AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507190 MtrunA17_Chr3g0111011 94.853 272 6 1 1 272 1 264 0.0 520
Msa0507190 MtrunA17_Chr1g0212841 56.422 218 87 1 55 272 3 212 1.08e-88 262
Msa0507190 MtrunA17_Chr1g0181861 26.066 211 137 7 70 267 26 230 1.24e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507190 AT5G16710.1 65.399 263 73 4 20 272 4 258 4.42e-122 349
Msa0507190 AT1G75270.1 58.986 217 80 2 55 270 3 211 8.32e-92 270
Msa0507190 AT1G19570.1 56.221 217 86 2 55 270 3 211 3.46e-83 249
Msa0507190 AT1G19550.1 48.148 162 61 1 109 270 13 151 1.39e-45 150
Msa0507190 AT5G02790.1 28.431 204 123 8 81 269 38 233 6.58e-12 64.3

Find 88 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCTTCTCTACATTTAT+TGG 0.099081 3_4:-54413537 Msa0507190:CDS
TTTCTTAAATCAACCAATTT+TGG 0.139790 3_4:+54414446 None:intergenic
AGCAACACTCTTTGGCTAAA+AGG 0.217920 3_4:+54414500 None:intergenic
TTTACCTTATGAGCCAAAAT+TGG 0.268108 3_4:-54414459 Msa0507190:CDS
GGCACATCAGCACTAGTTTA+AGG 0.271227 3_4:+54411469 None:intergenic
ATGTCTTTCCCATTGATAAA+AGG 0.296522 3_4:+54412702 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.310068 3_4:-54412629 Msa0507190:CDS
TGCTTGTTCTGTTCCGTCAT+TGG 0.311879 3_4:+54413494 None:intergenic
CTTTCCATCAAAATTTATTA+CGG 0.320003 3_4:+54414278 None:intergenic
CAGAAGACATTGATACTCTA+AGG 0.322844 3_4:+54416864 None:intergenic
TCATTTGCTTGAGTCTCTTA+AGG 0.341122 3_4:-54411734 Msa0507190:intron
TATCATCAACCCTCTACTTT+AGG 0.351222 3_4:+54411779 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3_4:-54412645 Msa0507190:CDS
ATTACGGGAACTTTGCCTTC+AGG 0.363043 3_4:+54414294 None:intergenic
CATGTAGAGCAAAAGGATTA+AGG 0.368670 3_4:-54411546 Msa0507190:three_prime_UTR
CTTACCACGCCTAACAAGAT+TGG 0.369882 3_4:-54416800 Msa0507190:CDS
GCTTGTTCTGTTCCGTCATT+GGG 0.376742 3_4:+54413495 None:intergenic
AAAACAAAAGAAATGAATTT+CGG 0.378042 3_4:+54411253 None:intergenic
TGCCTTCAGGACTGATTTCA+AGG 0.380155 3_4:+54414307 None:intergenic
CCAGTGTCAGCAACACTCTT+TGG 0.382066 3_4:+54414492 None:intergenic
GGACAAGAAGATCACCATTC+TGG 0.384402 3_4:+54414419 None:intergenic
TTTCCATCAAAATTTATTAC+GGG 0.394965 3_4:+54414279 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3_4:-54412646 Msa0507190:CDS
TGTTCCTCCTTCTGAGCCAT+TGG 0.402497 3_4:-54416843 Msa0507190:CDS
TTACAGTCTCCAATCTTGTT+AGG 0.419388 3_4:+54416791 None:intergenic
TTCCTTGAGGTAATCGTTGA+AGG 0.431943 3_4:+54413452 None:intergenic
ATGTAGAGCAAAAGGATTAA+GGG 0.433786 3_4:-54411545 Msa0507190:three_prime_UTR
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3_4:+54412667 None:intergenic
CAGGAAGCATGTAGAGCAAA+AGG 0.438331 3_4:-54411553 Msa0507190:three_prime_UTR
TCAGGTGGTGTCACCAATGG+TGG 0.440607 3_4:+54414201 None:intergenic
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3_4:+54412654 None:intergenic
AAATAACTAAAACCATGAAA+AGG 0.444273 3_4:+54416758 None:intergenic
AATGCTGAAACCGTTGTTGA+AGG 0.445494 3_4:+54416892 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3_4:-54412658 Msa0507190:CDS
TTTGGGACATTATAAGAAAT+GGG 0.450474 3_4:-54412628 Msa0507190:CDS
CTAGTTGAAACGGCGTAGCT+TGG 0.457758 3_4:+54416917 None:intergenic
GACCTTGGTCTTAATAAAAG+AGG 0.458384 3_4:-54411443 Msa0507190:three_prime_UTR
GGTGTCACCAATGGTGGGCT+AGG 0.458979 3_4:+54414207 None:intergenic
TTTATTAAGACCAAGGTCAA+TGG 0.462160 3_4:+54411448 None:intergenic
TACCTCAACATCAGTTCAAA+AGG 0.462596 3_4:-54411410 Msa0507190:three_prime_UTR
ACGGTAACGAAGGTGGTTAA+CGG 0.463252 3_4:+54416940 None:intergenic
GCAACACTCTTTGGCTAAAA+GGG 0.467390 3_4:+54414501 None:intergenic
ATTGGTGACACCACCTGAAA+AGG 0.468553 3_4:-54414196 Msa0507190:CDS
CAACCTTCAATGACATCATC+CGG 0.486528 3_4:+54411806 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.497857 3_4:-54414241 Msa0507190:CDS
CTTCAAGTAAGACTTCAAAA+AGG 0.500765 3_4:+54412587 None:intergenic
AATAACTAAAACCATGAAAA+GGG 0.501277 3_4:+54416759 None:intergenic
TGCTGATGTGCCATTGACCT+TGG 0.513017 3_4:-54411458 Msa0507190:three_prime_UTR
CCAAAGAGTGTTGCTGACAC+TGG 0.519488 3_4:-54414492 Msa0507190:CDS
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3_4:+54412643 None:intergenic
TTGAAACGGCGTAGCTTGGA+CGG 0.528321 3_4:+54416921 None:intergenic
GCAACTTCCAATGGCTCAGA+AGG 0.530234 3_4:+54416836 None:intergenic
GCTTTAACAGCAACTTCCAA+TGG 0.538010 3_4:+54416827 None:intergenic
TTTGAACTGATGTTGAGGTA+GGG 0.541201 3_4:+54411413 None:intergenic
CATCAACACACGTGCACAGC+CGG 0.542223 3_4:-54411825 Msa0507190:CDS
GTTGAAGGAGCTAGTTGAAA+CGG 0.542410 3_4:+54416907 None:intergenic
ATTTAAGAAACAAACCAGAA+TGG 0.544999 3_4:-54414433 Msa0507190:intron
TGAATTCTAACGGTGGACAT+TGG 0.546517 3_4:+54416989 None:intergenic
CAGGTGGTGTCACCAATGGT+GGG 0.551034 3_4:+54414202 None:intergenic
GAAAGAAAAGAGTAGATGAG+TGG 0.551383 3_4:+54411755 None:intergenic
CGGATGATGTCATTGAAGGT+TGG 0.553799 3_4:-54411805 Msa0507190:CDS
CCCTAACATGTTAAAATCTG+TGG 0.555061 3_4:+54411582 None:intergenic
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3_4:-54414214 Msa0507190:CDS
TTTAATCACACAAACATTGG+AGG 0.562440 3_4:-54414238 Msa0507190:CDS
AAAGGTCAGCGAGTCAGGTA+CGG 0.564552 3_4:+54412605 None:intergenic
TCAACTAGCTCCTTCAACAA+CGG 0.572004 3_4:-54416902 Msa0507190:CDS
TGCTGAAACTTGAATTCTAA+CGG 0.573659 3_4:+54416979 None:intergenic
AGAAGACATTGATACTCTAA+GGG 0.575820 3_4:+54416865 None:intergenic
