8:71344240-71344259 | None:intergenic | 40.0% | |
| CTTGACGTACACTAATTAGC+CGG | - | Chr8:71343555-71343574 | MsG0880046269.01.T01:CDS | 40.0% | |
| GAACTACTCAAGAATCTCTC+AGG | + | Chr8:71344285-71344304 | None:intergenic | 40.0% | |
| GAATTGAGGGATGTAAACGT+AGG | + | Chr8:71344128-71344147 | None:intergenic | 40.0% | |
| GATCCAAAGAACAGATCACT+TGG | - | Chr8:71343046-71343065 | MsG0880046269.01.T01:CDS | 40.0% | |
| GGTCAATGACAGAACTCTTA+AGG | - | Chr8:71343983-71344002 | MsG0880046269.01.T01:intron | 40.0% | |
| TGCAAGAGATCCTACACATT+GGG | - | Chr8:71344241-71344260 | MsG0880046269.01.T01:intron | 40.0% | |
| TTGCAAGAGATCCTACACAT+TGG | - | Chr8:71344240-71344259 | MsG0880046269.01.T01:intron | 40.0% | |
| TTTAACTGGGAATTACCTGG+TGG | - | Chr8:71344423-71344442 | MsG0880046269.01.T01:intron | 40.0% | |
| ! | CACGAGTTTTCATCAATGCT+TGG | - | Chr8:71344213-71344232 | MsG0880046269.01.T01:intron | 40.0% |
| ! | CTTTCTCGAGGTACTAGTAA+TGG | + | Chr8:71344150-71344169 | None:intergenic | 40.0% |
| ! | GAGCTATATGTCGTCCTTTT+AGG | - | Chr8:71343623-71343642 | MsG0880046269.01.T01:intron | 40.0% |
| CAGCTCCAAATGGAATCACT+TGG | + | Chr8:71344330-71344349 | None:intergenic | 45.0% | |
| CATTGACCACTCTAGCAAAG+TGG | + | Chr8:71343971-71343990 | None:intergenic | 45.0% | |
| CCACTCTAGCAAAGTGGATA+TGG | + | Chr8:71343965-71343984 | None:intergenic | 45.0% | |
| CCATATCCACTTTGCTAGAG+TGG | - | Chr8:71343962-71343981 | MsG0880046269.01.T01:intron | 45.0% | |
| CGACATATAGCTCAACCCTT+AGG | + | Chr8:71343616-71343635 | None:intergenic | 45.0% | |
| ! | CAAGTGATTCCATTTGGAGC+TGG | - | Chr8:71344328-71344347 | MsG0880046269.01.T01:intron | 45.0% |
| ! | TCCATTTGGAGCTGGTAGAA+GGG | - | Chr8:71344336-71344355 | MsG0880046269.01.T01:intron | 45.0% |
| ! | TTCCATTTGGAGCTGGTAGA+AGG | - | Chr8:71344335-71344354 | MsG0880046269.01.T01:intron | 45.0% |
| !! | TCAGGTTGATCCCAATGTGT+AGG | + | Chr8:71344254-71344273 | None:intergenic | 45.0% |
| ATCTCTCAGGCTGAACTCTC+AGG | + | Chr8:71344272-71344291 | None:intergenic | 50.0% | |
| GGGGTTGCAATTGCCATAAG+AGG | + | Chr8:71344504-71344523 | None:intergenic | 50.0% | |
| ! | ACTCGTGTGCAGCTTTGATG+TGG | + | Chr8:71344200-71344219 | None:intergenic | 50.0% |
| ! | CCATTTGGAGCTGGTAGAAG+GGG | - | Chr8:71344337-71344356 | MsG0880046269.01.T01:intron | 50.0% |
| ! | GAATTACCTGGTGGTGCTGA+AGG | - | Chr8:71344432-71344451 | MsG0880046269.01.T01:intron | 50.0% |
| CCCCTTCTACCAGCTCCAAA+TGG | + | Chr8:71344340-71344359 | None:intergenic | 55.0% | |
| CTGGTAGAAGGGGTTGTCCT+GGG | - | Chr8:71344347-71344366 | MsG0880046269.01.T01:intron | 55.0% | |
| GTCCTGGGCAGTGTATGCTA+CGG | - | Chr8:71344362-71344381 | MsG0880046269.01.T01:intron | 55.0% | |
| TCCAATCCTTCAGCACCACC+AGG | + | Chr8:71344441-71344460 | None:intergenic | 55.0% | |
| ! | ACCTGGTGGTGCTGAAGGAT+TGG | - | Chr8:71344437-71344456 | MsG0880046269.01.T01:intron | 55.0% |
| AGCCGTAGCATACACTGCCC+AGG | + | Chr8:71344367-71344386 | None:intergenic | 60.0% | |
| GCTGGTAGAAGGGGTTGTCC+TGG | - | Chr8:71344346-71344365 | MsG0880046269.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 71343018 | 71344536 | 71343018 | ID=MsG0880046269.01;Name=MsG0880046269.01 |
| Chr8 | mRNA | 71343018 | 71344536 | 71343018 | ID=MsG0880046269.01.T01;Parent=MsG0880046269.01;Name=MsG0880046269.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|3|0|117 |
| Chr8 | exon | 71344468 | 71344536 | 71344468 | ID=MsG0880046269.01.T01:exon:15518;Parent=MsG0880046269.01.T01 |
| Chr8 | exon | 71343497 | 71343617 | 71343497 | ID=MsG0880046269.01.T01:exon:15517;Parent=MsG0880046269.01.T01 |
| Chr8 | exon | 71343018 | 71343181 | 71343018 | ID=MsG0880046269.01.T01:exon:15516;Parent=MsG0880046269.01.T01 |
| Chr8 | CDS | 71344468 | 71344536 | 71344468 | ID=MsG0880046269.01.T01:cds;Parent=MsG0880046269.01.T01 |
| Chr8 | CDS | 71343497 | 71343617 | 71343497 | ID=MsG0880046269.01.T01:cds;Parent=MsG0880046269.01.T01 |
| Chr8 | CDS | 71343018 | 71343181 | 71343018 | ID=MsG0880046269.01.T01:cds;Parent=MsG0880046269.01.T01 |
| Gene Sequence |
| Protein sequence |
