AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401560 MtrunA17_Chr3g0090511 92.453 212 15 1 1 211 68 279 3.52e-126 365
Msa0401560 MtrunA17_Chr3g0090511 91.228 57 5 0 303 359 280 336 5.83e-25 103
Msa0401560 MtrunA17_Chr1g0205331 47.489 219 106 4 1 218 32 242 7.83e-56 184
Msa0401560 MtrunA17_Chr1g0185421 50.000 214 99 4 1 211 1 209 1.42e-55 182
Msa0401560 MtrunA17_Chr1g0191151 40.265 226 95 4 1 218 1 194 1.15e-26 106
Msa0401560 MtrunA17_Chr2g0315671 40.000 140 75 4 1 138 71 203 8.89e-22 93.6
Msa0401560 MtrunA17_Chr2g0315661 40.336 119 65 2 1 119 1 113 1.12e-21 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401560 AT3G22490.1 43.256 215 100 4 5 210 6 207 5.10e-39 140
Msa0401560 AT3G22500.1 44.393 214 110 4 1 214 1 205 1.08e-38 139
Msa0401560 AT5G27980.1 53.750 80 37 0 139 218 68 147 3.91e-18 82.0
Msa0401560 AT1G03120.1 51.220 82 40 0 137 218 56 137 4.81e-15 73.2
Msa0401560 AT1G03120.2 53.333 75 35 0 137 211 56 130 2.69e-14 69.7

Find 104 sgRNAs with CRISPR-Local

Find 545 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTTGTGCCTATGAATA+TGG 0.166083 3_2:-27912642 Msa0401560:CDS
CCATGGTTCTTCATGTTTCC+TGG 0.238117 3_2:+27903369 None:intergenic
CGAACATCTGTTGTTCTTCC+AGG 0.266365 3_2:-27908688 Msa0401560:intron
CACCGTATTTGATGGGTTCT+TGG 0.267760 3_2:+27912966 None:intergenic
GTGTGAGGCCTGGCGGTGTC+GGG 0.275992 3_2:-27912478 Msa0401560:CDS
TGTGTGAGGCCTGGCGGTGT+CGG 0.283706 3_2:-27912479 Msa0401560:CDS
CTCTCAACAGCCACGCTAAT+GGG 0.294150 3_2:-27912433 Msa0401560:CDS
ATGGCTGCAGCAGGACTTCC+TGG 0.305505 3_2:+27912842 None:intergenic
CCATCAGTGCTGCTGAGATT+AGG 0.336376 3_2:-27912517 Msa0401560:CDS
GCAGTGGATATCGTTGAGTT+TGG 0.343515 3_2:-27906170 Msa0401560:CDS
GCCATGTTAGCGGCCACTTG+TGG 0.347945 3_2:+27912899 None:intergenic
CATCAGTGCTGCTGAGATTA+GGG 0.357619 3_2:-27912516 Msa0401560:CDS
CCATGTTAGCGGCCACTTGT+GGG 0.359786 3_2:+27912900 None:intergenic
AAAACTTTCTGATGTGTTAA+CGG 0.360481 3_2:-27912396 Msa0401560:intron
GCCGCTTGCATGGCTGCAGC+AGG 0.364075 3_2:+27912833 None:intergenic
CACTTTGTGCCTATGAATAT+GGG 0.375801 3_2:-27912641 Msa0401560:CDS
GCTCTCAACAGCCACGCTAA+TGG 0.376316 3_2:-27912434 Msa0401560:CDS
GCCTGGCGGTGTCGGGGCGA+CGG 0.386365 3_2:-27912471 Msa0401560:CDS
GCCGTCGCCCCGACACCGCC+AGG 0.387638 3_2:+27912470 None:intergenic
GCAGGAAAAGGAAGCACAAT+TGG 0.393538 3_2:-27904947 Msa0401560:intron
GAAAACATCACCGTATTTGA+TGG 0.395353 3_2:+27912958 None:intergenic
CGGATAAGCTGGTGGAGGAC+AGG 0.403743 3_2:-27903523 Msa0401560:CDS
GTTAATCTCTTCTTGAAGCC+TGG 0.405950 3_2:+27912988 None:intergenic
GCGGTTGATGGTCAGATTAT+AGG 0.409172 3_2:-27912686 Msa0401560:CDS
CTTCTTGAAGCCTGGTTGGT+TGG 0.415684 3_2:+27912996 None:intergenic
GTTGTGACGGAGGCGGTTGA+TGG 0.427340 3_2:-27912698 Msa0401560:CDS
GAAGCCTGGTTGGTTGGCCA+TGG 0.430327 3_2:+27913002 None:intergenic
GCCTATGAATATGGGCTTTG+CGG 0.430604 3_2:-27912633 Msa0401560:CDS
GTTAGAAGTGGCGGGGATAT+CGG 0.431798 3_2:-27912576 Msa0401560:CDS
TATCGTTGAGTTTGGAGAGT+TGG 0.432841 3_2:-27906162 Msa0401560:CDS
CTGGTTGAGCTTTGCTGTTG+TGG 0.435708 3_2:+27903388 None:intergenic
CTCACCGCAGAGACAACTTC+TGG 0.440772 3_2:+27908815 None:intergenic
ATAGGCACAAAGTGCGCGTC+AGG 0.451108 3_2:+27912650 None:intergenic
ATCTCTTCTTGAAGCCTGGT+TGG 0.457290 3_2:+27912992 None:intergenic
GATATCGGTTGGTGATAAAC+CGG 0.458559 3_2:-27912561 Msa0401560:CDS
GAGCTTTGCTGTTGTGGCCA+TGG 0.463599 3_2:+27903394 None:intergenic
GATCATTGCGGCCGCTTGCA+TGG 0.469213 3_2:+27912823 None:intergenic
TCGTCATGGTATAGCAGAAA+TGG 0.469856 3_2:-27912771 Msa0401560:CDS
CATGGGAAAAGAGTAAGATA+TGG 0.476118 3_2:-27904922 Msa0401560:CDS
TCTTTGGTTGAAGAAGGGTT+TGG 0.477120 3_2:+27913044 None:intergenic
GGAGAGAGGTGTGTGAGGCC+TGG 0.480169 3_2:-27912488 Msa0401560:CDS
AAGGAAGCACAATTGGATCA+TGG 0.485502 3_2:-27904940 Msa0401560:CDS
CCCACAAGTGGCCGCTAACA+TGG 0.487849 3_2:-27912900 Msa0401560:CDS
CCTAATCTCAGCAGCACTGA+TGG 0.492034 3_2:+27912517 None:intergenic
AACCAAGAACCCATCAAATA+CGG 0.492643 3_2:-27912968 Msa0401560:CDS
TTCTGCTGCAGCCATGTTAG+CGG 0.499845 3_2:+27912889 None:intergenic
TCCTGCTGCAGCCATGCAAG+CGG 0.501385 3_2:-27912834 Msa0401560:CDS
GCCGCAAAGCCCATATTCAT+AGG 0.505709 3_2:+27912632 None:intergenic
AGGAAGCACAATTGGATCAT+GGG 0.509767 3_2:-27904939 Msa0401560:CDS
CAATGGCTCGTTGGTCGTCA+TGG 0.509926 3_2:-27912785 Msa0401560:CDS
GGATAAGCTGGTGGAGGACA+GGG 0.510419 3_2:-27903522 Msa0401560:CDS
ATAGGATGCGGCGGATAAGC+TGG 0.519240 3_2:-27903534 Msa0401560:intron
TGTGAGGCCTGGCGGTGTCG+GGG 0.521665 3_2:-27912477 Msa0401560:CDS
AGTGGAAAGAAATGCAAAGC+TGG 0.524327 3_2:-27904882 Msa0401560:CDS
AAAACATCACCGTATTTGAT+GGG 0.527182 3_2:+27912959 None:intergenic
TGGTGGAATAGCTGCATCCA+TGG 0.532996 3_2:-27903411 Msa0401560:CDS
GGAGAGGCGTTAGAAGTGGC+GGG 0.533131 3_2:-27912584 Msa0401560:CDS
AGGCCTCACACACCTCTCTC+CGG 0.534996 3_2:+27912490 None:intergenic
TGCCGACCGTCGTGTTGTGA+CGG 0.537709 3_2:-27912711 Msa0401560:CDS
GAAGGGTTTGGAAATTTGAG+TGG 0.550972 3_2:+27913056 None:intergenic
TCAGCATCGTTCTGATCCAC+CGG 0.561215 3_2:+27912542 None:intergenic
GTTTGGAAATTTGAGTGGAG+TGG 0.563850 3_2:+27913061 None:intergenic
GCTGCTGAGATTAGGGCTAC+CGG 0.568023 3_2:-27912509 Msa0401560:CDS
CATGTTAGCGGCCACTTGTG+GGG 0.571385 3_2:+27912901 None:intergenic
CTCCGTCACAACACGACGGT+CGG 0.572167 3_2:+27912709 None:intergenic
CCGTCGTGTTGTGACGGAGG+CGG 0.578384 3_2:-27912705 Msa0401560:CDS
GCATCTGCACAATGGCTCGT+TGG 0.578751 3_2:-27912794 Msa0401560:CDS
GATGACGATCCGATCACTAT+CGG 0.581623 3_2:-27912605 Msa0401560:CDS
CACAACAGCAAAGCTCAACC+AGG 0.585445 3_2:-27903387 Msa0401560:CDS
AATATTCATCATTTGTTGTG+TGG 0.590823 3_2:+27903442 None:intergenic
CGGAGAGGCGTTAGAAGTGG+CGG 0.590961 3_2:-27912585 Msa0401560:CDS
AACGCCTCTCCGATAGTGAT+CGG 0.591968 3_2:+27912596 None:intergenic
TGCGGCGGATAAGCTGGTGG+AGG 0.592783 3_2:-27903528 Msa0401560:CDS
GAAGAAGCAATAGTTCTGAA+AGG 0.598077 3_2:-27906140 Msa0401560:CDS
TGAGCCATGGCCAACCAACC+AGG 0.605511 3_2:-27913006 Msa0401560:CDS
TGAGACAATCTCCCCACAAG+TGG 0.610093 3_2:-27912912 Msa0401560:CDS
GAAGTGGCGGGGATATCGGT+TGG 0.611879 3_2:-27912572 Msa0401560:CDS
TATCGGAGAGGCGTTAGAAG+TGG 0.617007 3_2:-27912588 Msa0401560:CDS
ATTAGCGTGGCTGTTGAGAG+CGG 0.621296 3_2:+27912436 None:intergenic
AGATTAGGGCTACCGGAGAG+AGG 0.625834 3_2:-27912502 Msa0401560:CDS
ATGATGAATATTGCTGAACC+TGG 0.626149 3_2:-27903431 Msa0401560:CDS
ATGGATGCAGCTATTCCACC+AGG 0.630413 3_2:+27903413 None:intergenic
ATGAATATTGCTGAACCTGG+TGG 0.635922 3_2:-27903428 Msa0401560:CDS
TAAGCTGGTGGAGGACAGGG+CGG 0.636080 3_2:-27903519 Msa0401560:CDS
ATCGGTTGGTGATAAACCGG+TGG 0.639207 3_2:-27912558 Msa0401560:CDS
AAACACAACACAATGAGCCA+TGG 0.639243 3_2:-27913019 Msa0401560:exon
CTACCGGAGAGAGGTGTGTG+AGG 0.640214 3_2:-27912493 Msa0401560:CDS
