AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017770 MtrunA17_Chr1g0152031 95.925 589 11 1 1 589 1 576 0.0 1154
Msa0017770 MtrunA17_Chr1g0152031 96.907 194 6 0 650 843 575 768 6.83e-126 396
Msa0017770 MtrunA17_Chr6g0453641 42.475 598 318 7 1 589 1 581 1.06e-157 477
Msa0017770 MtrunA17_Chr6g0453641 41.284 109 64 0 650 758 580 688 1.47e-21 100
Msa0017770 MtrunA17_Chr4g0042751 41.709 597 328 6 1 589 1 585 7.77e-146 446
Msa0017770 MtrunA17_Chr4g0042751 41.732 127 69 2 650 771 584 710 8.92e-25 110
Msa0017770 MtrunA17_Chr7g0217981 40.193 622 323 8 1 589 1 606 7.92e-140 432
Msa0017770 MtrunA17_Chr7g0217981 43.119 109 62 0 650 758 605 713 3.04e-27 118
Msa0017770 MtrunA17_Chr5g0418061 42.327 593 327 6 1 589 1 582 6.17e-137 423
Msa0017770 MtrunA17_Chr5g0418061 38.095 126 74 1 650 771 581 706 8.35e-21 97.8
Msa0017770 MtrunA17_Chr5g0439871 29.654 607 389 9 9 589 10 604 4.86e-93 309
Msa0017770 MtrunA17_Chr7g0259591 29.279 666 423 13 3 634 4 655 2.47e-90 301
Msa0017770 MtrunA17_Chr5g0409801 28.594 633 415 9 9 612 10 634 1.36e-87 295
Msa0017770 MtrunA17_Chr5g0409801 30.000 110 77 0 650 759 605 714 2.13e-12 71.2
Msa0017770 MtrunA17_Chr4g0075301 29.981 517 336 6 9 506 10 519 1.45e-73 250
Msa0017770 MtrunA17_Chr3g0135291 73.514 185 48 1 410 593 3 187 3.93e-73 238
Msa0017770 MtrunA17_Chr3g0135261 67.568 148 47 1 1 148 1 147 3.73e-66 217
Msa0017770 MtrunA17_Chr2g0285541 28.106 644 412 16 1 612 1 625 3.07e-64 229
Msa0017770 MtrunA17_Chr3g0084121 41.869 289 166 2 303 589 5 293 2.27e-58 205
Msa0017770 MtrunA17_Chr3g0084121 37.008 127 74 2 650 772 292 416 2.11e-19 91.7
Msa0017770 MtrunA17_Chr3g0135301 60.690 145 53 1 652 792 25 169 1.25e-49 172
Msa0017770 MtrunA17_Chr3g0135281 50.602 166 69 3 242 405 1 155 3.11e-46 162
Msa0017770 MtrunA17_Chr3g0135271 72.857 70 19 0 164 233 2 71 9.12e-28 107
Msa0017770 MtrunA17_Chr3g0084141 43.299 97 55 0 1 97 1 97 2.95e-20 86.7
Msa0017770 MtrunA17_Chr3g0084131 33.974 156 97 4 78 232 38 188 3.72e-17 81.3
Msa0017770 MtrunA17_Chr5g0412041 84.091 44 7 0 611 654 199 242 2.01e-16 83.6
Msa0017770 MtrunA17_Chr4g0075291 31.818 110 75 0 650 759 74 183 9.92e-13 68.9
Msa0017770 MtrunA17_Chr7g0223561 67.213 61 19 1 592 652 263 322 6.18e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017770 AT1G58520.4 59.696 593 225 4 1 589 1 583 0.0 706
Msa0017770 AT1G58520.4 56.800 125 51 1 650 771 582 706 2.19e-35 144
Msa0017770 AT1G58520.1 59.696 593 225 4 1 589 1 583 0.0 706
Msa0017770 AT1G58520.1 56.800 125 51 1 650 771 582 706 2.19e-35 144
Msa0017770 AT1G58520.7 59.696 593 225 4 1 589 1 583 0.0 706
Msa0017770 AT1G58520.7 56.800 125 51 1 650 771 582 706 2.19e-35 144
Msa0017770 AT1G58520.6 59.696 593 225 4 1 589 1 583 0.0 706
Msa0017770 AT1G58520.6 56.800 125 51 1 650 771 582 706 2.19e-35 144
Msa0017770 AT1G58520.2 59.696 593 225 4 1 589 1 583 0.0 706
Msa0017770 AT1G58520.2 56.800 125 51 1 650 771 582 706 2.19e-35 144
Msa0017770 AT1G10090.1 57.432 592 237 4 1 589 1 580 0.0 677
Msa0017770 AT1G10090.1 52.593 135 62 1 650 782 579 713 2.35e-34 141
Msa0017770 AT1G58520.5 57.806 474 187 3 119 589 2 465 0.0 545
Msa0017770 AT1G58520.5 56.800 125 51 1 650 771 464 588 9.45e-36 144
Msa0017770 AT1G69450.3 37.845 761 420 6 1 758 1 711 2.72e-171 513
Msa0017770 AT3G01100.2 40.970 598 329 6 1 589 1 583 2.29e-148 449
Msa0017770 AT3G01100.1 40.970 598 329 6 1 589 1 583 4.10e-147 450
Msa0017770 AT3G01100.1 43.443 122 69 0 650 771 582 703 9.30e-27 117
Msa0017770 AT3G01100.4 40.970 598 329 6 1 589 47 629 3.61e-146 449
Msa0017770 AT3G01100.4 43.443 122 69 0 650 771 628 749 1.27e-26 117
Msa0017770 AT1G69450.2 40.372 592 335 4 1 589 1 577 7.53e-141 434
Msa0017770 AT1G69450.2 43.119 109 62 0 650 758 576 684 2.03e-24 110
Msa0017770 AT1G69450.1 40.372 592 335 4 1 589 1 577 7.53e-141 434
Msa0017770 AT1G69450.1 43.119 109 62 0 650 758 576 684 2.03e-24 110
Msa0017770 AT3G01100.3 39.323 473 266 4 123 589 11 468 9.25e-110 348
Msa0017770 AT3G01100.3 43.443 122 69 0 650 771 467 588 6.03e-27 117
Msa0017770 AT3G54510.3 36.745 596 345 8 5 589 5 579 5.10e-106 338
Msa0017770 AT3G54510.2 37.205 594 345 8 5 589 5 579 7.34e-105 340
Msa0017770 AT3G54510.2 35.938 128 76 1 650 771 578 705 2.31e-20 97.1
Msa0017770 AT1G11960.2 30.782 614 388 10 9 595 10 613 1.26e-96 315
Msa0017770 AT1G11960.1 30.189 636 402 11 9 612 10 635 2.63e-95 316
Msa0017770 AT1G11960.1 36.486 74 47 0 650 723 606 679 6.97e-11 66.6
Msa0017770 AT1G11960.3 30.189 636 402 11 9 612 10 635 2.63e-95 316
Msa0017770 AT1G11960.3 36.486 74 47 0 650 723 606 679 6.97e-11 66.6
Msa0017770 AT4G15430.2 30.564 638 397 12 9 612 10 635 2.40e-94 313
Msa0017770 AT4G15430.2 31.298 131 83 2 650 773 606 736 1.98e-11 68.2