ACGAAGGTGGTTAACGGTGG+CGG 0.577042 3_4:+54416946 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.581723 3_4:-54414309 Msa0507190:CDS
AGAGCAAAAGGATTAAGGGA+GGG 0.582587 3_4:-54411541 Msa0507190:three_prime_UTR
CAGCCGGATGATGTCATTGA+AGG 0.588388 3_4:-54411809 Msa0507190:CDS
GTCTCCAATCTTGTTAGGCG+TGG 0.591564 3_4:+54416796 None:intergenic
TAACATGTTAGGGAGAGGCC+AGG 0.591963 3_4:-54411572 Msa0507190:three_prime_UTR
CTCCTTCAACGATTACCTCA+AGG 0.601777 3_4:-54413454 Msa0507190:CDS
ACTTCCAATGGCTCAGAAGG+AGG 0.609075 3_4:+54416839 None:intergenic
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3_4:-54411789 Msa0507190:CDS
AAAAGCAAAGATCCCAATGA+CGG 0.633633 3_4:-54413507 Msa0507190:CDS
AGCTTGGACGGTAACGAAGG+TGG 0.635574 3_4:+54416933 None:intergenic
AAGAGTGTTGCTGACACTGG+AGG 0.648023 3_4:-54414489 Msa0507190:CDS
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3_4:-54411788 Msa0507190:CDS
TAGAGCAAAAGGATTAAGGG+AGG 0.658433 3_4:-54411542 Msa0507190:three_prime_UTR
TCTGCGGCTGACCTATCACT+AGG 0.664557 3_4:-54412678 Msa0507190:CDS
CGTAGCTTGGACGGTAACGA+AGG 0.683732 3_4:+54416930 None:intergenic
GAAGACATTGATACTCTAAG+GGG 0.687606 3_4:+54416866 None:intergenic
GTAACGAAGGTGGTTAACGG+TGG 0.742876 3_4:+54416943 None:intergenic
CAATGGGAAAGACATCTCTG+CGG 0.754649 3_4:-54412694 Msa0507190:CDS
TGAAACTTGAATTCTAACGG+TGG 0.756125 3_4:+54416982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTGAATTTTTTTTTT+TGG - chr3_4:54411866-54411885 Msa0507190:intron 10.0%
!!! TTCTTTGAATTTTTTTTTTT+GGG - chr3_4:54411867-54411886 Msa0507190:intron 10.0%
!!! TTTTAAAATTTCAGTATTTT+AGG - chr3_4:54415063-54415082 Msa0507190:intron 10.0%
!!! TTTAAAATTTCAGTATTTTA+GGG - chr3_4:54415064-54415083 Msa0507190:intron 10.0%
!!! TACAAAATTTGATAATTTTT+CGG + chr3_4:54416853-54416872 None:intergenic 10.0%
!! AATTGAAATGAAATTAGTAT+TGG - chr3_4:54411532-54411551 Msa0507190:three_prime_UTR 15.0%
!!! ATAAAGTTTTGAAAATGTTT+AGG - chr3_4:54411736-54411755 Msa0507190:three_prime_UTR 15.0%
!!! TTAAAATTTCAGTATTTTAG+GGG - chr3_4:54415065-54415084 Msa0507190:intron 15.0%
!! AGATGTTACAAAATATTAAA+CGG - chr3_4:54415195-54415214 Msa0507190:intron 15.0%
!! TTGTAAAGTTTATGAATAAT+TGG - chr3_4:54415293-54415312 Msa0507190:intron 15.0%
!!! TTATATAAATAGAAGTGTTT+TGG + chr3_4:54415401-54415420 None:intergenic 15.0%
!! TTCTATTTATATAACTTTGA+GGG - chr3_4:54415407-54415426 Msa0507190:intron 15.0%
!! AATTTCAAAATTGCAAAAAT+GGG + chr3_4:54416004-54416023 None:intergenic 15.0%
!! AAATTTCAAAATTGCAAAAA+TGG + chr3_4:54416005-54416024 None:intergenic 15.0%
!!! ATAATTGTTCTTTTATAGTT+TGG - chr3_4:54416626-54416645 Msa0507190:intron 15.0%
!! AAAACAAAAGAAATGAATTT+CGG + chr3_4:54416981-54417000 None:intergenic 15.0%
!! AATAACTAAAACCATGAAAA+GGG + chr3_4:54411475-54411494 None:intergenic 20.0%
!! AAATAACTAAAACCATGAAA+AGG + chr3_4:54411476-54411495 None:intergenic 20.0%
!! TAAATTCAAATCACAAACAA+TGG - chr3_4:54411995-54412014 Msa0507190:intron 20.0%
!!! AACCTAAAAAGTAGTTTTTT+TGG + chr3_4:54412161-54412180 None:intergenic 20.0%
!! TATAATAGACCAAATACATT+AGG + chr3_4:54412193-54412212 None:intergenic 20.0%
!! CATTGAATACTTAATGTATT+TGG + chr3_4:54412220-54412239 None:intergenic 20.0%
!! GTCAAAAAAACTATATTTAC+AGG + chr3_4:54413047-54413066 None:intergenic 20.0%
!!! TAATTTCTTGTAACCTTTTA+TGG - chr3_4:54413329-54413348 Msa0507190:intron 20.0%
!! TTTGTAAAGATTCATTGAAT+TGG - chr3_4:54413357-54413376 Msa0507190:intron 20.0%
!! TGAATAGACAATTCAATAAA+GGG + chr3_4:54413708-54413727 None:intergenic 20.0%
!!! TTTCTTAAATCAACCAATTT+TGG + chr3_4:54413788-54413807 None:intergenic 20.0%
!! TTTCCATCAAAATTTATTAC+GGG + chr3_4:54413955-54413974 None:intergenic 20.0%
!! CTTTCCATCAAAATTTATTA+CGG + chr3_4:54413956-54413975 None:intergenic 20.0%
!!! TAATAAATTTTGATGGAAAG+TGG - chr3_4:54413956-54413975 Msa0507190:intron 20.0%
!!! AATAAATTTTGATGGAAAGT+GGG - chr3_4:54413957-54413976 Msa0507190:intron 20.0%
!! GTAAACATTAAAGAACAAAA+AGG + chr3_4:54414611-54414630 None:intergenic 20.0%
!! TTTGTTCTTTAATGTTTACA+TGG - chr3_4:54414612-54414631 Msa0507190:intron 20.0%
!! GATGTTACAAAATATTAAAC+GGG - chr3_4:54415196-54415215 Msa0507190:intron 20.0%
!! ATGTTACAAAATATTAAACG+GGG - chr3_4:54415197-54415216 Msa0507190:intron 20.0%
!! CTTCTATTTATATAACTTTG+AGG - chr3_4:54415406-54415425 Msa0507190:intron 20.0%
!! GGTTAAAAAATTTATACGAA+AGG + chr3_4:54415482-54415501 None:intergenic 20.0%
!! AATATGATAAATGTTAAGTG+AGG + chr3_4:54415689-54415708 None:intergenic 20.0%
!! CAAATAGTTTACAAAATTTG+CGG - chr3_4:54415794-54415813 Msa0507190:intron 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - chr3_4:54415863-54415882 Msa0507190:intron 20.0%
!! GTGAAAATGATTTATCAATA+GGG - chr3_4:54415864-54415883 Msa0507190:intron 20.0%
!! AGAAAAAAACAGATTTACAA+AGG + chr3_4:54415952-54415971 None:intergenic 20.0%
!!! CATTATTTTTCGTTTACATT+CGG + chr3_4:54416177-54416196 None:intergenic 20.0%
!! GCTAAATTACATAATGATAT+TGG + chr3_4:54416580-54416599 None:intergenic 20.0%
!!! TAAATATCGTGTAGTTTTAT+CGG - chr3_4:54416954-54416973 Msa0507190:CDS 20.0%
!! AAAAATTCTTACCCTTTTCA+TGG - chr3_4:54411461-54411480 Msa0507190:three_prime_UTR 25.0%
! GATTACATTAAATTATGTCG+AGG - chr3_4:54411679-54411698 Msa0507190:intron 25.0%
!! TTTTCAAAACTTTATGAAGC+AGG + chr3_4:54411731-54411750 None:intergenic 25.0%
! AAAATGTTTAGGAGTAAAGA+TGG - chr3_4:54411747-54411766 Msa0507190:three_prime_UTR 25.0%
