AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019434.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019434.01.T02 MTR_4g032220 92.197 346 26 1 1 345 2 347 0.0 607
MsG0480019434.01.T02 MTR_4g032240 86.455 347 45 1 1 345 2 348 0.0 592
MsG0480019434.01.T02 MTR_4g032300 68.481 349 97 4 1 345 1 340 9.94e-169 473
MsG0480019434.01.T02 MTR_4g032350 70.336 327 91 1 8 334 10 330 7.48e-164 462
MsG0480019434.01.T02 MTR_4g032330 64.179 67 23 1 280 345 17 83 7.29e-17 75.1
MsG0480019434.01.T01 MTR_4g032220 92.197 346 26 1 1 345 2 347 0.0 607
MsG0480019434.01.T01 MTR_4g032240 86.455 347 45 1 1 345 2 348 0.0 592
MsG0480019434.01.T01 MTR_4g032300 68.481 349 97 4 1 345 1 340 9.94e-169 473
MsG0480019434.01.T01 MTR_4g032350 70.336 327 91 1 8 334 10 330 7.48e-164 462
MsG0480019434.01.T01 MTR_4g032330 64.179 67 23 1 280 345 17 83 7.29e-17 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019434.01.T02 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T02 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T02 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T02 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T02 AT1G33970 57.500 280 109 2 1 280 6 275 5.91e-105 309
MsG0480019434.01.T02 AT1G33960 50.000 318 146 5 8 313 15 331 6.83e-91 276
MsG0480019434.01.T02 AT1G33960 50.000 318 146 5 8 313 39 355 1.92e-90 276
MsG0480019434.01.T02 AT1G33950 48.571 280 143 1 16 295 4 282 7.66e-90 272
MsG0480019434.01.T02 AT1G33930 46.939 294 149 2 8 295 9 301 1.53e-88 270
MsG0480019434.01.T02 AT1G33900 46.259 294 149 3 24 316 14 299 1.80e-88 269
MsG0480019434.01.T02 AT4G09940 45.141 319 165 7 12 323 27 342 6.58e-88 270
MsG0480019434.01.T02 AT4G09940 45.141 319 165 7 12 323 70 385 5.53e-87 269
MsG0480019434.01.T02 AT1G33950 48.214 280 138 3 16 295 4 276 7.13e-84 256
MsG0480019434.01.T02 AT4G09950 43.881 335 180 6 16 345 5 336 2.01e-82 254
MsG0480019434.01.T02 AT2G26820 47.687 281 138 4 29 306 6 280 1.87e-79 247
MsG0480019434.01.T02 AT2G26820 47.687 281 138 4 29 306 6 280 5.60e-79 246
MsG0480019434.01.T02 AT2G26820 45.048 313 162 5 29 337 6 312 1.54e-78 248
MsG0480019434.01.T02 AT2G26820 47.687 281 138 4 29 306 6 280 1.45e-77 246
MsG0480019434.01.T02 AT4G09930 41.210 347 190 7 1 345 1 335 2.11e-75 236
MsG0480019434.01.T02 AT1G33910 46.739 276 138 4 22 295 6 274 4.54e-75 234
MsG0480019434.01.T02 AT1G33890 44.403 268 147 2 22 288 6 272 1.18e-72 229
MsG0480019434.01.T02 AT1G33890 44.403 268 147 2 22 288 6 272 1.18e-72 229
MsG0480019434.01.T02 AT1G33830 51.196 209 102 0 31 239 11 219 6.13e-70 218
MsG0480019434.01.T02 AT1G33870 43.775 249 138 1 53 301 1 247 4.22e-68 214
MsG0480019434.01.T02 AT1G33880 42.029 207 114 2 28 234 23 223 1.66e-55 181
MsG0480019434.01.T02 AT1G33880 42.029 207 114 2 28 234 23 223 1.66e-55 181
MsG0480019434.01.T02 AT4G09950 41.111 270 151 6 81 345 7 273 2.36e-54 179
MsG0480019434.01.T01 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T01 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T01 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T01 AT1G33970 56.560 343 136 3 1 340 6 338 2.13e-125 363
MsG0480019434.01.T01 AT1G33970 57.500 280 109 2 1 280 6 275 5.91e-105 309
MsG0480019434.01.T01 AT1G33960 50.000 318 146 5 8 313 15 331 6.83e-91 276
MsG0480019434.01.T01 AT1G33960 50.000 318 146 5 8 313 39 355 1.92e-90 276
MsG0480019434.01.T01 AT1G33950 48.571 280 143 1 16 295 4 282 7.66e-90 272
MsG0480019434.01.T01 AT1G33930 46.939 294 149 2 8 295 9 301 1.53e-88 270
MsG0480019434.01.T01 AT1G33900 46.259 294 149 3 24 316 14 299 1.80e-88 269
MsG0480019434.01.T01 AT4G09940 45.141 319 165 7 12 323 27 342 6.58e-88 270
MsG0480019434.01.T01 AT4G09940 45.141 319 165 7 12 323 70 385 5.53e-87 269
MsG0480019434.01.T01 AT1G33950 48.214 280 138 3 16 295 4 276 7.13e-84 256
MsG0480019434.01.T01 AT4G09950 43.881 335 180 6 16 345 5 336 2.01e-82 254
MsG0480019434.01.T01 AT2G26820 47.687 281 138 4 29 306 6 280 1.87e-79 247
MsG0480019434.01.T01 AT2G26820 47.687 281 138 4 29 306 6 280 5.60e-79 246
MsG0480019434.01.T01 AT2G26820 45.048 313 162 5 29 337 6 312 1.54e-78 248
MsG0480019434.01.T01 AT2G26820 47.687 281 138 4 29 306 6 280 1.45e-77 246
MsG0480019434.01.T01 AT4G09930 41.210 347 190 7 1 345 1 335 2.11e-75 236
MsG0480019434.01.T01 AT1G33910 46.739 276 138 4 22 295 6 274 4.54e-75 234
MsG0480019434.01.T01 AT1G33890 44.403 268 147 2 22 288 6 272 1.18e-72 229
MsG0480019434.01.T01 AT1G33890 44.403 268 147 2 22 288 6 272 1.18e-72 229
MsG0480019434.01.T01 AT1G33830 51.196 209 102 0 31 239 11 219 6.13e-70 218
MsG0480019434.01.T01 AT1G33870 43.775 249 138 1 53 301 1 247 4.22e-68 214
MsG0480019434.01.T01 AT1G33880 42.029 207 114 2 28 234 23 223 1.66e-55 181
MsG0480019434.01.T01 AT1G33880 42.029 207 114 2 28 234 23 223 1.66e-55 181
MsG0480019434.01.T01 AT4G09950 41.111 270 151 6 81 345 7 273 2.36e-54 179

Find 13 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTGCGATTTGCGATTC+TGG 0.147690 4:+20289920 MsG0480019434.01.T01:five_prime_UTR
TTTGTTCATTCTCTTTGTTC+AGG 0.255880 4:+20289954 MsG0480019434.01.T01:five_prime_UTR
GAAAATTCAGTAATTTGAAC+AGG 0.403690 4:+20289740 MsG0480019434.01.T01:five_prime_UTR
AGTAATTTGAACAGGAGAAA+AGG 0.444493 4:+20289748 MsG0480019434.01.T01:five_prime_UTR
AAGCACAAGAATATAAGAAC+AGG 0.448669 4:+20289795 MsG0480019434.01.T01:five_prime_UTR
CAAAATCAAAATCGCCGTTA+CGG 0.455989 4:+20289683 MsG0480019434.01.T01:five_prime_UTR
AATATAAGAACAGGAGAAGA+AGG 0.460309 4:+20289804 MsG0480019434.01.T01:five_prime_UTR
AGATTGAGATTTGAGATGCC+TGG 0.524099 4:-20289849 None:intergenic
