AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604700 MtrunA17_Chr4g0033921 91.031 223 14 2 1 223 2 218 3.70e-143 398
Msa0604700 MtrunA17_Chr3g0079511 36.885 122 70 3 96 216 39 154 5.91e-21 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604700 AT2G30695.2 30.846 201 120 5 20 216 9 194 1.34e-21 89.0
Msa0604700 AT2G30695.3 30.846 201 120 5 20 216 9 194 1.34e-21 89.0
Msa0604700 AT2G30695.1 30.846 201 120 5 20 216 9 194 1.34e-21 89.0

Find 43 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAGCAGGAAAAGAATT+TGG 0.180310 4_2:+50332977 Msa0604700:CDS
CCAATTTCAGCTGTTAATTC+AGG 0.240777 4_2:+50330301 Msa0604700:CDS
CCTGAATTAACAGCTGAAAT+TGG 0.305151 4_2:-50330301 None:intergenic
AGTGCTATTGATTTAGCATT+TGG 0.308771 4_2:-50330098 None:intergenic
CACTCCTAGTGTAATGGAAT+TGG 0.327298 4_2:-50330054 None:intergenic
TCGTTGAAGTTGACTTTGTT+AGG 0.333613 4_2:+50332691 Msa0604700:intron
CCTGGATTTCGCATGCAAAA+AGG 0.372253 4_2:+50331163 Msa0604700:CDS
ACTTCCTTCTACAGATGCTT+GGG 0.399626 4_2:+50332736 Msa0604700:CDS
CTTCCCCAAGCATCTGTAGA+AGG 0.423340 4_2:-50332740 None:intergenic
ATCTGTAGAAGGAAGTCTTT+CGG 0.427957 4_2:-50332729 None:intergenic
GACTTCCTTCTACAGATGCT+TGG 0.439445 4_2:+50332735 Msa0604700:CDS
TGTATCTTATTATCATCTCC+TGG 0.439751 4_2:-50330478 None:intergenic
TAAGAATGCTGAAATATCAT+TGG 0.446744 4_2:-50330431 None:intergenic
TGTCTCTGTCTCTGTCTCCA+TGG 0.463445 4_2:+50330132 Msa0604700:CDS
CAAAACAAGTTATTCACCTT+CGG 0.464607 4_2:-50333029 None:intergenic
CTCTGTCTCCATGGAGAAGA+AGG 0.465388 4_2:+50330141 Msa0604700:CDS
GTTTGGTACCTTCTTCTCCA+TGG 0.477856 4_2:-50330149 None:intergenic
TGCATGCGAAATCCAGGCAC+TGG 0.488521 4_2:-50331157 None:intergenic
CGTACGGCCCCACCAGTGCC+TGG 0.488782 4_2:+50331145 Msa0604700:CDS
GGCCTAAGTTTATAAGAATC+CGG 0.491763 4_2:-50331123 None:intergenic
AACTCTCACTCCTAGTGTAA+TGG 0.494044 4_2:-50330060 None:intergenic
CAGGCACTGGTGGGGCCGTA+CGG 0.501017 4_2:-50331144 None:intergenic
GACCGGATTCTTATAAACTT+AGG 0.501149 4_2:+50331121 Msa0604700:CDS
TGCGAAATCCAGGCACTGGT+GGG 0.515069 4_2:-50331153 None:intergenic
AAAAGAGAAAGCAATGGATA+AGG 0.524582 4_2:+50329949 None:intergenic
AAACACAGAAGGTATTTGAC+CGG 0.527893 4_2:+50331104 Msa0604700:CDS
GCCACTGTAGTTGCAGAACC+AGG 0.531242 4_2:+50330460 Msa0604700:CDS
TAGTGTAATGGAATTGGAGT+TGG 0.540616 4_2:-50330048 None:intergenic
GATAGTCTCTCTACTTCCAA+TGG 0.546713 4_2:+50330253 Msa0604700:CDS
CTTAGATGCAAAGGACAAGA+AGG 0.565021 4_2:+50332916 Msa0604700:CDS
CCAGGAAAACTTAGATGCAA+AGG 0.568120 4_2:+50332907 Msa0604700:intron
TCTTATAAACTTAGGCCGTA+CGG 0.572177 4_2:+50331129 Msa0604700:CDS
GTTTAAATGGCAGTTAAGAG+TGG 0.573603 4_2:+50331066 Msa0604700:intron
ATGTCTGAGAGTTGTTCCAT+TGG 0.575900 4_2:-50330269 None:intergenic