! AAATGTTTAGGAGTAAAGAT+GGG - chr3_4:54411748-54411767 Msa0507190:three_prime_UTR 25.0%
! TATACTACTTGAGTGAATTA+AGG - chr3_4:54412093-54412112 Msa0507190:intron 25.0%
!!! TTTTGGCTTATAAATGTGAT+TGG + chr3_4:54412144-54412163 None:intergenic 25.0%
!!! AGCCAAAAAAACTACTTTTT+AGG - chr3_4:54412156-54412175 Msa0507190:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr3_4:54412255-54412274 Msa0507190:intron 25.0%
! TTAGTATTATATACTACCTC+CGG + chr3_4:54412277-54412296 None:intergenic 25.0%
! TGCCTTAAAATAAGCTATTT+GGG - chr3_4:54412955-54412974 Msa0507190:intron 25.0%
! TTTACAAAGAGATCCATAAA+AGG + chr3_4:54413345-54413364 None:intergenic 25.0%
! TAAAGATTCATTGAATTGGA+GGG - chr3_4:54413361-54413380 Msa0507190:intron 25.0%
! CAATCAAAGAACAAAGATAA+AGG + chr3_4:54413461-54413480 None:intergenic 25.0%
! TTTGTTCTTTGATTGAATTG+TGG - chr3_4:54413466-54413485 Msa0507190:CDS 25.0%
!!! ATCACTTTTTTTGTTGTTGA+AGG - chr3_4:54413658-54413677 Msa0507190:intron 25.0%
! GGATATAGAATATAATCACT+TGG - chr3_4:54413679-54413698 Msa0507190:intron 25.0%
! CTGAATAGACAATTCAATAA+AGG + chr3_4:54413709-54413728 None:intergenic 25.0%
! CTTTATTGAATTGTCTATTC+AGG - chr3_4:54413707-54413726 Msa0507190:intron 25.0%
! ATTTAAGAAACAAACCAGAA+TGG - chr3_4:54413798-54413817 Msa0507190:intron 25.0%
! CCAACACAACAATTATTATA+AGG + chr3_4:54413896-54413915 None:intergenic 25.0%
! CCTTATAATAATTGTTGTGT+TGG - chr3_4:54413893-54413912 Msa0507190:intron 25.0%
! AGATTTAATCACACAAACAT+TGG - chr3_4:54413990-54414009 Msa0507190:intron 25.0%
! TTATAGATTTCCTCATCATT+TGG - chr3_4:54414078-54414097 Msa0507190:intron 25.0%
!!! ATATCTAGTTTTCTTGTACA+TGG - chr3_4:54414118-54414137 Msa0507190:intron 25.0%
!!! TGAGTTTTTTGAAAATTGCA+TGG - chr3_4:54414142-54414161 Msa0507190:intron 25.0%
! ACTAAGGAAAAATACATTCA+AGG + chr3_4:54414364-54414383 None:intergenic 25.0%
! TTTCGTTAGTCAATAAGTAT+GGG - chr3_4:54414437-54414456 Msa0507190:CDS 25.0%
! AAGATCTTCTCTACATTTAT+TGG - chr3_4:54414694-54414713 Msa0507190:intron 25.0%
! GCTGAGACAAAAATAAAAAA+GGG + chr3_4:54415025-54415044 None:intergenic 25.0%
! AGCTGAGACAAAAATAAAAA+AGG + chr3_4:54415026-54415045 None:intergenic 25.0%
! ACACTACAAGAAAAGTTATA+GGG + chr3_4:54415141-54415160 None:intergenic 25.0%
! ACATCTTATGTATATACAAG+AGG + chr3_4:54415181-54415200 None:intergenic 25.0%
! TGAAAAGAAAAAATTTGCAC+AGG + chr3_4:54415503-54415522 None:intergenic 25.0%
!!! TGCAAATTTTTTCTTTTCAC+AGG - chr3_4:54415504-54415523 Msa0507190:intron 25.0%
!!! GCAAATTTTTTCTTTTCACA+GGG - chr3_4:54415505-54415524 Msa0507190:intron 25.0%
!! TTTGGGACATTATAAGAAAT+GGG - chr3_4:54415603-54415622 Msa0507190:intron 25.0%
!! CATATTCTTGTACTTTTAGA+CGG - chr3_4:54415703-54415722 Msa0507190:intron 25.0%
! ATGAAACTGCATCATAAATA+CGG + chr3_4:54415769-54415788 None:intergenic 25.0%
!!! GCTCTAAATTCAAAAGTTTT+TGG - chr3_4:54415913-54415932 Msa0507190:intron 25.0%
!! TTTTCTTCATATATTCGAAG+AGG - chr3_4:54415966-54415985 Msa0507190:intron 25.0%
! ATTACATATGAGACAAGTAA+CGG + chr3_4:54416297-54416316 None:intergenic 25.0%
! AAACAAAGGAAATTTCATCA+AGG + chr3_4:54416323-54416342 None:intergenic 25.0%
! GCAAACTGTAAAATAAACAA+AGG + chr3_4:54416337-54416356 None:intergenic 25.0%
! TCTAATAATGTTGAACTTAC+AGG - chr3_4:54416361-54416380 Msa0507190:intron 25.0%
! AATATATACTCAACTAGAGT+CGG + chr3_4:54416529-54416548 None:intergenic 25.0%
TGCTGAAACTTGAATTCTAA+CGG + chr3_4:54411255-54411274 None:intergenic 30.0%
AGAAGACATTGATACTCTAA+GGG + chr3_4:54411369-54411388 None:intergenic 30.0%
! ATTAGTATTGGAGACATTGA+TGG - chr3_4:54411544-54411563 Msa0507190:three_prime_UTR 30.0%
!! ATGGTATTGGTAGAAAGAAT+AGG - chr3_4:54411563-54411582 Msa0507190:three_prime_UTR 30.0%
!! TGGTATTGGTAGAAAGAATA+GGG - chr3_4:54411564-54411583 Msa0507190:three_prime_UTR 30.0%
AATAATCTGTTGCATAGACT+GGG - chr3_4:54411600-54411619 Msa0507190:intron 30.0%
AATGTTTAGGAGTAAAGATG+GGG - chr3_4:54411749-54411768 Msa0507190:three_prime_UTR 30.0%
TAAAATCAAATCCTACCCTT+GGG + chr3_4:54411944-54411963 None:intergenic 30.0%
ATAAAATCAAATCCTACCCT+TGG + chr3_4:54411945-54411964 None:intergenic 30.0%
AATTCACTCAAGTAGTATAC+AGG + chr3_4:54412092-54412111 None:intergenic 30.0%
TGAATTAAGGTTTACAACGT+TGG - chr3_4:54412106-54412125 Msa0507190:intron 30.0%
CATTGAATGCCTAATGTATT+TGG - chr3_4:54412181-54412200 Msa0507190:intron 30.0%
GGAGGTAGTATATAATACTA+AGG - chr3_4:54412276-54412295 Msa0507190:intron 30.0%
TCAGGGATAATGTTGTAATA+TGG + chr3_4:54412303-54412322 None:intergenic 30.0%
TACTGTTCATGTATTGTGTA+CGG + chr3_4:54412485-54412504 None:intergenic 30.0%
ATACATGAACAGTAACCAAA+TGG - chr3_4:54412491-54412510 Msa0507190:intron 30.0%
AAGTAATTCGGAATTTGATC+AGG + chr3_4:54412605-54412624 None:intergenic 30.0%
TGATCAAATTCCGAATTACT+TGG - chr3_4:54412604-54412623 Msa0507190:CDS 30.0%
AAAAAGGAGTCCAAGTAATT+CGG + chr3_4:54412617-54412636 None:intergenic 30.0%
GCTGGTCATATATGATTTAT+TGG + chr3_4:54412658-54412677 None:intergenic 30.0%
! TCTAAAATTTAGCTAGTAGC+TGG + chr3_4:54412676-54412695 None:intergenic 30.0%
!! TGTGTTTTTGCTTTAGTTCA+TGG - chr3_4:54412819-54412838 Msa0507190:intron 30.0%
TATGATTCCAAGACAAAGAT+GGG + chr3_4:54412865-54412884 None:intergenic 30.0%
ATTTCTGTTTGCATTTGTAG+AGG - chr3_4:54412928-54412947 Msa0507190:intron 30.0%
GTGCCTTAAAATAAGCTATT+TGG - chr3_4:54412954-54412973 Msa0507190:intron 30.0%