CAGAATCGCAAATCGCAAGC+AGG 0.561964 4:-20289919 None:intergenic
CAAATCGCAAGCAGGAAGGA+AGG 0.584416 4:-20289911 None:intergenic
AGTCTGAACGGAGTTCGTAA+CGG 0.619262 4:-20289716 None:intergenic
ATCGCAAATCGCAAGCAGGA+AGG 0.626390 4:-20289915 None:intergenic
ACGGTGTTTCGCAGCCGTAA+CGG 0.643060 4:-20289697 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATTTAAGAGTTTA+AGG + Chr4:20295110-20295129 MsG0480019434.01.T01:intron 10.0%
!! TTTAAACATGTTATAATTAT+GGG + Chr4:20290316-20290335 MsG0480019434.01.T01:intron 10.0%
!! TTTAATAAGGAAAATAATTA+TGG + Chr4:20294203-20294222 MsG0480019434.01.T01:intron 10.0%
!!! AAGTAAATTTTTTTTTTTGT+AGG + Chr4:20295173-20295192 MsG0480019434.01.T01:intron 10.0%
!!! AATTAATAATTACTTTTAGA+TGG + Chr4:20290109-20290128 MsG0480019434.01.T01:intron 10.0%
!!! AATTATTAATTTTTCTATAG+AGG - Chr4:20293129-20293148 None:intergenic 10.0%
!!! AGTAAATTTTTTTTTTTGTA+GGG + Chr4:20295174-20295193 MsG0480019434.01.T01:intron 10.0%
!!! TTTTAAACATGTTATAATTA+TGG + Chr4:20290315-20290334 MsG0480019434.01.T01:intron 10.0%
!! AAAGCTATTAAAATTAAGTA+AGG + Chr4:20295203-20295222 MsG0480019434.01.T01:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG - Chr4:20294859-20294878 None:intergenic 15.0%
!! AATGAAAAAAAAATAATCCA+TGG - Chr4:20292537-20292556 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - Chr4:20294787-20294806 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - Chr4:20294979-20294998 None:intergenic 15.0%
!! GTATTAATACTCTTAATAAA+AGG + Chr4:20292622-20292641 MsG0480019434.01.T01:intron 15.0%
!! TAACAAAATTAATTCACTTT+GGG + Chr4:20294517-20294536 MsG0480019434.01.T01:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + Chr4:20295139-20295158 MsG0480019434.01.T01:intron 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - Chr4:20294944-20294963 None:intergenic 15.0%
!!! AATTTTTTCCAGATAAAATA+AGG - Chr4:20292967-20292986 None:intergenic 15.0%
!!! ACCAAAATTTGTTAAATTAA+AGG - Chr4:20290812-20290831 None:intergenic 15.0%
!!! ATTCAATTTTCACATTAATT+AGG - Chr4:20294494-20294513 None:intergenic 15.0%
!!! GTTTTAGATTTTATCAAAAA+AGG + Chr4:20295375-20295394 MsG0480019434.01.T01:intron 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + Chr4:20295138-20295157 MsG0480019434.01.T01:intron 15.0%
!!! TAAATTATCTCAATTTTTAC+CGG + Chr4:20291301-20291320 MsG0480019434.01.T01:intron 15.0%
!!! TAATTTTGTTGATCTTTAAT+TGG + Chr4:20293144-20293163 MsG0480019434.01.T01:intron 15.0%
!!! TATTTTATCTGGAAAAAATT+AGG + Chr4:20292967-20292986 MsG0480019434.01.T01:intron 15.0%
!!! TGCAATTTAATTTTAAACTT+GGG - Chr4:20295277-20295296 None:intergenic 15.0%
!!! TGGTTAATTTTGTTATTTAT+TGG + Chr4:20290828-20290847 MsG0480019434.01.T01:intron 15.0%
!!! TTATTTTCCTTATTAAAAGT+TGG - Chr4:20294200-20294219 None:intergenic 15.0%
!!! TTCTTAATTTATTTTTGCTT+GGG + Chr4:20289074-20289093 MsG0480019434.01.T02:five_prime_UTR 15.0%
!!! TTCTTTTTGAAAAAGTTTAA+AGG + Chr4:20291749-20291768 MsG0480019434.01.T01:intron 15.0%
!!! TTGCAATTTAATTTTAAACT+TGG - Chr4:20295278-20295297 None:intergenic 15.0%
!!! TTTCTTAATTTATTTTTGCT+TGG + Chr4:20289073-20289092 MsG0480019434.01.T02:five_prime_UTR 15.0%
!!! TTTTTCAACAATTTTTTTAC+AGG + Chr4:20294890-20294909 MsG0480019434.01.T01:intron 15.0%
!!! TTTTTTTTTTTGAGTGAATA+AGG + Chr4:20290002-20290021 MsG0480019434.01.T01:intron 15.0%
!! AAAAAACATATATCACAAAG+GGG - Chr4:20292746-20292765 None:intergenic 20.0%
!! AATAAGGAAAATAATTATGG+AGG + Chr4:20294206-20294225 MsG0480019434.01.T01:intron 20.0%
!! AGAAAAAACATATATCACAA+AGG - Chr4:20292748-20292767 None:intergenic 20.0%
!! ATAAAATGCACAAAATTTGA+AGG + Chr4:20293988-20294007 MsG0480019434.01.T01:intron 20.0%
!! ATAAGGAAAATAATTATGGA+GGG + Chr4:20294207-20294226 MsG0480019434.01.T01:intron 20.0%
!! ATTTGAACATCAAAGTTTAA+AGG + Chr4:20294712-20294731 MsG0480019434.01.T01:intron 20.0%
!! CAATATCAGTAATTAAGTAA+GGG + Chr4:20293865-20293884 MsG0480019434.01.T01:intron 20.0%
!! CTAACAAAATTAATTCACTT+TGG + Chr4:20294516-20294535 MsG0480019434.01.T01:intron 20.0%
!! GAAAAAACATATATCACAAA+GGG - Chr4:20292747-20292766 None:intergenic 20.0%
!! TAACTTTCTCAAATTATCAT+CGG + Chr4:20289536-20289555 MsG0480019434.01.T02:intron 20.0%
!! TCAATATCAGTAATTAAGTA+AGG + Chr4:20293864-20293883 MsG0480019434.01.T01:intron 20.0%
!! TTATAAGCTTGAACTTTATT+TGG + Chr4:20295511-20295530 MsG0480019434.01.T01:intron 20.0%
!! TTCATATATTTATTGCAGAA+AGG + Chr4:20293417-20293436 MsG0480019434.01.T01:intron 20.0%
!! TTTGAACATCAAAGTTTAAA+GGG + Chr4:20294713-20294732 MsG0480019434.01.T01:intron 20.0%
!! TTTGTGTTTGATCAATTATA+TGG + Chr4:20295612-20295631 MsG0480019434.01.T01:intron 20.0%
!!! AATAAGATTTTGTTGTTGTT+AGG - Chr4:20290649-20290668 None:intergenic 20.0%
!!! AATTTTCACATTAATTAGGA+AGG - Chr4:20294490-20294509 None:intergenic 20.0%
!!! ATATGAAAATTTCAAGTATC+AGG - Chr4:20290608-20290627 None:intergenic 20.0%
!!! CCTTTGATAATAAAAATCAT+CGG - Chr4:20291667-20291686 None:intergenic 20.0%
!!! CTATTTCTTTTTTTATTCCA+TGG + Chr4:20292517-20292536 MsG0480019434.01.T01:intron 20.0%
!!! GATTTGTTTAAATTTTCTTC+CGG + Chr4:20295872-20295891 MsG0480019434.01.T01:three_prime_UTR 20.0%
!!! GCCTTTAATTTAACAAATTT+TGG + Chr4:20290808-20290827 MsG0480019434.01.T01:intron 20.0%
!!! TAAAGGGTTAATTATGTTTT+TGG + Chr4:20294729-20294748 MsG0480019434.01.T01:intron 20.0%
!!! TATATTCTTTTTCCATTTCA+TGG + Chr4:20294074-20294093 MsG0480019434.01.T01:intron 20.0%
!!! TCTTGATTCAACAATTTTTT+TGG + Chr4:20289404-20289423 MsG0480019434.01.T02:intron 20.0%
!!! TGGTTTAGTTTCTTAATTAT+TGG + Chr4:20289424-20289443 MsG0480019434.01.T02:intron 20.0%