CAGTTAAGAGTGGACTTGAC+TGG 0.592282 4_2:+50331076 Msa0604700:intron
ATGCGAAATCCAGGCACTGG+TGG 0.601200 4_2:-50331154 None:intergenic
CTTCCTTCTACAGATGCTTG+GGG 0.611133 4_2:+50332737 Msa0604700:CDS
GTGAGTATCAATTCAAACAC+AGG 0.613223 4_2:+50329996 Msa0604700:five_prime_UTR
GACTGGTGTTCAAACACAGA+AGG 0.630186 4_2:+50331093 Msa0604700:CDS
AACTCCAATTCCATTACACT+AGG 0.641122 4_2:+50330050 Msa0604700:CDS
GCGAAATCCAGGCACTGGTG+GGG 0.648008 4_2:-50331152 None:intergenic
TCCTGGTTCTGCAACTACAG+TGG 0.653749 4_2:-50330461 None:intergenic
AGAAATACTCAATTGTACCA+TGG 0.664939 4_2:+50332788 Msa0604700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAATAAAAATAT+TGG - chr4_2:50332423-50332442 None:intergenic 0.0%
!! AAAAGATACATAATAAATAA+AGG - chr4_2:50330329-50330348 None:intergenic 10.0%
!!! AAAATATTTTACATGATAAA+AGG - chr4_2:50330949-50330968 None:intergenic 10.0%
!! TTGATACTTAATTATATAAT+TGG + chr4_2:50331412-50331431 Msa0604700:intron 10.0%
!!! TATTTATTATGTATCTTTTG+AGG + chr4_2:50330330-50330349 Msa0604700:intron 15.0%
!!! TAAAATATTTTTCTGAAGAA+TGG + chr4_2:50330958-50330977 Msa0604700:intron 15.0%
!! AGAAAATGAAAACATAAAAT+TGG - chr4_2:50331006-50331025 None:intergenic 15.0%
!! AGTAATTAAGTTAAAATTCA+GGG - chr4_2:50332341-50332360 None:intergenic 15.0%
!! AAGTAATTAAGTTAAAATTC+AGG - chr4_2:50332342-50332361 None:intergenic 15.0%
!! AAGAATGAATGAATAATTTA+TGG - chr4_2:50332480-50332499 None:intergenic 15.0%
!! ATATATATTATCATGATTCA+TGG - chr4_2:50332636-50332655 None:intergenic 15.0%
!! TTTAGATTGGAATCAATTTA+TGG - chr4_2:50330520-50330539 None:intergenic 20.0%
!!! TTTTGTTAAGAGTCTTTTAT+CGG + chr4_2:50330663-50330682 Msa0604700:intron 20.0%
!! TTTACTTTACAATTACAAGT+TGG + chr4_2:50330709-50330728 Msa0604700:intron 20.0%
!!! ATATTTTACATGATAAAAGG+AGG - chr4_2:50330946-50330965 None:intergenic 20.0%
!! GACAAATAACAAGTTTATAT+AGG - chr4_2:50332235-50332254 None:intergenic 20.0%
! AATGAATAAGTGAAGTAGTT+TGG - chr4_2:50330169-50330188 None:intergenic 25.0%
! TAAGAATGCTGAAATATCAT+TGG - chr4_2:50330434-50330453 None:intergenic 25.0%
! CTTCAAACATAAACAAATTG+TGG + chr4_2:50330875-50330894 Msa0604700:intron 25.0%
! TTGTAATCTTGTGGTTTAAA+TGG + chr4_2:50331053-50331072 Msa0604700:intron 25.0%
! GCAAAGTATGAATCATAAAA+GGG - chr4_2:50331246-50331265 None:intergenic 25.0%
! TGCAAAGTATGAATCATAAA+AGG - chr4_2:50331247-50331266 None:intergenic 25.0%
! TATATAATTGGTATTAGAGC+TGG + chr4_2:50331424-50331443 Msa0604700:intron 25.0%
! TTTAAAGATAGCTATCAAAG+AGG - chr4_2:50331627-50331646 None:intergenic 25.0%
! AATACAGGAAGTGATAAAAT+GGG - chr4_2:50332014-50332033 None:intergenic 25.0%
! AAATACAGGAAGTGATAAAA+TGG - chr4_2:50332015-50332034 None:intergenic 25.0%