GCCTTAAAATAAGCTATTTG+GGG - chr3_4:54412956-54412975 Msa0507190:intron 30.0%
!!! ACCCCAAATAGCTTATTTTA+AGG + chr3_4:54412960-54412979 None:intergenic 30.0%
AGAAAATAGAATCTAGAGAG+AGG - chr3_4:54413072-54413091 Msa0507190:intron 30.0%
GAAAATAGAATCTAGAGAGA+GGG - chr3_4:54413073-54413092 Msa0507190:intron 30.0%
GTAAAGATTCATTGAATTGG+AGG - chr3_4:54413360-54413379 Msa0507190:intron 30.0%
AATAATTTGATTACCCGGTT+TGG + chr3_4:54413420-54413439 None:intergenic 30.0%
AAACCGGGTAATCAAATTAT+TGG - chr3_4:54413419-54413438 Msa0507190:intron 30.0%
AGACCAATAATTTGATTACC+CGG + chr3_4:54413425-54413444 None:intergenic 30.0%
TGTGGATTTACTATACATCT+AGG - chr3_4:54413484-54413503 Msa0507190:CDS 30.0%
! TAGGTTGCTAGATTTACTTT+TGG - chr3_4:54413503-54413522 Msa0507190:CDS 30.0%
TTTGGTTGATTACTATTGCT+TGG - chr3_4:54413521-54413540 Msa0507190:CDS 30.0%
TTTACCTTATGAGCCAAAAT+TGG - chr3_4:54413772-54413791 Msa0507190:intron 30.0%
!! AATAATTGTTGTGTTGGTTC+AGG - chr3_4:54413899-54413918 Msa0507190:intron 30.0%
! GTTCCCGTAATAAATTTTGA+TGG - chr3_4:54413949-54413968 Msa0507190:intron 30.0%
TTTAATCACACAAACATTGG+AGG - chr3_4:54413993-54414012 Msa0507190:intron 30.0%
ACAATATCTGACAGATTCAA+GGG + chr3_4:54414296-54414315 None:intergenic 30.0%
! TTTGATATACTCATCGACTA+TGG + chr3_4:54414328-54414347 None:intergenic 30.0%
TGCAAAGAACAAATTGACTA+AGG + chr3_4:54414380-54414399 None:intergenic 30.0%
TATATCTTCCGTAGTCAATT+TGG - chr3_4:54414400-54414419 Msa0507190:intron 30.0%
CTTTCGTTAGTCAATAAGTA+TGG - chr3_4:54414436-54414455 Msa0507190:CDS 30.0%
ATAGCTGAGACAAAAATAGA+TGG + chr3_4:54414824-54414843 None:intergenic 30.0%
! ATTTTTGTCTCAGCTATTTG+AGG - chr3_4:54414827-54414846 Msa0507190:intron 30.0%
! TTTTTGTCTCAGCTATTTGA+GGG - chr3_4:54414828-54414847 Msa0507190:intron 30.0%
AAAAATAAAAAAGGGCAACC+CGG + chr3_4:54415017-54415036 None:intergenic 30.0%
CACACTACAAGAAAAGTTAT+AGG + chr3_4:54415142-54415161 None:intergenic 30.0%
AAATGATAGACAAATCCAGA+AGG + chr3_4:54415453-54415472 None:intergenic 30.0%
ATGTCTTTCCCATTGATAAA+AGG + chr3_4:54415532-54415551 None:intergenic 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3_4:54415602-54415621 Msa0507190:intron 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3_4:54415647-54415666 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3_4:54415645-54415664 Msa0507190:intron 30.0%
ATGATAAATGTTAAGTGAGG+AGG + chr3_4:54415686-54415705 None:intergenic 30.0%
TGAAACTGCATCATAAATAC+GGG + chr3_4:54415768-54415787 None:intergenic 30.0%
TTAGAAGAAACTCCAAATTC+AGG + chr3_4:54415893-54415912 None:intergenic 30.0%
!!! AAGTTTTTGGTAATGTGCTT+TGG - chr3_4:54415926-54415945 Msa0507190:intron 30.0%
!! AAAATTGCAAAAATGGGCTA+GGG + chr3_4:54415998-54416017 None:intergenic 30.0%
! ATTTGTAAGGTAAAAGTGTG+AGG + chr3_4:54416061-54416080 None:intergenic 30.0%
CTTGTGTCATACTATTTGTA+AGG + chr3_4:54416074-54416093 None:intergenic 30.0%
!!! CACAAAAGTTGGTATTTTAC+CGG + chr3_4:54416148-54416167 None:intergenic 30.0%
! AACAATTATGCTCTAGTTCA+TGG + chr3_4:54416615-54416634 None:intergenic 30.0%
!! CCACAGATTTTAACATGTTA+GGG - chr3_4:54416649-54416668 Msa0507190:intron 30.0%
ATGTAGAGCAAAAGGATTAA+GGG - chr3_4:54416686-54416705 Msa0507190:intron 30.0%
TTTATTAAGACCAAGGTCAA+TGG + chr3_4:54416786-54416805 None:intergenic 30.0%
TGAAACTTGAATTCTAACGG+TGG + chr3_4:54411252-54411271 None:intergenic 35.0%
GAAGACATTGATACTCTAAG+GGG + chr3_4:54411368-54411387 None:intergenic 35.0%
CAGAAGACATTGATACTCTA+AGG + chr3_4:54411370-54411389 None:intergenic 35.0%
TTACAGTCTCCAATCTTGTT+AGG + chr3_4:54411443-54411462 None:intergenic 35.0%
! ATTGGAGACATTGATGGTAT+TGG - chr3_4:54411550-54411569 Msa0507190:three_prime_UTR 35.0%
GAATAATCTGTTGCATAGAC+TGG - chr3_4:54411599-54411618 Msa0507190:intron 35.0%
ATGTTTAGGAGTAAAGATGG+GGG - chr3_4:54411750-54411769 Msa0507190:three_prime_UTR 35.0%
AGAGAGGTAAAAAACACACT+TGG + chr3_4:54412049-54412068 None:intergenic 35.0%
TGGCTTATAAATGTGATTGG+AGG + chr3_4:54412141-54412160 None:intergenic 35.0%
ATGTATTGTGTACGGTTCAT+AGG + chr3_4:54412477-54412496 None:intergenic 35.0%
ATCCAAGTTCAAATTCTGAC+CGG - chr3_4:54412550-54412569 Msa0507190:intron 35.0%
TAATTCGGAATTTGATCAGG+AGG + chr3_4:54412602-54412621 None:intergenic 35.0%
! TTACTTGGACTCCTTTTTCT+CGG - chr3_4:54412619-54412638 Msa0507190:CDS 35.0%
TGTGTATGTGTTGAAGATAC+AGG - chr3_4:54412715-54412734 Msa0507190:intron 35.0%
! TTGCTTTAGTTCATGGATGT+AGG - chr3_4:54412826-54412845 Msa0507190:intron 35.0%
CTATGATTCCAAGACAAAGA+TGG + chr3_4:54412866-54412885 None:intergenic 35.0%
AGTTAGGAATCATTAGAGGA+AGG - chr3_4:54413173-54413192 Msa0507190:intron 35.0%
GTTAGGAATCATTAGAGGAA+GGG - chr3_4:54413174-54413193 Msa0507190:intron 35.0%
TTGAGTCATTCATCTTTGAG+TGG - chr3_4:54413220-54413239 Msa0507190:intron 35.0%
TGAGTCATTCATCTTTGAGT+GGG - chr3_4:54413221-54413240 Msa0507190:intron 35.0%
ATCTCTCTTTGTGAGCAATT+GGG - chr3_4:54413272-54413291 Msa0507190:intron 35.0%
TGGGGATAAGTGTAGAAATT+AGG - chr3_4:54413291-54413310 Msa0507190:intron 35.0%
! TACTATTGCTTGGACTGTTT+TGG - chr3_4:54413531-54413550 Msa0507190:CDS 35.0%
ACAGCATTTGAGTCTAAACT+TGG - chr3_4:54413618-54413637 Msa0507190:intron 35.0%
!!! TCAACCAATTTTGGCTCATA+AGG + chr3_4:54413779-54413798 None:intergenic 35.0%
!! TAGAAAAAGTTGATGGCTTG+TGG + chr3_4:54413854-54413873 None:intergenic 35.0%