!!! TTAATTTCTTTTCAGTGATT+TGG + Chr4:20290948-20290967 MsG0480019434.01.T01:intron 20.0%
!!! TTAGATTTTATCAAAAAAGG+AGG + Chr4:20295378-20295397 MsG0480019434.01.T01:intron 20.0%
!!! TTTGTGATATATGTTTTTTC+TGG + Chr4:20292747-20292766 MsG0480019434.01.T01:intron 20.0%
! AAACAAATTTGGATTGAGTA+AGG - Chr4:20294848-20294867 None:intergenic 25.0%
! AAGATACTGCTTCTAAATAA+CGG - Chr4:20290531-20290550 None:intergenic 25.0%
! ACATATTGAAATGTGCATTA+GGG + Chr4:20294577-20294596 MsG0480019434.01.T01:intron 25.0%
! ATAAATACCTTCAAAGATTC+TGG - Chr4:20292473-20292492 None:intergenic 25.0%
! ATAAATTGTCAAACCTAGTT+TGG + Chr4:20294396-20294415 MsG0480019434.01.T01:intron 25.0%
! ATCAAACACAAAAATACTAG+GGG - Chr4:20295604-20295623 None:intergenic 25.0%
! ATGCCAAGAATATTATTCTA+GGG - Chr4:20291813-20291832 None:intergenic 25.0%
! CAACAAAAAGTTACTATGTT+GGG - Chr4:20293929-20293948 None:intergenic 25.0%
! CCTTGTGAATAAAAACAAAA+AGG - Chr4:20292050-20292069 None:intergenic 25.0%
! GAAAATTCAGTAATTTGAAC+AGG + Chr4:20289740-20289759 MsG0480019434.01.T01:five_prime_UTR 25.0%
! GATCAAACACAAAAATACTA+GGG - Chr4:20295605-20295624 None:intergenic 25.0%
! GTCATGAGAATATTATTTAG+AGG - Chr4:20295545-20295564 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + Chr4:20294914-20294933 MsG0480019434.01.T01:intron 25.0%
! TAACTCATATTACAAACTCA+TGG - Chr4:20294647-20294666 None:intergenic 25.0%
! TAATAGTATTCTTGGGAAAA+AGG + Chr4:20291112-20291131 MsG0480019434.01.T01:CDS 25.0%
! TATGATGACACTAATCAATA+TGG - Chr4:20290904-20290923 None:intergenic 25.0%
! TCTTCTATCTTGTAATCTTA+TGG + Chr4:20292886-20292905 MsG0480019434.01.T01:intron 25.0%
! TGAGTTATTTGCAAAACTAA+AGG + Chr4:20293327-20293346 MsG0480019434.01.T01:CDS 25.0%
! TGATCAAACACAAAAATACT+AGG - Chr4:20295606-20295625 None:intergenic 25.0%
! TGTTTGCATGTTGTTATAAT+TGG + Chr4:20293037-20293056 MsG0480019434.01.T01:intron 25.0%
! TTAGTGATTCGTATCAATAA+AGG - Chr4:20292685-20292704 None:intergenic 25.0%
!! ACTTGGGTTAAATATGTTTT+TGG - Chr4:20295261-20295280 None:intergenic 25.0%
!! ATAATCCTGTAAAACTTTTC+AGG - Chr4:20292193-20292212 None:intergenic 25.0%
!! CCGATGATTTTTATTATCAA+AGG + Chr4:20291664-20291683 MsG0480019434.01.T01:intron 25.0%
!! CTATCTTGTTTCTTTAATCT+TGG + Chr4:20293371-20293390 MsG0480019434.01.T01:intron 25.0%
!! GATTTTTATTATCAAAGGAG+AGG + Chr4:20291669-20291688 MsG0480019434.01.T01:intron 25.0%
!! TAAAGTAGATTTTGTGAGAT+GGG + Chr4:20291704-20291723 MsG0480019434.01.T01:intron 25.0%
!! TCATCTCTTATTTAAGTTCA+AGG + Chr4:20290186-20290205 MsG0480019434.01.T01:intron 25.0%
!! TTTAACCTGAAAAGTTTTAC+AGG + Chr4:20292185-20292204 MsG0480019434.01.T01:intron 25.0%
!! TTTTCCAGATAAAATAAGGA+AGG - Chr4:20292963-20292982 None:intergenic 25.0%
!!! AAAATCTTATTTCTGTAGCA+TGG + Chr4:20290658-20290677 MsG0480019434.01.T01:intron 25.0%
!!! CCTTTTTGTTTTTATTCACA+AGG + Chr4:20292047-20292066 MsG0480019434.01.T01:intron 25.0%
!!! GAAGGAATATTTCTACTTTT+AGG + Chr4:20294006-20294025 MsG0480019434.01.T01:intron 25.0%
!!! GAGTGTAGAATTTTTTTGTA+GGG - Chr4:20294816-20294835 None:intergenic 25.0%
!!! TGAGTGTAGAATTTTTTTGT+AGG - Chr4:20294817-20294836 None:intergenic 25.0%
!!! TGTTTCCATTTTTGTATGTA+CGG + Chr4:20294173-20294192 MsG0480019434.01.T01:intron 25.0%
AAACGATGATGATCAATGAT+TGG - Chr4:20289176-20289195 None:intergenic 30.0%
AAATACGAGAGAAAAATGAC+AGG - Chr4:20292933-20292952 None:intergenic 30.0%
AAATCTCCAAATGGTTCAAA+TGG - Chr4:20292799-20292818 None:intergenic 30.0%
AAATTAAAGGCTCTTAAGCA+CGG - Chr4:20290799-20290818 None:intergenic 30.0%
AAATTCCCATTTGAACCATT+TGG + Chr4:20292790-20292809 MsG0480019434.01.T01:intron 30.0%
AACATGACCCATTAAGTAAT+GGG + Chr4:20294047-20294066 MsG0480019434.01.T01:intron 30.0%
AAGCACAAGAATATAAGAAC+AGG + Chr4:20289795-20289814 MsG0480019434.01.T01:five_prime_UTR 30.0%
AAGCTATGTTGAAGATGATT+GGG + Chr4:20290986-20291005 MsG0480019434.01.T01:CDS 30.0%
AAGTAAGGACTAAACTTACA+AGG - Chr4:20294772-20294791 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + Chr4:20295218-20295237 MsG0480019434.01.T01:intron 30.0%
AATACGAGAGAAAAATGACA+GGG - Chr4:20292932-20292951 None:intergenic 30.0%
AATATAAGAACAGGAGAAGA+AGG + Chr4:20289804-20289823 MsG0480019434.01.T01:five_prime_UTR 30.0%
AATATGTCTTCTTACGCATT+TGG + Chr4:20292703-20292722 MsG0480019434.01.T01:intron 30.0%
AATCTCCAAATGGTTCAAAT+GGG - Chr4:20292798-20292817 None:intergenic 30.0%
AGTAATTTGAACAGGAGAAA+AGG + Chr4:20289748-20289767 MsG0480019434.01.T01:five_prime_UTR 30.0%
AGTTATGAAAACTGCAAGTT+GGG + Chr4:20294662-20294681 MsG0480019434.01.T01:intron 30.0%
ATCTCATTGTTTAATCCTTG+TGG - Chr4:20294239-20294258 None:intergenic 30.0%
ATGCCCTAGAATAATATTCT+TGG + Chr4:20291807-20291826 MsG0480019434.01.T01:intron 30.0%
ATGTCTGTTACAAATTCACA+AGG - Chr4:20294116-20294135 None:intergenic 30.0%
ATTAGTCGAGTTTAAACTGA+GGG + Chr4:20291525-20291544 MsG0480019434.01.T01:intron 30.0%
CAATCAAAATAAGTGTTCAG+TGG - Chr4:20295948-20295967 None:intergenic 30.0%
CATCTTGATCATAAATCTCA+AGG + Chr4:20294424-20294443 MsG0480019434.01.T01:intron 30.0%
CATGCCAAGAATATTATTCT+AGG - Chr4:20291814-20291833 None:intergenic 30.0%
CCAACAAAAAGTTACTATGT+TGG - Chr4:20293930-20293949 None:intergenic 30.0%
GAAAAAGGTCTTTAAGTCTA+GGG + Chr4:20291127-20291146 MsG0480019434.01.T01:CDS 30.0%
GACATATTGAAATGTGCATT+AGG + Chr4:20294576-20294595 MsG0480019434.01.T01:intron 30.0%
GCAAATAACTCATCTGTATA+AGG - Chr4:20293319-20293338 None:intergenic 30.0%
GCAATCAAGATTTCATAATC+CGG - Chr4:20295894-20295913 None:intergenic 30.0%