Msa0017770 AT4G15430.1 30.564 638 397 12 9 612 10 635 2.41e-94 313
Msa0017770 AT4G15430.1 31.852 135 78 4 650 773 606 737 2.63e-11 67.8
Msa0017770 AT4G22120.2 30.033 606 392 7 9 589 10 608 7.13e-94 312
Msa0017770 AT4G22120.2 36.486 74 47 0 650 723 607 680 7.27e-12 69.7
Msa0017770 AT4G22120.4 30.033 606 392 7 9 589 10 608 7.13e-94 312
Msa0017770 AT4G22120.4 36.486 74 47 0 650 723 607 680 7.27e-12 69.7
Msa0017770 AT4G22120.5 30.033 606 392 7 9 589 10 608 7.13e-94 312
Msa0017770 AT4G22120.5 36.486 74 47 0 650 723 607 680 7.27e-12 69.7
Msa0017770 AT4G22120.1 30.033 606 392 7 9 589 10 608 7.13e-94 312
Msa0017770 AT4G22120.1 36.486 74 47 0 650 723 607 680 7.27e-12 69.7
Msa0017770 AT4G22120.6 30.033 606 392 7 9 589 10 608 7.13e-94 312
Msa0017770 AT4G22120.6 36.486 74 47 0 650 723 607 680 7.27e-12 69.7
Msa0017770 AT4G22120.3 30.033 606 392 7 9 589 10 608 7.13e-94 312
Msa0017770 AT4G22120.3 36.486 74 47 0 650 723 607 680 7.27e-12 69.7
Msa0017770 AT4G02900.4 30.317 630 395 10 9 606 10 627 9.99e-94 311
Msa0017770 AT4G02900.4 30.000 110 77 0 650 759 604 713 6.55e-11 66.6
Msa0017770 AT4G02900.3 30.317 630 395 10 9 606 10 627 9.99e-94 311
Msa0017770 AT4G02900.3 30.000 110 77 0 650 759 604 713 6.55e-11 66.6
Msa0017770 AT4G02900.1 30.317 630 395 10 9 606 10 627 2.39e-93 311
Msa0017770 AT4G02900.1 30.000 110 77 0 650 759 604 713 6.63e-11 66.6
Msa0017770 AT4G04340.2 30.313 607 390 9 9 589 10 609 9.41e-91 303
Msa0017770 AT4G04340.2 37.838 74 46 0 650 723 608 681 2.67e-12 71.2
Msa0017770 AT4G04340.1 30.313 607 390 9 9 589 10 609 9.41e-91 303
Msa0017770 AT4G04340.1 37.838 74 46 0 650 723 608 681 2.67e-12 71.2
Msa0017770 AT4G04340.3 30.313 607 390 9 9 589 10 609 9.41e-91 303
Msa0017770 AT4G04340.3 37.838 74 46 0 650 723 608 681 2.67e-12 71.2
Msa0017770 AT3G21620.1 30.269 631 406 9 9 612 10 633 3.88e-90 301
Msa0017770 AT1G62320.4 30.198 606 388 9 9 589 10 605 5.70e-87 293
Msa0017770 AT1G62320.4 27.429 175 117 3 650 824 604 768 3.84e-11 67.4
Msa0017770 AT1G62320.1 30.198 606 388 9 9 589 10 605 7.83e-87 293
Msa0017770 AT1G62320.2 30.179 613 391 10 9 594 10 612 2.16e-86 288
Msa0017770 AT1G62320.3 30.263 608 387 10 9 589 10 607 7.47e-86 290
Msa0017770 AT1G62320.3 27.429 175 117 3 650 824 606 770 3.81e-11 67.4
Msa0017770 AT1G62320.5 30.263 608 387 10 9 589 10 607 7.47e-86 290
Msa0017770 AT1G62320.5 27.429 175 117 3 650 824 606 770 3.81e-11 67.4
Msa0017770 AT1G32090.1 29.460 611 388 11 9 589 10 607 4.31e-83 283
Msa0017770 AT1G32090.1 33.628 113 75 0 650 762 606 718 6.28e-12 70.1
Msa0017770 AT3G54510.5 35.600 500 299 7 94 589 4 484 2.48e-78 262
Msa0017770 AT3G54510.4 35.600 500 299 7 94 589 4 484 1.77e-77 263
Msa0017770 AT3G54510.4 35.938 128 76 1 650 771 483 610 1.75e-20 97.1
Msa0017770 AT3G54510.1 35.600 500 299 7 94 589 4 484 1.77e-77 263
Msa0017770 AT3G54510.1 35.938 128 76 1 650 771 483 610 1.75e-20 97.1
Msa0017770 AT4G02900.2 31.723 476 293 8 151 606 3 466 1.66e-76 261
Msa0017770 AT4G02900.2 30.000 110 77 0 650 759 443 552 6.07e-11 66.6
Msa0017770 AT3G54510.6 35.610 410 242 6 184 589 9 400 2.68e-62 219
Msa0017770 AT3G54510.6 35.938 128 76 1 650 771 399 526 1.09e-20 97.4
Msa0017770 AT1G30360.1 25.232 646 426 14 1 611 1 624 4.07e-51 192
Msa0017770 AT4G35870.1 21.481 540 347 15 56 531 70 596 3.81e-14 77.0

Find 219 sgRNAs with CRISPR-Local

Find 647 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTAGACACGTTGATTTC+TGG 0.158124 1_1:-29676962 Msa0017770:CDS
TAAATTGTAAATTGTGTAAA+TGG 0.174141 1_1:-29668773 Msa0017770:three_prime_UTR
CTATTACTGTTTGGATTTCT+TGG 0.183449 1_1:-29670944 Msa0017770:CDS
GTTATCTGTCTATCTTTAAT+TGG 0.185020 1_1:+29668731 None:intergenic
GTCATCTGGTTGGGCAAGTC+TGG 0.198216 1_1:-29671086 Msa0017770:CDS
TGGGTTCACCTGTTCTATTC+TGG 0.206620 1_1:-29670924 Msa0017770:CDS
CGCTTATTCAACTACTCTTT+TGG 0.216396 1_1:-29678292 Msa0017770:five_prime_UTR
GTGTACCATATAGGCAAATT+TGG 0.231629 1_1:-29672605 Msa0017770:CDS
CGGATCCAAATTTGCCTATA+TGG 0.233087 1_1:+29672600 None:intergenic
ATATGCTTTGAATTCAATTA+TGG 0.248492 1_1:-29678643 Msa0017770:five_prime_UTR
TGGAGCATTCAGATGGGCTT+GGG 0.249984 1_1:+29669133 None:intergenic
TTCAGGTGATGGTCATGATT+TGG 0.274094 1_1:-29677184 Msa0017770:intron
CCCCTTGTCCTCTGGTGGGC+TGG 0.281593 1_1:+29669113 None:intergenic
ACTGCCTTTGCAAGTGTTGC+AGG 0.282164 1_1:+29671366 None:intergenic
TTCCTTCCACTGCGGGAAAT+AGG 0.287960 1_1:+29671504 None:intergenic
TTGTCAAGTTTCATAGTATA+GGG 0.304968 1_1:-29677128 Msa0017770:five_prime_UTR
TTACCTACCAAGTGTGATAT+TGG 0.315370 1_1:-29671583 Msa0017770:CDS
CAATGAGTTGGATCCAAATA+TGG 0.319493 1_1:-29670130 Msa0017770:intron
TTGCTCAACTTATCGCGCTT+GGG 0.321315 1_1:-29669450 Msa0017770:CDS