!! ATTTTATCACTTCCTGTATT+TGG + chr4_2:50332014-50332033 Msa0604700:intron 25.0%
!!! TTTTTTCACTAACCAAATAC+AGG - chr4_2:50332029-50332048 None:intergenic 25.0%
!!! TTTACTGGTTTTCTCATAAT+TGG - chr4_2:50332151-50332170 None:intergenic 25.0%
! TTTCATTTCCTTTCATTTAC+TGG - chr4_2:50332166-50332185 None:intergenic 25.0%
! CAAATGATAATTATATCGAG+AGG + chr4_2:50332204-50332223 Msa0604700:intron 25.0%
! ATAACAAGTTTATATAGGCA+GGG - chr4_2:50332230-50332249 None:intergenic 25.0%
! AATAACAAGTTTATATAGGC+AGG - chr4_2:50332231-50332250 None:intergenic 25.0%
! TGAGATAAAACTTAATCTCA+GGG - chr4_2:50332555-50332574 None:intergenic 25.0%
! TTGAGATAAAACTTAATCTC+AGG - chr4_2:50332556-50332575 None:intergenic 25.0%
!! AGTGCTATTGATTTAGCATT+TGG - chr4_2:50330101-50330120 None:intergenic 30.0%
TGTATCTTATTATCATCTCC+TGG - chr4_2:50330481-50330500 None:intergenic 30.0%
! AGAAACACACACTTTTAGAT+TGG - chr4_2:50330533-50330552 None:intergenic 30.0%
ATCAATCAACTTGATGAACT+AGG + chr4_2:50330555-50330574 Msa0604700:intron 30.0%
! AGTTTTCATGCCCAATTAAT+CGG + chr4_2:50330597-50330616 Msa0604700:intron 30.0%
GAAACAAATTAAATCCCACA+GGG - chr4_2:50330626-50330645 None:intergenic 30.0%
AGAAACAAATTAAATCCCAC+AGG - chr4_2:50330627-50330646 None:intergenic 30.0%
! TGTAAAGTAAACACGTTTTC+AGG - chr4_2:50330700-50330719 None:intergenic 30.0%
!!! ATTACAAGTTGGTTTTGTAG+AGG + chr4_2:50330720-50330739 Msa0604700:intron 30.0%
! TTGTTTATGTTTGAAGCTAC+AGG - chr4_2:50330871-50330890 None:intergenic 30.0%
! TTTTACATGATAAAAGGAGG+AGG - chr4_2:50330943-50330962 None:intergenic 30.0%
!! GGATTGATTTTGTAATCTTG+TGG + chr4_2:50331044-50331063 Msa0604700:intron 30.0%
ATTCATTGCTAGATTGTGAT+AGG + chr4_2:50331297-50331316 Msa0604700:intron 30.0%
TTCATTGCTAGATTGTGATA+GGG + chr4_2:50331298-50331317 Msa0604700:intron 30.0%
!!! TGATAGCTAGCTTTTAAAAG+AGG + chr4_2:50331375-50331394 Msa0604700:intron 30.0%
!!! GATAGCTAGCTTTTAAAAGA+GGG + chr4_2:50331376-50331395 Msa0604700:intron 30.0%
! AGGATAAGGGTTTTTAAATG+GGG - chr4_2:50331688-50331707 None:intergenic 30.0%
! GAGGATAAGGGTTTTTAAAT+GGG - chr4_2:50331689-50331708 None:intergenic 30.0%
! TGAGGATAAGGGTTTTTAAA+TGG - chr4_2:50331690-50331709 None:intergenic 30.0%
!! TTTTTAGTGTGTCTAGAATG+TGG - chr4_2:50331742-50331761 None:intergenic 30.0%
TTTCACAGAAAAATGGTCAT+CGG - chr4_2:50331765-50331784 None:intergenic 30.0%
! GCTCTTATTTCACAGAAAAA+TGG - chr4_2:50331772-50331791 None:intergenic 30.0%
ACTTTATAAGCTCCATTTGT+TGG + chr4_2:50331796-50331815 Msa0604700:intron 30.0%
CCAAAAAATTGAAAAGTTGC+AGG - chr4_2:50331853-50331872 None:intergenic 30.0%
! CCTGCAACTTTTCAATTTTT+TGG + chr4_2:50331850-50331869 Msa0604700:intron 30.0%
TGTATTCTCTTGATCATCAA+AGG + chr4_2:50331900-50331919 Msa0604700:intron 30.0%