GCTAAAACATATTACTGAGA+TGG + Chr4:20293548-20293567 MsG0480019434.01.T01:CDS 30.0%
GTTATTTGCAAAACTAAAGG+TGG + Chr4:20293330-20293349 MsG0480019434.01.T01:intron 30.0%
TAAAAGATGATGTAGCTAAG+AGG - Chr4:20289206-20289225 None:intergenic 30.0%
TAACATGACCCATTAAGTAA+TGG + Chr4:20294046-20294065 MsG0480019434.01.T01:intron 30.0%
TACAATACACCAAATATGGT+GGG + Chr4:20291975-20291994 MsG0480019434.01.T01:intron 30.0%
TATATACATGCATTACTGCA+TGG + Chr4:20293693-20293712 MsG0480019434.01.T01:intron 30.0%
TCTTGTGTAAAAACATGGTA+AGG + Chr4:20291947-20291966 MsG0480019434.01.T01:intron 30.0%
TGATTCGTATCAATAAAGGA+GGG - Chr4:20292681-20292700 None:intergenic 30.0%
TTAAAACAGTGATACACAGA+AGG + Chr4:20292817-20292836 MsG0480019434.01.T01:intron 30.0%
TTAAAGGAGCTTTACAGATT+TGG + Chr4:20291765-20291784 MsG0480019434.01.T01:intron 30.0%
TTATTATCAAAGGAGAGGTT+GGG + Chr4:20291674-20291693 MsG0480019434.01.T01:intron 30.0%
TTCCTTATCTTATGCCTTAA+GGG - Chr4:20293906-20293925 None:intergenic 30.0%
TTGAAAGTAATCACATGTGT+CGG - Chr4:20289511-20289530 None:intergenic 30.0%
TTTATTATCAAAGGAGAGGT+TGG + Chr4:20291673-20291692 MsG0480019434.01.T01:intron 30.0%
TTTCCCAAGAATACTATTAC+CGG - Chr4:20291111-20291130 None:intergenic 30.0%
TTTGTTCATTCTCTTTGTTC+AGG + Chr4:20289954-20289973 MsG0480019434.01.T01:five_prime_UTR 30.0%
! AAACAATGTTCGAACTTTTG+AGG + Chr4:20291421-20291440 MsG0480019434.01.T01:intron 30.0%
! AACAATGTTCGAACTTTTGA+GGG + Chr4:20291422-20291441 MsG0480019434.01.T01:intron 30.0%
! AACTTGATAGTATCACAGAA+TGG + Chr4:20293286-20293305 MsG0480019434.01.T01:CDS 30.0%
! CAAGTTTAGAACACTATGAA+AGG - Chr4:20295076-20295095 None:intergenic 30.0%
! CCAACATAGTAACTTTTTGT+TGG + Chr4:20293927-20293946 MsG0480019434.01.T01:intron 30.0%
! GATTGTTGACTATATGATTG+TGG + Chr4:20292379-20292398 MsG0480019434.01.T01:CDS 30.0%
! GCTTGAGTATCTAGAATTAT+AGG + Chr4:20293086-20293105 MsG0480019434.01.T01:intron 30.0%
! GTAAAGTAGATTTTGTGAGA+TGG + Chr4:20291703-20291722 MsG0480019434.01.T01:intron 30.0%
! GTATTTCTCGACTCTTTTTA+GGG + Chr4:20289346-20289365 MsG0480019434.01.T02:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + Chr4:20295234-20295253 MsG0480019434.01.T01:intron 30.0%
! TCATTGCTGTTAGCTATTAT+TGG + Chr4:20293794-20293813 MsG0480019434.01.T01:intron 30.0%
! TGAATCTTATCTTTTGTACC+AGG + Chr4:20289831-20289850 MsG0480019434.01.T01:five_prime_UTR 30.0%
! TGTATTTCTCGACTCTTTTT+AGG + Chr4:20289345-20289364 MsG0480019434.01.T02:intron 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + Chr4:20295233-20295252 MsG0480019434.01.T01:intron 30.0%
! TTCTTTTGAATGTTCTTCCA+AGG - Chr4:20293481-20293500 None:intergenic 30.0%
! TTTTCCATTTCATGGTTCAT+AGG + Chr4:20294082-20294101 MsG0480019434.01.T01:intron 30.0%
!! ATTCACAAGGATTGATTTGA+GGG + Chr4:20291851-20291870 MsG0480019434.01.T01:intron 30.0%
!! CAAACTTTTCAAGAAGTAGA+AGG - Chr4:20292159-20292178 None:intergenic 30.0%
!! CACTGTTTTAAATCTCCAAA+TGG - Chr4:20292808-20292827 None:intergenic 30.0%
!! GAATAAGGTTTGTTATCACT+TGG + Chr4:20290017-20290036 MsG0480019434.01.T01:intron 30.0%
!! TTACCATGTTTTTACACAAG+AGG - Chr4:20291948-20291967 None:intergenic 30.0%
!!! AATGCCTTCCTTATTTTATC+TGG + Chr4:20292956-20292975 MsG0480019434.01.T01:intron 30.0%
!!! ACTGAATTTTCAAGTCTGAA+CGG - Chr4:20289731-20289750 None:intergenic 30.0%
!!! ATTCTTGGCATGATGTTTTT+TGG + Chr4:20291822-20291841 MsG0480019434.01.T01:intron 30.0%
!!! CGAACATTGTTTTATTTCCA+GGG - Chr4:20291413-20291432 None:intergenic 30.0%
!!! TCGAACATTGTTTTATTTCC+AGG - Chr4:20291414-20291433 None:intergenic 30.0%
!!! TTCTACTTTTAGGTTCCTTA+GGG + Chr4:20294016-20294035 MsG0480019434.01.T01:intron 30.0%
!!! TTTCTACTTTTAGGTTCCTT+AGG + Chr4:20294015-20294034 MsG0480019434.01.T01:intron 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - Chr4:20294941-20294960 None:intergenic 30.0%
!!! TTTTTGGAATGTCATTCACA+AGG + Chr4:20291838-20291857 MsG0480019434.01.T01:intron 30.0%
AAGAGCAAAACAACCAAGAA+AGG - Chr4:20292870-20292889 None:intergenic 35.0%
AATTTACTTCTCCTGCTAAG+AGG - Chr4:20295425-20295444 None:intergenic 35.0%
ACGATGAAATACGAGAACTA+AGG + Chr4:20295755-20295774 MsG0480019434.01.T01:CDS 35.0%
AGATTTCAGCTAATGAAGCT+CGG + Chr4:20291042-20291061 MsG0480019434.01.T01:CDS 35.0%
AGGACAAATGAACTCTATGT+AGG + Chr4:20292837-20292856 MsG0480019434.01.T01:intron 35.0%
AGGTAAATACAAGCCAACTT+AGG + Chr4:20291235-20291254 MsG0480019434.01.T01:intron 35.0%
ATACGAGAGAAAAATGACAG+GGG - Chr4:20292931-20292950 None:intergenic 35.0%
ATAGTCGCCCATTACTTAAT+GGG - Chr4:20294057-20294076 None:intergenic 35.0%
ATCATCTCCTTTGTGTGTAA+AGG - Chr4:20291591-20291610 None:intergenic 35.0%
ATCTAACAGATAACACCACA+AGG - Chr4:20292298-20292317 None:intergenic 35.0%
ATGTCACACCATACCATAAA+TGG - Chr4:20294561-20294580 None:intergenic 35.0%
ATTTACTTCTCCTGCTAAGA+GGG - Chr4:20295424-20295443 None:intergenic 35.0%
ATTTGCAAAACTAAAGGTGG+AGG + Chr4:20293333-20293352 MsG0480019434.01.T01:intron 35.0%
CAAAATCAAAATCGCCGTTA+CGG + Chr4:20289683-20289702 MsG0480019434.01.T01:five_prime_UTR 35.0%
CAACCGGTAATAGTATTCTT+GGG + Chr4:20291105-20291124 MsG0480019434.01.T01:CDS 35.0%
CACATTAATTAGGAAGGAGT+TGG - Chr4:20294484-20294503 None:intergenic 35.0%
CAGCAATGAATGCAACTAAT+TGG - Chr4:20293783-20293802 None:intergenic 35.0%
CATAACTCATTCAAAGCCAT+AGG - Chr4:20292103-20292122 None:intergenic 35.0%
CATCCTACAAAACACAGATA+TGG - Chr4:20291485-20291504 None:intergenic 35.0%
CTATATGATTGTGGTCTTCA+CGG + Chr4:20292388-20292407 MsG0480019434.01.T01:CDS 35.0%
CTTTCTCAAATTATCATCGG+CGG + Chr4:20289539-20289558 MsG0480019434.01.T02:intron 35.0%