ATGCGGCATGGGTTGTTTGT+AGG 0.325375 1_1:+29669158 None:intergenic
CTGGAGCATTCAGATGGGCT+TGG 0.325575 1_1:+29669132 None:intergenic
GCTGAATTGCTTCTAAATAC+TGG 0.325661 1_1:+29669328 None:intergenic
GAAAATAGGCTTAGATGGTT+TGG 0.331704 1_1:-29670282 Msa0017770:CDS
TATTACTGTTTGGATTTCTT+GGG 0.340448 1_1:-29670943 Msa0017770:CDS
CCAGAGGACAAGGGGATTGC+TGG 0.342797 1_1:-29669105 Msa0017770:CDS
AAGTCGGTATGCTGCTCTTA+TGG 0.344060 1_1:-29672715 Msa0017770:CDS
CAGTGAACATCGTGTGGTTC+AGG 0.344141 1_1:+29672639 None:intergenic
TTGTAAGGATAGTCGTGTTC+AGG 0.344528 1_1:-29676842 Msa0017770:intron
TGCCACACTTATAAATCATT+TGG 0.345441 1_1:+29674580 None:intergenic
AAACATCAAATCCTATGTTA+TGG 0.349504 1_1:-29672677 Msa0017770:CDS
TGACAGAAAATAGGCTTAGA+TGG 0.351252 1_1:-29670287 Msa0017770:CDS
CACACTTGTGGTTGGCGCCT+TGG 0.354446 1_1:-29678815 Msa0017770:five_prime_UTR
TGTTGTGCCATGTTGCTGTT+TGG 0.363997 1_1:-29673838 Msa0017770:CDS
CCCGAAACACTTTCATTTCG+TGG 0.364224 1_1:-29678860 None:intergenic
GGGCTTGGGGCATGCGGCAT+GGG 0.367202 1_1:+29669147 None:intergenic
AACATCTGAGAATGAGATAT+TGG 0.369903 1_1:-29676892 Msa0017770:CDS
GTGCTTCCTGTGAATTATTA+CGG 0.376357 1_1:-29675764 Msa0017770:CDS
CTTTCATTTCGTGGCCAGTT+AGG 0.376708 1_1:-29678851 None:intergenic
GTTAAGGATGATACACTTAA+TGG 0.376934 1_1:-29671001 Msa0017770:CDS
GTTCCTAGGCTATTACTGTT+TGG 0.381514 1_1:-29670953 Msa0017770:CDS
TTCCCGGTTGGGTTGGTACA+AGG 0.384788 1_1:-29672528 Msa0017770:CDS
GTTGTGCCATGTTGCTGTTT+GGG 0.390922 1_1:-29673837 Msa0017770:CDS
TTGAGGCTACTACATATTAC+TGG 0.392657 1_1:-29674729 Msa0017770:CDS
AAAGTACACATTAACATTGC+TGG 0.397674 1_1:+29677007 None:intergenic
AATCATTTGGTGAGACAGAT+AGG 0.400641 1_1:+29674593 None:intergenic
TCACCACCCGCCTCACATAT+TGG 0.404617 1_1:+29671610 None:intergenic
TGGGCTTGGGGCATGCGGCA+TGG 0.405225 1_1:+29669146 None:intergenic
AACCATTAGAAAAGACTTAG+AGG 0.406494 1_1:-29670154 Msa0017770:CDS
CCAACATTCGTGTACCATAT+AGG 0.408446 1_1:-29672614 Msa0017770:CDS
AGATCAAATGGAGGAGAGTC+AGG 0.409734 1_1:-29670217 Msa0017770:CDS
TAACCCTGAGTAGGAATCTC+TGG 0.418479 1_1:+29671020 None:intergenic
AATAAGAAGGGAAGCATTAG+AGG 0.420508 1_1:+29670899 None:intergenic
CCAGCAATCCCCTTGTCCTC+TGG 0.422853 1_1:+29669105 None:intergenic
TCTTCTTACAACGGCATCTA+CGG 0.424045 1_1:+29670242 None:intergenic
TAATAATACTAACCTGGTTT+CGG 0.428813 1_1:+29670846 None:intergenic
TTTCATTTCGTGGCCAGTTA+GGG 0.429075 1_1:-29678850 Msa0017770:five_prime_UTR
TTTGCTCAACTTATCGCGCT+TGG 0.429584 1_1:-29669451 Msa0017770:CDS
TTAATTAGATGTTCATGCAC+TGG 0.432990 1_1:+29668840 None:intergenic
GTGACTAAATGATTATACTT+TGG 0.433877 1_1:-29678582 Msa0017770:five_prime_UTR
GGTGGGCTGGAGCATTCAGA+TGG 0.436201 1_1:+29669126 None:intergenic
ATGTCGAAGAAGGTTCAAAA+TGG 0.438635 1_1:-29675682 Msa0017770:intron
GTAAGCATAACCGCCCTAAC+TGG 0.440294 1_1:+29678837 None:intergenic
GCAATCCCCTTGTCCTCTGG+TGG 0.441289 1_1:+29669108 None:intergenic
TGATTAATTATTCTATAAAG+TGG 0.441432 1_1:-29678613 Msa0017770:five_prime_UTR
TTAAGTACCCCTGCCAGAAA+AGG 0.441819 1_1:+29672471 None:intergenic
AGCATTCTCTGACAGAAAAT+AGG 0.442325 1_1:-29670296 Msa0017770:CDS
TAAGATGGTTTCTAATGAGA+TGG 0.442420 1_1:-29673796 Msa0017770:CDS
AAGCCTTGTACCAACCCAAC+CGG 0.442678 1_1:+29672525 None:intergenic
TTGAAAATTGATAGCTGAAG+TGG 0.444492 1_1:-29668652 Msa0017770:three_prime_UTR
AAGAGAAATAAATAGTGGTT+AGG 0.445715 1_1:-29678498 Msa0017770:five_prime_UTR
GAGATTCCTACTCAGGGTTA+AGG 0.445872 1_1:-29671017 Msa0017770:CDS
AACATCAAATCCTATGTTAT+GGG 0.446784 1_1:-29672676 Msa0017770:CDS
CTGACATAGATACGAGGAAA+AGG 0.449831 1_1:-29673746 Msa0017770:CDS
TACATTACAAAATACGATAG+TGG 0.449834 1_1:-29669523 Msa0017770:CDS
TCATCTGGTTGGGCAAGTCT+GGG 0.450323 1_1:-29671085 Msa0017770:CDS
CCTATATGGTACACGAATGT+TGG 0.450349 1_1:+29672614 None:intergenic
GCATATACCTTTGGAGTCAC+TGG 0.450593 1_1:-29675723 Msa0017770:CDS
ACCGTTGCGTTGTGTGCAAT+AGG 0.452936 1_1:+29669487 None:intergenic
AGTCAGGTTAAAAGAGGTAG+AGG 0.455911 1_1:-29670201 Msa0017770:CDS
CTCCAGCCCACCAGAGGACA+AGG 0.456637 1_1:-29669115 Msa0017770:CDS
TGCACTGGATCGGTCACATC+AGG 0.458565 1_1:+29668855 None:intergenic
GTGTACACAAACGCACGTTC+TGG 0.458695 1_1:-29678405 Msa0017770:five_prime_UTR
TTTGTCAAGTTTCATAGTAT+AGG 0.458860 1_1:-29677129 Msa0017770:five_prime_UTR
TCGCACACTGAGTCCGACTT+TGG 0.459007 1_1:-29668940 Msa0017770:CDS
GATTTGTTCCCTCTCCTAGC+TGG 0.459156 1_1:-29676932 Msa0017770:CDS
CATACCATACAGAAGTTCCT+AGG 0.461239 1_1:-29670967 Msa0017770:CDS
AGATGAACAATGTGGAAAGA+TGG 0.464525 1_1:-29669208 Msa0017770:CDS
GGAGCATTCAGATGGGCTTG+GGG 0.465800 1_1:+29669134 None:intergenic
CAGAAAATGTAGCCATCTTA+CGG 0.467606 1_1:+29672580 None:intergenic
GATTTATGAACAATTGCGTT+CGG 0.468079 1_1:-29669181 Msa0017770:CDS
TATTCCAGAGATTCCTACTC+AGG 0.471830 1_1:-29671024 Msa0017770:CDS