AAGTGTTTCCTTGATATTCA+TGG + chr4_2:50331937-50331956 Msa0604700:intron 30.0%
!! TTAGCTTGTGTTCTTTACAA+AGG + chr4_2:50331974-50331993 Msa0604700:intron 30.0%
TGAGAAAACCAGTAAATGAA+AGG + chr4_2:50332155-50332174 Msa0604700:intron 30.0%
!! ACTTGTTATTTGTCTCTTGT+TGG + chr4_2:50332241-50332260 Msa0604700:intron 30.0%
AATTCTGAACTATGATGAAC+AGG - chr4_2:50332295-50332314 None:intergenic 30.0%
AGAAATACTCAATTGTACCA+TGG + chr4_2:50332788-50332807 Msa0604700:CDS 30.0%
!!! CTTTTTTGTATAATCAGCCA+TGG - chr4_2:50332808-50332827 None:intergenic 30.0%
CATGGCTGATTATACAAAAA+AGG + chr4_2:50332806-50332825 Msa0604700:CDS 30.0%
GTGAGTATCAATTCAAACAC+AGG + chr4_2:50329996-50330015 Msa0604700:five_prime_UTR 35.0%
! TAGTGTAATGGAATTGGAGT+TGG - chr4_2:50330051-50330070 None:intergenic 35.0%
AACTCCAATTCCATTACACT+AGG + chr4_2:50330050-50330069 Msa0604700:CDS 35.0%
TTCTCAAACTACATCAAGCA+AGG - chr4_2:50330200-50330219 None:intergenic 35.0%
CCTGAATTAACAGCTGAAAT+TGG - chr4_2:50330304-50330323 None:intergenic 35.0%
CCAATTTCAGCTGTTAATTC+AGG + chr4_2:50330301-50330320 Msa0604700:CDS 35.0%
! ACTAGTTCTTCTTGCTTTGT+AGG + chr4_2:50330385-50330404 Msa0604700:intron 35.0%
TGGAATCAATTTATGGTGCA+TGG - chr4_2:50330513-50330532 None:intergenic 35.0%
! GTCTTTTATCGGATGAGATA+AGG + chr4_2:50330674-50330693 Msa0604700:intron 35.0%
AACAAAAGTTCTCACAACGT+GGG - chr4_2:50330761-50330780 None:intergenic 35.0%
AAACAAAAGTTCTCACAACG+TGG - chr4_2:50330762-50330781 None:intergenic 35.0%
AGGCTAAAGGGAAAATAACA+AGG - chr4_2:50330923-50330942 None:intergenic 35.0%
GTTTAAATGGCAGTTAAGAG+TGG + chr4_2:50331066-50331085 Msa0604700:intron 35.0%
!! AAACACAGAAGGTATTTGAC+CGG + chr4_2:50331104-50331123 Msa0604700:CDS 35.0%
GACCGGATTCTTATAAACTT+AGG + chr4_2:50331121-50331140 Msa0604700:CDS 35.0%
GGCCTAAGTTTATAAGAATC+CGG - chr4_2:50331126-50331145 None:intergenic 35.0%
TCTTATAAACTTAGGCCGTA+CGG + chr4_2:50331129-50331148 Msa0604700:CDS 35.0%
ATAGGGATTTGCGTATTATG+AGG + chr4_2:50331315-50331334 Msa0604700:intron 35.0%
TATTAGAGCTGGTTATCTAG+TGG + chr4_2:50331435-50331454 Msa0604700:intron 35.0%
!! GCATTGATGTTTTGTAACGA+GGG - chr4_2:50331831-50331850 None:intergenic 35.0%
AATACATGATGCAAATGCGA+AGG - chr4_2:50331886-50331905 None:intergenic 35.0%
GAACAAGACCATGAATATCA+AGG - chr4_2:50331948-50331967 None:intergenic 35.0%
!! GATATTCATGGTCTTGTTCT+TGG + chr4_2:50331949-50331968 Msa0604700:intron 35.0%
TCTTTACAAAGGAAAGACCT+TGG + chr4_2:50331985-50332004 Msa0604700:intron 35.0%
TAGTGAAAAAATCCACCTTG+TGG + chr4_2:50332038-50332057 Msa0604700:intron 35.0%
AGTGAAAAAATCCACCTTGT+GGG + chr4_2:50332039-50332058 Msa0604700:intron 35.0%
TTTAACAGAGAAATCCCACA+AGG - chr4_2:50332056-50332075 None:intergenic 35.0%
