AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145440 MtrunA17_Chr1g0154171 87.812 361 27 2 1 345 1 360 0.0 650
Msa0145440 MtrunA17_Chr1g0154191 70.053 374 73 5 6 346 5 372 0.0 518
Msa0145440 MtrunA17_Chr1g0154161 69.167 360 49 3 4 346 11 325 7.14e-177 493
Msa0145440 MtrunA17_Chr1g0154211 59.194 397 102 6 1 339 1 395 2.77e-156 444
Msa0145440 MtrunA17_Chr1g0154131 63.830 329 92 7 7 332 168 472 3.93e-145 418
Msa0145440 MtrunA17_Chr1g0154131 73.292 161 36 2 6 160 9 168 5.37e-74 236
Msa0145440 MtrunA17_Chr1g0154151 64.780 318 82 7 38 338 19 323 3.92e-140 400
Msa0145440 MtrunA17_Chr1g0154111 56.831 366 117 6 6 337 9 367 7.19e-139 407
Msa0145440 MtrunA17_Chr1g0154111 58.852 209 68 3 38 228 368 576 1.44e-68 225
Msa0145440 MtrunA17_Chr1g0154101 48.552 449 114 5 7 341 168 613 8.26e-129 388
Msa0145440 MtrunA17_Chr1g0154101 74.534 161 35 1 6 160 8 168 7.23e-78 254
Msa0145440 MtrunA17_Chr1g0154101 37.092 337 198 5 20 342 503 839 1.10e-57 200
Msa0145440 MtrunA17_Chr1g0154071 50.852 352 140 6 11 334 145 491 3.18e-108 325
Msa0145440 MtrunA17_Chr1g0154071 74.242 132 33 1 3 134 8 138 3.68e-63 208
Msa0145440 MtrunA17_Chr1g0154241 61.004 259 55 5 6 224 5 257 1.75e-95 285
Msa0145440 MtrunA17_Chr1g0154251 42.822 404 145 10 6 327 10 409 1.14e-91 283
Msa0145440 MtrunA17_Chr1g0154041 38.244 353 184 8 20 346 252 596 1.67e-59 201
Msa0145440 MtrunA17_Chr1g0154041 32.951 349 200 8 22 339 15 360 2.03e-54 187
Msa0145440 MtrunA17_Chr7g0233561 26.101 318 202 8 21 327 16 311 2.13e-26 107
Msa0145440 MtrunA17_Chr3g0131891 26.462 325 182 10 21 327 17 302 4.30e-26 106
Msa0145440 MtrunA17_Chr7g0233531 27.551 294 175 7 39 327 2 262 3.38e-23 97.4
Msa0145440 MtrunA17_Chr1g0208771 26.498 317 199 12 27 332 1 294 5.47e-22 96.7
Msa0145440 MtrunA17_Chr7g0233541 26.498 317 184 11 39 338 2 286 8.00e-22 94.0
Msa0145440 MtrunA17_Chr7g0233521 26.333 300 171 10 39 327 2 262 2.11e-19 87.0
Msa0145440 MtrunA17_Chr1g0154121 41.000 100 48 2 258 346 2 101 1.06e-18 80.5
Msa0145440 MtrunA17_Chr3g0103171 25.000 292 184 10 39 327 6 265 4.57e-17 80.1
Msa0145440 MtrunA17_Chr8g0390841 24.308 325 217 12 16 332 32 335 1.04e-16 81.3
Msa0145440 MtrunA17_Chr7g0233571 25.943 212 148 3 16 224 3 208 7.21e-16 75.9
Msa0145440 MtrunA17_Chr5g0419201 29.921 127 84 1 23 144 16 142 1.72e-11 62.8
Msa0145440 MtrunA17_Chr1g0162441 40.506 79 47 0 35 113 19 97 1.83e-11 65.1
Msa0145440 MtrunA17_Chr1g0163221 23.248 314 177 13 21 316 9 276 3.65e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145440 AT4G33280.1 34.568 324 185 7 9 326 11 313 3.38e-55 184
Msa0145440 AT4G33280.3 30.978 368 200 9 9 326 11 374 2.24e-49 170
Msa0145440 AT4G33280.2 49.390 164 71 4 9 171 11 163 4.34e-46 159
Msa0145440 AT3G18990.1 23.653 334 222 7 23 327 6 335 3.57e-22 96.3
Msa0145440 AT3G18990.2 23.653 334 222 7 23 327 6 335 3.72e-22 96.7
Msa0145440 AT4G34400.2 39.535 86 52 0 37 122 29 114 4.30e-18 85.1
Msa0145440 AT4G34400.1 39.535 86 52 0 37 122 29 114 4.30e-18 85.1
Msa0145440 AT3G06160.5 26.667 195 128 3 23 205 11 202 4.35e-17 81.3
Msa0145440 AT3G06160.4 26.667 195 128 3 23 205 11 202 4.35e-17 81.3
Msa0145440 AT3G06160.3 26.667 195 128 3 23 205 11 202 4.35e-17 81.3
Msa0145440 AT3G06160.1 26.667 195 128 3 23 205 26 217 5.43e-17 81.3
Msa0145440 AT3G06160.2 26.667 195 128 3 23 205 70 261 1.13e-16 80.9
Msa0145440 AT3G06220.1 29.839 124 78 4 23 146 11 125 1.72e-14 71.2
Msa0145440 AT5G66980.1 24.573 293 197 10 35 317 21 299 1.73e-14 73.9
Msa0145440 AT5G09780.1 26.335 281 175 12 43 318 44 297 1.50e-12 67.8