ATGTCTTTGAGCTTCAGCGA+AGG 0.644330 3_2:+27908714 None:intergenic
CGACCGTCGTGTTGTGACGG+AGG 0.646821 3_2:-27912708 Msa0401560:CDS
TCAGATTATAGGACGGCGCG+TGG 0.654489 3_2:-27912675 Msa0401560:CDS
TCTCTTCAATCCCATTAGCG+TGG 0.661736 3_2:+27912423 None:intergenic
TCAACGAGGCATCTGCACAA+TGG 0.666804 3_2:-27912802 Msa0401560:CDS
AGAAGCTGTGTATGATGCAG+AGG 0.680635 3_2:-27903480 Msa0401560:CDS
GAGAGGCGTTAGAAGTGGCG+GGG 0.680725 3_2:-27912583 Msa0401560:CDS
AGATGCCTCGTTGATCATTG+CGG 0.682722 3_2:+27912811 None:intergenic
GGATGCGGCGGATAAGCTGG+TGG 0.686753 3_2:-27903531 Msa0401560:CDS
TGTGTTTGGATAGGATGCGG+CGG 0.688524 3_2:-27903543 Msa0401560:intron
TTGATGGTCAGATTATAGGA+CGG 0.688715 3_2:-27912682 Msa0401560:CDS
GAGAGGTGTGTGAGGCCTGG+CGG 0.694862 3_2:-27912485 Msa0401560:CDS
TGTGCCAGAAGTTGTCTCTG+CGG 0.730498 3_2:-27908819 Msa0401560:intron
CGATCCGATCACTATCGGAG+AGG 0.731692 3_2:-27912600 Msa0401560:CDS
AGCGGCCGCAATGATCAACG+AGG 0.739216 3_2:-27912816 Msa0401560:CDS
CCGCCTCCGTCACAACACGA+CGG 0.744880 3_2:+27912705 None:intergenic
TGTTCGTGTGACAGAAACAA+CGG 0.764152 3_2:-27912735 Msa0401560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAATTAAATGATTTTAAT+TGG - chr3_2:27906097-27906116 Msa0401560:intron 10.0%
!!! TTTTTTTTGTTATAGAAAAA+AGG - chr3_2:27906839-27906858 Msa0401560:intron 10.0%
!!! ATTTGAAAATCTATTTTAAT+GGG + chr3_2:27907392-27907411 None:intergenic 10.0%
!!! TATAGATAATATTTCTAATT+AGG - chr3_2:27908217-27908236 Msa0401560:intron 10.0%
!!! AAAACATGATATTATTTTAT+TGG + chr3_2:27910593-27910612 None:intergenic 10.0%
!!! ATATTTTATCAATAATTTAC+TGG + chr3_2:27912515-27912534 None:intergenic 10.0%
!! ATACAAGATTATAATTGATT+AGG - chr3_2:27904123-27904142 Msa0401560:intron 15.0%
!! TTTAACTAACTAATCAAAAA+AGG + chr3_2:27904150-27904169 None:intergenic 15.0%
!!! CATGTTATTATTATGTTTTT+TGG - chr3_2:27904356-27904375 Msa0401560:intron 15.0%
!! AATTTAGTGAAATTGTAATA+TGG - chr3_2:27904997-27905016 Msa0401560:intron 15.0%
!! TTAACTAAAATATATGTTGA+AGG - chr3_2:27905021-27905040 Msa0401560:intron 15.0%
!! TAACTAAAATATATGTTGAA+GGG - chr3_2:27905022-27905041 Msa0401560:intron 15.0%
!! GAACTTAAATAAAAATTAAC+AGG + chr3_2:27905359-27905378 None:intergenic 15.0%
!! TATTCTTAATCGAATATATT+TGG + chr3_2:27905400-27905419 None:intergenic 15.0%
!!! TTTTCTATTTTTTAACACAT+AGG - chr3_2:27906066-27906085 Msa0401560:intron 15.0%
!! ATAATTGGAGAAAAATTATA+GGG + chr3_2:27906219-27906238 None:intergenic 15.0%
!! AATAATTGGAGAAAAATTAT+AGG + chr3_2:27906220-27906239 None:intergenic 15.0%
!! AATAATTATATTTACACTAG+AGG + chr3_2:27906710-27906729 None:intergenic 15.0%
!!! CACATTTTTTATGTTAAAAA+AGG + chr3_2:27906887-27906906 None:intergenic 15.0%
!!! ATTATTCTAATATATCCTTT+TGG - chr3_2:27907306-27907325 Msa0401560:intron 15.0%
!!! GATTTGAAAATCTATTTTAA+TGG + chr3_2:27907393-27907412 None:intergenic 15.0%
!! TAATGAATATTCTTAACAAA+AGG + chr3_2:27907829-27907848 None:intergenic 15.0%
!! TATAACTTCTGTAATTAAAA+TGG + chr3_2:27907972-27907991 None:intergenic 15.0%
!!! ATTTTAATTACAGAAGTTAT+AGG - chr3_2:27907971-27907990 Msa0401560:intron 15.0%
!! TGAAAGAAAAATTAAATCTT+GGG + chr3_2:27908713-27908732 None:intergenic 15.0%
!!! AGTTCAAAATTTATTTTGAA+AGG + chr3_2:27908752-27908771 None:intergenic 15.0%
!! TATCATTATAAAGTATGAAA+CGG + chr3_2:27908963-27908982 None:intergenic 15.0%
!!! AACTTATTTTGTCTAAAATA+CGG - chr3_2:27909232-27909251 Msa0401560:intron 15.0%
!! AAAATTCATAAAGATAAATC+TGG - chr3_2:27909696-27909715 Msa0401560:intron 15.0%
!! AAAACAATACTTACTAATTA+AGG + chr3_2:27910145-27910164 None:intergenic 15.0%
!!! TAATGTGTTTAAATTCATTT+TGG - chr3_2:27910211-27910230 Msa0401560:intron 15.0%
!!! TAAAAGCATTTAAATAGTAA+AGG - chr3_2:27910421-27910440 Msa0401560:intron 15.0%
!! ATAACTTATGTATGATTTAT+AGG - chr3_2:27911186-27911205 Msa0401560:intron 15.0%
!!! ACTCAAGAAATTTTAATTTA+CGG + chr3_2:27911223-27911242 None:intergenic 15.0%
!!! TACGATCTATAATTTTTTTT+TGG - chr3_2:27911659-27911678 Msa0401560:intron 15.0%
!! TAATAGACTACAAAAAAAAA+AGG + chr3_2:27912480-27912499 None:intergenic 15.0%
!!! ATTGCTTAGAAATTTTTATA+GGG + chr3_2:27912807-27912826 None:intergenic 15.0%
!!! AATTGCTTAGAAATTTTTAT+AGG + chr3_2:27912808-27912827 None:intergenic 15.0%
!!! TGATTAGTTAGTTAAATACT+TGG - chr3_2:27904154-27904173 Msa0401560:intron 20.0%
!!! TTTATTTTTTAGTGTGTGTT+TGG - chr3_2:27904510-27904529 Msa0401560:intron 20.0%
!!! AAATATTACAAAGTACTCAT+TGG + chr3_2:27905279-27905298 None:intergenic 20.0%
!!! GAGTACTTTGTAATATTTTT+TGG - chr3_2:27905281-27905300 Msa0401560:intron 20.0%
!!! TACTTTGTAATATTTTTTGG+TGG - chr3_2:27905284-27905303 Msa0401560:intron 20.0%
!! ATACATAATATTAACCATCA+AGG - chr3_2:27905472-27905491 Msa0401560:intron 20.0%
!! TACATAATATTAACCATCAA+GGG - chr3_2:27905473-27905492 Msa0401560:intron 20.0%
!! ATACATCATATTGTACAAAA+CGG - chr3_2:27905725-27905744 Msa0401560:intron 20.0%
!! AAAAAACTAAAAGTCAAACT+TGG - chr3_2:27905879-27905898 Msa0401560:intron 20.0%
!!! AAATGATTTTAATTGGTTGA+CGG - chr3_2:27906104-27906123 Msa0401560:intron 20.0%
!! TAATTGGAGAAAAATTATAG+GGG + chr3_2:27906218-27906237 None:intergenic 20.0%
!!! AAAAAAGGTTTTGATATTAC+AGG - chr3_2:27906854-27906873 Msa0401560:intron 20.0%
!!! GATTTTGAATAAAAAAAGAG+TGG + chr3_2:27907197-27907216 None:intergenic 20.0%
!!! AAATAACCAGTTTTCAAAAA+AGG - chr3_2:27907227-27907246 Msa0401560:intron 20.0%
!!! AATAACCAGTTTTCAAAAAA+GGG - chr3_2:27907228-27907247 Msa0401560:intron 20.0%
!!! TAAATAGAGCATTTAAAACA+AGG + chr3_2:27907421-27907440 None:intergenic 20.0%
!! TTTAAATGCTCTATTTAGTT+TGG - chr3_2:27907424-27907443 Msa0401560:intron 20.0%
!! CGAATATGAAGTAATAAAAT+CGG + chr3_2:27907662-27907681 None:intergenic 20.0%
!!! ACAAACTATTTTTTTTTACC+TGG + chr3_2:27907774-27907793 None:intergenic 20.0%
!! ACAATAACATTCAATAGAAT+TGG + chr3_2:27908388-27908407 None:intergenic 20.0%
!! GTGAAAGAAAAATTAAATCT+TGG + chr3_2:27908714-27908733 None:intergenic 20.0%
!! TTAGTTCAAAAATATGATGT+AGG - chr3_2:27909375-27909394 Msa0401560:intron 20.0%
!! TAGTTCAAAAATATGATGTA+GGG - chr3_2:27909376-27909395 Msa0401560:intron 20.0%
!!! ATTTCAAAATCTTACTGTTT+TGG + chr3_2:27909403-27909422 None:intergenic 20.0%
!!! AAACAGTAAGATTTTGAAAT+TGG - chr3_2:27909403-27909422 Msa0401560:intron 20.0%
!!! AACAGTAAGATTTTGAAATT+GGG - chr3_2:27909404-27909423 Msa0401560:intron 20.0%
!!! CAATTATAACCTATTAGTTT+TGG + chr3_2:27909450-27909469 None:intergenic 20.0%
!! TATTTAACCAACCAATATTA+CGG + chr3_2:27909478-27909497 None:intergenic 20.0%
!!! GACATTGTTTTTTTGAAAAA+AGG - chr3_2:27909901-27909920 Msa0401560:intron 20.0%
!!! GTAAGTATTGTTTTATTCTA+TGG - chr3_2:27910151-27910170 Msa0401560:intron 20.0%
!! TTATCTTACAACATAAAAAG+AGG + chr3_2:27910384-27910403 None:intergenic 20.0%