TCATAATTGGACTGCATATC+TGG - chr4_2:50332138-50332157 None:intergenic 35.0%
! TCGTTGAAGTTGACTTTGTT+AGG + chr4_2:50332691-50332710 Msa0604700:intron 35.0%
ATCTGTAGAAGGAAGTCTTT+CGG - chr4_2:50332732-50332751 None:intergenic 35.0%
! ATCTAAGTTTTCCTGGAATC+GGG - chr4_2:50332903-50332922 None:intergenic 35.0%
! CATCTAAGTTTTCCTGGAAT+CGG - chr4_2:50332904-50332923 None:intergenic 35.0%
CTCAAAAAATCATTCACAGC+AGG + chr4_2:50332965-50332984 Msa0604700:CDS 35.0%
TTCACAGCAGGAAAAGAATT+TGG + chr4_2:50332977-50332996 Msa0604700:CDS 35.0%
! TATTCACCTTCGGAGTTTTT+AGG - chr4_2:50333022-50333041 None:intergenic 35.0%
! CACTCCTAGTGTAATGGAAT+TGG - chr4_2:50330057-50330076 None:intergenic 40.0%
AACTCTCACTCCTAGTGTAA+TGG - chr4_2:50330063-50330082 None:intergenic 40.0%
GATAGTCTCTCTACTTCCAA+TGG + chr4_2:50330253-50330272 Msa0604700:CDS 40.0%
ATGTCTGAGAGTTGTTCCAT+TGG - chr4_2:50330272-50330291 None:intergenic 40.0%
GATAAAAGGAGGAGGCTAAA+GGG - chr4_2:50330935-50330954 None:intergenic 40.0%
TGATAAAAGGAGGAGGCTAA+AGG - chr4_2:50330936-50330955 None:intergenic 40.0%
! TTTCTTGAACCCTGCTGTTT+AGG + chr4_2:50331021-50331040 Msa0604700:intron 40.0%
! TTCTTGAACCCTGCTGTTTA+GGG + chr4_2:50331022-50331041 Msa0604700:intron 40.0%
AATCAATCCCCTAAACAGCA+GGG - chr4_2:50331033-50331052 None:intergenic 40.0%
AAATCAATCCCCTAAACAGC+AGG - chr4_2:50331034-50331053 None:intergenic 40.0%
CAAGCAACTCTTGAGGATAA+GGG - chr4_2:50331701-50331720 None:intergenic 40.0%
TCAAGCAACTCTTGAGGATA+AGG - chr4_2:50331702-50331721 None:intergenic 40.0%
! TAGTGTGTCTAGAATGTGGT+TGG - chr4_2:50331738-50331757 None:intergenic 40.0%
!!! GGCATTGATGTTTTGTAACG+AGG - chr4_2:50331832-50331851 None:intergenic 40.0%
TCTCTTGATCATCAAAGGCT+TGG + chr4_2:50331905-50331924 Msa0604700:intron 40.0%
AGTGATAAAATGGGCATCCA+AGG - chr4_2:50332005-50332024 None:intergenic 40.0%
GGGATTTCTCTGTTAAACCT+TGG + chr4_2:50332059-50332078 Msa0604700:intron 40.0%
ACTTCCTTCTACAGATGCTT+GGG + chr4_2:50332736-50332755 Msa0604700:CDS 40.0%
! CGATTTTTCTCCTCTGTATG+TGG + chr4_2:50332833-50332852 Msa0604700:intron 40.0%
! ACATTTGATTTCCCGATTCC+AGG + chr4_2:50332889-50332908 Msa0604700:intron 40.0%
! CCTTTGCATCTAAGTTTTCC+TGG - chr4_2:50332910-50332929 None:intergenic 40.0%
CCAGGAAAACTTAGATGCAA+AGG + chr4_2:50332907-50332926 Msa0604700:intron 40.0%
CTTAGATGCAAAGGACAAGA+AGG + chr4_2:50332916-50332935 Msa0604700:CDS 40.0%
ATTGAGCCTAAAAACTCCGA+AGG + chr4_2:50333013-50333032 Msa0604700:CDS 40.0%
GTTTGGTACCTTCTTCTCCA+TGG - chr4_2:50330152-50330171 None:intergenic 45.0%
CACAGGGAAGCCGATTAATT+GGG - chr4_2:50330610-50330629 None:intergenic 45.0%
! CAATTAATCGGCTTCCCTGT+GGG + chr4_2:50330609-50330628 Msa0604700:intron 45.0%