Msa0145440 AT5G60130.5 40.449 89 48 2 37 120 27 115 2.48e-12 66.6
Msa0145440 AT5G60130.3 40.449 89 48 2 37 120 1 89 3.35e-12 66.6
Msa0145440 AT5G60130.2 40.449 89 48 2 37 120 27 115 3.92e-12 66.6
Msa0145440 AT5G60130.4 40.449 89 48 2 37 120 24 112 5.23e-12 66.2
Msa0145440 AT5G18000.2 22.909 275 185 7 55 326 19 269 5.30e-12 65.9
Msa0145440 AT5G60130.1 40.449 89 48 2 37 120 27 115 5.48e-12 66.2
Msa0145440 AT5G18000.1 22.909 275 185 7 55 326 54 304 7.94e-12 65.9
Msa0145440 AT3G53310.1 35.165 91 57 1 23 113 12 100 1.03e-11 65.1
Msa0145440 AT2G16210.1 25.086 291 169 11 34 317 31 279 1.80e-11 64.7
Msa0145440 AT3G17010.1 21.967 305 187 10 38 335 37 297 5.47e-11 63.2

Find 71 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGCAGGTTCATATATT+TGG 0.071470 1_4:+5132023 Msa0145440:CDS
CAACTCCACTAGGACCTTTA+AGG 0.178570 1_4:-5130338 None:intergenic
CTTCTTCTTGGTCCTCTTGC+TGG 0.214523 1_4:-5130706 None:intergenic
CGTGATAATGGCATCAATTT+TGG 0.226290 1_4:+5131966 Msa0145440:CDS
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1_4:+5130324 Msa0145440:CDS
TGATGCAGGTTCATATATTT+GGG 0.266594 1_4:+5132024 Msa0145440:CDS
ATAACCTTTGTTCGTGATAA+TGG 0.267989 1_4:+5131954 Msa0145440:CDS
TTTGAGGTCTTAATCTTTGA+TGG 0.272020 1_4:+5130489 Msa0145440:CDS
TACAAGTTGTTGTTGAAAAT+TGG 0.275640 1_4:-5129557 None:intergenic
TTCTTTAACAGGCTTCTTCT+TGG 0.292612 1_4:-5130718 None:intergenic
CACAAGTCTCACAAGTTATC+AGG 0.302645 1_4:-5132089 None:intergenic
AGTGGAGTTGTGTGGGATAT+TGG 0.305311 1_4:+5130351 Msa0145440:CDS
CTTGGGAAGAAGATATTTAC+TGG 0.326346 1_4:+5129488 Msa0145440:CDS
TGCTTCCCCTGAGCAGTTCA+TGG 0.329585 1_4:+5130635 Msa0145440:CDS
GAAAGTATTGACAATCAAAA+TGG 0.330748 1_4:+5132056 Msa0145440:CDS
ACAGGTGTAACTTCTTTAAC+AGG 0.338513 1_4:-5130729 None:intergenic
GTCTTCCCCTCTTCTTAGTC+TGG 0.373579 1_4:-5130752 None:intergenic
GTGGAGTTGTGTGGGATATT+GGG 0.385625 1_4:+5130352 Msa0145440:CDS
CCCCTCTTCTTAGTCTGGAC+AGG 0.389132 1_4:-5130747 None:intergenic
ATGTAATTCATTACTGCTAC+TGG 0.394535 1_4:-5132286 None:intergenic
AGCATTCCTCGTTTAGCATA+TGG 0.394544 1_4:-5131909 None:intergenic
GAAAAGAGGAAGTAAATGAT+TGG 0.401129 1_4:-5131632 None:intergenic
GCATTCCTCGTTTAGCATAT+GGG 0.423038 1_4:-5131908 None:intergenic
GCATCAGCCATGAACTGCTC+AGG 0.438299 1_4:-5130642 None:intergenic
AAGTAGATGGAAGCAGATCT+TGG 0.447214 1_4:+5129470 Msa0145440:CDS
TTTAACAAAATATGGAAAAG+AGG 0.455186 1_4:-5131646 None:intergenic
TGTTTCTGATTATGTGATGC+AGG 0.475973 1_4:+5132010 Msa0145440:CDS
AACTCCACTAGGACCTTTAA+GGG 0.479312 1_4:-5130337 None:intergenic
TGAGAGATCACATGATTTGG+TGG 0.481299 1_4:+5130797 Msa0145440:CDS
AGCATATGGGACTGAGTTCA+CGG 0.484588 1_4:-5131895 None:intergenic
CAGGTTCATATATTTGGGGC+TGG 0.486068 1_4:+5132029 Msa0145440:CDS
TTCCTTGTCTTTAAGTACAA+TGG 0.496096 1_4:+5130456 Msa0145440:CDS
AAAAGAGGAAGTAAATGATT+GGG 0.501391 1_4:-5131631 None:intergenic
CAATGGTGAATCACTCTTTG+AGG 0.502205 1_4:+5130473 Msa0145440:CDS
GTTTGTAACAAGGAACTCTC+AGG 0.504568 1_4:+5130819 Msa0145440:CDS
TCATATATTTGGGGCTGGAA+AGG 0.506411 1_4:+5132034 Msa0145440:CDS
AGATGATACTGTTTACTTCA+CGG 0.508557 1_4:+5130386 Msa0145440:CDS
AGTAGATGGAAGCAGATCTT+GGG 0.514632 1_4:+5129471 Msa0145440:CDS
GAAATTCAAGAGGCGAATGT+TGG 0.522916 1_4:+5131871 Msa0145440:CDS
TGATTTGGTGGTTTGTAACA+AGG 0.529689 1_4:+5130809 Msa0145440:CDS
CATCAGCCATGAACTGCTCA+GGG 0.531256 1_4:-5130641 None:intergenic
AAAAGAAGCAGAGAGTGAAA+TGG 0.535789 1_4:-5129439 None:intergenic
CTGTTTACTTCACGGACGGT+TGG 0.547363 1_4:+5130394 Msa0145440:CDS
ATATCCCACACAACTCCACT+AGG 0.550354 1_4:-5130348 None:intergenic