!! AATATGTTTATAGAATGCAT+AGG - chr3_2:27910458-27910477 Msa0401560:intron 20.0%
!! ATATGTTTATAGAATGCATA+GGG - chr3_2:27910459-27910478 Msa0401560:intron 20.0%
!!! TTCTGTTATACATCATTTTA+TGG + chr3_2:27910753-27910772 None:intergenic 20.0%
!!! TTTTATTTTCACATATTCAG+AGG + chr3_2:27910788-27910807 None:intergenic 20.0%
!! ATGTTTAATATATTGCAGTT+TGG - chr3_2:27910838-27910857 Msa0401560:intron 20.0%
!! AAATAAATTTCATCAAGATC+TGG + chr3_2:27910899-27910918 None:intergenic 20.0%
!! AGATATTATCATACAAAGTT+GGG + chr3_2:27911045-27911064 None:intergenic 20.0%
!! AAGATATTATCATACAAAGT+TGG + chr3_2:27911046-27911065 None:intergenic 20.0%
!!! TTCTGTTATAGATCATTTTA+TGG + chr3_2:27911325-27911344 None:intergenic 20.0%
!!! AGTTTTTTTTTTGAAGAATC+AGG + chr3_2:27912212-27912231 None:intergenic 20.0%
!! TGATTCTTCAAAAAAAAAAC+TGG - chr3_2:27912211-27912230 Msa0401560:intron 20.0%
!! GATTCTTCAAAAAAAAAACT+GGG - chr3_2:27912212-27912231 Msa0401560:intron 20.0%
!!! TTGCTTAGAAATTTTTATAG+GGG + chr3_2:27912806-27912825 None:intergenic 20.0%
!!! TTTTTTCTTTGGTTGAAGAA+GGG + chr3_2:27903405-27903424 None:intergenic 25.0%
!!! ATTGTGTTGTGTTTTTTCTT+TGG + chr3_2:27903416-27903435 None:intergenic 25.0%
! AAAACTTTCTGATGTGTTAA+CGG - chr3_2:27904045-27904064 Msa0401560:intron 25.0%
! TTAGTTAGTTAAATACTTGG+AGG - chr3_2:27904157-27904176 Msa0401560:intron 25.0%
!!! CCAATTTGTAGCTTTATATA+TGG + chr3_2:27904424-27904443 None:intergenic 25.0%
! CCATATATAAAGCTACAAAT+TGG - chr3_2:27904421-27904440 Msa0401560:intron 25.0%
! TGTTTGGTATTATGGATTTA+CGG - chr3_2:27904526-27904545 Msa0401560:intron 25.0%
! TTGATGAGCAAAATTGATAT+AGG - chr3_2:27904965-27904984 Msa0401560:intron 25.0%
! TGTAGACTTGAAATTTCATT+TGG - chr3_2:27905135-27905154 Msa0401560:intron 25.0%
! AATATTATGTATGTGTGCTT+TGG + chr3_2:27905464-27905483 None:intergenic 25.0%
! TGAACAGTTTCAAACAAAAA+GGG + chr3_2:27905612-27905631 None:intergenic 25.0%
!!! GATTTCTTTTTTGTTAGTCT+GGG + chr3_2:27905802-27905821 None:intergenic 25.0%
!!! AGATTTCTTTTTTGTTAGTC+TGG + chr3_2:27905803-27905822 None:intergenic 25.0%
!!! TTAGTTTTTTTTCCAATCGA+TGG + chr3_2:27905869-27905888 None:intergenic 25.0%
! CATTGATCTATTCAATAGAA+AGG + chr3_2:27906007-27906026 None:intergenic 25.0%
! TTGAATAGATCAATGATGAT+AGG - chr3_2:27906012-27906031 Msa0401560:intron 25.0%
! AGCATGAAATGATATGATAA+AGG + chr3_2:27906281-27906300 None:intergenic 25.0%
!! ATGCATGGTCAAATATATTT+TGG - chr3_2:27906757-27906776 Msa0401560:intron 25.0%
!! TGCATGGTCAAATATATTTT+GGG - chr3_2:27906758-27906777 Msa0401560:intron 25.0%
! ACAAAATCAAACTACGATTA+GGG + chr3_2:27906796-27906815 None:intergenic 25.0%
! ATTGTAAATATGAACACAAG+TGG - chr3_2:27906918-27906937 Msa0401560:intron 25.0%
! TGATGTTAAAACAAAAACCA+AGG + chr3_2:27906984-27907003 None:intergenic 25.0%
!!! GTTTTAACATCATAGTAATG+AGG - chr3_2:27906992-27907011 Msa0401560:intron 25.0%
!!! TTTTCGTGATGGAAAATAAA+TGG - chr3_2:27907064-27907083 Msa0401560:intron 25.0%
! ATATGTTAGAATATAGTAGC+TGG - chr3_2:27907505-27907524 Msa0401560:intron 25.0%
! AGCTCAGATAAAACAATATA+CGG + chr3_2:27907557-27907576 None:intergenic 25.0%
! AAAAAATATCATCTTTGCCT+GGG + chr3_2:27907690-27907709 None:intergenic 25.0%
! TTGTAGAAGATAATAGTTTG+TGG + chr3_2:27907910-27907929 None:intergenic 25.0%
!! ATTTTCTCTTAGTGAGTATT+TGG + chr3_2:27907945-27907964 None:intergenic 25.0%
! AACTTCTGTAATTAAAATGG+TGG + chr3_2:27907969-27907988 None:intergenic 25.0%
! GTGGTAAGAATAATGTAATT+TGG - chr3_2:27908148-27908167 Msa0401560:intron 25.0%
!!! TTATTTTAGTGTTCTTCACA+AGG + chr3_2:27908186-27908205 None:intergenic 25.0%
! GTGAAGAACACTAAAATAAA+TGG - chr3_2:27908187-27908206 Msa0401560:intron 25.0%
! TGTGATTACCTTAATTATGT+AGG + chr3_2:27908333-27908352 None:intergenic 25.0%
! AGGTTAACATATGATATGTT+GGG + chr3_2:27908360-27908379 None:intergenic 25.0%
! AAGGTTAACATATGATATGT+TGG + chr3_2:27908361-27908380 None:intergenic 25.0%
! ATTCAATAGAATTGGACAAA+AGG + chr3_2:27908380-27908399 None:intergenic 25.0%
! AAGTTTAACAAAGAGTTCTA+TGG + chr3_2:27908465-27908484 None:intergenic 25.0%
! AATAGAATGCACAAAATTTG+AGG - chr3_2:27908630-27908649 Msa0401560:intron 25.0%
! ATAGAATGCACAAAATTTGA+GGG - chr3_2:27908631-27908650 Msa0401560:intron 25.0%
! AAATCATATCAGTAACATGA+AGG + chr3_2:27908813-27908832 None:intergenic 25.0%
! TACTTCTCTGTCAAATTATT+TGG - chr3_2:27909130-27909149 Msa0401560:intron 25.0%
! CAAATTATTTGGTTATCTCA+TGG - chr3_2:27909141-27909160 Msa0401560:intron 25.0%
! AGACAAAATAAGTTTGTAGA+GGG + chr3_2:27909226-27909245 None:intergenic 25.0%
! TAGACAAAATAAGTTTGTAG+AGG + chr3_2:27909227-27909246 None:intergenic 25.0%
!!! GGTGATATGACATTTTTTAA+AGG - chr3_2:27909253-27909272 Msa0401560:intron 25.0%
!!! ACAGTAAGATTTTGAAATTG+GGG - chr3_2:27909405-27909424 Msa0401560:intron 25.0%
!!! TTTTGGCTTAATTGTAGTTT+TGG + chr3_2:27909433-27909452 None:intergenic 25.0%
! ACAATTAAGCCAAAACTAAT+AGG - chr3_2:27909438-27909457 Msa0401560:intron 25.0%
! TAATTGCAATACCGTAATAT+TGG - chr3_2:27909464-27909483 Msa0401560:intron 25.0%
!! CTCTAAGAAAAAGGTTAAAT+TGG - chr3_2:27909516-27909535 Msa0401560:intron 25.0%
! ATATTAAAATGACATTTGCG+AGG - chr3_2:27909547-27909566 Msa0401560:intron 25.0%
!!! ACTTTTTTGTGTAAATTGTG+AGG - chr3_2:27909579-27909598 Msa0401560:intron 25.0%
! AATCAAAAATGAAGTCATGA+AGG + chr3_2:27909800-27909819 None:intergenic 25.0%
!!! TTCATGACTTCATTTTTGAT+TGG - chr3_2:27909799-27909818 Msa0401560:intron 25.0%
!!! ATTTTTGATTGGCCATATTT+AGG - chr3_2:27909810-27909829 Msa0401560:intron 25.0%
!! AGTATCAAACTTTTCCTTTA+TGG + chr3_2:27909842-27909861 None:intergenic 25.0%
!!! TTTGTTTTGTAATTTAGCAG+TGG - chr3_2:27910255-27910274 Msa0401560:intron 25.0%
!! TACAACATAAAAAGAGGTAT+TGG + chr3_2:27910378-27910397 None:intergenic 25.0%
! CATTTAAATAGTAAAGGTTG+TGG - chr3_2:27910427-27910446 Msa0401560:intron 25.0%
! TATGTTTATAGAATGCATAG+GGG - chr3_2:27910460-27910479 Msa0401560:intron 25.0%
! TCTATAACATCTTAATGAAG+AGG + chr3_2:27910635-27910654 None:intergenic 25.0%
! GTGAAAATAAAAGAATGAAG+AGG - chr3_2:27910796-27910815 Msa0401560:intron 25.0%
! GTGATTTAGTGATTATTTGA+AGG - chr3_2:27911009-27911028 Msa0401560:intron 25.0%
!!! CAAGAAATTTTAATTTACGG+TGG + chr3_2:27911220-27911239 None:intergenic 25.0%
! CTTTAAATCATACATAAAGC+TGG + chr3_2:27911298-27911317 None:intergenic 25.0%
!!! TTTTATTTTCACACATGCAA+AGG + chr3_2:27911360-27911379 None:intergenic 25.0%
! GTGAAAATAAAAGAATGAAG+AGG - chr3_2:27910796-27910815 Msa0401560:intron 25.0%
! CTGTTACAAAACAAACTTAA+AGG + chr3_2:27912345-27912364 None:intergenic 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG - chr3_2:27911736-27911755 Msa0401560:intron 25.0%
! CTGTTACAAAACAAACTTAA+AGG + chr3_2:27912345-27912364 None:intergenic 25.0%