!! GGTTTTGTAGAGGTTGCGTT+AGG + chr4_2:50330730-50330749 Msa0604700:intron 45.0%
AAGTTCTCACAACGTGGGTT+GGG - chr4_2:50330756-50330775 None:intergenic 45.0%
AAAGTTCTCACAACGTGGGT+TGG - chr4_2:50330757-50330776 None:intergenic 45.0%
TGTTATCCTGACTTTGCCAC+TGG + chr4_2:50330833-50330852 Msa0604700:intron 45.0%
! GTTTGAAGCTACAGGTTGCA+TGG - chr4_2:50330863-50330882 None:intergenic 45.0%
! TCTTGAACCCTGCTGTTTAG+GGG + chr4_2:50331023-50331042 Msa0604700:intron 45.0%
! CAGTTAAGAGTGGACTTGAC+TGG + chr4_2:50331076-50331095 Msa0604700:intron 45.0%
GACTGGTGTTCAAACACAGA+AGG + chr4_2:50331093-50331112 Msa0604700:CDS 45.0%
! CCTTTTTGCATGCGAAATCC+AGG - chr4_2:50331166-50331185 None:intergenic 45.0%
CCTGGATTTCGCATGCAAAA+AGG + chr4_2:50331163-50331182 Msa0604700:CDS 45.0%
GGATTTCGCATGCAAAAAGG+AGG + chr4_2:50331166-50331185 Msa0604700:CDS 45.0%
CACTACTCGATGTGGTACTT+GGG - chr4_2:50331343-50331362 None:intergenic 45.0%
ACGGTACTAGGATAAGGACT+TGG + chr4_2:50331527-50331546 Msa0604700:intron 45.0%
CGGTACTAGGATAAGGACTT+GGG + chr4_2:50331528-50331547 Msa0604700:intron 45.0%
! AAGGGTTTTTAAATGGGGCG+AGG - chr4_2:50331683-50331702 None:intergenic 45.0%
TTGTGCTCAAGCAACTCTTG+AGG - chr4_2:50331708-50331727 None:intergenic 45.0%
TCAAGAGTTGCTTGAGCACA+AGG + chr4_2:50331707-50331726 Msa0604700:intron 45.0%
AACAGAGAAATCCCACAAGG+TGG - chr4_2:50332053-50332072 None:intergenic 45.0%
CTGGTAACAGAGACAACTGA+GGG - chr4_2:50332119-50332138 None:intergenic 45.0%
TCTGGTAACAGAGACAACTG+AGG - chr4_2:50332120-50332139 None:intergenic 45.0%
TGCTCCAGGGAAATCATCAA+AGG + chr4_2:50332387-50332406 Msa0604700:intron 45.0%
GACTTCCTTCTACAGATGCT+TGG + chr4_2:50332735-50332754 Msa0604700:CDS 45.0%
CTTCCTTCTACAGATGCTTG+GGG + chr4_2:50332737-50332756 Msa0604700:CDS 45.0%
TGTCTCTGTCTCTGTCTCCA+TGG + chr4_2:50330132-50330151 Msa0604700:CDS 50.0%
CTCTGTCTCCATGGAGAAGA+AGG + chr4_2:50330141-50330160 Msa0604700:CDS 50.0%
!! TCCTGGTTCTGCAACTACAG+TGG - chr4_2:50330464-50330483 None:intergenic 50.0%
CCACAGGGAAGCCGATTAAT+TGG - chr4_2:50330611-50330630 None:intergenic 50.0%
! CCAATTAATCGGCTTCCCTG+TGG + chr4_2:50330608-50330627 Msa0604700:intron 50.0%
GGTATACCAGTGGCAAAGTC+AGG - chr4_2:50330842-50330861 None:intergenic 50.0%
CAGGTTGCATGGTATACCAG+TGG - chr4_2:50330852-50330871 None:intergenic 50.0%
GCACTACTCGATGTGGTACT+TGG - chr4_2:50331344-50331363 None:intergenic 50.0%
GAGCTGGTTATCTAGTGGCT+CGG + chr4_2:50331440-50331459 Msa0604700:intron 50.0%
! GGTTATCTAGTGGCTCGGAA+AGG + chr4_2:50331445-50331464 Msa0604700:intron 50.0%
TCGGAAAGGACTACCTACGA+AGG + chr4_2:50331459-50331478 Msa0604700:intron 50.0%
CGGAAAGGACTACCTACGAA+GGG + chr4_2:50331460-50331479 Msa0604700:intron 50.0%