ACGACGATAGAAAAAGTTGA+TGG + chr3_4:54413861-54413880 None:intergenic 35.0%
! CAAAGTATCTCCAAATGATG+AGG + chr3_4:54414091-54414110 None:intergenic 35.0%
AGTATAGCAGGGTAACATAT+AGG + chr3_4:54414235-54414254 None:intergenic 35.0%
TGACATTGATGAGTATAGCA+GGG + chr3_4:54414246-54414265 None:intergenic 35.0%
TTGACATTGATGAGTATAGC+AGG + chr3_4:54414247-54414266 None:intergenic 35.0%
GACAATATCTGACAGATTCA+AGG + chr3_4:54414297-54414316 None:intergenic 35.0%
TCCAAAGACCAAATTGACTA+CGG + chr3_4:54414411-54414430 None:intergenic 35.0%
TGACACCATCTTACACATTT+AGG - chr3_4:54414565-54414584 Msa0507190:intron 35.0%
GACACCATCTTACACATTTA+GGG - chr3_4:54414566-54414585 Msa0507190:intron 35.0%
TGATCCCTAAATGTGTAAGA+TGG + chr3_4:54414573-54414592 None:intergenic 35.0%
!! GCATGTGTTTTTGTCTATAG+TGG - chr3_4:54414667-54414686 Msa0507190:intron 35.0%
AAAAGCAAAGATCCCAATGA+CGG - chr3_4:54414724-54414743 Msa0507190:intron 35.0%
! AGAGTCATACATTTTCCTTG+AGG + chr3_4:54414795-54414814 None:intergenic 35.0%
! TTTTGTCTCAGCTATTTGAG+GGG - chr3_4:54414829-54414848 Msa0507190:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr3_4:54414870-54414889 Msa0507190:intron 35.0%
! CTTTTCCTGCATTATTGTCA+TGG - chr3_4:54415114-54415133 Msa0507190:intron 35.0%
! TTTTCTTATCTCGATCCTTC+TGG - chr3_4:54415435-54415454 Msa0507190:intron 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3_4:54415580-54415599 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3_4:54415585-54415604 Msa0507190:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3_4:54415586-54415605 Msa0507190:intron 35.0%
TGTCTATGCTTAAAGATCAC+AGG - chr3_4:54415834-54415853 Msa0507190:intron 35.0%
! CAAAATTGCAAAAATGGGCT+AGG + chr3_4:54415999-54416018 None:intergenic 35.0%
ACTACTCAAATGTTTCCGTA+AGG - chr3_4:54416030-54416049 Msa0507190:intron 35.0%
CTACTCAAATGTTTCCGTAA+GGG - chr3_4:54416031-54416050 Msa0507190:intron 35.0%
TACTCAAATGTTTCCGTAAG+GGG - chr3_4:54416032-54416051 Msa0507190:intron 35.0%
TTCGGTAATTGCACAAAAGT+TGG + chr3_4:54416159-54416178 None:intergenic 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3_4:54416375-54416394 Msa0507190:intron 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3_4:54416376-54416395 Msa0507190:intron 35.0%
TATCATCAACCCTCTACTTT+AGG + chr3_4:54416455-54416474 None:intergenic 35.0%
GAAAGAAAAGAGTAGATGAG+TGG + chr3_4:54416479-54416498 None:intergenic 35.0%
TCATTTGCTTGAGTCTCTTA+AGG - chr3_4:54416497-54416516 Msa0507190:intron 35.0%
ATTGGTATTCAACTCTACAG+TGG + chr3_4:54416562-54416581 None:intergenic 35.0%
!! GCCACAGATTTTAACATGTT+AGG - chr3_4:54416648-54416667 Msa0507190:intron 35.0%
CCCTAACATGTTAAAATCTG+TGG + chr3_4:54416652-54416671 None:intergenic 35.0%
!! GATTTTAACATGTTAGGGAG+AGG - chr3_4:54416654-54416673 Msa0507190:intron 35.0%
CATGTAGAGCAAAAGGATTA+AGG - chr3_4:54416685-54416704 Msa0507190:intron 35.0%
!! GACCTTGGTCTTAATAAAAG+AGG - chr3_4:54416788-54416807 Msa0507190:CDS 35.0%
! TGCCTCTTTTATTAAGACCA+AGG + chr3_4:54416793-54416812 None:intergenic 35.0%
TTTGAACTGATGTTGAGGTA+GGG + chr3_4:54416821-54416840 None:intergenic 35.0%
! TTTTGAACTGATGTTGAGGT+AGG + chr3_4:54416822-54416841 None:intergenic 35.0%
TACCTCAACATCAGTTCAAA+AGG - chr3_4:54416821-54416840 Msa0507190:CDS 35.0%
! ATCCTTTTGAACTGATGTTG+AGG + chr3_4:54416826-54416845 None:intergenic 35.0%
GTTGAAGGAGCTAGTTGAAA+CGG + chr3_4:54411327-54411346 None:intergenic 40.0%
TCAACTAGCTCCTTCAACAA+CGG - chr3_4:54411329-54411348 Msa0507190:three_prime_UTR 40.0%
AATGCTGAAACCGTTGTTGA+AGG + chr3_4:54411342-54411361 None:intergenic 40.0%
GCTTTAACAGCAACTTCCAA+TGG + chr3_4:54411407-54411426 None:intergenic 40.0%
TGTTTAGGAGTAAAGATGGG+GGG - chr3_4:54411751-54411770 Msa0507190:three_prime_UTR 40.0%
GATCGTTTGTTTCCGCAATT+CGG - chr3_4:54412023-54412042 Msa0507190:intron 40.0%
CAACTACTCTATAGTCAGAG+AGG + chr3_4:54412065-54412084 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr3_4:54412258-54412277 Msa0507190:intron 40.0%
ATTATCCCTGAAACGTACAG+CGG - chr3_4:54412312-54412331 Msa0507190:intron 40.0%
GGTTCATAGGCACAAAAGAA+GGG + chr3_4:54412464-54412483 None:intergenic 40.0%
TCAGGAGCTCATTAACCATT+TGG + chr3_4:54412509-54412528 None:intergenic 40.0%
CCTGACAAGGTCAATTGAAT+CGG - chr3_4:54412524-54412543 Msa0507190:intron 40.0%
TTCCGGTCAGAATTTGAACT+TGG + chr3_4:54412555-54412574 None:intergenic 40.0%
AGTCTGGTCAAGAAATGTTC+CGG + chr3_4:54412572-54412591 None:intergenic 40.0%
ATCAGGAGGTAAGTAAAGTC+TGG + chr3_4:54412588-54412607 None:intergenic 40.0%
TAGTTCATGGATGTAGGCAA+TGG - chr3_4:54412832-54412851 Msa0507190:intron 40.0%
CAATACACCCATCTTTGTCT+TGG - chr3_4:54412855-54412874 Msa0507190:intron 40.0%
! TCTAGGGTTGTGAAACACTT+TGG - chr3_4:54413148-54413167 Msa0507190:intron 40.0%
CTAGGGTTGTGAAACACTTT+GGG - chr3_4:54413149-54413168 Msa0507190:intron 40.0%
GTGAAACACTTTGGGTAGTT+AGG - chr3_4:54413157-54413176 Msa0507190:intron 40.0%
GGGTAGTTAGGAATCATTAG+AGG - chr3_4:54413169-54413188 Msa0507190:intron 40.0%
AGAACTCACTAGAGAAAGCT+TGG + chr3_4:54413201-54413220 None:intergenic 40.0%
GATCTCTCTTTGTGAGCAAT+TGG - chr3_4:54413271-54413290 Msa0507190:intron 40.0%
TCTCTCTTTGTGAGCAATTG+GGG - chr3_4:54413273-54413292 Msa0507190:intron 40.0%
TAGGTGAATTTGTGCCAAAC+CGG - chr3_4:54413403-54413422 Msa0507190:intron 40.0%
TCACATCAAGACAGTGATTG+TGG + chr3_4:54413582-54413601 None:intergenic 40.0%