TTAAAGAACACAAAAGCAGC+TGG 0.472385 1_1:+29672738 None:intergenic
ACCATTGAGAATGTCGAAGA+AGG 0.477723 1_1:-29675692 Msa0017770:CDS
ACTACATAAGCATATACCTT+TGG 0.478047 1_1:-29675732 Msa0017770:CDS
CCTGTGAATTATTACGGTAA+AGG 0.482288 1_1:-29675758 Msa0017770:CDS
TGTAAGAAGAGTAGATCAAA+TGG 0.483895 1_1:-29670229 Msa0017770:CDS
CCTTTGCAAGTGTTGCAGGC+AGG 0.484817 1_1:+29671370 None:intergenic
ACCTTCTTCGACATTCTCAA+TGG 0.487024 1_1:+29675691 None:intergenic
ACATTACAAAATACGATAGT+GGG 0.487202 1_1:-29669522 Msa0017770:CDS
CTGAACCACACGATGTTCAC+TGG 0.487471 1_1:-29672638 Msa0017770:CDS
CATGAACATCTAATTAAAGA+TGG 0.487890 1_1:-29668834 Msa0017770:CDS
TAGAGGTGCCAGAATAGAAC+AGG 0.488517 1_1:+29670916 None:intergenic
GTAAAATGACTTAGACTTGG+AGG 0.488885 1_1:+29674702 None:intergenic
GTACCAACCCAACCGGGAAA+AGG 0.490209 1_1:+29672532 None:intergenic
CAGCAACATGGCACAACACC+TGG 0.490933 1_1:+29673843 None:intergenic
GAGTCCGACTTTGGATATAT+CGG 0.493012 1_1:-29668931 Msa0017770:CDS
CAATCCCCTTGTCCTCTGGT+GGG 0.494251 1_1:+29669109 None:intergenic
GATATTGGCTATTGGTGGCT+TGG 0.497397 1_1:-29676877 Msa0017770:CDS
GAGAATGAGATATTGGCTAT+TGG 0.497619 1_1:-29676885 Msa0017770:CDS
TCATGATTGGTACGCGATTG+TGG 0.501597 1_1:+29678687 None:intergenic
TAGACACGTTGATTTCTGGC+TGG 0.504415 1_1:-29676958 Msa0017770:CDS
TGCAAAGGCAGTGCCAGCTC+AGG 0.505832 1_1:-29671355 Msa0017770:intron
TCTAGATAAACCACCTGAGC+TGG 0.506046 1_1:+29671342 None:intergenic
AAACGCTCCACAGTTTCAGC+TGG 0.507858 1_1:-29669415 Msa0017770:CDS
TCGGAAAATAGTTGCAAGCC+AGG 0.508564 1_1:-29673861 Msa0017770:CDS
CAGAGGACAAGGGGATTGCT+GGG 0.509600 1_1:-29669104 Msa0017770:CDS
TGGAATAGATTGTATAAAAG+AGG 0.511141 1_1:+29671040 None:intergenic
GAAAGCTCCTTACAAAGTAA+AGG 0.511239 1_1:+29674866 None:intergenic
TTGGATATATCGGTACTTGG+TGG 0.513625 1_1:-29668921 Msa0017770:CDS
TCAGATGGGCTTGGGGCATG+CGG 0.514701 1_1:+29669141 None:intergenic
TATGCTTACACACTTGTGGT+TGG 0.514923 1_1:-29678823 Msa0017770:five_prime_UTR
GAGGAGAGTCAGGTTAAAAG+AGG 0.517218 1_1:-29670207 Msa0017770:CDS
AGACTTAGAGGTCAATGAGT+TGG 0.517437 1_1:-29670142 Msa0017770:CDS
TTCTTATTCAATGTACAAGC+GGG 0.517512 1_1:+29668882 None:intergenic
AAGATGGTTTCTAATGAGAT+GGG 0.517681 1_1:-29673795 Msa0017770:CDS
GGACTCAGTGTGCGATGGAT+AGG 0.519782 1_1:+29668948 None:intergenic
TTCTTGTCCGATCAATTCCC+TGG 0.520696 1_1:-29674677 Msa0017770:CDS
ACTTCAGAAGATATCGAGAA+AGG 0.520959 1_1:-29669081 Msa0017770:intron
TGCTCAACTTATCGCGCTTG+GGG 0.522102 1_1:-29669449 Msa0017770:CDS
AAGTACACATTAACATTGCT+GGG 0.522875 1_1:+29677008 None:intergenic
GTGGGCTGGAGCATTCAGAT+GGG 0.523832 1_1:+29669127 None:intergenic
ACTTTGGATATATCGGTACT+TGG 0.524263 1_1:-29668924 Msa0017770:CDS
TTTAATATCCAGCTAGGAGA+GGG 0.528067 1_1:+29676924 None:intergenic
GCAAATTTGGATCCGTAAGA+TGG 0.529157 1_1:-29672592 Msa0017770:CDS
CTAGGAACTTCTGTATGGTA+TGG 0.529861 1_1:+29670968 None:intergenic
GTTGAAAATAGCATCATCAA+TGG 0.531058 1_1:+29671537 None:intergenic
CTGAATTGCTTCTAAATACT+GGG 0.535226 1_1:+29669329 None:intergenic
CTAGCTGGATATTAAAAGCA+TGG 0.537486 1_1:-29676917 Msa0017770:CDS
CAAGGTACTTAAAGATTCAT+CGG 0.537558 1_1:-29673880 Msa0017770:CDS
ATTTAGAAGCAATTCAGCAC+AGG 0.537895 1_1:-29669323 Msa0017770:intron
CGGTTATGCTTACACACTTG+TGG 0.538305 1_1:-29678827 Msa0017770:five_prime_UTR
ATAGCCTAGGAACTTCTGTA+TGG 0.540482 1_1:+29670963 None:intergenic
GATAGCTGAAGTGGCTATTG+AGG 0.544847 1_1:-29668643 Msa0017770:three_prime_UTR
TATGTGAGGCGGGTGGTGAC+TGG 0.546237 1_1:-29671606 Msa0017770:CDS
AGAATTCTTCATCCGTGCAC+TGG 0.549877 1_1:-29678247 Msa0017770:intron
TGACATAGATACGAGGAAAA+GGG 0.550787 1_1:-29673745 Msa0017770:intron
CTTCTTACAACGGCATCTAC+GGG 0.551114 1_1:+29670243 None:intergenic
CCTTTACCGTAATAATTCAC+AGG 0.551530 1_1:+29675758 None:intergenic
AACCATCTTAAAAGAATCTG+TGG 0.551932 1_1:+29673809 None:intergenic
GTCCTATTTCCCGCAGTGGA+AGG 0.553291 1_1:-29671506 Msa0017770:CDS
TTGCAGCCAATATGTGAGGC+GGG 0.553388 1_1:-29671616 Msa0017770:intron
AGTGTGCGATGGATAGGTCC+TGG 0.558406 1_1:+29668954 None:intergenic
AAGAATGGTAACAATGAGCA+AGG 0.559742 1_1:+29669381 None:intergenic
AATAAATCCAGCTGAAACTG+TGG 0.560944 1_1:+29669408 None:intergenic
ATGTTAATGTGTACTTTGCA+CGG 0.561803 1_1:-29677001 Msa0017770:CDS
GAAAAGGAACACAAGCATGA+AGG 0.562241 1_1:+29672548 None:intergenic
ATGTCTGTCGCCCATAACAT+AGG 0.562277 1_1:+29672666 None:intergenic
CAAAATGTAAGTCGTGAAGA+AGG 0.562577 1_1:+29671108 None:intergenic
GAAATCGTTTCCTACAGTAC+TGG 0.564107 1_1:+29669353 None:intergenic
CCAGCCCACCAGAGGACAAG+GGG 0.566661 1_1:-29669113 Msa0017770:CDS
CATAGTATAGGGAGCAAGGA+TGG 0.571441 1_1:-29677117 Msa0017770:exon
TTATCTTGTTTACCGAAACC+AGG 0.571874 1_1:-29670858 Msa0017770:intron