GGAAAGGACTACCTACGAAG+GGG + chr4_2:50331461-50331480 Msa0604700:intron 50.0%
CATTGTAGAGTGCATCTGCC+CGG + chr4_2:50331503-50331522 Msa0604700:intron 50.0%
ATTGTAGAGTGCATCTGCCC+GGG + chr4_2:50331504-50331523 Msa0604700:intron 50.0%
TCCTTATCCTAGTACCGTCC+CGG - chr4_2:50331525-50331544 None:intergenic 50.0%
ATGCTACTCGACGTGGAACT+TGG - chr4_2:50331567-50331586 None:intergenic 50.0%
AGTTCCACGTCGAGTAGCAT+AGG + chr4_2:50331567-50331586 Msa0604700:intron 50.0%
GTCGAGTAGCATAGGCTGAT+CGG + chr4_2:50331575-50331594 Msa0604700:intron 50.0%
GGGCATAAGCAGCCAACAAA+TGG - chr4_2:50331811-50331830 None:intergenic 50.0%
GCAAATGCGAAGGTCACTTG+TGG - chr4_2:50331876-50331895 None:intergenic 50.0%
TTGACGGAGTTTGAGGACCA+AGG - chr4_2:50332079-50332098 None:intergenic 50.0%
GGTCAACTTGACGGAGTTTG+AGG - chr4_2:50332086-50332105 None:intergenic 50.0%
GAAGGAGAGGGTCAACTTGA+CGG - chr4_2:50332095-50332114 None:intergenic 50.0%
ACAACTGAGGGTGAAGGAGA+GGG - chr4_2:50332107-50332126 None:intergenic 50.0%
ACAGAGACAACTGAGGGTGA+AGG - chr4_2:50332113-50332132 None:intergenic 50.0%
! CGCACCTTTGATGATTTCCC+TGG - chr4_2:50332394-50332413 None:intergenic 50.0%
CTTCCCCAAGCATCTGTAGA+AGG - chr4_2:50332743-50332762 None:intergenic 50.0%
TCCTCTGTATGTGGCTGTCA+TGG + chr4_2:50332842-50332861 Msa0604700:intron 50.0%
TCCATGACAGCCACATACAG+AGG - chr4_2:50332846-50332865 None:intergenic 50.0%
GCCACTGTAGTTGCAGAACC+AGG + chr4_2:50330460-50330479 Msa0604700:CDS 55.0%
!! TGCGAAATCCAGGCACTGGT+GGG - chr4_2:50331156-50331175 None:intergenic 55.0%
!! ATGCGAAATCCAGGCACTGG+TGG - chr4_2:50331157-50331176 None:intergenic 55.0%
TGCATGCGAAATCCAGGCAC+TGG - chr4_2:50331160-50331179 None:intergenic 55.0%
GCATCTCGCACTACTCGATG+TGG - chr4_2:50331351-50331370 None:intergenic 55.0%
TACCTACGAAGGGGCTGGAA+AGG + chr4_2:50331470-50331489 Msa0604700:intron 55.0%
CCTTATCCTAGTACCGTCCC+GGG - chr4_2:50331524-50331543 None:intergenic 55.0%
TCAGCCTATGCTACTCGACG+TGG - chr4_2:50331574-50331593 None:intergenic 55.0%
GACAACTGAGGGTGAAGGAG+AGG - chr4_2:50332108-50332127 None:intergenic 55.0%
GGAGCAGTTCACACATCGCA+AGG - chr4_2:50332373-50332392 None:intergenic 55.0%
TGCGATGTGTGAACTGCTCC+AGG + chr4_2:50332373-50332392 Msa0604700:intron 55.0%
GCGATGTGTGAACTGCTCCA+GGG + chr4_2:50332374-50332393 Msa0604700:intron 55.0%
!! GCGAAATCCAGGCACTGGTG+GGG - chr4_2:50331155-50331174 None:intergenic 60.0%
AGGACTACCTACGAAGGGGC+TGG + chr4_2:50331465-50331484 Msa0604700:intron 60.0%
AGCCTTTCCAGCCCCTTCGT+AGG - chr4_2:50331475-50331494 None:intergenic 60.0%
TAGAGTGCATCTGCCCGGGA+CGG + chr4_2:50331508-50331527 Msa0604700:intron 60.0%
CCCGGGACGGTACTAGGATA+AGG + chr4_2:50331521-50331540 Msa0604700:intron 60.0%