! TATGAATAAAAATGGAGTCA+GGG + chr3_2:27911947-27911966 None:intergenic 25.0%
!! AGCTTTGGTATGAATAAAAA+TGG + chr3_2:27911955-27911974 None:intergenic 25.0%
! GAGTTGAGTATATTTATCAT+CGG - chr3_2:27912066-27912085 Msa0401560:intron 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG + chr3_2:27911736-27911755 None:intergenic 25.0%
! CTGTTACAAAACAAACTTAA+AGG - chr3_2:27912345-27912364 Msa0401560:intron 25.0%
! GTTTGATGTTTGTAACATAT+AGG + chr3_2:27912372-27912391 None:intergenic 25.0%
! GTTACAAACATCAAACTTAA+AGG - chr3_2:27912376-27912395 Msa0401560:intron 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG + chr3_2:27911736-27911755 None:intergenic 25.0%
! CTGTTACAAAACAAACTTAA+AGG - chr3_2:27912345-27912364 Msa0401560:intron 25.0%
!! TGTAGTCTATTAGACTTTTT+AGG - chr3_2:27912488-27912507 Msa0401560:CDS 25.0%
!! GTAGTCTATTAGACTTTTTA+GGG - chr3_2:27912489-27912508 Msa0401560:CDS 25.0%
! AAATATAAAACTGCATCAAG+TGG - chr3_2:27912529-27912548 Msa0401560:CDS 25.0%
! AATATAAAACTGCATCAAGT+GGG - chr3_2:27912530-27912549 Msa0401560:CDS 25.0%
! AAATGTTGAAAGAATGCATA+TGG - chr3_2:27912559-27912578 Msa0401560:CDS 25.0%
! AATGTTGAAAGAATGCATAT+GGG - chr3_2:27912560-27912579 Msa0401560:CDS 25.0%
!! TTAAATGTGATGATGTATCT+AGG + chr3_2:27912724-27912743 None:intergenic 25.0%
!! TTAGAAATTTTTATAGGGGA+TGG + chr3_2:27912802-27912821 None:intergenic 25.0%
!!! AATATTCATCATTTGTTGTG+TGG + chr3_2:27913002-27913021 None:intergenic 25.0%
!!! GTTTTTTCTTTGGTTGAAGA+AGG + chr3_2:27903406-27903425 None:intergenic 30.0%
AAAACATCACCGTATTTGAT+GGG + chr3_2:27903485-27903504 None:intergenic 30.0%
AAGCACTTATAGTGAATGTA+AGG - chr3_2:27904190-27904209 Msa0401560:intron 30.0%
GATATATAATAACGTGCGTT+TGG + chr3_2:27904456-27904475 None:intergenic 30.0%
TTAGTGTGTGTTTGGTATTA+TGG - chr3_2:27904518-27904537 Msa0401560:intron 30.0%
TCTTAGTGTGTTTGGTATTA+TGG - chr3_2:27904648-27904667 Msa0401560:intron 30.0%
GAAACCATATATAAGCAACT+CGG - chr3_2:27904734-27904753 Msa0401560:intron 30.0%
GTAGTGTTTGTTTGGTATTA+CGG - chr3_2:27904794-27904813 Msa0401560:intron 30.0%
!! GTGTAGCTTTTGAAAAATCA+CGG - chr3_2:27904868-27904887 Msa0401560:CDS 30.0%
GTATCAATTTGTCAGAATCT+CGG + chr3_2:27904901-27904920 None:intergenic 30.0%
ATGAGCAAAATTGATATAGG+TGG - chr3_2:27904968-27904987 Msa0401560:intron 30.0%
AGAGATTGTATTCTTCTTTG+TGG + chr3_2:27905504-27905523 None:intergenic 30.0%
GAACAGTTTCAAACAAAAAG+GGG + chr3_2:27905611-27905630 None:intergenic 30.0%
GTGAACAGTTTCAAACAAAA+AGG + chr3_2:27905613-27905632 None:intergenic 30.0%
! TGGTTGTGAATGTTATTTGA+GGG + chr3_2:27905849-27905868 None:intergenic 30.0%
! ATGGTTGTGAATGTTATTTG+AGG + chr3_2:27905850-27905869 None:intergenic 30.0%
! TTTTATGTTCGTTGAGACTT+AGG + chr3_2:27905932-27905951 None:intergenic 30.0%
AATGATGATAGGAGAAAGAA+AGG - chr3_2:27906023-27906042 Msa0401560:intron 30.0%
AAATCAAAGCCTTCAAGTAA+AGG + chr3_2:27906049-27906068 None:intergenic 30.0%
! TTTTCTCCAATTATTGCTCT+TGG - chr3_2:27906225-27906244 Msa0401560:intron 30.0%
AAATAATCCAATCCATCATG+CGG + chr3_2:27906580-27906599 None:intergenic 30.0%
! TTTGTCCAGCTTAGTTATTT+TGG - chr3_2:27906728-27906747 Msa0401560:intron 30.0%
!! TTGTCCAGCTTAGTTATTTT+GGG - chr3_2:27906729-27906748 Msa0401560:intron 30.0%
ATATATTTGACCATGCATGA+AGG + chr3_2:27906755-27906774 None:intergenic 30.0%
! GCATGGTCAAATATATTTTG+GGG - chr3_2:27906759-27906778 Msa0401560:intron 30.0%
CACAAAATCAAACTACGATT+AGG + chr3_2:27906797-27906816 None:intergenic 30.0%
AATATCGCAACTAACTTTGT+AGG + chr3_2:27907108-27907127 None:intergenic 30.0%
ACAAAGTTAGTTGCGATATT+TGG - chr3_2:27907108-27907127 Msa0401560:intron 30.0%
TTTGAAAACTGGTTATTTGC+AGG + chr3_2:27907225-27907244 None:intergenic 30.0%
!!! AATAGCCCTTTTTTGAAAAC+TGG + chr3_2:27907236-27907255 None:intergenic 30.0%
TCTTTATGAAGATTGCCAAA+AGG + chr3_2:27907324-27907343 None:intergenic 30.0%
ACATTAAATAAAACAGCCAG+CGG + chr3_2:27907582-27907601 None:intergenic 30.0%
TATTTAATGTGCACAGTCAT+CGG - chr3_2:27907592-27907611 Msa0401560:intron 30.0%
GAAAAAATATCATCTTTGCC+TGG + chr3_2:27907691-27907710 None:intergenic 30.0%
TAGCAAACATTCACAGAAAA+AGG + chr3_2:27907804-27907823 None:intergenic 30.0%
AATAAACAGTGTAGACTGAT+TGG + chr3_2:27908063-27908082 None:intergenic 30.0%
TATCTATTAGAACTGCTTAG+AGG + chr3_2:27908101-27908120 None:intergenic 30.0%
! AGCAGTTCTAATAGATATGA+TGG - chr3_2:27908104-27908123 Msa0401560:intron 30.0%
CAAAATGCTAATTAGCATAG+TGG - chr3_2:27908129-27908148 Msa0401560:intron 30.0%
TCCTATGATGAATTCCATAT+GGG + chr3_2:27908261-27908280 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+TGG + chr3_2:27908262-27908281 None:intergenic 30.0%
GAAAATTGTGATTCCGTAAA+TGG - chr3_2:27908284-27908303 Msa0401560:intron 30.0%
GATCAACTCCTACATAATTA+AGG - chr3_2:27908322-27908341 Msa0401560:intron 30.0%
TAACATATGATATGTTGGGT+GGG + chr3_2:27908356-27908375 None:intergenic 30.0%
TTAACATATGATATGTTGGG+TGG + chr3_2:27908357-27908376 None:intergenic 30.0%
AGTTCTATGGAATTGGAATT+TGG + chr3_2:27908452-27908471 None:intergenic 30.0%
AACAAAGAGTTCTATGGAAT+TGG + chr3_2:27908459-27908478 None:intergenic 30.0%
GTTAAACTTAATCTACACCT+TGG - chr3_2:27908476-27908495 Msa0401560:intron 30.0%
! CTTTTTATGCAATTTGTCCA+AGG + chr3_2:27908496-27908515 None:intergenic 30.0%
AAAATCTAGGTGTAAAATCC+TGG + chr3_2:27908919-27908938 None:intergenic 30.0%
AGTGTGCAAGTAAAAAATCT+AGG + chr3_2:27908932-27908951 None:intergenic 30.0%
ATAATGATATGCGTTTCTGT+TGG - chr3_2:27908974-27908993 Msa0401560:intron 30.0%
ATGGAAATATTTCACGAATG+AGG + chr3_2:27909004-27909023 None:intergenic 30.0%
ATGAGCTGATAGAAACTATA+GGG + chr3_2:27909028-27909047 None:intergenic 30.0%
AATGAGCTGATAGAAACTAT+AGG + chr3_2:27909029-27909048 None:intergenic 30.0%
! TGTCTTTTCATTCTAAGTTC+TGG - chr3_2:27909067-27909086 Msa0401560:intron 30.0%
!!! GTATCAGAAGATAGTTTTGA+TGG + chr3_2:27909173-27909192 None:intergenic 30.0%
AAAACTATCTTCTGATACCA+AGG - chr3_2:27909175-27909194 Msa0401560:intron 30.0%
! TACACTCTTAATTGCAGTTT+TGG - chr3_2:27909199-27909218 Msa0401560:intron 30.0%
!!! CAGTAAGATTTTGAAATTGG+GGG - chr3_2:27909406-27909425 Msa0401560:intron 30.0%
GGTTAAATATGTTAGACATC+CGG - chr3_2:27909489-27909508 Msa0401560:intron 30.0%
! ACCTTTTTCTTAGAGTTAAC+CGG + chr3_2:27909511-27909530 None:intergenic 30.0%
TTATGGCCAATTCCTAAATA+TGG + chr3_2:27909825-27909844 None:intergenic 30.0%
TATTTAGGAATTGGCCATAA+AGG - chr3_2:27909825-27909844 Msa0401560:intron 30.0%
!!! GATACTGTTTTTGACACAAT+TGG - chr3_2:27909856-27909875 Msa0401560:intron 30.0%
AATTATGAGGTATACAAGAG+TGG + chr3_2:27909961-27909980 None:intergenic 30.0%
GGTACAAAATGTGAATTATG+AGG + chr3_2:27909974-27909993 None:intergenic 30.0%