AAGAAGAGTAGATCAAATGG+AGG 0.572060 1_1:-29670226 Msa0017770:CDS
GAAGGAAGAAAAGTGCATGT+TGG 0.576960 1_1:-29671488 Msa0017770:CDS
GTGTGAAGAGAAATAAATAG+TGG 0.577831 1_1:-29678503 Msa0017770:five_prime_UTR
GAAAATAGCATCATCAATGG+TGG 0.583047 1_1:+29671540 None:intergenic
GTTTCATAGTATAGGGAGCA+AGG 0.583254 1_1:-29677121 Msa0017770:five_prime_UTR
TAAAGAACACAAAAGCAGCT+GGG 0.584910 1_1:+29672739 None:intergenic
TAGCTGGATATTAAAAGCAT+GGG 0.585769 1_1:-29676916 Msa0017770:CDS
TTGATCTACTCTTCTTACAA+CGG 0.585966 1_1:+29670233 None:intergenic
AAGTCGGACTCAGTGTGCGA+TGG 0.587730 1_1:+29668943 None:intergenic
ATAGCTGAAGTGGCTATTGA+GGG 0.589675 1_1:-29668642 Msa0017770:three_prime_UTR
ATAGTAAAATGACTTAGACT+TGG 0.590594 1_1:+29674699 None:intergenic
ATTCTTATTCAATGTACAAG+CGG 0.590606 1_1:+29668881 None:intergenic
AATGAGATATTGGCTATTGG+TGG 0.592820 1_1:-29676882 Msa0017770:CDS
CACCAAATGATTTATAAGTG+TGG 0.593061 1_1:-29674582 Msa0017770:CDS
TATGTTATGGGCGACAGACA+TGG 0.593760 1_1:-29672664 Msa0017770:CDS
CATTTCGTGGCCAGTTAGGG+CGG 0.594806 1_1:-29678847 Msa0017770:five_prime_UTR
CCTGCCTGCAACACTTGCAA+AGG 0.595894 1_1:-29671370 Msa0017770:CDS
GTATGATTCGCTTATAGACC+AGG 0.595966 1_1:+29674659 None:intergenic
TTTGCAGCCAATATGTGAGG+CGG 0.597047 1_1:-29671617 Msa0017770:intron
AATCCAAACAGTAATAGCCT+AGG 0.599075 1_1:+29670950 None:intergenic
TATCATCCTTAACCCTGAGT+AGG 0.601703 1_1:+29671011 None:intergenic
ATTCCAGAGATTCCTACTCA+GGG 0.601827 1_1:-29671023 Msa0017770:CDS
GCCTATTGCACACAACGCAA+CGG 0.603422 1_1:-29669488 Msa0017770:CDS
AGCCTTGTACCAACCCAACC+GGG 0.604843 1_1:+29672526 None:intergenic
TAGATGTTCATGCACTGGAT+CGG 0.605985 1_1:+29668845 None:intergenic
GCAAAACAAAGAAGAAAGTG+AGG 0.610997 1_1:+29678331 None:intergenic
GTCATTAAACAGACTAGACC+AGG 0.622117 1_1:-29668972 Msa0017770:CDS
AGTGCAGATGACACCAGTGA+TGG 0.623326 1_1:+29675793 None:intergenic
AATTAATATCGTTGTGTGTG+TGG 0.624038 1_1:-29677066 Msa0017770:CDS
AATAAAACCAATATCACACT+TGG 0.624954 1_1:+29671576 None:intergenic
TTCGGTAAACAAGATAAGCA+AGG 0.625117 1_1:+29670864 None:intergenic
AAACCAATATCACACTTGGT+AGG 0.625680 1_1:+29671580 None:intergenic
ACAAGAGCATTACTAAGTTG+AGG 0.625796 1_1:-29674746 Msa0017770:CDS
CATTACAAAATACGATAGTG+GGG 0.627166 1_1:-29669521 Msa0017770:CDS
GACAAATATCATAAACGATG+AGG 0.628139 1_1:+29677146 None:intergenic
TTATAGACCAGGGAATTGAT+CGG 0.638485 1_1:+29674670 None:intergenic
TCCAGCCCACCAGAGGACAA+GGG 0.640270 1_1:-29669114 Msa0017770:CDS
CGGGGCTGAACATATGTGCA+AGG 0.647655 1_1:-29673898 Msa0017770:CDS
TGGCAAAGTTCAGAAACTGA+AGG 0.650027 1_1:-29674562 Msa0017770:intron
GATAAGAAAGATGAACAATG+TGG 0.654302 1_1:-29669216 Msa0017770:CDS
GAATTTCCCAAACAGCAACA+TGG 0.654878 1_1:+29673831 None:intergenic
AATACATCCAGTGACTCCAA+AGG 0.656786 1_1:+29675716 None:intergenic
AGAATGGTAACAATGAGCAA+GGG 0.657327 1_1:+29669382 None:intergenic
CTGCCACGTGGCAAACACCA+AGG 0.657728 1_1:+29678798 None:intergenic
GAGGGTCCTATTTCCCGCAG+TGG 0.665419 1_1:-29671510 Msa0017770:CDS
TGAATGCTCCAGCCCACCAG+AGG 0.667039 1_1:-29669121 Msa0017770:CDS
AGTACCGATATATCCAAAGT+CGG 0.675445 1_1:+29668927 None:intergenic
GCGCCTTGGTGTTTGCCACG+TGG 0.676846 1_1:-29678801 Msa0017770:five_prime_UTR
TATGATTCGCTTATAGACCA+GGG 0.679006 1_1:+29674660 None:intergenic
ATTACAAAATACGATAGTGG+GGG 0.699626 1_1:-29669520 Msa0017770:CDS
GTAACGACTCAATGACAACA+AGG 0.706716 1_1:+29672849 None:intergenic
TTGGACCAGTGAACATCGTG+TGG 0.707722 1_1:+29672633 None:intergenic
GGAGGGATGGATCTGCCACG+TGG 0.730374 1_1:+29678786 None:intergenic
CAGCCAATATGTGAGGCGGG+TGG 0.743442 1_1:-29671613 Msa0017770:CDS
GAGACAGATAGGTTGATGCG+TGG 0.768122 1_1:+29674604 None:intergenic
TTAATGTGTACTTTGCACGG+AGG 0.779643 1_1:-29676998 Msa0017770:CDS
GCTACACTGACATAGATACG+AGG 0.780077 1_1:-29673752 Msa0017770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATATTAATTCATGAT+TGG + chr1_1:29668808-29668827 None:intergenic 10.0%
!! AAATAAAATAAAAACCTAAT+AGG - chr1_1:29671582-29671601 Msa0017770:CDS 10.0%
!!! TATTGTATTTTGAATTTTTT+AGG + chr1_1:29673124-29673143 None:intergenic 10.0%
!! AAAATTATAGTACATTTATA+TGG + chr1_1:29673164-29673183 None:intergenic 10.0%
!!! TATAAATGTACTATAATTTT+TGG - chr1_1:29673164-29673183 Msa0017770:intron 10.0%
!!! TTATTGATTCTATTTTATAT+GGG + chr1_1:29673298-29673317 None:intergenic 10.0%
!!! TATTTACTGTATTTTATTTT+AGG - chr1_1:29676750-29676769 Msa0017770:intron 10.0%
!!! TATTTTATTTTAGGAATTAA+GGG - chr1_1:29676759-29676778 Msa0017770:intron 10.0%
!! TATAATATAGGAATTATTAA+AGG - chr1_1:29677513-29677532 Msa0017770:intron 10.0%
!! AAATGTTAAAAATAAATCAT+GGG + chr1_1:29677885-29677904 None:intergenic 10.0%
!! TAAATGTTAAAAATAAATCA+TGG + chr1_1:29677886-29677905 None:intergenic 10.0%
!!! ATGATTTATTTTTAACATTT+AGG - chr1_1:29677885-29677904 Msa0017770:intron 10.0%