CACCATTGTACTTAAAGACA+AGG 0.554483 1_4:-5130458 None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG 0.558725 1_4:+5130343 Msa0145440:CDS
AACTGAACAAGGGGATAGCA+AGG 0.567712 1_4:+5130569 Msa0145440:CDS
TGTTGGTGGTTCGCGTACAC+TGG 0.571952 1_4:+5131686 Msa0145440:CDS
ACCTGTCCAGACTAAGAAGA+GGG 0.576873 1_4:+5130746 Msa0145440:CDS
GGACATGCTCAAACTGAACA+AGG 0.584733 1_4:+5130558 Msa0145440:CDS
AGGTCCTAGTGGAGTTGTGT+GGG 0.591978 1_4:+5130344 Msa0145440:CDS
GATGCCATTATCACGAACAA+AGG 0.595838 1_4:-5131958 None:intergenic
GTTACGCTTCGAAATTCAAG+AGG 0.604672 1_4:+5131861 Msa0145440:CDS
AAGTTGTTGTTGAAAATTGG+TGG 0.610802 1_4:-5129554 None:intergenic
CACTAAGACCACACCTGTAG+CGG 0.612134 1_4:+5130668 Msa0145440:CDS
GGAGGGAACCGCTACAGGTG+TGG 0.623638 1_4:-5130676 None:intergenic
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1_4:+5130333 Msa0145440:CDS
ACAAGGGGATAGCAAGGCAA+AGG 0.631522 1_4:+5130575 Msa0145440:CDS
GATACTGTTTACTTCACGGA+CGG 0.631641 1_4:+5130390 Msa0145440:CDS
CACCTGTCCAGACTAAGAAG+AGG 0.632249 1_4:+5130745 Msa0145440:CDS
ACATGCTCAAACTGAACAAG+GGG 0.633900 1_4:+5130560 Msa0145440:CDS
GACATGCTCAAACTGAACAA+GGG 0.641869 1_4:+5130559 Msa0145440:CDS
GTGCAGCAGTGAAACGACGC+GGG 0.645296 1_4:-5131815 None:intergenic
TCAGTAGCAAACACTAGCAG+TGG 0.651568 1_4:+5132258 Msa0145440:three_prime_UTR
GTGTTGTATCTTACAACTAG+CGG 0.654004 1_4:+5132136 Msa0145440:three_prime_UTR
AGACTTGTGCATCTTATGCA+TGG 0.655225 1_4:+5132103 Msa0145440:exon
GATGCAGGTTCATATATTTG+GGG 0.679497 1_4:+5132025 Msa0145440:CDS
ATCAGCCATGAACTGCTCAG+GGG 0.726483 1_4:-5130640 None:intergenic
CCTGTCCAGACTAAGAAGAG+GGG 0.734295 1_4:+5130747 Msa0145440:CDS
TCAGTCCCATATGCTAAACG+AGG 0.734975 1_4:+5131903 Msa0145440:CDS
TGTGCAGCAGTGAAACGACG+CGG 0.757873 1_4:-5131816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAACCTTTATA+AGG + chr1_4:5129625-5129644 Msa0145440:intron 10.0%
!! GTATAAAATATAAAAAATCA+TGG - chr1_4:5129808-5129827 None:intergenic 10.0%
!!! TTAAGTATTTTAACAAAATA+TGG - chr1_4:5131657-5131676 None:intergenic 10.0%
!! TTTGTTAAAATACTTAAAAA+CGG + chr1_4:5131660-5131679 Msa0145440:CDS 10.0%
!!! TATTTCTATTTTGTATTAAA+TGG + chr1_4:5132317-5132336 Msa0145440:three_prime_UTR 10.0%
!!! TTAATTTTTATTAACATGGA+AGG - chr1_4:5129616-5129635 None:intergenic 15.0%
!!! AGGTTTAATTTTTATTAACA+TGG - chr1_4:5129620-5129639 None:intergenic 15.0%
!! AGATACAAAATTTAAAAGAT+GGG - chr1_4:5129693-5129712 None:intergenic 15.0%
!! AAGATACAAAATTTAAAAGA+TGG - chr1_4:5129694-5129713 None:intergenic 15.0%
!!! TAATTAAGTTGATTGTTTAA+AGG + chr1_4:5129918-5129937 Msa0145440:intron 15.0%
!! ATTACAAACTTTGTAATTTA+AGG + chr1_4:5130075-5130094 Msa0145440:intron 15.0%
!! AGATTAATAGGAAAAATTAA+GGG - chr1_4:5130958-5130977 None:intergenic 15.0%
!! ATGAAATAAAAAAAAAACAG+TGG - chr1_4:5132208-5132227 None:intergenic 15.0%
!! AAAAAGAGAAAAAGAATGAA+GGG - chr1_4:5129589-5129608 None:intergenic 20.0%
!! TAAAAAGAGAAAAAGAATGA+AGG - chr1_4:5129590-5129609 None:intergenic 20.0%
!!! TTTATAAGGTTTTCATACTT+GGG + chr1_4:5129639-5129658 Msa0145440:intron 20.0%
!! TTGTTTAAAGGAATTGAATA+AGG + chr1_4:5129930-5129949 Msa0145440:intron 20.0%
!!! GAAATTTATATTTTAACTGC+AGG + chr1_4:5130260-5130279 Msa0145440:intron 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG - chr1_4:5130291-5130310 None:intergenic 20.0%
!! GAGATTAATAGGAAAAATTA+AGG - chr1_4:5130959-5130978 None:intergenic 20.0%
!!! TTTTCATACATGTTATTGAA+AGG - chr1_4:5131482-5131501 None:intergenic 20.0%
!! TTTAACAAAATATGGAAAAG+AGG - chr1_4:5131649-5131668 None:intergenic 20.0%