TTATCTTAGAGTTGTTCAGA+AGG + chr3_2:27909995-27910014 None:intergenic 30.0%
TCAAGTAATCATGTTCCTTA+TGG - chr3_2:27910054-27910073 Msa0401560:intron 30.0%
TTCCTTATGGAATTCATCAT+AGG - chr3_2:27910067-27910086 Msa0401560:intron 30.0%
ATCCTATGATGAATTCCATA+AGG + chr3_2:27908262-27908281 None:intergenic 30.0%
TATAGAAAGAAGACTTCATC+AGG + chr3_2:27910497-27910516 None:intergenic 30.0%
TTAACTTTCGTACGATTTAG+TGG - chr3_2:27911082-27911101 Msa0401560:intron 30.0%
TAACTTTCGTACGATTTAGT+GGG - chr3_2:27911083-27911102 Msa0401560:intron 30.0%
ACTTCAACTGTTGTATGATT+TGG - chr3_2:27911115-27911134 Msa0401560:intron 30.0%
ATCATTGTTAAGAAAGAGGT+GGG + chr3_2:27911472-27911491 None:intergenic 30.0%
GCAAAGCAATAAAAATCAAG+TGG - chr3_2:27911541-27911560 Msa0401560:intron 30.0%
ATTATAGATCGTAGACATAC+AGG + chr3_2:27911652-27911671 None:intergenic 30.0%
GTTACAAACGTCAAACTTAA+AGG + chr3_2:27912436-27912455 None:intergenic 30.0%
GTTTGACGTTTGTAACATAT+AGG - chr3_2:27911707-27911726 Msa0401560:intron 30.0%
GTTACAAACGTCAAACTTAA+AGG + chr3_2:27912436-27912455 None:intergenic 30.0%
GTATGAATAAAAATGGAGTC+AGG + chr3_2:27911948-27911967 None:intergenic 30.0%
AATAATGCTGGTATTACACT+TGG + chr3_2:27912001-27912020 None:intergenic 30.0%
AAAAAAACTGGGTGTAGTAA+AGG - chr3_2:27912223-27912242 Msa0401560:intron 30.0%
GTTTGACGTTTGTAACATAT+AGG + chr3_2:27911707-27911726 None:intergenic 30.0%
GTTACAAACGTCAAACTTAA+AGG - chr3_2:27912436-27912455 Msa0401560:CDS 30.0%
ATATAAAACTGCATCAAGTG+GGG - chr3_2:27912531-27912550 Msa0401560:CDS 30.0%
AACCAAGAACCCATCAAATA+CGG - chr3_2:27903473-27903492 Msa0401560:CDS 35.0%
GAAAACATCACCGTATTTGA+TGG + chr3_2:27903486-27903505 None:intergenic 35.0%
! CAGCAGAATTCAACGTTTTA+GGG - chr3_2:27903567-27903586 Msa0401560:intron 35.0%
! TTGATGGTCAGATTATAGGA+CGG - chr3_2:27903759-27903778 Msa0401560:intron 35.0%
CACTTTGTGCCTATGAATAT+GGG - chr3_2:27903800-27903819 Msa0401560:intron 35.0%
! TAAGTGTCTGTTCGTTTTAG+TGG + chr3_2:27904482-27904501 None:intergenic 35.0%
TTGGTATTATGGATTTACGG+TGG - chr3_2:27904529-27904548 Msa0401560:intron 35.0%
TGGTATTATGGATTTACGGT+GGG - chr3_2:27904530-27904549 Msa0401560:intron 35.0%
GTGTAGCTTCTACAATATCA+CGG + chr3_2:27904579-27904598 None:intergenic 35.0%
TAATCAACTTAGTGCGTGTT+TGG - chr3_2:27904623-27904642 Msa0401560:intron 35.0%
GTTTGGTATCTTAGTGTGTT+TGG - chr3_2:27904640-27904659 Msa0401560:intron 35.0%
AGTGTGTTTGGTATTATGGT+AGG - chr3_2:27904652-27904671 Msa0401560:intron 35.0%
!! ATATATAAGCAACTCGGTGT+CGG - chr3_2:27904740-27904759 Msa0401560:intron 35.0%
TGTTTGGTACTCAGTGTATT+TGG - chr3_2:27904767-27904786 Msa0401560:intron 35.0%
TTGGTATCGTAGTGTTTGTT+TGG - chr3_2:27904786-27904805 Msa0401560:intron 35.0%
AAGCAAAGCTAGAATCAAAG+TGG + chr3_2:27904923-27904942 None:intergenic 35.0%
TCTCTGCTGGAAAATGTAAT+TGG + chr3_2:27905197-27905216 None:intergenic 35.0%
! ACCTAGTTAGTACTCTTTTG+CGG + chr3_2:27905234-27905253 None:intergenic 35.0%
ATTATGTATGTGTGCTTTGG+TGG + chr3_2:27905461-27905480 None:intergenic 35.0%
!!! TCTGTGTTTTGAAAGTGCAT+GGG + chr3_2:27905653-27905672 None:intergenic 35.0%
ACACAATACAAAAACCACCA+AGG - chr3_2:27905697-27905716 Msa0401560:intron 35.0%
AATATGATGTATGTGTGCCT+TGG + chr3_2:27905717-27905736 None:intergenic 35.0%
! GGAAAGCATGTAGATTCATA+TGG + chr3_2:27905781-27905800 None:intergenic 35.0%
! GGTTGTGAATGTTATTTGAG+GGG + chr3_2:27905848-27905867 None:intergenic 35.0%
TAACATTCACAACCATCGAT+TGG - chr3_2:27905854-27905873 Msa0401560:intron 35.0%
AAAGAAAGGCCTTTACTTGA+AGG - chr3_2:27906037-27906056 Msa0401560:intron 35.0%
AGTCAAATGAAGTTGTAGTG+TGG + chr3_2:27906394-27906413 None:intergenic 35.0%
AGTCGGATAGAAATGTAGAT+CGG + chr3_2:27906448-27906467 None:intergenic 35.0%
AATGGTTTCGAAAAACGAGT+CGG + chr3_2:27906465-27906484 None:intergenic 35.0%
!! TCGTAGTTTGATTTTGTGTG+TGG - chr3_2:27906799-27906818 Msa0401560:intron 35.0%
!!! TGATTGCTGTTTTAAAGCCT+TGG - chr3_2:27906964-27906983 Msa0401560:intron 35.0%
CTTAATCTACACATAGCTGT+AGG - chr3_2:27907038-27907057 Msa0401560:intron 35.0%
! GTAGTCTAATGCTCTGTTTT+AGG - chr3_2:27907446-27907465 Msa0401560:intron 35.0%
TTGGAGAAGCAAAAATCGTT+TGG + chr3_2:27908044-27908063 None:intergenic 35.0%
TCAAGTAATCATGTCCCATA+TGG - chr3_2:27908244-27908263 Msa0401560:intron 35.0%
TCCCATATGGAATTCATCAT+AGG - chr3_2:27908257-27908276 Msa0401560:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr3_2:27908532-27908551 Msa0401560:intron 35.0%
TTCCTTATCTTGTGCCTTAA+GGG + chr3_2:27908549-27908568 None:intergenic 35.0%
TTTCTTATCTTGTGCCCTTA+GGG - chr3_2:27908672-27908691 Msa0401560:intron 35.0%
! CATCTTTGCTAGCTTAGTTA+TGG + chr3_2:27908889-27908908 None:intergenic 35.0%
GAAATATTTCACGAATGAGG+AGG + chr3_2:27909001-27909020 None:intergenic 35.0%
CTGATAGAAACTATAGGGTA+TGG + chr3_2:27909023-27909042 None:intergenic 35.0%
!!! AGAAGATAGTTTTGATGGCA+AGG + chr3_2:27909168-27909187 None:intergenic 35.0%
! TGCAATTAAGAGTGTATCCT+TGG + chr3_2:27909195-27909214 None:intergenic 35.0%
TGCAATACCGTAATATTGGT+TGG - chr3_2:27909468-27909487 Msa0401560:intron 35.0%
! TCCGGTTAACTCTAAGAAAA+AGG - chr3_2:27909507-27909526 Msa0401560:intron 35.0%
! GATTGGCCATATTTAGGAAT+TGG - chr3_2:27909816-27909835 Msa0401560:intron 35.0%
TTGGTGTGCTAGATACAAAA+CGG - chr3_2:27909875-27909894 Msa0401560:intron 35.0%
ATACGACACTTCAAGTAAAG+AGG - chr3_2:27909932-27909951 Msa0401560:intron 35.0%
TATGCATCAAGCTTGATGAA+GGG + chr3_2:27910101-27910120 None:intergenic 35.0%
TTATGCATCAAGCTTGATGA+AGG + chr3_2:27910102-27910121 None:intergenic 35.0%
!! GAAGAAGCAATAGTTCTGAA+AGG - chr3_2:27910301-27910320 Msa0401560:intron 35.0%
!! AAAGAGGTATTGGATCGAAA+AGG + chr3_2:27910368-27910387 None:intergenic 35.0%
TTCCAACTGGAAAAATGAAG+AGG - chr3_2:27910706-27910725 Msa0401560:intron 35.0%
!! ATCCTCTTCATTTTTCCAGT+TGG + chr3_2:27910711-27910730 None:intergenic 35.0%
TTTGTGTCTTAACAATACCC+AGG - chr3_2:27910931-27910950 Msa0401560:intron 35.0%
TCATTGTTAAGAAAGAGGTG+GGG + chr3_2:27911471-27911490 None:intergenic 35.0%
GATCATTGTTAAGAAAGAGG+TGG + chr3_2:27911473-27911492 None:intergenic 35.0%
GCAGATCATTGTTAAGAAAG+AGG + chr3_2:27911476-27911495 None:intergenic 35.0%
CTTTCTTAACAATGATCTGC+AGG - chr3_2:27911476-27911495 Msa0401560:intron 35.0%
TAACAATGATCTGCAGGAAA+AGG - chr3_2:27911482-27911501 Msa0401560:intron 35.0%
CATGGGAAAAGAGTAAGATA+TGG - chr3_2:27911519-27911538 Msa0401560:intron 35.0%
GTTTGACGTTTGTAACATAC+AGG - chr3_2:27911767-27911786 Msa0401560:intron 35.0%
GCACACTGTTACAAAGTTAA+AGG + chr3_2:27911823-27911842 None:intergenic 35.0%
TGAGATTTGGGGAAATGTAA+GGG + chr3_2:27911922-27911941 None:intergenic 35.0%
TTGAGATTTGGGGAAATGTA+AGG + chr3_2:27911923-27911942 None:intergenic 35.0%
GATTTGACGAATTCAAGCTT+TGG + chr3_2:27911970-27911989 None:intergenic 35.0%