!! TGATTAATTATTCTATAAAG+TGG - chr1_1:29668866-29668885 Msa0017770:CDS 15.0%
!! ATGTGAATAAAAATCAAATA+GGG + chr1_1:29668947-29668966 None:intergenic 15.0%
!! AATGTGAATAAAAATCAAAT+AGG + chr1_1:29668948-29668967 None:intergenic 15.0%
!!! ATTGTTTTGATTTTTAGAAT+TGG - chr1_1:29669771-29669790 Msa0017770:intron 15.0%
!!! TTTTTAATACGTTTTGAATA+TGG - chr1_1:29669939-29669958 Msa0017770:intron 15.0%
!! TTAAATTCATTTATCATGTT+AGG + chr1_1:29670015-29670034 None:intergenic 15.0%
!!! TGATTTGAAATAACATAAAA+TGG + chr1_1:29671557-29671576 None:intergenic 15.0%
!!! CTTATTGATTCTATTTTATA+TGG + chr1_1:29673299-29673318 None:intergenic 15.0%
!!! GATTATAGTATTGATATAAA+TGG + chr1_1:29673328-29673347 None:intergenic 15.0%
!! GTAATTATATAAATCAATTC+AGG + chr1_1:29673771-29673790 None:intergenic 15.0%
!!! TTTAATTTGCTTATTTTAGA+TGG + chr1_1:29675562-29675581 None:intergenic 15.0%
!! TTATAACTTTCAAATTAGAT+TGG - chr1_1:29675692-29675711 Msa0017770:CDS 15.0%
!!! TTTTAAAGAGAAAAAAAATG+TGG - chr1_1:29675736-29675755 Msa0017770:CDS 15.0%
!!! TTTTTTGTTAATGTCTTATA+TGG - chr1_1:29676044-29676063 Msa0017770:intron 15.0%
!! AAAAAATAGATCAATAAGAA+GGG + chr1_1:29676595-29676614 None:intergenic 15.0%
!!! GTATTTTATTTTAGGAATTA+AGG - chr1_1:29676758-29676777 Msa0017770:intron 15.0%
!!! ATTTTATTTTAGGAATTAAG+GGG - chr1_1:29676760-29676779 Msa0017770:intron 15.0%
!!! TAGTTTTCTTTTTATTGAAA+AGG - chr1_1:29676831-29676850 Msa0017770:intron 15.0%
!! AAATTTATTAGATATTAAGG+GGG + chr1_1:29677033-29677052 None:intergenic 15.0%
!! CAAATTTATTAGATATTAAG+GGG + chr1_1:29677034-29677053 None:intergenic 15.0%
!! CCAAATTTATTAGATATTAA+GGG + chr1_1:29677035-29677054 None:intergenic 15.0%
!! ACCAAATTTATTAGATATTA+AGG + chr1_1:29677036-29677055 None:intergenic 15.0%
!! ATTTAAGTGATTAAGTTATT+GGG - chr1_1:29677114-29677133 Msa0017770:exon 15.0%
!! ATATTTGAGAATTAGAAAAT+GGG - chr1_1:29677684-29677703 Msa0017770:intron 15.0%
!! TAAATTGTAAATTGTGTAAA+TGG - chr1_1:29678706-29678725 Msa0017770:five_prime_UTR 15.0%
!!! TCTTTAATTGGATTTTTTTT+GGG + chr1_1:29678739-29678758 None:intergenic 15.0%
!!! ATCTTTAATTGGATTTTTTT+TGG + chr1_1:29678740-29678759 None:intergenic 15.0%
!!! ATATGCTTTGAATTCAATTA+TGG - chr1_1:29668836-29668855 Msa0017770:CDS 20.0%
!!! TGATTTTTATTCACATTACA+AGG - chr1_1:29668951-29668970 Msa0017770:CDS 20.0%
!! TGTTTCTTATAGGAAAAATA+GGG + chr1_1:29669857-29669876 None:intergenic 20.0%
!! AATATAATAATGACACTAAC+TGG + chr1_1:29670240-29670259 None:intergenic 20.0%
!!! TAAACTAACAATGTTTTAGA+AGG + chr1_1:29670672-29670691 None:intergenic 20.0%
!! AAAATTTAATTGCATCACAT+TGG + chr1_1:29671193-29671212 None:intergenic 20.0%
!! TATGGATATATAAATGGTTA+AGG + chr1_1:29671309-29671328 None:intergenic 20.0%
!! AATGGTTATGGATATATAAA+TGG + chr1_1:29671315-29671334 None:intergenic 20.0%
!! ACAAATCTTAATAATGGTTA+TGG + chr1_1:29671327-29671346 None:intergenic 20.0%
!! AAATATGAAAAAACAAAAGG+CGG + chr1_1:29672297-29672316 None:intergenic 20.0%
!! AAAAGAAAAACAAAACTTGT+TGG + chr1_1:29672661-29672680 None:intergenic 20.0%
!!! AGCATACAAATATTTTCAAA+AGG + chr1_1:29672954-29672973 None:intergenic 20.0%
!!! TATGATTTGTAATATGATCA+AGG - chr1_1:29673062-29673081 Msa0017770:intron 20.0%
!!! GAATTTTCATTTTCATGATT+TGG - chr1_1:29673821-29673840 Msa0017770:CDS 20.0%
!! GACATCATAAAAAAAAGTAA+TGG + chr1_1:29674529-29674548 None:intergenic 20.0%
!! TTTATTATCTAATGAAATGC+AGG - chr1_1:29674597-29674616 Msa0017770:CDS 20.0%
!!! ACATTTTTTAACCAAAAACA+TGG - chr1_1:29675088-29675107 Msa0017770:intron 20.0%
!!! AAAAGCATATTCATCTTATT+TGG - chr1_1:29675659-29675678 Msa0017770:intron 20.0%
!!! AAAGCATATTCATCTTATTT+GGG - chr1_1:29675660-29675679 Msa0017770:intron 20.0%
!! GAAAAAATAGATCAATAAGA+AGG + chr1_1:29676596-29676615 None:intergenic 20.0%
!! TATAAGATGTGAAGATAAAA+TGG - chr1_1:29676892-29676911 Msa0017770:CDS 20.0%
!! ATAAGATGTGAAGATAAAAT+GGG - chr1_1:29676893-29676912 Msa0017770:CDS 20.0%
!! CCCTTAATATCTAATAAATT+TGG - chr1_1:29677032-29677051 Msa0017770:CDS 20.0%
!! TTACATAAAAAAGTGAGAAA+TGG + chr1_1:29677088-29677107 None:intergenic 20.0%
!! GATTTAAGTGATTAAGTTAT+TGG - chr1_1:29677113-29677132 Msa0017770:exon 20.0%
!! TTTAAGTGATTAAGTTATTG+GGG - chr1_1:29677115-29677134 Msa0017770:exon 20.0%
!! AAATGAAACTGGTATAATAT+AGG - chr1_1:29677501-29677520 Msa0017770:intron 20.0%
!! ATATAGGAATTATTAAAGGA+TGG - chr1_1:29677517-29677536 Msa0017770:intron 20.0%
!!! TAAAGGATATTTTACACTTT+TGG - chr1_1:29677578-29677597 Msa0017770:intron 20.0%
!!! TGTATCTTCTATTTTTATCA+AGG - chr1_1:29677651-29677670 Msa0017770:intron 20.0%
!! CATATTTGAGAATTAGAAAA+TGG - chr1_1:29677683-29677702 Msa0017770:intron 20.0%
!!! TTTAATTGGATTTTTTTTGG+GGG + chr1_1:29678737-29678756 None:intergenic 20.0%