!! ACGTAACTTAAAGATAAAAA+GGG - chr1_4:5131721-5131740 None:intergenic 20.0%
!!! TTTTAAGAAATTGGGTGAAA+TGG - chr1_4:5129531-5129550 None:intergenic 25.0%
!! TACAAGTTGTTGTTGAAAAT+TGG - chr1_4:5129560-5129579 None:intergenic 25.0%
! CAAGTATGAAAACCTTATAA+AGG - chr1_4:5129640-5129659 None:intergenic 25.0%
!! CTTTATAAGGTTTTCATACT+TGG + chr1_4:5129638-5129657 Msa0145440:intron 25.0%
!!! AGTTTTGAGCTTTTGATTTT+TGG + chr1_4:5129753-5129772 Msa0145440:intron 25.0%
! AAACTAACGTACTAATTAGT+TGG - chr1_4:5130011-5130030 None:intergenic 25.0%
!! CTTTGTAATTTAAGGTTACA+AGG + chr1_4:5130083-5130102 Msa0145440:intron 25.0%
!! ATGTATCTTTTAATCTCAGA+TGG + chr1_4:5130238-5130257 Msa0145440:intron 25.0%
!!! TCAAAAGAATTAGCTGTTTT+TGG - chr1_4:5130780-5130799 None:intergenic 25.0%
! AATAGGAAAAATTAAGGGAA+AGG - chr1_4:5130953-5130972 None:intergenic 25.0%
! TGTTTATGTTGAAGATGTTA+TGG - chr1_4:5131441-5131460 None:intergenic 25.0%
! CAATCATGAGTTTGAATAAA+AGG - chr1_4:5131545-5131564 None:intergenic 25.0%
! AAAAGAGGAAGTAAATGATT+GGG - chr1_4:5131634-5131653 None:intergenic 25.0%
! CACGTAACTTAAAGATAAAA+AGG - chr1_4:5131722-5131741 None:intergenic 25.0%
!!! GAAAGTATTGACAATCAAAA+TGG + chr1_4:5132056-5132075 Msa0145440:CDS 25.0%
!! GAATGTACTAATTTTCTACT+AGG + chr1_4:5132182-5132201 Msa0145440:three_prime_UTR 25.0%
!!! CTTTTTCAAATGGAAGTAGA+TGG + chr1_4:5129457-5129476 Msa0145440:exon 30.0%
!!! GGTGGTAGTTTTAAGAAATT+GGG - chr1_4:5129539-5129558 None:intergenic 30.0%
!!! TGGTGGTAGTTTTAAGAAAT+TGG - chr1_4:5129540-5129559 None:intergenic 30.0%
! AAGTTGTTGTTGAAAATTGG+TGG - chr1_4:5129557-5129576 None:intergenic 30.0%
TAAGGCGATTGATTAGTAAA+AGG + chr1_4:5129948-5129967 Msa0145440:intron 30.0%
! TATGATTTTTCTCCTTTGCT+AGG - chr1_4:5129988-5130007 None:intergenic 30.0%
AAATAGTTATGAGAAGCTCT+TGG + chr1_4:5130172-5130191 Msa0145440:intron 30.0%
AATAGTTATGAGAAGCTCTT+GGG + chr1_4:5130173-5130192 Msa0145440:intron 30.0%
AGATGATACTGTTTACTTCA+CGG + chr1_4:5130386-5130405 Msa0145440:CDS 30.0%
TTCCTTGTCTTTAAGTACAA+TGG + chr1_4:5130456-5130475 Msa0145440:CDS 30.0%
! TTTGAGGTCTTAATCTTTGA+TGG + chr1_4:5130489-5130508 Msa0145440:CDS 30.0%
!!! AAGGCAACTTCTTATTTTGT+GGG + chr1_4:5130528-5130547 Msa0145440:CDS 30.0%
!!! TCTTATTTTGTGGGAAAATG+TGG + chr1_4:5130537-5130556 Msa0145440:CDS 30.0%
!! TTTTGAGAGATCACATGATT+TGG + chr1_4:5130794-5130813 Msa0145440:CDS 30.0%
! TTCACTCTAGAGAGATTAAT+AGG - chr1_4:5130970-5130989 None:intergenic 30.0%
TAGAGTGAAGTAATTGTTAG+CGG + chr1_4:5130981-5131000 Msa0145440:intron 30.0%
! GGGATTTAGAGTTTATAAAG+AGG + chr1_4:5131016-5131035 Msa0145440:intron 30.0%
ATACCATGTAACAAATATCG+AGG - chr1_4:5131087-5131106 None:intergenic 30.0%
TCATACATGTTATTGAAAGG+AGG - chr1_4:5131479-5131498 None:intergenic 30.0%
GAAAAGAGGAAGTAAATGAT+TGG - chr1_4:5131635-5131654 None:intergenic 30.0%
ATACTTAAAAACGGCAATGT+TGG + chr1_4:5131669-5131688 Msa0145440:CDS 30.0%
ATAACCTTTGTTCGTGATAA+TGG + chr1_4:5131954-5131973 Msa0145440:CDS 30.0%
TGATGCAGGTTCATATATTT+GGG + chr1_4:5132024-5132043 Msa0145440:CDS 30.0%
ATGTAATTCATTACTGCTAC+TGG - chr1_4:5132289-5132308 None:intergenic 30.0%
AAAAGAAGCAGAGAGTGAAA+TGG - chr1_4:5129442-5129461 None:intergenic 35.0%
!!! CTCTCTGCTTCTTTTTCAAA+TGG + chr1_4:5129447-5129466 Msa0145440:exon 35.0%
CTTGGGAAGAAGATATTTAC+TGG + chr1_4:5129488-5129507 Msa0145440:CDS 35.0%
TACACATAGATATGCTAGAG+TGG + chr1_4:5129825-5129844 Msa0145440:intron 35.0%
AATCATCTCAAGTACACTTG+AGG - chr1_4:5130134-5130153 None:intergenic 35.0%
CACCATTGTACTTAAAGACA+AGG - chr1_4:5130461-5130480 None:intergenic 35.0%