GCTTGAATTCGTCAAATCAA+TGG - chr3_2:27911972-27911991 Msa0401560:intron 35.0%
TGTAATACCAGCATTATTGC+AGG - chr3_2:27912003-27912022 Msa0401560:intron 35.0%
GTAATACCAGCATTATTGCA+GGG - chr3_2:27912004-27912023 Msa0401560:intron 35.0%
TAATACCAGCATTATTGCAG+GGG - chr3_2:27912005-27912024 Msa0401560:intron 35.0%
TTATTGCCTTGCAATGTACT+TGG - chr3_2:27912103-27912122 Msa0401560:intron 35.0%
AGATTACCAAGTACATTGCA+AGG + chr3_2:27912112-27912131 None:intergenic 35.0%
! TGCAATGTACTTGGTAATCT+TGG - chr3_2:27912112-27912131 Msa0401560:intron 35.0%
TCCAACAATTAGATTTCGTG+TGG - chr3_2:27912151-27912170 Msa0401560:intron 35.0%
ACCACACGAAATCTAATTGT+TGG + chr3_2:27912155-27912174 None:intergenic 35.0%
AACTGTTGTCTTCTTTCCTT+CGG - chr3_2:27912177-27912196 Msa0401560:intron 35.0%
!!! TCACGTCAGCGTTTTTTTTA+CGG - chr3_2:27912270-27912289 Msa0401560:intron 35.0%
! TTTTACGGTGAGTTAACAGA+AGG - chr3_2:27912285-27912304 Msa0401560:intron 35.0%
AAAAGGCTTAATTACACCAC+AGG + chr3_2:27912463-27912482 None:intergenic 35.0%
! TAAAGTCTACCATTTGCTAG+AGG + chr3_2:27912773-27912792 None:intergenic 35.0%
AGCAAATGGTAGACTTTAAC+TGG - chr3_2:27912775-27912794 Msa0401560:CDS 35.0%
GCAAATGGTAGACTTTAACT+GGG - chr3_2:27912776-27912795 Msa0401560:CDS 35.0%
!! ACATGTCTTTAGCCTTATTG+GGG + chr3_2:27912881-27912900 None:intergenic 35.0%
!! CACATGTCTTTAGCCTTATT+GGG + chr3_2:27912882-27912901 None:intergenic 35.0%
!! ACACATGTCTTTAGCCTTAT+TGG + chr3_2:27912883-27912902 None:intergenic 35.0%
TAAGGCTAAAGACATGTGTT+TGG - chr3_2:27912884-27912903 Msa0401560:CDS 35.0%
CTAAAGACATGTGTTTGGAT+AGG - chr3_2:27912889-27912908 Msa0401560:CDS 35.0%
ATGATGAATATTGCTGAACC+TGG - chr3_2:27913010-27913029 Msa0401560:CDS 35.0%
GTTTGGAAATTTGAGTGGAG+TGG + chr3_2:27903383-27903402 None:intergenic 40.0%
GAAGGGTTTGGAAATTTGAG+TGG + chr3_2:27903388-27903407 None:intergenic 40.0%
TCTTTGGTTGAAGAAGGGTT+TGG + chr3_2:27903400-27903419 None:intergenic 40.0%
AAACACAACACAATGAGCCA+TGG - chr3_2:27903422-27903441 Msa0401560:CDS 40.0%
GTTAATCTCTTCTTGAAGCC+TGG + chr3_2:27903456-27903475 None:intergenic 40.0%
! GCAGCAGAATTCAACGTTTT+AGG - chr3_2:27903566-27903585 Msa0401560:intron 40.0%
TCGTCATGGTATAGCAGAAA+TGG - chr3_2:27903670-27903689 Msa0401560:intron 40.0%
TGTTCGTGTGACAGAAACAA+CGG - chr3_2:27903706-27903725 Msa0401560:intron 40.0%
GCACTTTGTGCCTATGAATA+TGG - chr3_2:27903799-27903818 Msa0401560:intron 40.0%
!! GATATCGGTTGGTGATAAAC+CGG - chr3_2:27903880-27903899 Msa0401560:intron 40.0%
!! TGTCTGTTCGTTTTAGTGGT+AGG + chr3_2:27904478-27904497 None:intergenic 40.0%
CGGTGGGTATACCATAATTA+CGG - chr3_2:27904546-27904565 Msa0401560:intron 40.0%
ACGGTAGATGACCGTAATTA+TGG + chr3_2:27904560-27904579 None:intergenic 40.0%
GACACCGAGTTGCTTATATA+TGG + chr3_2:27904741-27904760 None:intergenic 40.0%
ACGACAGATAACTGTGATTC+TGG + chr3_2:27904828-27904847 None:intergenic 40.0%
CTTTCATGACTAATCTCTGC+TGG + chr3_2:27905210-27905229 None:intergenic 40.0%
!! TCCGCAAAAGAGTACTAACT+AGG - chr3_2:27905230-27905249 Msa0401560:intron 40.0%
GAGTACTAACTAGGTTGTCT+AGG - chr3_2:27905239-27905258 Msa0401560:intron 40.0%
! CTTTGTGGATTTTCCCTTGA+TGG + chr3_2:27905489-27905508 None:intergenic 40.0%
GAAGTTGAACAGTCTGTGAA+AGG + chr3_2:27905573-27905592 None:intergenic 40.0%
ATGGGTGAAAAAGGGAAACA+AGG + chr3_2:27905635-27905654 None:intergenic 40.0%
! GAAAGTGCATGGGTGAAAAA+GGG + chr3_2:27905643-27905662 None:intergenic 40.0%
! TGAAAGTGCATGGGTGAAAA+AGG + chr3_2:27905644-27905663 None:intergenic 40.0%
!!! CTCTGTGTTTTGAAAGTGCA+TGG + chr3_2:27905654-27905673 None:intergenic 40.0%
CCAATTATTGCTCTTGGTCT+CGG - chr3_2:27906231-27906250 Msa0401560:intron 40.0%
CAAATGAAGTTGTAGTGTGG+CGG + chr3_2:27906391-27906410 None:intergenic 40.0%
TCCAGTACTCAACAGATGAT+CGG + chr3_2:27906535-27906554 None:intergenic 40.0%
TCATCAAAGAAACCGCATGA+TGG - chr3_2:27906565-27906584 Msa0401560:intron 40.0%
!! AAAGAAACCGCATGATGGAT+TGG - chr3_2:27906570-27906589 Msa0401560:intron 40.0%
TCGATATCTGAGCAAGTCAT+CGG - chr3_2:27906599-27906618 Msa0401560:intron 40.0%
AAGGCCCAAAATAACTAAGC+TGG + chr3_2:27906736-27906755 None:intergenic 40.0%
!!! TTATTTTGGGCCTTCATGCA+TGG - chr3_2:27906742-27906761 Msa0401560:intron 40.0%
! CATAGTAATGAGGCATCTCA+TGG - chr3_2:27907002-27907021 Msa0401560:intron 40.0%
ACTTCATATTCGATCTTCCC+AGG - chr3_2:27907670-27907689 Msa0401560:intron 40.0%
CAAACAGGAAGCTCCATTTA+CGG + chr3_2:27908300-27908319 None:intergenic 40.0%
GTTCCTTATCTTGTGCCTTA+AGG + chr3_2:27908550-27908569 None:intergenic 40.0%
GTTTCTTATCTTGTGCCCTT+AGG - chr3_2:27908671-27908690 Msa0401560:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr3_2:27908689-27908708 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr3_2:27908690-27908709 None:intergenic 40.0%
CTCTTCCACAATCAACTCAT+GGG + chr3_2:27908846-27908865 None:intergenic 40.0%
TCTCTTCCACAATCAACTCA+TGG + chr3_2:27908847-27908866 None:intergenic 40.0%
TAGCAAAGATGATTCATGCC+AGG - chr3_2:27908898-27908917 Msa0401560:intron 40.0%
TGTGCTAGATACAAAACGGA+TGG - chr3_2:27909879-27909898 Msa0401560:intron 40.0%
TATCGTTGAGTTTGGAGAGT+TGG - chr3_2:27910279-27910298 Msa0401560:intron 40.0%
! GATGTGACTTGTGAGCATAA+TGG - chr3_2:27910549-27910568 Msa0401560:intron 40.0%
TCATAATGAGAGCTTCCAAC+TGG - chr3_2:27910693-27910712 Msa0401560:intron 40.0%
AACAATACCCAGGATGAAGT+TGG - chr3_2:27910941-27910960 Msa0401560:intron 40.0%
AAACACTCCAACTTCATCCT+GGG + chr3_2:27910951-27910970 None:intergenic 40.0%
AAAACACTCCAACTTCATCC+TGG + chr3_2:27910952-27910971 None:intergenic 40.0%
!! AGGATGAAGTTGGAGTGTTT+TGG - chr3_2:27910951-27910970 Msa0401560:intron 40.0%
AAGAGGTTGAACAGTGTAGT+TGG - chr3_2:27911385-27911404 Msa0401560:intron 40.0%
! AAGGAAGCACAATTGGATCA+TGG - chr3_2:27911501-27911520 Msa0401560:intron 40.0%
! AGGAAGCACAATTGGATCAT+GGG - chr3_2:27911502-27911521 Msa0401560:intron 40.0%
AGTGGAAAGAAATGCAAAGC+TGG - chr3_2:27911559-27911578 Msa0401560:intron 40.0%
CGTCAAACTTAAAGGACTTG+TGG + chr3_2:27911695-27911714 None:intergenic 40.0%
!!! CCACGTCAGCGTTTTTTTTA+CGG + chr3_2:27911869-27911888 None:intergenic 40.0%
TTGGGGAAATGTAAGGGTAA+AGG + chr3_2:27911916-27911935 None:intergenic 40.0%
AATCAGGAGAAGATAACCGA+AGG + chr3_2:27912196-27912215 None:intergenic 40.0%
GCACACTGTTACAGAGTTAA+AGG - chr3_2:27912316-27912335 Msa0401560:intron 40.0%
ACCTCTAATCCTCTAGCAAA+TGG - chr3_2:27912761-27912780 Msa0401560:CDS 40.0%
! ACCATTTGCTAGAGGATTAG+AGG + chr3_2:27912765-27912784 None:intergenic 40.0%
TTAATCCCATAGCAAGCCAT+TGG - chr3_2:27912840-27912859 Msa0401560:CDS 40.0%
TAATCCCATAGCAAGCCATT+GGG - chr3_2:27912841-27912860 Msa0401560:CDS 40.0%
!! CATGTCTTTAGCCTTATTGG+GGG + chr3_2:27912880-27912899 None:intergenic 40.0%