GAAGCTATGTTGAAGATGAT+TGG + Chr4:20290985-20291004 MsG0480019434.01.T01:CDS 35.0%
GAGTTATGAAAACTGCAAGT+TGG + Chr4:20294661-20294680 MsG0480019434.01.T01:intron 35.0%
GATACACTTGACGACTATTT+AGG + Chr4:20292437-20292456 MsG0480019434.01.T01:CDS 35.0%
GCAAGTAGATCTTGATCAAT+TGG + Chr4:20294366-20294385 MsG0480019434.01.T01:intron 35.0%
GGAAAAAGGTCTTTAAGTCT+AGG + Chr4:20291126-20291145 MsG0480019434.01.T01:CDS 35.0%
GTACAATACACCAAATATGG+TGG + Chr4:20291974-20291993 MsG0480019434.01.T01:intron 35.0%
GTAGATTGAGTCAAAGTTGA+AGG + Chr4:20295639-20295658 MsG0480019434.01.T01:intron 35.0%
GTGATTCGTATCAATAAAGG+AGG - Chr4:20292682-20292701 None:intergenic 35.0%
GTTCCTTATCTTATGCCTTA+AGG - Chr4:20293907-20293926 None:intergenic 35.0%
TAAAAACAAAAAGGCCAACC+CGG - Chr4:20292041-20292060 None:intergenic 35.0%
TAGGTAGGGGAAATTGTATT+GGG + Chr4:20294309-20294328 MsG0480019434.01.T01:intron 35.0%
TAGTAACTAGCTACGAATCA+AGG - Chr4:20290576-20290595 None:intergenic 35.0%
TATAGTCGCCCATTACTTAA+TGG - Chr4:20294058-20294077 None:intergenic 35.0%
TATATGATTGTGGTCTTCAC+GGG + Chr4:20292389-20292408 MsG0480019434.01.T01:CDS 35.0%
TCAAAACCCTTTACACACAA+AGG + Chr4:20291581-20291600 MsG0480019434.01.T01:intron 35.0%
TCATCTCCTTTGTGTGTAAA+GGG - Chr4:20291590-20291609 None:intergenic 35.0%
TCTCTTTGACAACAAGACTA+AGG + Chr4:20293216-20293235 MsG0480019434.01.T01:CDS 35.0%
TGAATGTCCAGAATCTTTGA+AGG + Chr4:20292463-20292482 MsG0480019434.01.T01:CDS 35.0%
TGCGTACAATACACCAAATA+TGG + Chr4:20291971-20291990 MsG0480019434.01.T01:intron 35.0%
TGGGAATGAAATTTGATGTG+TGG + Chr4:20291723-20291742 MsG0480019434.01.T01:intron 35.0%
TGTCACACCATACCATAAAT+GGG - Chr4:20294560-20294579 None:intergenic 35.0%
TGTTAGATCACGATTTAGTG+AGG + Chr4:20292310-20292329 MsG0480019434.01.T01:CDS 35.0%
TGTTGAAGATGATTGGGAAT+TGG + Chr4:20290992-20291011 MsG0480019434.01.T01:CDS 35.0%
TTACAAATTCACAAGGCCAT+TGG - Chr4:20294109-20294128 None:intergenic 35.0%
TTAGTCGAGTTTAAACTGAG+GGG + Chr4:20291526-20291545 MsG0480019434.01.T01:intron 35.0%
TTCAAAAAACGAACCTGTAC+CGG + Chr4:20289582-20289601 MsG0480019434.01.T02:intron 35.0%
TTGGTCCGTACATACAAAAA+TGG - Chr4:20294181-20294200 None:intergenic 35.0%
! AGTGATTTGGATTTGTGATG+GGG + Chr4:20290961-20290980 MsG0480019434.01.T01:intron 35.0%
! CAGTGATTTGGATTTGTGAT+GGG + Chr4:20290960-20290979 MsG0480019434.01.T01:intron 35.0%
! GATTAGTCGAGTTTAAACTG+AGG + Chr4:20291524-20291543 MsG0480019434.01.T01:intron 35.0%
! GCAAAGAAAGATTGATTCCT+TGG + Chr4:20293461-20293480 MsG0480019434.01.T01:CDS 35.0%
! GGATTATTTGAAGTTTCTGC+TGG + Chr4:20292206-20292225 MsG0480019434.01.T01:intron 35.0%
! GTACGGACCAACTTTTAATA+AGG + Chr4:20294190-20294209 MsG0480019434.01.T01:intron 35.0%
! GTCTTTTTGCATCGCTATAT+CGG + Chr4:20289289-20289308 MsG0480019434.01.T02:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - Chr4:20294756-20294775 None:intergenic 35.0%
! TCAGTGATTTGGATTTGTGA+TGG + Chr4:20290959-20290978 MsG0480019434.01.T01:intron 35.0%
! TGTCCATATCTGTGTTTTGT+AGG + Chr4:20291479-20291498 MsG0480019434.01.T01:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - Chr4:20294757-20294776 None:intergenic 35.0%
! TTGATAGTATCACAGAATGG+CGG + Chr4:20293289-20293308 MsG0480019434.01.T01:CDS 35.0%
! TTTTTGTTCTCGACGTGAAA+AGG - Chr4:20289657-20289676 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + Chr4:20293889-20293908 MsG0480019434.01.T01:intron 35.0%
!! CACAAAGGGGCATATTTTAA+AGG - Chr4:20292733-20292752 None:intergenic 35.0%
!! CATTCACAAGGATTGATTTG+AGG + Chr4:20291850-20291869 MsG0480019434.01.T01:intron 35.0%
!! GATCTACTTGCATTTTGATC+AGG - Chr4:20294357-20294376 None:intergenic 35.0%
!! TAAGTTGGCTTGTATTTACC+TGG - Chr4:20291236-20291255 None:intergenic 35.0%
!! TGTAGGTTATTAGCCTTTCT+TGG + Chr4:20292854-20292873 MsG0480019434.01.T01:intron 35.0%
!! TTCACAAGGATTGATTTGAG+GGG + Chr4:20291852-20291871 MsG0480019434.01.T01:intron 35.0%
!! TTGTGTGTAAAGGGTTTTGA+AGG - Chr4:20291581-20291600 None:intergenic 35.0%
!!! GTAAAGGGTTTTGAAGGAAT+GGG - Chr4:20291575-20291594 None:intergenic 35.0%
!!! GTTTTGACTTGATGTCACTT+AGG + Chr4:20293818-20293837 MsG0480019434.01.T01:intron 35.0%
!!! TGTAAAGGGTTTTGAAGGAA+TGG - Chr4:20291576-20291595 None:intergenic 35.0%
AAAAGGTCCAAAAACGGTCA+CGG - Chr4:20289640-20289659 None:intergenic 40.0%
AACAGATAACACCACAAGGA+TGG - Chr4:20292294-20292313 None:intergenic 40.0%
AAGAGGACCCATTTATGGTA+TGG + Chr4:20294550-20294569 MsG0480019434.01.T01:intron 40.0%
AGCAGAAGACAATGCAAAGT+TGG + Chr4:20295717-20295736 MsG0480019434.01.T01:CDS 40.0%
AGCGCTACAAGATCATAGAA+TGG - Chr4:20295836-20295855 None:intergenic 40.0%
ATAAAGGAGGGAGTTCAAGA+AGG - Chr4:20292669-20292688 None:intergenic 40.0%
ATACAAGCCAACTTAGGCTA+TGG + Chr4:20291241-20291260 MsG0480019434.01.T01:intron 40.0%
ATGCCAAAAACAACAGACAC+CGG - Chr4:20291323-20291342 None:intergenic 40.0%
ATGGTAAGAGGACCCATTTA+TGG + Chr4:20294545-20294564 MsG0480019434.01.T01:intron 40.0%
CAGCCTCTTGTGTAAAAACA+TGG + Chr4:20291942-20291961 MsG0480019434.01.T01:intron 40.0%
CTAGGTAGGGGAAATTGTAT+TGG + Chr4:20294308-20294327 MsG0480019434.01.T01:intron 40.0%
CTGCTGGATCTGAGTTTATT+GGG + Chr4:20292222-20292241 MsG0480019434.01.T01:CDS 40.0%
GACGTGAAAAGGTCCAAAAA+CGG - Chr4:20289646-20289665 None:intergenic 40.0%
GATACAAATAACGGTCTTCG+CGG - Chr4:20290465-20290484 None:intergenic 40.0%
GATTGAGTCAAAGTTGAAGG+AGG + Chr4:20295642-20295661 MsG0480019434.01.T01:intron 40.0%
GCAACCGGTAATAGTATTCT+TGG + Chr4:20291104-20291123 MsG0480019434.01.T01:CDS 40.0%
GCATATGCAGCAAACATATG+AGG + Chr4:20293521-20293540 MsG0480019434.01.T01:CDS 40.0%