! TGGAGATAACTTTTGTGAGA+AGG + chr1_4:5130509-5130528 Msa0145440:CDS 35.0%
!!! GAAGGCAACTTCTTATTTTG+TGG + chr1_4:5130527-5130546 Msa0145440:CDS 35.0%
!! AACACTTCTGCTTTTAATGC+TGG + chr1_4:5130603-5130622 Msa0145440:CDS 35.0%
TTCTTTAACAGGCTTCTTCT+TGG - chr1_4:5130721-5130740 None:intergenic 35.0%
ACAGGTGTAACTTCTTTAAC+AGG - chr1_4:5130732-5130751 None:intergenic 35.0%
!! TGATTTGGTGGTTTGTAACA+AGG + chr1_4:5130809-5130828 Msa0145440:CDS 35.0%
TTTACTCATCCCTACAAAAC+CGG - chr1_4:5131063-5131082 None:intergenic 35.0%
! AAGCCTCGATATTTGTTACA+TGG + chr1_4:5131081-5131100 Msa0145440:intron 35.0%
GATTACTGTAACGAATATCG+AGG - chr1_4:5131396-5131415 None:intergenic 35.0%
!! AGACAAGTATCAGTTTGCTA+GGG - chr1_4:5131518-5131537 None:intergenic 35.0%
! AAGACAAGTATCAGTTTGCT+AGG - chr1_4:5131519-5131538 None:intergenic 35.0%
CATCCATCATGAAGAGAAAA+AGG + chr1_4:5131586-5131605 Msa0145440:intron 35.0%
! CTTCCTTTTTCTCTTCATGA+TGG - chr1_4:5131592-5131611 None:intergenic 35.0%
CATCATGAAGAGAAAAAGGA+AGG + chr1_4:5131590-5131609 Msa0145440:intron 35.0%
!!! CGTGATAATGGCATCAATTT+TGG + chr1_4:5131966-5131985 Msa0145440:CDS 35.0%
! TGTTTCTGATTATGTGATGC+AGG + chr1_4:5132010-5132029 Msa0145440:CDS 35.0%
GTGATGCAGGTTCATATATT+TGG + chr1_4:5132023-5132042 Msa0145440:CDS 35.0%
GATGCAGGTTCATATATTTG+GGG + chr1_4:5132025-5132044 Msa0145440:CDS 35.0%
GTGTTGTATCTTACAACTAG+CGG + chr1_4:5132136-5132155 Msa0145440:three_prime_UTR 35.0%
AAGTAGATGGAAGCAGATCT+TGG + chr1_4:5129470-5129489 Msa0145440:CDS 40.0%
AGTAGATGGAAGCAGATCTT+GGG + chr1_4:5129471-5129490 Msa0145440:CDS 40.0%
AGCTGTAGATCTGTATGCTT+TGG + chr1_4:5129866-5129885 Msa0145440:intron 40.0%
CTTTGCTAGGATTTGAACTC+GGG - chr1_4:5129975-5129994 None:intergenic 40.0%
CCTTTGCTAGGATTTGAACT+CGG - chr1_4:5129976-5129995 None:intergenic 40.0%
CAGAAGAGTCTAAGAGATGT+TGG - chr1_4:5130214-5130233 None:intergenic 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG - chr1_4:5130327-5130346 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG + chr1_4:5130324-5130343 Msa0145440:CDS 40.0%
AACTCCACTAGGACCTTTAA+GGG - chr1_4:5130340-5130359 None:intergenic 40.0%
GATACTGTTTACTTCACGGA+CGG + chr1_4:5130390-5130409 Msa0145440:CDS 40.0%
CAATGGTGAATCACTCTTTG+AGG + chr1_4:5130473-5130492 Msa0145440:CDS 40.0%
GACATGCTCAAACTGAACAA+GGG + chr1_4:5130559-5130578 Msa0145440:CDS 40.0%
ACATGCTCAAACTGAACAAG+GGG + chr1_4:5130560-5130579 Msa0145440:CDS 40.0%
! TGAGAGATCACATGATTTGG+TGG + chr1_4:5130797-5130816 Msa0145440:CDS 40.0%
GTTTGTAACAAGGAACTCTC+AGG + chr1_4:5130819-5130838 Msa0145440:CDS 40.0%
!! AAATACAAGAGAGCGTTTGC+TGG - chr1_4:5130927-5130946 None:intergenic 40.0%
! GCAAACGCTCTCTTGTATTT+TGG + chr1_4:5130927-5130946 Msa0145440:intron 40.0%
TACATGGTATCAGAGCCTAT+CGG + chr1_4:5131097-5131116 Msa0145440:intron 40.0%
CCTATCTATATACCGAGTGT+TGG - chr1_4:5131264-5131283 None:intergenic 40.0%
CCAACACTCGGTATATAGAT+AGG + chr1_4:5131237-5131256 Msa0145440:intron 40.0%
CCAACACTCGGTATATAGAT+AGG - chr1_4:5131237-5131256 None:intergenic 40.0%
CCTATCTATATACCGAGTGT+TGG + chr1_4:5131264-5131283 Msa0145440:intron 40.0%
CTTAAAAACGGCAATGTTGG+TGG + chr1_4:5131672-5131691 Msa0145440:CDS 40.0%
TGCTTGACAAACTGATCGTT+TGG + chr1_4:5131756-5131775 Msa0145440:intron 40.0%
! TAACTTCTGTTTTGTCGTCG+GGG - chr1_4:5131845-5131864 None:intergenic 40.0%
! GTAACTTCTGTTTTGTCGTC+GGG - chr1_4:5131846-5131865 None:intergenic 40.0%
! CGTAACTTCTGTTTTGTCGT+CGG - chr1_4:5131847-5131866 None:intergenic 40.0%
GTTACGCTTCGAAATTCAAG+AGG + chr1_4:5131861-5131880 Msa0145440:CDS 40.0%
GAAATTCAAGAGGCGAATGT+TGG + chr1_4:5131871-5131890 Msa0145440:CDS 40.0%