CATCTGCCCGGGACGGTACT+AGG + chr4_2:50331515-50331534 Msa0604700:intron 65.0%
!! CAGGCACTGGTGGGGCCGTA+CGG - chr4_2:50331147-50331166 None:intergenic 70.0%
CGTACGGCCCCACCAGTGCC+TGG + chr4_2:50331145-50331164 Msa0604700:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50329964 50333042 50329964 ID=Msa0604700;Name=Msa0604700
chr4_2 mRNA 50329964 50333042 50329964 ID=Msa0604700-mRNA-1;Parent=Msa0604700;Name=Msa0604700-mRNA-1;_AED=0.16;_eAED=0.16;_QI=65|0.6|0.66|1|1|1|6|0|223
chr4_2 exon 50329964 50330162 50329964 ID=Msa0604700-mRNA-1:exon:11863;Parent=Msa0604700-mRNA-1
chr4_2 exon 50330249 50330322 50330249 ID=Msa0604700-mRNA-1:exon:11864;Parent=Msa0604700-mRNA-1
chr4_2 exon 50330407 50330501 50330407 ID=Msa0604700-mRNA-1:exon:11865;Parent=Msa0604700-mRNA-1
chr4_2 exon 50331079 50331187 50331079 ID=Msa0604700-mRNA-1:exon:11866;Parent=Msa0604700-mRNA-1
chr4_2 exon 50332700 50332827 50332700 ID=Msa0604700-mRNA-1:exon:11867;Parent=Msa0604700-mRNA-1
chr4_2 exon 50332911 50333042 50332911 ID=Msa0604700-mRNA-1:exon:11868;Parent=Msa0604700-mRNA-1
chr4_2 five_prime_UTR 50329964 50330028 50329964 ID=Msa0604700-mRNA-1:five_prime_utr;Parent=Msa0604700-mRNA-1
chr4_2 CDS 50330029 50330162 50330029 ID=Msa0604700-mRNA-1:cds;Parent=Msa0604700-mRNA-1
chr4_2 CDS 50330249 50330322 50330249 ID=Msa0604700-mRNA-1:cds;Parent=Msa0604700-mRNA-1
chr4_2 CDS 50330407 50330501 50330407 ID=Msa0604700-mRNA-1:cds;Parent=Msa0604700-mRNA-1
chr4_2 CDS 50331079 50331187 50331079 ID=Msa0604700-mRNA-1:cds;Parent=Msa0604700-mRNA-1
chr4_2 CDS 50332700 50332827 50332700 ID=Msa0604700-mRNA-1:cds;Parent=Msa0604700-mRNA-1
chr4_2 CDS 50332911 50333042 50332911 ID=Msa0604700-mRNA-1:cds;Parent=Msa0604700-mRNA-1
Gene Sequence

>Msa0604700

ATGTCGATGATTGCTGTCTCCAACTCCAATTCCATTACACTAGGAGTGAGAGTTGCTTCATTCACAACTCCAAATGCTAAATCAATAGCACTCACTTTTTCTCTGTCTCTGTCTCTGTCTCCATGGAGAAGAAGCTTAGATAGTCTCTCTACTTCCAATGGAACAACTCTCAGACATCTTAATACTCCAATTTCAGCTGTTAATTCAGGTTTAGAAGCATCAATTACAGATTCCAATGATATTTCAGCATTCTTAACAGATGCCACTGTAGTTGCAGAACCAGGAGATGATAATAAGATACAATTAAGAGTGGACTTGACTGGTGTTCAAACACAGAAGGTATTTGACCGGATTCTTATAAACTTAGGCCGTACGGCCCCACCAGTGCCTGGATTTCGCATGCAAAAAGGAGTTGACTTTGTTAGGAAATCGATGCAGATTCCGAAAGACTTCCTTCTACAGATGCTTGGGGAAGAACGTGTCACTAAGTTTGCAATACAAGAAATACTCAATTGTACCATGGCTGATTATACAAAAAAGGAAAACTTAGATGCAAAGGACAAGAAGGTTAGCACTATTCAAACGATACAAGAACTCAAAAAATCATTCACAGCAGGAAAAGAATTTGGATTCAATGTTCTAATTGAGCCTAAAAACTCCGAAGGTGAATAA

Protein sequence

>Msa0604700

MSMIAVSNSNSITLGVRVASFTTPNAKSIALTFSLSLSLSPWRRSLDSLSTSNGTTLRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNKIQLRVDLTGVQTQKVFDRILINLGRTAPPVPGFRMQKGVDFVRKSMQIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKKENLDAKDKKVSTIQTIQELKKSFTAGKEFGFNVLIEPKNSEGE*