GCATGGACAATTCTGATCAA+AGG + Chr4:20290675-20290694 MsG0480019434.01.T01:intron 40.0%
GGACGTTGCGATACAAATAA+CGG - Chr4:20290474-20290493 None:intergenic 40.0%
GTCAATGTTATTGACACTCC+AGG + Chr4:20291215-20291234 MsG0480019434.01.T01:CDS 40.0%
GTTATTTGTATCGCAACGTC+CGG + Chr4:20290473-20290492 MsG0480019434.01.T01:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + Chr4:20291897-20291916 MsG0480019434.01.T01:intron 40.0%
TAACTCTCCATAGCCTAAGT+TGG - Chr4:20291251-20291270 None:intergenic 40.0%
TAATTCACTTTGGGCTGAGA+TGG + Chr4:20294526-20294545 MsG0480019434.01.T01:intron 40.0%
TACATGTGTTGTGTCAGTGT+AGG - Chr4:20290713-20290732 None:intergenic 40.0%
TAGGGGAAATTGTATTGGGA+AGG + Chr4:20294313-20294332 MsG0480019434.01.T01:intron 40.0%
TAGTTATTTGCGCTTCCTGT+AGG + Chr4:20294267-20294286 MsG0480019434.01.T01:intron 40.0%
TATGGACACCAAAAACGAGA+TGG - Chr4:20291467-20291486 None:intergenic 40.0%
TCAAAAAACGAACCTGTACC+GGG + Chr4:20289583-20289602 MsG0480019434.01.T02:intron 40.0%
TCAAGATGTGATGCCAAACT+AGG - Chr4:20294412-20294431 None:intergenic 40.0%
TCATGTGACTGAAAGGTCAT+GGG + Chr4:20291904-20291923 MsG0480019434.01.T01:intron 40.0%
TCTGCTGGATCTGAGTTTAT+TGG + Chr4:20292221-20292240 MsG0480019434.01.T01:CDS 40.0%
TGATAGTATCACAGAATGGC+GGG + Chr4:20293290-20293309 MsG0480019434.01.T01:CDS 40.0%
TGCATTAGGGATCAAAATGC+AGG + Chr4:20294590-20294609 MsG0480019434.01.T01:intron 40.0%
TGCCCTTAAGGCATAAGATA+AGG + Chr4:20293901-20293920 MsG0480019434.01.T01:intron 40.0%
TGGACCTATGAACCATGAAA+TGG - Chr4:20294089-20294108 None:intergenic 40.0%
TTCATGGTTCATAGGTCCAA+TGG + Chr4:20294090-20294109 MsG0480019434.01.T01:intron 40.0%
! AACCTTTGATAGCTAGGTAG+GGG + Chr4:20294296-20294315 MsG0480019434.01.T01:intron 40.0%
! AGAACCTTTGATAGCTAGGT+AGG + Chr4:20294294-20294313 MsG0480019434.01.T01:intron 40.0%
! AGATTGAGATTTGAGATGCC+TGG - Chr4:20289852-20289871 None:intergenic 40.0%
! AGTCAGAACCTTTGATAGCT+AGG + Chr4:20294290-20294309 MsG0480019434.01.T01:intron 40.0%
! ATGAAAACTGCAAGTTGGGT+GGG + Chr4:20294666-20294685 MsG0480019434.01.T01:intron 40.0%
! GAACCTTTGATAGCTAGGTA+GGG + Chr4:20294295-20294314 MsG0480019434.01.T01:intron 40.0%
! GTGATTTGGATTTGTGATGG+GGG + Chr4:20290962-20290981 MsG0480019434.01.T01:intron 40.0%
! TAAGCACTCCATCTCGTTTT+TGG + Chr4:20291456-20291475 MsG0480019434.01.T01:intron 40.0%
! TAGACACGTGCTTCCATTTT+TGG + Chr4:20294140-20294159 MsG0480019434.01.T01:intron 40.0%
! TATGAAAACTGCAAGTTGGG+TGG + Chr4:20294665-20294684 MsG0480019434.01.T01:intron 40.0%
! TGATTTGGATTTGTGATGGG+GGG + Chr4:20290963-20290982 MsG0480019434.01.T01:intron 40.0%
!! AGAACTAAGGAAGCATCTTG+AGG + Chr4:20295768-20295787 MsG0480019434.01.T01:CDS 40.0%
!! AGACACGTGCTTCCATTTTT+GGG + Chr4:20294141-20294160 MsG0480019434.01.T01:intron 40.0%
!! ATTGATTTGAGGGGTAACCT+TGG + Chr4:20291861-20291880 MsG0480019434.01.T01:intron 40.0%
!! GATTAGTCTAGTTTGAACCC+TGG + Chr4:20291393-20291412 MsG0480019434.01.T01:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - Chr4:20294034-20294053 None:intergenic 40.0%
!!! TTACCGGTGTCTGTTGTTTT+TGG + Chr4:20291317-20291336 MsG0480019434.01.T01:intron 40.0%
AACGATTCCCACACAAAGAG+AGG - Chr4:20293192-20293211 None:intergenic 45.0%
AAGGACGAAAAGAAGCGATC+TGG + Chr4:20293235-20293254 MsG0480019434.01.T01:CDS 45.0%
ACAACACACACGCCCAAAAA+TGG - Chr4:20294156-20294175 None:intergenic 45.0%
ACACCGACACTTCTGATCAA+AGG + Chr4:20289480-20289499 MsG0480019434.01.T02:intron 45.0%
AGCAGTCTGCATTTCACAAG+AGG - Chr4:20291174-20291193 None:intergenic 45.0%
AGCGAATCCTCTCTTTGTGT+GGG + Chr4:20293182-20293201 MsG0480019434.01.T01:intron 45.0%
AGTCTGAACGGAGTTCGTAA+CGG - Chr4:20289719-20289738 None:intergenic 45.0%
AGTTGAAGGAGGCAACTACA+AGG + Chr4:20295653-20295672 MsG0480019434.01.T01:CDS 45.0%
ATAACACCACAAGGATGGCA+TGG - Chr4:20292289-20292308 None:intergenic 45.0%
CATGGCAAAGTCAATGCACT+TGG - Chr4:20292258-20292277 None:intergenic 45.0%
CCTGAAACACGTAACACCTA+TGG + Chr4:20292084-20292103 MsG0480019434.01.T01:intron 45.0%
CGCAGCTTGCAGACATTATT+TGG + Chr4:20292350-20292369 MsG0480019434.01.T01:CDS 45.0%
CGTTTGTGTTAGTGCTTCGT+AGG + Chr4:20291346-20291365 MsG0480019434.01.T01:intron 45.0%
CTGCTTCTAAATAACGGTCG+CGG - Chr4:20290525-20290544 None:intergenic 45.0%
GAGCAATGAAACTGCATAGC+GGG + Chr4:20293439-20293458 MsG0480019434.01.T01:CDS 45.0%
GGAGCAATGAAACTGCATAG+CGG + Chr4:20293438-20293457 MsG0480019434.01.T01:CDS 45.0%
GGCTGCCGATACATTTGTAA+CGG - Chr4:20289616-20289635 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+TGG + Chr4:20291903-20291922 MsG0480019434.01.T01:intron 45.0%
GTGCGCATACATGTGTGTAT+TGG - Chr4:20290046-20290065 None:intergenic 45.0%
GTTGTGTCAGTGTAGGACAA+TGG - Chr4:20290706-20290725 None:intergenic 45.0%
TAAAGGCTCTTAAGCACGGA+TGG - Chr4:20290795-20290814 None:intergenic 45.0%
TAGCGAATCCTCTCTTTGTG+TGG + Chr4:20293181-20293200 MsG0480019434.01.T01:intron 45.0%
TGCGGCCGTTACAAATGTAT+CGG + Chr4:20289608-20289627 MsG0480019434.01.T02:intron 45.0%
TTCACAAGAGGAAGTGACAC+CGG - Chr4:20291162-20291181 None:intergenic 45.0%
TTCCCCTACCTAGCTATCAA+AGG - Chr4:20294301-20294320 None:intergenic 45.0%
! ACGAAGCACTAACACAAACG+CGG - Chr4:20291346-20291365 None:intergenic 45.0%
! ACGCCTTTGATCAGAAGTGT+CGG - Chr4:20289486-20289505 None:intergenic 45.0%
! CCATAGGTGTTACGTGTTTC+AGG - Chr4:20292087-20292106 None:intergenic 45.0%
! TCAAAGGTTCTGACTCCTAC+AGG - Chr4:20294285-20294304 None:intergenic 45.0%
! TGAAAACTGCAAGTTGGGTG+GGG + Chr4:20294667-20294686 MsG0480019434.01.T01:intron 45.0%
!! ACTAAGGAAGCATCTTGAGG+AGG + Chr4:20295771-20295790 MsG0480019434.01.T01:CDS 45.0%