GCATTCCTCGTTTAGCATAT+GGG - chr1_4:5131911-5131930 None:intergenic 40.0%
AGCATTCCTCGTTTAGCATA+TGG - chr1_4:5131912-5131931 None:intergenic 40.0%
! GAATGCTTCACACCTTTTGT+GGG + chr1_4:5131925-5131944 Msa0145440:CDS 40.0%
! AATGCTTCACACCTTTTGTG+GGG + chr1_4:5131926-5131945 Msa0145440:CDS 40.0%
GATGCCATTATCACGAACAA+AGG - chr1_4:5131961-5131980 None:intergenic 40.0%
! TCATATATTTGGGGCTGGAA+AGG + chr1_4:5132034-5132053 Msa0145440:CDS 40.0%
CACAAGTCTCACAAGTTATC+AGG - chr1_4:5132092-5132111 None:intergenic 40.0%
AGACTTGTGCATCTTATGCA+TGG + chr1_4:5132103-5132122 Msa0145440:exon 40.0%
CCGAGTTCAAATCCTAGCAA+AGG + chr1_4:5129973-5129992 Msa0145440:intron 45.0%
! CACTTGAGGTGTTATCTCAG+TGG - chr1_4:5130120-5130139 None:intergenic 45.0%
CAACTCCACTAGGACCTTTA+AGG - chr1_4:5130341-5130360 None:intergenic 45.0%
ATATCCCACACAACTCCACT+AGG - chr1_4:5130351-5130370 None:intergenic 45.0%
AGTGGAGTTGTGTGGGATAT+TGG + chr1_4:5130351-5130370 Msa0145440:CDS 45.0%
GTGGAGTTGTGTGGGATATT+GGG + chr1_4:5130352-5130371 Msa0145440:CDS 45.0%
GGACATGCTCAAACTGAACA+AGG + chr1_4:5130558-5130577 Msa0145440:CDS 45.0%
AACTGAACAAGGGGATAGCA+AGG + chr1_4:5130569-5130588 Msa0145440:CDS 45.0%
!!! CTCTTGCTGGTTTTTTGGGA+GGG - chr1_4:5130696-5130715 None:intergenic 45.0%
!!! GGTCCTCTTGCTGGTTTTTT+GGG - chr1_4:5130700-5130719 None:intergenic 45.0%
!!! TGGTCCTCTTGCTGGTTTTT+TGG - chr1_4:5130701-5130720 None:intergenic 45.0%
ACCTGTCCAGACTAAGAAGA+GGG + chr1_4:5130746-5130765 Msa0145440:CDS 45.0%
TGGCAAGTTAGCTAGAGAGA+GGG - chr1_4:5130907-5130926 None:intergenic 45.0%
AATTGTTAGCGGCCAACACT+CGG + chr1_4:5130992-5131011 Msa0145440:intron 45.0%
ACATGGTATCAGAGCCTATC+GGG + chr1_4:5131098-5131117 Msa0145440:intron 45.0%
!! TGTGAGGAGTGTTTCTCGTT+GGG - chr1_4:5131318-5131337 None:intergenic 45.0%
!! ACAGTACAAGCCGGTTTTGT+AGG + chr1_4:5131335-5131354 Msa0145440:intron 45.0%
!! CAGTACAAGCCGGTTTTGTA+GGG + chr1_4:5131336-5131355 Msa0145440:intron 45.0%
AGTGCCTCGATATTCGTTGT+AGG + chr1_4:5131362-5131381 Msa0145440:intron 45.0%
GTGCCTCGATATTCGTTGTA+GGG + chr1_4:5131363-5131382 Msa0145440:intron 45.0%
CATCCCTACAACGAATATCG+AGG - chr1_4:5131369-5131388 None:intergenic 45.0%
AGCATATGGGACTGAGTTCA+CGG - chr1_4:5131898-5131917 None:intergenic 45.0%
TCAGTCCCATATGCTAAACG+AGG + chr1_4:5131903-5131922 Msa0145440:CDS 45.0%
! GGAATGCTTCACACCTTTTG+TGG + chr1_4:5131924-5131943 Msa0145440:CDS 45.0%
! ATGCTTCACACCTTTTGTGG+GGG + chr1_4:5131927-5131946 Msa0145440:CDS 45.0%
! CAGGTTCATATATTTGGGGC+TGG + chr1_4:5132029-5132048 Msa0145440:CDS 45.0%
TCAGTAGCAAACACTAGCAG+TGG + chr1_4:5132258-5132277 Msa0145440:three_prime_UTR 45.0%
GTGACCCTTAAAGGTCCTAG+TGG + chr1_4:5130333-5130352 Msa0145440:CDS 50.0%
AAGGTCCTAGTGGAGTTGTG+TGG + chr1_4:5130343-5130362 Msa0145440:CDS 50.0%
AGGTCCTAGTGGAGTTGTGT+GGG + chr1_4:5130344-5130363 Msa0145440:CDS 50.0%
CTGTTTACTTCACGGACGGT+TGG + chr1_4:5130394-5130413 Msa0145440:CDS 50.0%
ACAAGGGGATAGCAAGGCAA+AGG + chr1_4:5130575-5130594 Msa0145440:CDS 50.0%
ATCAGCCATGAACTGCTCAG+GGG - chr1_4:5130643-5130662 None:intergenic 50.0%
CATCAGCCATGAACTGCTCA+GGG - chr1_4:5130644-5130663 None:intergenic 50.0%
CACTAAGACCACACCTGTAG+CGG + chr1_4:5130668-5130687 Msa0145440:CDS 50.0%
!!! CCTCTTGCTGGTTTTTTGGG+AGG - chr1_4:5130697-5130716 None:intergenic 50.0%
CCTCCCAAAAAACCAGCAAG+AGG + chr1_4:5130694-5130713 Msa0145440:CDS 50.0%
CTTCTTCTTGGTCCTCTTGC+TGG - chr1_4:5130709-5130728 None:intergenic 50.0%
CACCTGTCCAGACTAAGAAG+AGG + chr1_4:5130745-5130764 Msa0145440:CDS 50.0%
CCTGTCCAGACTAAGAAGAG+GGG + chr1_4:5130747-5130766 Msa0145440:CDS 50.0%