GCAACACTCTTTGGCTAAAA+GGG + chr3_4:54413733-54413752 None:intergenic 40.0%
AGCAACACTCTTTGGCTAAA+AGG + chr3_4:54413734-54413753 None:intergenic 40.0%
TGTGGTCTGTAAGTGAAACA+TGG + chr3_4:54413836-54413855 None:intergenic 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3_4:54413922-54413941 Msa0507190:intron 40.0%
! TACTCATCGACTATGGTGAT+TGG + chr3_4:54414321-54414340 None:intergenic 40.0%
! TCCGTAGTCAATTTGGTCTT+TGG - chr3_4:54414407-54414426 Msa0507190:intron 40.0%
TTCCTTGAGGTAATCGTTGA+AGG + chr3_4:54414782-54414801 None:intergenic 40.0%
AGCCTCTTGTGTAAAAAGCA+GGG - chr3_4:54414920-54414939 Msa0507190:intron 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG + chr3_4:54414925-54414944 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG - chr3_4:54414925-54414944 Msa0507190:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_4:54414951-54414970 Msa0507190:intron 40.0%
! TCACAGGGTCCTTTTATCAA+TGG - chr3_4:54415520-54415539 Msa0507190:intron 40.0%
! CACAGGGTCCTTTTATCAAT+GGG - chr3_4:54415521-54415540 Msa0507190:intron 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3_4:54415567-54415586 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3_4:54415573-54415592 Msa0507190:intron 40.0%
TCAATAGGGAGACCTGAATT+TGG - chr3_4:54415878-54415897 Msa0507190:intron 40.0%
CAATCGGTATTTGCACAGAA+GGG + chr3_4:54416097-54416116 None:intergenic 40.0%
! GTGCAAATACCGATTGCTAA+AGG - chr3_4:54416101-54416120 Msa0507190:intron 40.0%
! TGAAGCACTCCTTTAGCAAT+CGG + chr3_4:54416113-54416132 None:intergenic 40.0%
!! AGTTGGTATTTTACCGGCTA+CGG + chr3_4:54416142-54416161 None:intergenic 40.0%
AACAGATCATCTAGGGATCA+GGG + chr3_4:54416265-54416284 None:intergenic 40.0%
CACAGACAACAGATCATCTA+GGG + chr3_4:54416272-54416291 None:intergenic 40.0%
ACACAGACAACAGATCATCT+AGG + chr3_4:54416273-54416292 None:intergenic 40.0%
CAACCTTCAATGACATCATC+CGG + chr3_4:54416428-54416447 None:intergenic 40.0%
TAGAGCAAAAGGATTAAGGG+AGG - chr3_4:54416689-54416708 Msa0507190:intron 40.0%
AGAGCAAAAGGATTAAGGGA+GGG - chr3_4:54416690-54416709 Msa0507190:intron 40.0%
ACGGTAACGAAGGTGGTTAA+CGG + chr3_4:54411294-54411313 None:intergenic 45.0%
CTTACCACGCCTAACAAGAT+TGG - chr3_4:54411431-54411450 Msa0507190:three_prime_UTR 45.0%
GTAGAAAGAATAGGGCAGTG+TGG - chr3_4:54411572-54411591 Msa0507190:three_prime_UTR 45.0%
ATGTCGACACTTGTCGGATA+CGG + chr3_4:54411649-54411668 None:intergenic 45.0%
ATACTGATACCCTCTACCCA+AGG - chr3_4:54411925-54411944 Msa0507190:intron 45.0%
TACTGATACCCTCTACCCAA+GGG - chr3_4:54411926-54411945 Msa0507190:intron 45.0%
AAATCCTACCCTTGGGTAGA+GGG + chr3_4:54411937-54411956 None:intergenic 45.0%
AAACACACTTGGCCGAATTG+CGG + chr3_4:54412038-54412057 None:intergenic 45.0%
TTATCCCTGAAACGTACAGC+GGG - chr3_4:54412313-54412332 Msa0507190:intron 45.0%
! AAGCCCAACTGTTTGTTGCA+GGG + chr3_4:54412366-54412385 None:intergenic 45.0%
! TAAGCCCAACTGTTTGTTGC+AGG + chr3_4:54412367-54412386 None:intergenic 45.0%
TTTGGGCCAAATGCAAGGAA+GGG - chr3_4:54412394-54412413 Msa0507190:intron 45.0%
CTTTCACCCTTCCTTGCATT+TGG + chr3_4:54412403-54412422 None:intergenic 45.0%
CAAATGCAAGGAAGGGTGAA+AGG - chr3_4:54412401-54412420 Msa0507190:intron 45.0%
TAGGCACAAAAGAAGGGCAA+GGG + chr3_4:54412458-54412477 None:intergenic 45.0%
ATAGGCACAAAAGAAGGGCA+AGG + chr3_4:54412459-54412478 None:intergenic 45.0%
CGGTTCATAGGCACAAAAGA+AGG + chr3_4:54412465-54412484 None:intergenic 45.0%
TGGTTAATGAGCTCCTGACA+AGG - chr3_4:54412511-54412530 Msa0507190:intron 45.0%
CCGATTCAATTGACCTTGTC+AGG + chr3_4:54412527-54412546 None:intergenic 45.0%
! GACTCCTTTTTCTCGGAACA+GGG - chr3_4:54412626-54412645 Msa0507190:CDS 45.0%
CTAACCCTGTTCCGAGAAAA+AGG + chr3_4:54412633-54412652 None:intergenic 45.0%
! CTTTTTCTCGGAACAGGGTT+AGG - chr3_4:54412631-54412650 Msa0507190:CDS 45.0%
! AAGCTATTTGGGGTTTCTGC+TGG - chr3_4:54412966-54412985 Msa0507190:intron 45.0%
GAATCTAGAGAGAGGGAACA+CGG - chr3_4:54413080-54413099 Msa0507190:intron 45.0%
AGGGAACACGGAAAAACCTA+GGG - chr3_4:54413092-54413111 Msa0507190:intron 45.0%
! AACCTAGGGTTTGAGTGTTG+AGG - chr3_4:54413106-54413125 Msa0507190:intron 45.0%
!! ACCTAGGGTTTGAGTGTTGA+GGG - chr3_4:54413107-54413126 Msa0507190:intron 45.0%
!! TTTGAGTGTTGAGGGCTCTT+GGG - chr3_4:54413115-54413134 Msa0507190:intron 45.0%
TCTTGGGTGAGGTTCTATCT+AGG - chr3_4:54413131-54413150 Msa0507190:intron 45.0%
CTTGGGTGAGGTTCTATCTA+GGG - chr3_4:54413132-54413151 Msa0507190:intron 45.0%
!! ATCTTTGAGTGGGTTGAGAG+AGG - chr3_4:54413231-54413250 Msa0507190:intron 45.0%
ACAAATTCACCTACGTCTGG+GGG + chr3_4:54413396-54413415 None:intergenic 45.0%
CACAAATTCACCTACGTCTG+GGG + chr3_4:54413397-54413416 None:intergenic 45.0%
GCACAAATTCACCTACGTCT+GGG + chr3_4:54413398-54413417 None:intergenic 45.0%
AGGTGAATTTGTGCCAAACC+GGG - chr3_4:54413404-54413423 Msa0507190:intron 45.0%
!!! GCTTGGACTGTTTTGGTTGT+TGG - chr3_4:54413538-54413557 Msa0507190:CDS 45.0%
GGACAAGAAGATCACCATTC+TGG + chr3_4:54413815-54413834 None:intergenic 45.0%
! TGCCTTCAGGACTGATTTCA+AGG + chr3_4:54413927-54413946 None:intergenic 45.0%
ATTACGGGAACTTTGCCTTC+AGG + chr3_4:54413940-54413959 None:intergenic 45.0%
!!! TTTTCAGGTGGTGTCACCAA+TGG + chr3_4:54414036-54414055 None:intergenic 45.0%
! ATTGGTGACACCACCTGAAA+AGG - chr3_4:54414035-54414054 Msa0507190:intron 45.0%
! ACTTACGCTGTAGCCTTTTC+AGG + chr3_4:54414051-54414070 None:intergenic 45.0%