!! CAAGTGCATTGACTTTGCCA+TGG + Chr4:20292256-20292275 MsG0480019434.01.T01:CDS 45.0%
!! TATGGAGGGTATCTTCCACA+AGG + Chr4:20294221-20294240 MsG0480019434.01.T01:intron 45.0%
!! TGCATTGACTTTGCCATGGA+TGG + Chr4:20292260-20292279 MsG0480019434.01.T01:CDS 45.0%
!!! GGGTTTTGAAGGAATGGGAA+TGG - Chr4:20291570-20291589 None:intergenic 45.0%
!! TTAAAATAAAATAAAAACTA+CGG - Chr4:20291284-20291303 None:intergenic 5.0%
!!! TTATTTTCTTAATATTTTTT+TGG + Chr4:20293654-20293673 MsG0480019434.01.T01:intron 5.0%
AAGGTCATGGGTTCAAGTGC+TGG + Chr4:20291916-20291935 MsG0480019434.01.T01:intron 50.0%
AGCTAATGAAGCTCGGACAG+TGG + Chr4:20291049-20291068 MsG0480019434.01.T01:CDS 50.0%
ATCGCAAATCGCAAGCAGGA+AGG - Chr4:20289918-20289937 None:intergenic 50.0%
ATGATTGTGGTCTTCACGGG+AGG + Chr4:20292392-20292411 MsG0480019434.01.T01:CDS 50.0%
ATGGAGACATGGACACGACA+CGG - Chr4:20290776-20290795 None:intergenic 50.0%
ATTTGTAACGGCCGCAATCC+CGG - Chr4:20289604-20289623 None:intergenic 50.0%
CAAATCGCAAGCAGGAAGGA+AGG - Chr4:20289914-20289933 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - Chr4:20291881-20291900 None:intergenic 50.0%
CAGAATCGCAAATCGCAAGC+AGG - Chr4:20289922-20289941 None:intergenic 50.0%
CATGAAGAACTCTGCAAGCG+AGG + Chr4:20295796-20295815 MsG0480019434.01.T01:CDS 50.0%
CGCTAAGGTTGTCGCGATTT+CGG - Chr4:20290499-20290518 None:intergenic 50.0%
CTGCTTGCGATTTGCGATTC+TGG + Chr4:20289920-20289939 MsG0480019434.01.T01:five_prime_UTR 50.0%
CTTAAGCACGGATGGAGACA+TGG - Chr4:20290787-20290806 None:intergenic 50.0%
CTTTGGGCTGAGATGGTAAG+AGG + Chr4:20294533-20294552 MsG0480019434.01.T01:intron 50.0%
GATGGCATGGATACCATCCA+TGG - Chr4:20292276-20292295 None:intergenic 50.0%
TGATTGTGGTCTTCACGGGA+GGG + Chr4:20292393-20292412 MsG0480019434.01.T01:CDS 50.0%
TGGTATCCATGCCATCCTTG+TGG + Chr4:20292280-20292299 MsG0480019434.01.T01:CDS 50.0%
! CAAAGGAGAGGTTGGGTTGT+TGG + Chr4:20291681-20291700 MsG0480019434.01.T01:intron 50.0%
! CAGACTGCTGAGTTGAGTGA+TGG + Chr4:20291185-20291204 MsG0480019434.01.T01:CDS 50.0%
! GAAAACTGCAAGTTGGGTGG+GGG + Chr4:20294668-20294687 MsG0480019434.01.T01:intron 50.0%
! GTTCACTGCGCGTACTTTTC+AGG + Chr4:20289122-20289141 MsG0480019434.01.T02:five_prime_UTR 50.0%
! TGAAGCTCGGACAGTGGTTT+TGG + Chr4:20291055-20291074 MsG0480019434.01.T01:CDS 50.0%
! TGGTTGGACGTACTGGCAAT+GGG + Chr4:20291075-20291094 MsG0480019434.01.T01:CDS 50.0%
! TTGGTTGGACGTACTGGCAA+TGG + Chr4:20291074-20291093 MsG0480019434.01.T01:CDS 50.0%
!!! GTGGTTTTGGTTGGACGTAC+TGG + Chr4:20291068-20291087 MsG0480019434.01.T01:CDS 50.0%
AAGGTTGTCGCGATTTCGGC+CGG - Chr4:20290495-20290514 None:intergenic 55.0%
ACGAACCTGTACCGGGATTG+CGG + Chr4:20289590-20289609 MsG0480019434.01.T02:intron 55.0%
ACGGTGTTTCGCAGCCGTAA+CGG - Chr4:20289700-20289719 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - Chr4:20292015-20292034 None:intergenic 55.0%
AGGTCCAAAAACGGTCACGG+TGG - Chr4:20289637-20289656 None:intergenic 55.0%
CAGCTGTAAGCCCTCTTAGC+AGG + Chr4:20295411-20295430 MsG0480019434.01.T01:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - Chr4:20292014-20292033 None:intergenic 55.0%
GAAGAACTCTGCAAGCGAGG+TGG + Chr4:20295799-20295818 MsG0480019434.01.T01:CDS 55.0%
GATTGGGAATTGGCGTCAGC+TGG + Chr4:20291002-20291021 MsG0480019434.01.T01:CDS 55.0%
GATTGTGGTCTTCACGGGAG+GGG + Chr4:20292394-20292413 MsG0480019434.01.T01:CDS 55.0%
GGAAGGGGTCCCACCATATT+TGG - Chr4:20291987-20292006 None:intergenic 55.0%
GGAGGCAACTACAAGGCTTG+AGG + Chr4:20295660-20295679 MsG0480019434.01.T01:CDS 55.0%
! AATATGGTGGGACCCCTTCC+CGG + Chr4:20291987-20292006 MsG0480019434.01.T01:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + Chr4:20292019-20292038 MsG0480019434.01.T01:intron 55.0%
! GGCAATGGGAAGAGTGCAAC+CGG + Chr4:20291089-20291108 MsG0480019434.01.T01:CDS 55.0%
!! AAGTCTAGGGCTAGCTCGTC+CGG + Chr4:20291140-20291159 MsG0480019434.01.T01:CDS 55.0%
!!! GCTCGGACAGTGGTTTTGGT+TGG + Chr4:20291059-20291078 MsG0480019434.01.T01:CDS 55.0%
ACTCTGCAAGCGAGGTGGCA+AGG + Chr4:20295804-20295823 MsG0480019434.01.T01:CDS 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + Chr4:20291870-20291889 MsG0480019434.01.T01:intron 60.0%
CTCTGCAAGCGAGGTGGCAA+GGG + Chr4:20295805-20295824 MsG0480019434.01.T01:CDS 60.0%
GTCAGCTGGATCAGCTAGCG+AGG + Chr4:20291016-20291035 MsG0480019434.01.T01:CDS 60.0%
TGGTCTTCACGGGAGGGGAT+GGG + Chr4:20292399-20292418 MsG0480019434.01.T01:CDS 60.0%
! ACTGCAAGTTGGGTGGGGGA+AGG + Chr4:20294672-20294691 MsG0480019434.01.T01:intron 60.0%
! GCAGCCACCGTGACCGTTTT+TGG + Chr4:20289630-20289649 MsG0480019434.01.T02:intron 60.0%
! GGAGCTTTAGTGCACCGGGT+TGG + Chr4:20292024-20292043 MsG0480019434.01.T01:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + Chr4:20292020-20292039 MsG0480019434.01.T01:intron 60.0%
AACGGCCGCAATCCCGGTAC+AGG - Chr4:20289598-20289617 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - Chr4:20292002-20292021 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + Chr4:20292002-20292021 MsG0480019434.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG - Chr4:20292003-20292022 None:intergenic 65.0%
GCGGCTACGTGTCAGCAGCA+AGG + Chr4:20289558-20289577 MsG0480019434.01.T02:intron 65.0%
GTGGTCTTCACGGGAGGGGA+TGG + Chr4:20292398-20292417 MsG0480019434.01.T01:CDS 65.0%
TAACGGTCGCGGTCGCGCTA+AGG - Chr4:20290514-20290533 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG + Chr4:20292003-20292022 MsG0480019434.01.T01:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - Chr4:20292004-20292023 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - Chr4:20292008-20292027 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr4:20292009-20292028 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 20289062 20296002 20289062 ID=MsG0480019434.01;Name=MsG0480019434.01