ACATGTGTTTGGATAGGATG+CGG - chr3_2:27912895-27912914 Msa0401560:CDS 40.0%
ATGAATATTGCTGAACCTGG+TGG - chr3_2:27913013-27913032 Msa0401560:exon 40.0%
ATCTCTTCTTGAAGCCTGGT+TGG + chr3_2:27903452-27903471 None:intergenic 45.0%
!! CACCGTATTTGATGGGTTCT+TGG + chr3_2:27903478-27903497 None:intergenic 45.0%
! GGTGATGTTTTCAACGTCTC+TGG - chr3_2:27903494-27903513 Msa0401560:CDS 45.0%
AGATGCCTCGTTGATCATTG+CGG + chr3_2:27903633-27903652 None:intergenic 45.0%
!! GCGGTTGATGGTCAGATTAT+AGG - chr3_2:27903755-27903774 Msa0401560:intron 45.0%
GCCTATGAATATGGGCTTTG+CGG - chr3_2:27903808-27903827 Msa0401560:intron 45.0%
GATGACGATCCGATCACTAT+CGG - chr3_2:27903836-27903855 Msa0401560:intron 45.0%
! CATCAGTGCTGCTGAGATTA+GGG - chr3_2:27903925-27903944 Msa0401560:intron 45.0%
TCTCTTCAATCCCATTAGCG+TGG + chr3_2:27904021-27904040 None:intergenic 45.0%
TGGTAGGTATGCCAGAATCA+CGG - chr3_2:27904668-27904687 Msa0401560:intron 45.0%
ATGATGTATGTGTGCCTTGG+TGG + chr3_2:27905714-27905733 None:intergenic 45.0%
CCGAGACCAAGAGCAATAAT+TGG + chr3_2:27906234-27906253 None:intergenic 45.0%
ACCCTAGCTGCCATACATTA+CGG - chr3_2:27906358-27906377 Msa0401560:intron 45.0%
GAAATGTAGATCGGACAGAG+AGG + chr3_2:27906439-27906458 None:intergenic 45.0%
GAGTCTCGACAGCAACTTAA+TGG + chr3_2:27906483-27906502 None:intergenic 45.0%
AACAGATGATCGGAGGTTGT+CGG + chr3_2:27906525-27906544 None:intergenic 45.0%
AGTACTCAACAGATGATCGG+AGG + chr3_2:27906532-27906551 None:intergenic 45.0%
TCCGATCATCTGTTGAGTAC+TGG - chr3_2:27906531-27906550 Msa0401560:intron 45.0%
!! TGGCTTTGTGTGACTCTTGT+TGG - chr3_2:27907128-27907147 Msa0401560:intron 45.0%
! CGAAGGTACGCTGAAACATA+AGG + chr3_2:27907713-27907732 None:intergenic 45.0%
ATGTCTTTGAGCTTCAGCGA+AGG + chr3_2:27907730-27907749 None:intergenic 45.0%
CGAACATCTGTTGTTCTTCC+AGG - chr3_2:27907753-27907772 Msa0401560:intron 45.0%
CGTAAATGGAGCTTCCTGTT+TGG - chr3_2:27908298-27908317 Msa0401560:intron 45.0%
! GTAGGAGTTGATCTCCAAAC+AGG + chr3_2:27908315-27908334 None:intergenic 45.0%
TGCCCTTAAGGCACAAGATA+AGG - chr3_2:27908544-27908563 Msa0401560:intron 45.0%
!! AGAGTCCCATGAGTTGATTG+TGG - chr3_2:27908838-27908857 Msa0401560:intron 45.0%
GCAGTGGATATCGTTGAGTT+TGG - chr3_2:27910271-27910290 Msa0401560:intron 45.0%
! GCAGGAAAAGGAAGCACAAT+TGG - chr3_2:27911494-27911513 Msa0401560:intron 45.0%
CCGTAAAAAAAACGCTGACG+TGG - chr3_2:27911866-27911885 Msa0401560:intron 45.0%
! GAGTCAGGGTTTGAGATTTG+GGG + chr3_2:27911933-27911952 None:intergenic 45.0%
! GGAGTCAGGGTTTGAGATTT+GGG + chr3_2:27911934-27911953 None:intergenic 45.0%
! TGGAGTCAGGGTTTGAGATT+TGG + chr3_2:27911935-27911954 None:intergenic 45.0%
TTCTTCCCCTGCAATAATGC+TGG + chr3_2:27912013-27912032 None:intergenic 45.0%
CGTCAAACTTAAAGGACCTG+TGG - chr3_2:27912444-27912463 Msa0401560:CDS 45.0%
AATCCCATAGCAAGCCATTG+GGG - chr3_2:27912842-27912861 Msa0401560:CDS 45.0%
TGAACAGTTCTCCCCCAATA+AGG - chr3_2:27912866-27912885 Msa0401560:CDS 45.0%
AGAAGCTGTGTATGATGCAG+AGG - chr3_2:27912961-27912980 Msa0401560:CDS 45.0%
!! TAGAAATATTATTTATAATT+AGG + chr3_2:27910024-27910043 None:intergenic 5.0%
!!! TATAAATAATATTTCTAATT+AGG - chr3_2:27910027-27910046 Msa0401560:intron 5.0%
CTTCTTGAAGCCTGGTTGGT+TGG + chr3_2:27903448-27903467 None:intergenic 50.0%
TGAGACAATCTCCCCACAAG+TGG - chr3_2:27903529-27903548 Msa0401560:CDS 50.0%
TTCTGCTGCAGCCATGTTAG+CGG + chr3_2:27903555-27903574 None:intergenic 50.0%
!!! GTTTTAGGGCATGCACAACC+AGG - chr3_2:27903581-27903600 Msa0401560:intron 50.0%
! TCAACGAGGCATCTGCACAA+TGG - chr3_2:27903639-27903658 Msa0401560:intron 50.0%
GCCGCAAAGCCCATATTCAT+AGG + chr3_2:27903812-27903831 None:intergenic 50.0%
AACGCCTCTCCGATAGTGAT+CGG + chr3_2:27903848-27903867 None:intergenic 50.0%
!! TATCGGAGAGGCGTTAGAAG+TGG - chr3_2:27903853-27903872 Msa0401560:intron 50.0%
! GTTAGAAGTGGCGGGGATAT+CGG - chr3_2:27903865-27903884 Msa0401560:intron 50.0%
!! ATCGGTTGGTGATAAACCGG+TGG - chr3_2:27903883-27903902 Msa0401560:intron 50.0%
TCAGCATCGTTCTGATCCAC+CGG + chr3_2:27903902-27903921 None:intergenic 50.0%
! CCTAATCTCAGCAGCACTGA+TGG + chr3_2:27903927-27903946 None:intergenic 50.0%
! CCATCAGTGCTGCTGAGATT+AGG - chr3_2:27903924-27903943 Msa0401560:intron 50.0%
ATTAGCGTGGCTGTTGAGAG+CGG + chr3_2:27904008-27904027 None:intergenic 50.0%
CTCTCAACAGCCACGCTAAT+GGG - chr3_2:27904008-27904027 Msa0401560:intron 50.0%
ACGACAGATGACCGTGATTC+TGG + chr3_2:27904682-27904701 None:intergenic 50.0%
GTATGGCAGCTAGGGTTTGA+AGG + chr3_2:27906354-27906373 None:intergenic 50.0%
GCCGTAATGTATGGCAGCTA+GGG + chr3_2:27906362-27906381 None:intergenic 50.0%
TGCCGTAATGTATGGCAGCT+AGG + chr3_2:27906363-27906382 None:intergenic 50.0%
CGGATGGATGCCGTAATGTA+TGG + chr3_2:27906371-27906390 None:intergenic 50.0%
! TGAAGTTGTAGTGTGGCGGA+TGG + chr3_2:27906387-27906406 None:intergenic 50.0%
ATGTAGATCGGACAGAGAGG+AGG + chr3_2:27906436-27906455 None:intergenic 50.0%
TGTCGGAAATGGATCATCGC+AGG + chr3_2:27906508-27906527 None:intergenic 50.0%
TGATCGGAGGTTGTCGGAAA+TGG + chr3_2:27906519-27906538 None:intergenic 50.0%
!! GCTGTAGGCTGTTTTCGTGA+TGG - chr3_2:27907053-27907072 Msa0401560:intron 50.0%
! GTTTTATCTGAGCTCTCCGC+TGG - chr3_2:27907563-27907582 Msa0401560:intron 50.0%
TGTGCCAGAAGTTGTCTCTG+CGG - chr3_2:27907622-27907641 Msa0401560:intron 50.0%
TTATTGCAGGGGAAGAACGC+AGG - chr3_2:27912016-27912035 Msa0401560:intron 50.0%
GATGTGATCCTTCTGCAGAG+TGG + chr3_2:27912683-27912702 None:intergenic 50.0%
!! CATCCCCAATGGCTTGCTAT+GGG + chr3_2:27912848-27912867 None:intergenic 50.0%
!! TCATCCCCAATGGCTTGCTA+TGG + chr3_2:27912849-27912868 None:intergenic 50.0%
GGAGAACTGTTCATCCCCAA+TGG + chr3_2:27912859-27912878 None:intergenic 50.0%
TGTGTTTGGATAGGATGCGG+CGG - chr3_2:27912898-27912917 Msa0401560:CDS 50.0%
ATGGATGCAGCTATTCCACC+AGG + chr3_2:27913031-27913050 None:intergenic 50.0%
TGGTGGAATAGCTGCATCCA+TGG - chr3_2:27913030-27913049 Msa0401560:five_prime_UTR 50.0%
!! CTGGTTGAGCTTTGCTGTTG+TGG + chr3_2:27913056-27913075 None:intergenic 50.0%
CACAACAGCAAAGCTCAACC+AGG - chr3_2:27913054-27913073 Msa0401560:five_prime_UTR 50.0%
CATGTTAGCGGCCACTTGTG+GGG + chr3_2:27903543-27903562 None:intergenic 55.0%
CCATGTTAGCGGCCACTTGT+GGG + chr3_2:27903544-27903563 None:intergenic 55.0%
GCATCTGCACAATGGCTCGT+TGG - chr3_2:27903647-27903666 Msa0401560:intron 55.0%
CAATGGCTCGTTGGTCGTCA+TGG - chr3_2:27903656-27903675 Msa0401560:intron 55.0%
TCAGATTATAGGACGGCGCG+TGG - chr3_2:27903766-27903785 Msa0401560:intron 55.0%
ATAGGCACAAAGTGCGCGTC+AGG + chr3_2:27903794-27903813 None:intergenic 55.0%
CGATCCGATCACTATCGGAG+AGG - chr3_2:27903841-27903860 Msa0401560:intron 55.0%
GCTGCTGAGATTAGGGCTAC+CGG - chr3_2:27903932-27903951 Msa0401560:intron 55.0%
AGATTAGGGCTACCGGAGAG+AGG - chr3_2:27903939-27903958 Msa0401560:intron 55.0%