!!! CTTTAATTGGATTTTTTTTG+GGG + chr1_1:29678738-29678757 None:intergenic 20.0%
! GTGACTAAATGATTATACTT+TGG - chr1_1:29668897-29668916 Msa0017770:CDS 25.0%
!! TTTTTATTCACATTACAAGG+TGG - chr1_1:29668954-29668973 Msa0017770:CDS 25.0%
! AAGAGAAATAAATAGTGGTT+AGG - chr1_1:29668981-29669000 Msa0017770:intron 25.0%
! CGAACAAATTCAAAAACTTA+GGG - chr1_1:29669012-29669031 Msa0017770:intron 25.0%
!!! AAACTTAGGGTTTTTGATTT+TGG - chr1_1:29669025-29669044 Msa0017770:intron 25.0%
!!! GTTTTGTTCAATTTTCTTCA+CGG - chr1_1:29669471-29669490 Msa0017770:CDS 25.0%
!! CTCAAAATGTTCAATTTTGT+TGG + chr1_1:29669712-29669731 None:intergenic 25.0%
! GTGTTTCTTATAGGAAAAAT+AGG + chr1_1:29669858-29669877 None:intergenic 25.0%
!! AAATAATCCATAACTTGCAT+TGG - chr1_1:29670182-29670201 Msa0017770:CDS 25.0%
!! AATAATCCATAACTTGCATT+GGG - chr1_1:29670183-29670202 Msa0017770:CDS 25.0%
! TTTGTCAAGTTTCATAGTAT+AGG - chr1_1:29670350-29670369 Msa0017770:intron 25.0%
! TTGTCAAGTTTCATAGTATA+GGG - chr1_1:29670351-29670370 Msa0017770:intron 25.0%
! ATTTCTAATACCTAGATAAG+TGG - chr1_1:29670801-29670820 Msa0017770:intron 25.0%
!!! TCATTATTGATGATGAAACA+AGG + chr1_1:29671032-29671051 None:intergenic 25.0%
! TCAATAATGATTTCTCATGA+AGG - chr1_1:29671042-29671061 Msa0017770:CDS 25.0%
!! TTGATTGCATATTTTTCTCT+TGG - chr1_1:29671147-29671166 Msa0017770:intron 25.0%
! ATGCAGAAAATCATCATTAT+TGG + chr1_1:29671265-29671284 None:intergenic 25.0%
!! AAAGATTATTTCTTACAAGG+TGG + chr1_1:29672076-29672095 None:intergenic 25.0%
!! CAGAAAGATTATTTCTTACA+AGG + chr1_1:29672079-29672098 None:intergenic 25.0%
!!! GCCTTTTGTTTTTTCATATT+TGG - chr1_1:29672296-29672315 Msa0017770:intron 25.0%
! GCCAAATATGAAAAAACAAA+AGG + chr1_1:29672300-29672319 None:intergenic 25.0%
! GCATAATAAACTCCAAATAA+GGG + chr1_1:29672358-29672377 None:intergenic 25.0%
! AGCATAATAAACTCCAAATA+AGG + chr1_1:29672359-29672378 None:intergenic 25.0%
! AATTAAAGTTACTATAGACC+AGG - chr1_1:29672431-29672450 Msa0017770:intron 25.0%
! ATTAAAGTTACTATAGACCA+GGG - chr1_1:29672432-29672451 Msa0017770:intron 25.0%
!! TATTTCTTCTTTTGTATGTC+AGG - chr1_1:29672537-29672556 Msa0017770:CDS 25.0%
! GTTGGTTATTATGCTAAAAT+AGG + chr1_1:29672643-29672662 None:intergenic 25.0%
!! GACTAGTCATATTTAAGAAT+TGG + chr1_1:29672690-29672709 None:intergenic 25.0%
!! CTTAAATATGACTAGTCAAT+TGG - chr1_1:29672693-29672712 Msa0017770:CDS 25.0%
! ATAGTAAAATGACTTAGACT+TGG + chr1_1:29672783-29672802 None:intergenic 25.0%
!! TTTTCTTTTTGTTCAAGCTA+TGG - chr1_1:29672996-29673015 Msa0017770:intron 25.0%
!! TTTCTTTTTGTTCAAGCTAT+GGG - chr1_1:29672997-29673016 Msa0017770:intron 25.0%
! ACTGTAAAGATTAATCTCTT+AGG - chr1_1:29673213-29673232 Msa0017770:intron 25.0%
! TAAAGATTAATCTCTTAGGT+CGG - chr1_1:29673217-29673236 Msa0017770:intron 25.0%
!!! TATTTGATTTTTGTGTAACG+TGG - chr1_1:29673973-29673992 Msa0017770:intron 25.0%
! TTATGAGCTCATTCATTTAA+TGG - chr1_1:29674089-29674108 Msa0017770:intron 25.0%
! ATTTAATGGAAGTGATTCTT+TGG - chr1_1:29674103-29674122 Msa0017770:intron 25.0%
! GAGTTAGAAATGAAATTGTT+AGG + chr1_1:29674131-29674150 None:intergenic 25.0%
! GTTCTATCATAAACCAAATT+TGG + chr1_1:29674414-29674433 None:intergenic 25.0%
! TTATGATGTCTCAACTTAAT+AGG - chr1_1:29674539-29674558 Msa0017770:intron 25.0%
!! ACTAATTTATGCTTCAAGTT+TGG - chr1_1:29674699-29674718 Msa0017770:CDS 25.0%
!!! CTTTTGTGTTCTTTAAAAGT+CGG - chr1_1:29674748-29674767 Msa0017770:CDS 25.0%
! AAACATCAAATCCTATGTTA+TGG - chr1_1:29674802-29674821 Msa0017770:intron 25.0%
! AACATCAAATCCTATGTTAT+GGG - chr1_1:29674803-29674822 Msa0017770:intron 25.0%
!! TGCATTTTTATATGCTACAT+AGG - chr1_1:29675160-29675179 Msa0017770:intron 25.0%
!! TAATATGACAATTAGCTTCA+CGG - chr1_1:29675471-29675490 Msa0017770:intron 25.0%
! GATATATAAACACAAAACGT+TGG + chr1_1:29675533-29675552 None:intergenic 25.0%
!! AAGCATATTCATCTTATTTG+GGG - chr1_1:29675661-29675680 Msa0017770:intron 25.0%
! TAACTTTCAAATTAGATTGG+AGG - chr1_1:29675695-29675714 Msa0017770:CDS 25.0%
! TTACCATATTAAATCAGACA+TGG - chr1_1:29675760-29675779 Msa0017770:CDS 25.0%
! ATTCCATGTCTGATTTAATA+TGG + chr1_1:29675766-29675785 None:intergenic 25.0%
! ATTAAATCAGACATGGAATA+TGG - chr1_1:29675767-29675786 Msa0017770:CDS 25.0%
! AATAAAACCAATATCACACT+TGG + chr1_1:29675906-29675925 None:intergenic 25.0%
!!! TGATTAACTAGGTTTTTTCA+TGG - chr1_1:29676337-29676356 Msa0017770:intron 25.0%
! TGGAATAGATTGTATAAAAG+AGG + chr1_1:29676442-29676461 None:intergenic 25.0%
! TATTACTGTTTGGATTTCTT+GGG - chr1_1:29676536-29676555 Msa0017770:intron 25.0%
! TAATAATACTAACCTGGTTT+CGG + chr1_1:29676636-29676655 None:intergenic 25.0%
! ATGTGATAATAATACTAACC+TGG + chr1_1:29676642-29676661 None:intergenic 25.0%