Chr4 mRNA 20289669 20296002 20289669 ID=MsG0480019434.01.T01;Parent=MsG0480019434.01;Name=MsG0480019434.01.T01;_AED=0.40;_eAED=0.40;_QI=322|1|1|1|0.8|0.66|6|159|345
Chr4 exon 20289669 20289975 20289669 ID=MsG0480019434.01.T01:exon:9834;Parent=MsG0480019434.01.T01
Chr4 five_prime_UTR 20289669 20289975 20289669 ID=MsG0480019434.01.T01:five_prime_utr;Parent=MsG0480019434.01.T01
Chr4 five_prime_UTR 20290963 20290977 20290963 ID=MsG0480019434.01.T01:five_prime_utr;Parent=MsG0480019434.01.T01
Chr4 CDS 20290978 20291236 20290978 ID=MsG0480019434.01.T01:cds;Parent=MsG0480019434.01.T01
Chr4 CDS 20292207 20292484 20292207 ID=MsG0480019434.01.T01:cds;Parent=MsG0480019434.01.T01
Chr4 CDS 20293184 20293348 20293184 ID=MsG0480019434.01.T01:cds;Parent=MsG0480019434.01.T01
Chr4 CDS 20293435 20293569 20293435 ID=MsG0480019434.01.T01:cds;Parent=MsG0480019434.01.T01
Chr4 CDS 20295643 20295843 20295643 ID=MsG0480019434.01.T01:cds;Parent=MsG0480019434.01.T01
Chr4 three_prime_UTR 20295844 20296002 20295844 ID=MsG0480019434.01.T01:three_prime_utr;Parent=MsG0480019434.01.T01
Chr4 mRNA 20289062 20296002 20289062 ID=MsG0480019434.01.T02;Parent=MsG0480019434.01;Name=MsG0480019434.01.T02;_AED=0.41;_eAED=0.41;_QI=97|1|1|1|0.8|0.66|6|159|345
Chr4 exon 20289062 20289143 20289062 ID=MsG0480019434.01.T02:exon:9840;Parent=MsG0480019434.01.T02
Chr4 five_prime_UTR 20289062 20289143 20289062 ID=MsG0480019434.01.T02:five_prime_utr;Parent=MsG0480019434.01.T02
Chr4 five_prime_UTR 20290963 20290977 20290963 ID=MsG0480019434.01.T02:five_prime_utr;Parent=MsG0480019434.01.T02
Chr4 CDS 20290978 20291236 20290978 ID=MsG0480019434.01.T02:cds;Parent=MsG0480019434.01.T02
Chr4 CDS 20292207 20292484 20292207 ID=MsG0480019434.01.T02:cds;Parent=MsG0480019434.01.T02
Chr4 CDS 20293184 20293348 20293184 ID=MsG0480019434.01.T02:cds;Parent=MsG0480019434.01.T02
Chr4 CDS 20293435 20293569 20293435 ID=MsG0480019434.01.T02:cds;Parent=MsG0480019434.01.T02
Chr4 CDS 20295643 20295843 20295643 ID=MsG0480019434.01.T02:cds;Parent=MsG0480019434.01.T02
Chr4 three_prime_UTR 20295844 20296002 20295844 ID=MsG0480019434.01.T02:three_prime_utr;Parent=MsG0480019434.01.T02
Gene Sequence

>MsG0480019434.01.T02

ATGGGGGGAAGCTATGTTGAAGATGATTGGGAATTGGCGTCAGCTGGATCAGCTAGCGAGGTTCAGATTTCAGCTAATGAAGCTCGGACAGTGGTTTTGGTTGGACGTACTGGCAATGGGAAGAGTGCAACCGGTAATAGTATTCTTGGGAAAAAGGTCTTTAAGTCTAGGGCTAGCTCGTCCGGTGTCACTTCCTCTTGTGAAATGCAGACTGCTGAGTTGAGTGATGGACAAATTGTCAATGTTATTGACACTCCAGGATTATTTGAAGTTTCTGCTGGATCTGAGTTTATTGGGAAAGAAATAGCCAAGTGCATTGACTTTGCCATGGATGGTATCCATGCCATCCTTGTGGTGTTATCTGTTAGATCACGATTTAGTGAGGAAGAAGAAAATGCTCTACGCAGCTTGCAGACATTATTTGGAAGCAAGATTGTTGACTATATGATTGTGGTCTTCACGGGAGGGGATGGGTTAGAAGACGATGAAGATACACTTGACGACTATTTAGGTCGTGAATGTCCAGAATCTTTGAAGCGAATCCTCTCTTTGTGTGGGAATCGTTGTGTTCTCTTTGACAACAAGACTAAGGACGAAAAGAAGCGATCTGGACAAGTTCAACAACTTCTCTCGTTTGTAAACTTGATAGTATCACAGAATGGCGGGCAACCTTATACAGATGAGTTATTTGCAAAACTAAAGAAAGGAGCAATGAAACTGCATAGCGGGCAAAGAAAGATTGATTCCTTGGAAGAACATTCAAAAGAAGAAATATCAGAGCTTAAAAAGCATATGCAGCAAACATATGAGGAGCAGCTAAAACATATTACTGAGATGATTGAGTCAAAGTTGAAGGAGGCAACTACAAGGCTTGAGGAACAACTGAAAGAAGAGCAAGCTGCAAGATTAAAAGCAGAAGACAATGCAAAGTTGGCTCAAGAGAAATCAAACGATGAAATACGAGAACTAAGGAAGCATCTTGAGGAGGCGCATGAAGAACTCTGCAAGCGAGGTGGCAAGGGTTGTACCATTCTATGA

>MsG0480019434.01.T01

ATGGGGGGAAGCTATGTTGAAGATGATTGGGAATTGGCGTCAGCTGGATCAGCTAGCGAGGTTCAGATTTCAGCTAATGAAGCTCGGACAGTGGTTTTGGTTGGACGTACTGGCAATGGGAAGAGTGCAACCGGTAATAGTATTCTTGGGAAAAAGGTCTTTAAGTCTAGGGCTAGCTCGTCCGGTGTCACTTCCTCTTGTGAAATGCAGACTGCTGAGTTGAGTGATGGACAAATTGTCAATGTTATTGACACTCCAGGATTATTTGAAGTTTCTGCTGGATCTGAGTTTATTGGGAAAGAAATAGCCAAGTGCATTGACTTTGCCATGGATGGTATCCATGCCATCCTTGTGGTGTTATCTGTTAGATCACGATTTAGTGAGGAAGAAGAAAATGCTCTACGCAGCTTGCAGACATTATTTGGAAGCAAGATTGTTGACTATATGATTGTGGTCTTCACGGGAGGGGATGGGTTAGAAGACGATGAAGATACACTTGACGACTATTTAGGTCGTGAATGTCCAGAATCTTTGAAGCGAATCCTCTCTTTGTGTGGGAATCGTTGTGTTCTCTTTGACAACAAGACTAAGGACGAAAAGAAGCGATCTGGACAAGTTCAACAACTTCTCTCGTTTGTAAACTTGATAGTATCACAGAATGGCGGGCAACCTTATACAGATGAGTTATTTGCAAAACTAAAGAAAGGAGCAATGAAACTGCATAGCGGGCAAAGAAAGATTGATTCCTTGGAAGAACATTCAAAAGAAGAAATATCAGAGCTTAAAAAGCATATGCAGCAAACATATGAGGAGCAGCTAAAACATATTACTGAGATGATTGAGTCAAAGTTGAAGGAGGCAACTACAAGGCTTGAGGAACAACTGAAAGAAGAGCAAGCTGCAAGATTAAAAGCAGAAGACAATGCAAAGTTGGCTCAAGAGAAATCAAACGATGAAATACGAGAACTAAGGAAGCATCTTGAGGAGGCGCATGAAGAACTCTGCAAGCGAGGTGGCAAGGGTTGTACCATTCTATGA

Protein sequence

>MsG0480019434.01.T02

MGGSYVEDDWELASAGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASSSGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIAKCIDFAMDGIHAILVVLSVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDGLEDDEDTLDDYLGRECPESLKRILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVSQNGGQPYTDELFAKLKKGAMKLHSGQRKIDSLEEHSKEEISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEEQLKEEQAARLKAEDNAKLAQEKSNDEIRELRKHLEEAHEELCKRGGKGCTIL*

>MsG0480019434.01.T01

MGGSYVEDDWELASAGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASSSGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIAKCIDFAMDGIHAILVVLSVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDGLEDDEDTLDDYLGRECPESLKRILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVSQNGGQPYTDELFAKLKKGAMKLHSGQRKIDSLEEHSKEEISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEEQLKEEQAARLKAEDNAKLAQEKSNDEIRELRKHLEEAHEELCKRGGKGCTIL*