GTCTTCCCCTCTTCTTAGTC+TGG - chr1_4:5130755-5130774 None:intergenic 50.0%
CTGGCAAGTTAGCTAGAGAG+AGG - chr1_4:5130908-5130927 None:intergenic 50.0%
CTCTAAATCCCACCGAGTGT+TGG - chr1_4:5131007-5131026 None:intergenic 50.0%
!! ACCGTACAAGCCGGTTTTGT+AGG + chr1_4:5131050-5131069 Msa0145440:intron 50.0%
!! CCCTACAAAACCGGCTTGTA+CGG - chr1_4:5131054-5131073 None:intergenic 50.0%
!! CCGTACAAGCCGGTTTTGTA+GGG + chr1_4:5131051-5131070 Msa0145440:intron 50.0%
! TGTGTTGTTGGGCCAACACT+CGG + chr1_4:5131150-5131169 Msa0145440:intron 50.0%
GACTAAATCCCACCGAGTGT+TGG - chr1_4:5131165-5131184 None:intergenic 50.0%
TGGGATTTAGTCCACGCTTC+AGG + chr1_4:5131173-5131192 Msa0145440:intron 50.0%
!! CTGTGAGGAGTGTTTCTCGT+TGG - chr1_4:5131319-5131338 None:intergenic 50.0%
ACACTCCTCACAGTACAAGC+CGG + chr1_4:5131326-5131345 Msa0145440:intron 50.0%
!! CAAAACCGGCTTGTACTGTG+AGG - chr1_4:5131334-5131353 None:intergenic 50.0%
GGCACTCATCCCTACAAAAC+CGG - chr1_4:5131348-5131367 None:intergenic 50.0%
! TTCACACCTTTTGTGGGGGA+TGG + chr1_4:5131931-5131950 Msa0145440:CDS 50.0%
GGTTATCCATCCCCCACAAA+AGG - chr1_4:5131940-5131959 None:intergenic 50.0%
TGCTTCCCCTGAGCAGTTCA+TGG + chr1_4:5130635-5130654 Msa0145440:CDS 55.0%
GCATCAGCCATGAACTGCTC+AGG - chr1_4:5130645-5130664 None:intergenic 55.0%
!! TTTTGGGAGGGAACCGCTAC+AGG - chr1_4:5130684-5130703 None:intergenic 55.0%
CCCCTCTTCTTAGTCTGGAC+AGG - chr1_4:5130750-5130769 None:intergenic 55.0%
ACACTCCTCACCGTACAAGC+CGG + chr1_4:5131041-5131060 Msa0145440:intron 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG - chr1_4:5131049-5131068 None:intergenic 55.0%
AGCCTATCGGGTCCATCGTT+GGG + chr1_4:5131110-5131129 Msa0145440:intron 55.0%
AACACACCCACTCACGCTTC+AGG - chr1_4:5131136-5131155 None:intergenic 55.0%
AGCGTGAGTGGGTGTGTTGT+TGG + chr1_4:5131138-5131157 Msa0145440:intron 55.0%
! GCGTGAGTGGGTGTGTTGTT+GGG + chr1_4:5131139-5131158 Msa0145440:intron 55.0%
TTGTTGGGCCAACACTCGGT+GGG + chr1_4:5131154-5131173 Msa0145440:intron 55.0%
GTGTGTTAGCGGCCAACACT+CGG + chr1_4:5131225-5131244 Msa0145440:intron 55.0%
GTGTGTTAGCGGCCAACACT+CGG - chr1_4:5131225-5131244 None:intergenic 55.0%
!! TGTTGGTGGTTCGCGTACAC+TGG + chr1_4:5131686-5131705 Msa0145440:CDS 55.0%
TGTGCAGCAGTGAAACGACG+CGG - chr1_4:5131819-5131838 None:intergenic 55.0%
TGTTAGCGGCCAACACTCGG+TGG + chr1_4:5130995-5131014 Msa0145440:intron 60.0%
GTTAGCGGCCAACACTCGGT+GGG + chr1_4:5130996-5131015 Msa0145440:intron 60.0%
GAGCCTATCGGGTCCATCGT+TGG + chr1_4:5131109-5131128 Msa0145440:intron 60.0%
TCACGCTTCAGGCCCAACGA+TGG - chr1_4:5131303-5131322 None:intergenic 60.0%
GTTGGGCCTGAAGCGTGAGT+GGG + chr1_4:5131127-5131146 Msa0145440:intron 60.0%
GTTGTTGGGCCAACACTCGG+TGG + chr1_4:5131153-5131172 Msa0145440:intron 60.0%
AGTCCACGCTTCAGGCCCAT+TGG + chr1_4:5131181-5131200 Msa0145440:intron 60.0%
GTCCACGCTTCAGGCCCATT+GGG + chr1_4:5131182-5131201 Msa0145440:intron 60.0%
ACGCTTCAGGCCCATTGGGT+CGG + chr1_4:5131186-5131205 Msa0145440:intron 60.0%
ACGCTTCAGCCCGACCCAAT+GGG - chr1_4:5131199-5131218 None:intergenic 60.0%
! AGCGTGAGGGGGTGTGTTAG+CGG + chr1_4:5131214-5131233 Msa0145440:intron 60.0%
! AGCGTGAGGGGGTGTGTTAG+CGG - chr1_4:5131214-5131233 None:intergenic 60.0%
AACACACCCCCTCACGCTTC+AGG + chr1_4:5131292-5131311 Msa0145440:intron 60.0%
TCGTTGGGCCTGAAGCGTGA+GGG - chr1_4:5131125-5131144 None:intergenic 60.0%
GGTTCGCGTACACTGGTGAG+TGG + chr1_4:5131693-5131712 Msa0145440:intron 60.0%
GTGCAGCAGTGAAACGACGC+GGG - chr1_4:5131818-5131837 None:intergenic 60.0%
GGAGGGAACCGCTACAGGTG+TGG - chr1_4:5130679-5130698 None:intergenic 65.0%