GCTCTCAACAGCCACGCTAA+TGG - chr3_2:27904007-27904026 Msa0401560:intron 55.0%
!! ACTCGGTGTCGGTGTGTGTT+TGG - chr3_2:27904751-27904770 Msa0401560:intron 55.0%
TATTCCAGCCGTGCGTTGCA+CGG + chr3_2:27905335-27905354 None:intergenic 55.0%
TGGCAGCTAGGGTTTGAAGG+AGG + chr3_2:27906351-27906370 None:intergenic 55.0%
TCGGACAGAGAGGAGGAAGA+TGG + chr3_2:27906429-27906448 None:intergenic 55.0%
CTCACCGCAGAGACAACTTC+TGG + chr3_2:27907629-27907648 None:intergenic 55.0%
GATCCTTCTGCAGAGTGGCA+CGG + chr3_2:27912678-27912697 None:intergenic 55.0%
ATAGGATGCGGCGGATAAGC+TGG - chr3_2:27912907-27912926 Msa0401560:CDS 55.0%
GGATAAGCTGGTGGAGGACA+GGG - chr3_2:27912919-27912938 Msa0401560:CDS 55.0%
!! GAGCTTTGCTGTTGTGGCCA+TGG + chr3_2:27913050-27913069 None:intergenic 55.0%
TGAGCCATGGCCAACCAACC+AGG - chr3_2:27903435-27903454 Msa0401560:CDS 60.0%
! GAAGCCTGGTTGGTTGGCCA+TGG + chr3_2:27903442-27903461 None:intergenic 60.0%
CCCACAAGTGGCCGCTAACA+TGG - chr3_2:27903541-27903560 Msa0401560:intron 60.0%
GCCATGTTAGCGGCCACTTG+TGG + chr3_2:27903545-27903564 None:intergenic 60.0%
ATGGCTGCAGCAGGACTTCC+TGG + chr3_2:27903602-27903621 None:intergenic 60.0%
TCCTGCTGCAGCCATGCAAG+CGG - chr3_2:27903607-27903626 Msa0401560:intron 60.0%
GATCATTGCGGCCGCTTGCA+TGG + chr3_2:27903621-27903640 None:intergenic 60.0%
AGCGGCCGCAATGATCAACG+AGG - chr3_2:27903625-27903644 Msa0401560:intron 60.0%
TGCCGACCGTCGTGTTGTGA+CGG - chr3_2:27903730-27903749 Msa0401560:intron 60.0%
CTCCGTCACAACACGACGGT+CGG + chr3_2:27903735-27903754 None:intergenic 60.0%
! GTTGTGACGGAGGCGGTTGA+TGG - chr3_2:27903743-27903762 Msa0401560:intron 60.0%
!! CGGAGAGGCGTTAGAAGTGG+CGG - chr3_2:27903856-27903875 Msa0401560:intron 60.0%
!! GGAGAGGCGTTAGAAGTGGC+GGG - chr3_2:27903857-27903876 Msa0401560:intron 60.0%
!! GAGAGGCGTTAGAAGTGGCG+GGG - chr3_2:27903858-27903877 Msa0401560:intron 60.0%
! GAAGTGGCGGGGATATCGGT+TGG - chr3_2:27903869-27903888 Msa0401560:intron 60.0%
! CTACCGGAGAGAGGTGTGTG+AGG - chr3_2:27903948-27903967 Msa0401560:intron 60.0%
AGGCCTCACACACCTCTCTC+CGG + chr3_2:27903954-27903973 None:intergenic 60.0%
GTACGAACCCGTGCAACGCA+CGG - chr3_2:27905324-27905343 Msa0401560:intron 60.0%
ATTCCAGCCGTGCGTTGCAC+GGG + chr3_2:27905334-27905353 None:intergenic 60.0%
GTCATCGGCAGTAATCGCGC+TGG - chr3_2:27906614-27906633 Msa0401560:intron 60.0%
! TAGCCGTGCCACTCTGCAGA+AGG - chr3_2:27912672-27912691 Msa0401560:CDS 60.0%
CGGATAAGCTGGTGGAGGAC+AGG - chr3_2:27912918-27912937 Msa0401560:CDS 60.0%
TAAGCTGGTGGAGGACAGGG+CGG - chr3_2:27912922-27912941 Msa0401560:CDS 60.0%
CGACCGTCGTGTTGTGACGG+AGG - chr3_2:27903733-27903752 Msa0401560:intron 65.0%
CCGCCTCCGTCACAACACGA+CGG + chr3_2:27903739-27903758 None:intergenic 65.0%
! CCGTCGTGTTGTGACGGAGG+CGG - chr3_2:27903736-27903755 Msa0401560:intron 65.0%
! GGAGAGAGGTGTGTGAGGCC+TGG - chr3_2:27903953-27903972 Msa0401560:intron 65.0%
! GAGAGGTGTGTGAGGCCTGG+CGG - chr3_2:27903956-27903975 Msa0401560:intron 65.0%
TGTGTGAGGCCTGGCGGTGT+CGG - chr3_2:27903962-27903981 Msa0401560:intron 65.0%
GGATGCGGCGGATAAGCTGG+TGG - chr3_2:27912910-27912929 Msa0401560:CDS 65.0%
TGCGGCGGATAAGCTGGTGG+AGG - chr3_2:27912913-27912932 Msa0401560:CDS 65.0%
GCCGCTTGCATGGCTGCAGC+AGG + chr3_2:27903611-27903630 None:intergenic 70.0%
GTGTGAGGCCTGGCGGTGTC+GGG - chr3_2:27903963-27903982 Msa0401560:intron 70.0%
! TGTGAGGCCTGGCGGTGTCG+GGG - chr3_2:27903964-27903983 Msa0401560:intron 70.0%
GAACCCGTGCAACGCACGGC+TGG - chr3_2:27905328-27905347 Msa0401560:intron 70.0%
!! GCCTGGCGGTGTCGGGGCGA+CGG - chr3_2:27903970-27903989 Msa0401560:intron 80.0%
! GCCGTCGCCCCGACACCGCC+AGG + chr3_2:27903974-27903993 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 27903379 27913084 27903379 ID=Msa0401560;Name=Msa0401560
chr3_2 mRNA 27903379 27913084 27903379 ID=Msa0401560-mRNA-1;Parent=Msa0401560;Name=Msa0401560-mRNA-1;_AED=0.43;_eAED=0.43;_QI=55|0.2|0.33|0.83|1|1|6|0|359
chr3_2 exon 27903379 27903552 27903379 ID=Msa0401560-mRNA-1:exon:5727;Parent=Msa0401560-mRNA-1
chr3_2 exon 27904861 27904965 27904861 ID=Msa0401560-mRNA-1:exon:5726;Parent=Msa0401560-mRNA-1
chr3_2 exon 27906112 27906191 27906112 ID=Msa0401560-mRNA-1:exon:5725;Parent=Msa0401560-mRNA-1
chr3_2 exon 27908689 27908740 27908689 ID=Msa0401560-mRNA-1:exon:5724;Parent=Msa0401560-mRNA-1
chr3_2 exon 27908820 27908855 27908820 ID=Msa0401560-mRNA-1:exon:5723;Parent=Msa0401560-mRNA-1
chr3_2 exon 27912397 27913084 27912397 ID=Msa0401560-mRNA-1:exon:5722;Parent=Msa0401560-mRNA-1
chr3_2 five_prime_UTR 27913030 27913084 27913030 ID=Msa0401560-mRNA-1:five_prime_utr;Parent=Msa0401560-mRNA-1
chr3_2 CDS 27912397 27913029 27912397 ID=Msa0401560-mRNA-1:cds;Parent=Msa0401560-mRNA-1
chr3_2 CDS 27908820 27908855 27908820 ID=Msa0401560-mRNA-1:cds;Parent=Msa0401560-mRNA-1
chr3_2 CDS 27908689 27908740 27908689 ID=Msa0401560-mRNA-1:cds;Parent=Msa0401560-mRNA-1
chr3_2 CDS 27906112 27906191 27906112 ID=Msa0401560-mRNA-1:cds;Parent=Msa0401560-mRNA-1
chr3_2 CDS 27904861 27904965 27904861 ID=Msa0401560-mRNA-1:cds;Parent=Msa0401560-mRNA-1
chr3_2 CDS 27903379 27903552 27903379 ID=Msa0401560-mRNA-1:cds;Parent=Msa0401560-mRNA-1
Gene Sequence

>Msa0401560

ATGAGCCATGGCCAACCAACCAGGCTTCAAGAAGAGATTAACCAAGAACCCATCAAATACGGTGATGTTTTCAACGTCTCTGGTGATTTAGCATCTGAGACAATCTCCCCACAAGTGGCCGCTAACATGGCTGCAGCAGAATTCAACGTTTTAGGGCATGCACAACCAGGAAGTCCTGCTGCAGCCATGCAAGCGGCCGCAATGATCAACGAGGCATCTGCACAATGGCTCGTTGGTCGTCATGGTATAGCAGAAATGGTCAAAGATCATGCTGTTCGTGTGACAGAAACAACGGCTGCCGACCGTCGTGTTGTGACGGAGGCGGTTGATGGTCAGATTATAGGACGGCGCGTGGAGCCTGACGCGCACTTTGTGCCTATGAATATGGGCTTTGCGGCTATAGATGACGATCCGATCACTATCGGAGAGGCGTTAGAAGTGGCGGGGATATCGGTTGGTGATAAACCGGTGGATCAGAACGATGCTGATGCCATCAGTGCTGCTGAGATTAGGGCTACCGGAGAGAGGTGTGTGAGGCCTGGCGGTGTCGGGGCGACGGCGCAATCTGCAGCCGCTCTCAACAGCCACGCTAATGGGATTGAAGAGATGACAAAACTTTCTGATGTGTTAACGTCATCGGCGACTACTGTGCCAGAAGTTGTCTCTGCGCGTACCTTCGCTGAAGCTCAAAGACATTGTCGAACATCTGTTGTTCTTCCAGCAGTGGATATCGTTGAGTTTGGAGAGTTGGAAGAAGCAATAGTTCTGAAAGGAGTTAAGAGTAGAAATGATGAAACAAAAGAAAAGGAAGCACAATTGGATCATGGGAAAAGAGTAAGATATGGCAAAGCAATAAAAATCAAGTGGAAAGAAATGCAAAGCTGGATAAAATGCAATGCAGCAAGAGATGCGGCGGATAAGCTGGTGGAGGACAGGGCGGTGACGAAAGAAGATGCAGAAGCTGTGTATGATGCAGAGGTGCATAAGAATTCATCCACACAACAAATGATGAATATTGCTGAACCTGGTGGAATAGCTGCATCCATGGCCACAACAGCAAAGCTCAACCAGGAAACATGA

Protein sequence

>Msa0401560

MSHGQPTRLQEEINQEPIKYGDVFNVSGDLASETISPQVAANMAAAEFNVLGHAQPGSPAAAMQAAAMINEASAQWLVGRHGIAEMVKDHAVRVTETTAADRRVVTEAVDGQIIGRRVEPDAHFVPMNMGFAAIDDDPITIGEALEVAGISVGDKPVDQNDADAISAAEIRATGERCVRPGGVGATAQSAAALNSHANGIEEMTKLSDVLTSSATTVPEVVSARTFAEAQRHCRTSVVLPAVDIVEFGELEEAIVLKGVKSRNDETKEKEAQLDHGKRVRYGKAIKIKWKEMQSWIKCNAARDAADKLVEDRAVTKEDAEAVYDAEVHKNSSTQQMMNIAEPGGIAASMATTAKLNQET*