GCTTGTTCTGTTCCGTCATT+GGG + chr3_4:54414739-54414758 None:intergenic 45.0%
TGCTTGTTCTGTTCCGTCAT+TGG + chr3_4:54414740-54414759 None:intergenic 45.0%
CTCCTTCAACGATTACCTCA+AGG - chr3_4:54414777-54414796 Msa0507190:intron 45.0%
AGCTATTTGAGGGGTAACCT+TGG - chr3_4:54414838-54414857 Msa0507190:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr3_4:54414874-54414893 Msa0507190:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr3_4:54414914-54414933 None:intergenic 45.0%
CAGCCTCTTGTGTAAAAAGC+AGG - chr3_4:54414919-54414938 Msa0507190:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_4:54414947-54414966 Msa0507190:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr3_4:54414950-54414969 Msa0507190:intron 45.0%
GCAGGAAAAGATGTAATGCC+AGG + chr3_4:54415104-54415123 None:intergenic 45.0%
AGGGTCCATGACAATAATGC+AGG + chr3_4:54415122-54415141 None:intergenic 45.0%
CAATGGGAAAGACATCTCTG+CGG - chr3_4:54415537-54415556 Msa0507190:intron 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3_4:54415591-54415610 None:intergenic 45.0%
TTCAAAAAGGTCAGCGAGTC+AGG + chr3_4:54415634-54415653 None:intergenic 45.0%
GCAATCGGTATTTGCACAGA+AGG + chr3_4:54416098-54416117 None:intergenic 45.0%
TGCTTCATAACAACCGTAGC+CGG - chr3_4:54416126-54416145 Msa0507190:intron 45.0%
ACAGATCATCTAGGGATCAG+GGG + chr3_4:54416264-54416283 None:intergenic 45.0%
CAACAGATCATCTAGGGATC+AGG + chr3_4:54416266-54416285 None:intergenic 45.0%
CGGATGATGTCATTGAAGGT+TGG - chr3_4:54416426-54416445 Msa0507190:intron 45.0%
! CTTTTGCTCTACATGCTTCC+TGG + chr3_4:54416680-54416699 None:intergenic 45.0%
! CAGGAAGCATGTAGAGCAAA+AGG - chr3_4:54416678-54416697 Msa0507190:intron 45.0%
! GGCACATCAGCACTAGTTTA+AGG + chr3_4:54416765-54416784 None:intergenic 45.0%
!! ATATATATATATATATATTC+AGG - chr3_4:54414534-54414553 Msa0507190:intron 5.0%
GTAACGAAGGTGGTTAACGG+TGG + chr3_4:54411291-54411310 None:intergenic 50.0%
TTGAAACGGCGTAGCTTGGA+CGG + chr3_4:54411313-54411332 None:intergenic 50.0%
CTAGTTGAAACGGCGTAGCT+TGG + chr3_4:54411317-54411336 None:intergenic 50.0%
TGTTCCTCCTTCTGAGCCAT+TGG - chr3_4:54411388-54411407 Msa0507190:three_prime_UTR 50.0%
ACTTCCAATGGCTCAGAAGG+AGG + chr3_4:54411395-54411414 None:intergenic 50.0%
GCAACTTCCAATGGCTCAGA+AGG + chr3_4:54411398-54411417 None:intergenic 50.0%
GTCTCCAATCTTGTTAGGCG+TGG + chr3_4:54411438-54411457 None:intergenic 50.0%
TGCATAGACTGGGACACTTC+TGG - chr3_4:54411610-54411629 Msa0507190:intron 50.0%
! ACTGGGACACTTCTGGTTGA+AGG - chr3_4:54411617-54411636 Msa0507190:intron 50.0%
TGTCGACACTTGTCGGATAC+GGG + chr3_4:54411648-54411667 None:intergenic 50.0%
! GTGTCGATGTCGACACTTGT+CGG + chr3_4:54411655-54411674 None:intergenic 50.0%
CAAATCCTACCCTTGGGTAG+AGG + chr3_4:54411938-54411957 None:intergenic 50.0%
TATCCCTGAAACGTACAGCG+GGG - chr3_4:54412314-54412333 Msa0507190:intron 50.0%
GCTCCCTGCAACAAACAGTT+GGG - chr3_4:54412360-54412379 Msa0507190:intron 50.0%
AGTTGGGCTTAACGCACGTT+TGG - chr3_4:54412376-54412395 Msa0507190:intron 50.0%
GTTGGGCTTAACGCACGTTT+GGG - chr3_4:54412377-54412396 Msa0507190:intron 50.0%
GTTTGGGCCAAATGCAAGGA+AGG - chr3_4:54412393-54412412 Msa0507190:intron 50.0%
! GGACTCCTTTTTCTCGGAAC+AGG - chr3_4:54412625-54412644 Msa0507190:CDS 50.0%
GAGGGAACACGGAAAAACCT+AGG - chr3_4:54413091-54413110 Msa0507190:intron 50.0%
!! GTTTGAGTGTTGAGGGCTCT+TGG - chr3_4:54413114-54413133 Msa0507190:intron 50.0%
GGCACAAATTCACCTACGTC+TGG + chr3_4:54413399-54413418 None:intergenic 50.0%
CCAGTGTCAGCAACACTCTT+TGG + chr3_4:54413742-54413761 None:intergenic 50.0%
!! CCAAAGAGTGTTGCTGACAC+TGG - chr3_4:54413739-54413758 Msa0507190:intron 50.0%
!! AAGAGTGTTGCTGACACTGG+AGG - chr3_4:54413742-54413761 Msa0507190:intron 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3_4:54414017-54414036 Msa0507190:intron 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3_4:54414048-54414067 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3_4:54414858-54414877 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr3_4:54414880-54414899 Msa0507190:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr3_4:54414881-54414900 Msa0507190:intron 50.0%
TGTAGTGTGCATCGCTTAGC+TGG - chr3_4:54415153-54415172 Msa0507190:intron 50.0%
AAAGGTCAGCGAGTCAGGTA+CGG + chr3_4:54415629-54415648 None:intergenic 50.0%
AAGTGTGAGGAAGCCCCTTA+CGG + chr3_4:54416048-54416067 None:intergenic 50.0%
CAGCCGGATGATGTCATTGA+AGG - chr3_4:54416422-54416441 Msa0507190:intron 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3_4:54416442-54416461 Msa0507190:intron 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3_4:54416443-54416462 Msa0507190:intron 50.0%
TAACATGTTAGGGAGAGGCC+AGG - chr3_4:54416659-54416678 Msa0507190:intron 50.0%
! TGCTGATGTGCCATTGACCT+TGG - chr3_4:54416773-54416792 Msa0507190:CDS 50.0%
ACGAAGGTGGTTAACGGTGG+CGG + chr3_4:54411288-54411307 None:intergenic 55.0%
AGCTTGGACGGTAACGAAGG+TGG + chr3_4:54411301-54411320 None:intergenic 55.0%
CGTAGCTTGGACGGTAACGA+AGG + chr3_4:54411304-54411323 None:intergenic 55.0%
GATACCCTCTACCCAAGGGT+AGG - chr3_4:54411930-54411949 Msa0507190:intron 55.0%
ATCCCTGAAACGTACAGCGG+GGG - chr3_4:54412315-54412334 Msa0507190:intron 55.0%
CGCTCCCTGCAACAAACAGT+TGG - chr3_4:54412359-54412378 Msa0507190:intron 55.0%
GCACGTTTGGGCCAAATGCA+AGG - chr3_4:54412389-54412408 Msa0507190:intron 55.0%
AAGGGCAAGGGAGTTGAGCT+AGG + chr3_4:54412446-54412465 None:intergenic 55.0%