GGCCCAACGATGGACCCGAT+AGG - chr1_4:5131115-5131134 None:intergenic 65.0%
CGTTGGGCCTGAAGCGTGAG+TGG + chr1_4:5131126-5131145 Msa0145440:intron 65.0%
GACCCAATGGGCCTGAAGCG+TGG - chr1_4:5131187-5131206 None:intergenic 65.0%
CGCTTCAGGCCCATTGGGTC+GGG + chr1_4:5131187-5131206 Msa0145440:intron 65.0%
CACGCTTCAGCCCGACCCAA+TGG - chr1_4:5131200-5131219 None:intergenic 65.0%
TTGGGTCGGGCTGAAGCGTG+AGG + chr1_4:5131200-5131219 Msa0145440:intron 65.0%
TGGGTCGGGCTGAAGCGTGA+GGG + chr1_4:5131201-5131220 Msa0145440:intron 65.0%
GTTGGGCCTGAAGCGTGAGG+GGG - chr1_4:5131301-5131320 None:intergenic 65.0%
CGTTGGGCCTGAAGCGTGAG+GGG - chr1_4:5131126-5131145 None:intergenic 65.0%
CTCGTTGGGCCTGAAGCGTG+AGG - chr1_4:5131304-5131323 None:intergenic 65.0%
GGGTCGGGCTGAAGCGTGAG+GGG + chr1_4:5131202-5131221 Msa0145440:intron 70.0%
GGTCGGGCTGAAGCGTGAGG+GGG + chr1_4:5131203-5131222 Msa0145440:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5129424 5132353 5129424 ID=Msa0145440;Name=Msa0145440
chr1_4 mRNA 5129424 5132353 5129424 ID=Msa0145440-mRNA-1;Parent=Msa0145440;Name=Msa0145440-mRNA-1;_AED=0.40;_eAED=0.40;_QI=42|0.66|0.75|1|0.66|0.5|4|250|346
chr1_4 exon 5129424 5129576 5129424 ID=Msa0145440-mRNA-1:exon:2126;Parent=Msa0145440-mRNA-1
chr1_4 exon 5130282 5130840 5130282 ID=Msa0145440-mRNA-1:exon:2127;Parent=Msa0145440-mRNA-1
chr1_4 exon 5131631 5131707 5131631 ID=Msa0145440-mRNA-1:exon:2128;Parent=Msa0145440-mRNA-1
chr1_4 exon 5131810 5132353 5131810 ID=Msa0145440-mRNA-1:exon:2129;Parent=Msa0145440-mRNA-1
chr1_4 five_prime_UTR 5129424 5129465 5129424 ID=Msa0145440-mRNA-1:five_prime_utr;Parent=Msa0145440-mRNA-1
chr1_4 CDS 5129466 5129576 5129466 ID=Msa0145440-mRNA-1:cds;Parent=Msa0145440-mRNA-1
chr1_4 CDS 5130282 5130840 5130282 ID=Msa0145440-mRNA-1:cds;Parent=Msa0145440-mRNA-1
chr1_4 CDS 5131631 5131707 5131631 ID=Msa0145440-mRNA-1:cds;Parent=Msa0145440-mRNA-1
chr1_4 CDS 5131810 5132103 5131810 ID=Msa0145440-mRNA-1:cds;Parent=Msa0145440-mRNA-1
chr1_4 three_prime_UTR 5132104 5132353 5132104 ID=Msa0145440-mRNA-1:three_prime_utr;Parent=Msa0145440-mRNA-1
Gene Sequence

>Msa0145440

ATGGAAGTAGATGGAAGCAGATCTTGGGAAGAAGATATTTACTGGAATCATTTTCAGTTCATCCATTTCACCCAATTTCTTAAAACTACCACCAATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGGATATTGGGCTGACAACTAAAGATGATACTGTTTACTTCACGGACGGTTGGCAACGTTTTGTGAAAGATCACTCTTTGAAACAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTCTTAATCTTTGATGGAGATAACTTTTGTGAGAAGGCAACTTCTTATTTTGTGGGAAAATGTGGACATGCTCAAACTGAACAAGGGGATAGCAAGGCAAAGGACAATAACACTTCTGCTTTTAATGCTGGTGTTGAGTCTGCTTCCCCTGAGCAGTTCATGGCTGATGCAGTCACTAAGACCACACCTGTAGCGGTTCCCTCCCAAAAAACCAGCAAGAGGACCAAGAAGAAGCCTGTTAAAGAAGTTACACCTGTCCAGACTAAGAAGAGGGGAAGACGACCAAAAACAGCTAATTCTTTTGAGAGATCACATGATTTGGTGGTTTGTAACAAGGAACTCTCAGCCCAATCATTTACTTCCTCTTTTCCATATTTTGTTAAAATACTTAAAAACGGCAATGTTGGTGGTTCGCGTACACTGAGAATCCCGCGTCGTTTCACTGCTGCACATCTCCCCGACGACAAAACAGAAGTTACGCTTCGAAATTCAAGAGGCGAATGTTGGACCGTGAACTCAGTCCCATATGCTAAACGAGGAATGCTTCACACCTTTTGTGGGGGATGGATAACCTTTGTTCGTGATAATGGCATCAATTTTGGTGACACATGCATTTTTGAGCTTGTTTCTGATTATGTGATGCAGGTTCATATATTTGGGGCTGGAAAGGAAAGTATTGACAATCAAAATGGACATGTGAAACCTGATAACTTGTGA

Protein sequence

>Msa0145440

MEVDGSRSWEEDIYWNHFQFIHFTQFLKTTTNFQQQLALPKTFSDNLKKKLPENVTLKGPSGVVWDIGLTTKDDTVYFTDGWQRFVKDHSLKQNDFLVFKYNGESLFEVLIFDGDNFCEKATSYFVGKCGHAQTEQGDSKAKDNNTSAFNAGVESASPEQFMADAVTKTTPVAVPSQKTSKRTKKKPVKEVTPVQTKKRGRRPKTANSFERSHDLVVCNKELSAQSFTSSFPYFVKILKNGNVGGSRTLRIPRRFTAAHLPDDKTEVTLRNSRGECWTVNSVPYAKRGMLHTFCGGWITFVRDNGINFGDTCIFELVSDYVMQVHIFGAGKESIDNQNGHVKPDNL*