GCCCTCAACACTCAAACCCT+AGG + chr3_4:54413111-54413130 None:intergenic 55.0%
!! CAGGTGGTGTCACCAATGGT+GGG + chr3_4:54414032-54414051 None:intergenic 55.0%
!! TCAGGTGGTGTCACCAATGG+TGG + chr3_4:54414033-54414052 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr3_4:54414893-54414912 Msa0507190:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr3_4:54414990-54415009 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr3_4:54414991-54415010 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr3_4:54414995-54415014 Msa0507190:intron 55.0%
AGGGGTCTCAATCTCTGACC+TGG - chr3_4:54415083-54415102 Msa0507190:intron 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3_4:54415553-54415572 Msa0507190:intron 55.0%
CATCAACACACGTGCACAGC+CGG - chr3_4:54416406-54416425 Msa0507190:intron 55.0%
AGCCCCCGCTGTACGTTTCA+GGG + chr3_4:54412320-54412339 None:intergenic 60.0%
TAGCCCCCGCTGTACGTTTC+AGG + chr3_4:54412321-54412340 None:intergenic 60.0%
AGGGAGCGACTACTGTGCAG+GGG + chr3_4:54412347-54412366 None:intergenic 60.0%
CAGGGAGCGACTACTGTGCA+GGG + chr3_4:54412348-54412367 None:intergenic 60.0%
GTGTTGAGGGCTCTTGGGTG+AGG - chr3_4:54413120-54413139 Msa0507190:intron 60.0%
TCACCTACGTCTGGGGGAGA+GGG + chr3_4:54413390-54413409 None:intergenic 60.0%
TTCACCTACGTCTGGGGGAG+AGG + chr3_4:54413391-54413410 None:intergenic 60.0%
!! GGTGTCACCAATGGTGGGCT+AGG + chr3_4:54414027-54414046 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr3_4:54414847-54414866 Msa0507190:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3_4:54414963-54414982 Msa0507190:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr3_4:54414996-54415015 Msa0507190:intron 60.0%
GCAGGGAGCGACTACTGTGC+AGG + chr3_4:54412349-54412368 None:intergenic 65.0%
TTGCCCTCTCCCCCAGACGT+AGG - chr3_4:54413384-54413403 Msa0507190:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3_4:54414965-54414984 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_4:54414978-54414997 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_4:54414979-54414998 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_4:54414978-54414997 Msa0507190:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_4:54414979-54414998 Msa0507190:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_4:54414980-54414999 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_4:54414984-54415003 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_4:54414985-54415004 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 54411245 54417008 54411245 ID=Msa0507190;Name=Msa0507190
chr3_4 mRNA 54411245 54417008 54411245 ID=Msa0507190-mRNA-1;Parent=Msa0507190;Name=Msa0507190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.83|0.85|1|0.83|0.71|7|414|272
chr3_4 exon 54411245 54411609 54411245 ID=Msa0507190-mRNA-1:exon:12046;Parent=Msa0507190-mRNA-1
chr3_4 exon 54411735 54411870 54411735 ID=Msa0507190-mRNA-1:exon:12045;Parent=Msa0507190-mRNA-1
chr3_4 exon 54412587 54412727 54412587 ID=Msa0507190-mRNA-1:exon:12044;Parent=Msa0507190-mRNA-1
chr3_4 exon 54413449 54413566 54413449 ID=Msa0507190-mRNA-1:exon:12043;Parent=Msa0507190-mRNA-1
chr3_4 exon 54414189 54414332 54414189 ID=Msa0507190-mRNA-1:exon:12042;Parent=Msa0507190-mRNA-1
chr3_4 exon 54414434 54414524 54414434 ID=Msa0507190-mRNA-1:exon:12041;Parent=Msa0507190-mRNA-1
chr3_4 exon 54416771 54417008 54416771 ID=Msa0507190-mRNA-1:exon:12040;Parent=Msa0507190-mRNA-1
chr3_4 CDS 54416771 54417008 54416771 ID=Msa0507190-mRNA-1:cds;Parent=Msa0507190-mRNA-1
chr3_4 CDS 54414434 54414524 54414434 ID=Msa0507190-mRNA-1:cds;Parent=Msa0507190-mRNA-1
chr3_4 CDS 54414189 54414332 54414189 ID=Msa0507190-mRNA-1:cds;Parent=Msa0507190-mRNA-1
chr3_4 CDS 54413449 54413566 54413449 ID=Msa0507190-mRNA-1:cds;Parent=Msa0507190-mRNA-1
chr3_4 CDS 54412587 54412727 54412587 ID=Msa0507190-mRNA-1:cds;Parent=Msa0507190-mRNA-1
chr3_4 CDS 54411784 54411870 54411784 ID=Msa0507190-mRNA-1:cds;Parent=Msa0507190-mRNA-1
chr3_4 three_prime_UTR 54411735 54411783 54411735 ID=Msa0507190-mRNA-1:three_prime_utr;Parent=Msa0507190-mRNA-1
chr3_4 three_prime_UTR 54411245 54411609 54411245 ID=Msa0507190-mRNA-1:three_prime_utr;Parent=Msa0507190-mRNA-1
Gene Sequence

>Msa0507190

ATGTCCACCGTTAGAATTCAAGTTTCAGCATGCGCTCTTTCCGCCACCGTTAACCACCTTCGTTACCGTCCAAGCTACGCCGTTTCAACTAGCTCCTTCAACAACGGTTTCAGCATTAAACCCCTTAGAGTATCAATGTCTTCTGTTCCTCCTTCTGAGCCATTGGAAGTTGCTGTTAAAGCTTCTCTTACCACGCCTAACAAGATTGGAGACTGTAAAAATTCTTACCCTTTTCATGGCCCTTTTAGCCAAAGAGTGTTGCTGACACTGGAGGAAAAACATTTACCTTATGAGCCAAAATTGGTTGATTTAAGAAACAAACCAGAATGGTTCCTTGAAATCAGTCCTGAAGGCAAAGTTCCCGTAATAAATTTTGATGGAAAGTGGGTTGCAGATTCAGATTTAATCACACAAACATTGGAGGAGAAGTATCCTAGCCCACCATTGGTGACACCACCTGAAAAGGCTACAGCTGGATCAAAGATCTTCTCTACATTTATTGGATTTCTCAAAAGCAAAGATCCCAATGACGGAACAGAACAAGCATTACTAAATGAACTGAGCTCCTTCAACGATTACCTCAAGGAAAATGGTCCTTTTATCAATGGGAAAGACATCTCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGGCCGTACCTGACTCGCTGACCTTTTTGAAGTCTTACTTGAAGGAAATTTTCTCGAGGGAATCATTCATCAACACACGTGCACAGCCGGATGATGTCATTGAAGGTTGGCGTCCTAAAGTAGAGGGTTGA
Protein sequence

>Msa0507190

MSTVRIQVSACALSATVNHLRYRPSYAVSTSSFNNGFSIKPLRVSMSSVPPSEPLEVAVKASLTTPNKIGDCKNSYPFHGPFSQRVLLTLEEKHLPYEPKLVDLRNKPEWFLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFINGKDISAADLSLGPKLYHLEIALGHYKKWAVPDSLTFLKSYLKEIFSRESFINTRAQPDDVIEGWRPKVEG*