!! ATGTTTCTCTTCTCTTTTTA+TGG - chr1_1:29676660-29676679 Msa0017770:intron 25.0%
! TAAGATGTGAAGATAAAATG+GGG - chr1_1:29676894-29676913 Msa0017770:CDS 25.0%
!!! TTTATTTTTGAGAGAATGGT+GGG - chr1_1:29677156-29677175 Msa0017770:five_prime_UTR 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG + chr1_1:29677318-29677337 None:intergenic 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr1_1:29677365-29677384 None:intergenic 25.0%
!!! TTTGTTTTGACAAATGAAAC+TGG - chr1_1:29677490-29677509 Msa0017770:intron 25.0%
! GTGTAAAATATCCTTTACTA+AGG + chr1_1:29677575-29677594 None:intergenic 25.0%
! TACATTACAAAATACGATAG+TGG - chr1_1:29677956-29677975 Msa0017770:intron 25.0%
! ACATTACAAAATACGATAGT+GGG - chr1_1:29677957-29677976 Msa0017770:intron 25.0%
!!! GTTTTAGATTCTTATTGACT+TGG - chr1_1:29678241-29678260 Msa0017770:intron 25.0%
!! AAGGTTTGTTTGCTTTATAA+TGG - chr1_1:29678417-29678436 Msa0017770:five_prime_UTR 25.0%
!!! ATGTTTGCTTTTCATTTTTC+AGG - chr1_1:29678480-29678499 Msa0017770:five_prime_UTR 25.0%
! ATTCTTATTCAATGTACAAG+CGG + chr1_1:29678601-29678620 None:intergenic 25.0%
! CATGAACATCTAATTAAAGA+TGG - chr1_1:29678645-29678664 Msa0017770:five_prime_UTR 25.0%
!!! TTAATTGGATTTTTTTTGGG+GGG + chr1_1:29678736-29678755 None:intergenic 25.0%
! GTTATCTGTCTATCTTTAAT+TGG + chr1_1:29678751-29678770 None:intergenic 25.0%
!! AATGCACAACATTTTTATTC+TGG + chr1_1:29678795-29678814 None:intergenic 25.0%
GATGAAAGAGAAAAATAAGC+GGG + chr1_1:29668717-29668736 None:intergenic 30.0%
CGATGAAAGAGAAAAATAAG+CGG + chr1_1:29668718-29668737 None:intergenic 30.0%
GTGTGAAGAGAAATAAATAG+TGG - chr1_1:29668976-29668995 Msa0017770:CDS 30.0%
GCGAACAAATTCAAAAACTT+AGG - chr1_1:29669011-29669030 Msa0017770:intron 30.0%
!!! TTCAACTACTCTTTTGGTTT+TGG - chr1_1:29669193-29669212 Msa0017770:CDS 30.0%
!! GTTTTTCAAATTCCGATTGA+AGG - chr1_1:29669506-29669525 Msa0017770:CDS 30.0%
TCAATGTATTGTGTAAGTGT+CGG + chr1_1:29669582-29669601 None:intergenic 30.0%
!! TTGAACATTTTGAGTGTGTT+TGG - chr1_1:29669718-29669737 Msa0017770:intron 30.0%
!! TGAACATTTTGAGTGTGTTT+GGG - chr1_1:29669719-29669738 Msa0017770:intron 30.0%
ATGTTAAGCATGCTATTGAT+TGG - chr1_1:29670078-29670097 Msa0017770:intron 30.0%
!!! GACTCAATTTTAACTCTTTC+AGG - chr1_1:29670278-29670297 Msa0017770:CDS 30.0%
!!! ATTTTAACTCTTTCAGGTGA+TGG - chr1_1:29670284-29670303 Msa0017770:CDS 30.0%
GACAAATATCATAAACGATG+AGG + chr1_1:29670336-29670355 None:intergenic 30.0%
AATTAATATCGTTGTGTGTG+TGG - chr1_1:29670413-29670432 Msa0017770:intron 30.0%
AAGTACACATTAACATTGCT+GGG + chr1_1:29670474-29670493 None:intergenic 30.0%
AAAGTACACATTAACATTGC+TGG + chr1_1:29670475-29670494 None:intergenic 30.0%
ATGTTAATGTGTACTTTGCA+CGG - chr1_1:29670478-29670497 Msa0017770:intron 30.0%
! TAGCTGGATATTAAAAGCAT+GGG - chr1_1:29670563-29670582 Msa0017770:intron 30.0%
AACATCTGAGAATGAGATAT+TGG - chr1_1:29670587-29670606 Msa0017770:intron 30.0%
!! TTTCAGGTTAAAGTAAGACT+CGG + chr1_1:29670758-29670777 None:intergenic 30.0%
ATTAGAAATCCTTACATGGT+AGG + chr1_1:29670790-29670809 None:intergenic 30.0%
AGGTATTAGAAATCCTTACA+TGG + chr1_1:29670794-29670813 None:intergenic 30.0%
!!! TTTTTTCAAATTCCACTCTC+TGG - chr1_1:29670855-29670874 Msa0017770:intron 30.0%
TATTCCTGACATGAATTCTT+AGG + chr1_1:29670895-29670914 None:intergenic 30.0%
CATTGACCAGAAAATTTGTA+TGG + chr1_1:29670950-29670969 None:intergenic 30.0%
AATCAAGTGTGCATCTTAAA+TGG + chr1_1:29671133-29671152 None:intergenic 30.0%
GTGAGCACAAATCTTAATAA+TGG + chr1_1:29671333-29671352 None:intergenic 30.0%
ACGCCTAATTGATATAGATA+TGG - chr1_1:29671388-29671407 Msa0017770:CDS 30.0%
CTGCCATATCTATATCAATT+AGG + chr1_1:29671394-29671413 None:intergenic 30.0%
!! CGATTTTGTTTAAGCCTATT+AGG + chr1_1:29671599-29671618 None:intergenic 30.0%
ACTACATAAGCATATACCTT+TGG - chr1_1:29671747-29671766 Msa0017770:intron 30.0%
TGTAAGTGCTAATTATGTGA+TGG - chr1_1:29671844-29671863 Msa0017770:intron 30.0%
TAGTAAACATTACAGATGTG+TGG - chr1_1:29672102-29672121 Msa0017770:intron 30.0%
ACAATGCTCAAAGAAAAATG+TGG - chr1_1:29672250-29672269 Msa0017770:intron 30.0%
TTACTTGAGTTTCCCTTATT+TGG - chr1_1:29672343-29672362 Msa0017770:intron 30.0%
GGTTATTATGCTAAAATAGG+CGG + chr1_1:29672640-29672659 None:intergenic 30.0%
!! GTCAATTGGTGTTTTTGTTT+AGG - chr1_1:29672707-29672726 Msa0017770:CDS 30.0%
CACCAAATGATTTATAAGTG+TGG - chr1_1:29672897-29672916 Msa0017770:intron 30.0%
TGCCACACTTATAAATCATT+TGG + chr1_1:29672902-29672921 None:intergenic 30.0%
! TTCTTTTTGTTCAAGCTATG+GGG - chr1_1:29672998-29673017 Msa0017770:intron 30.0%
TTGAAGTTGAGATAACAACA+TGG - chr1_1:29673088-29673107 Msa0017770:intron 30.0%
AAAGATTAATCTCTTAGGTC+GGG - chr1_1:29673218-29673237 Msa0017770:intron 30.0%
TATTTAAATCTTCTTTCCCC+AGG - chr1_1:29673557-29673576 Msa0017770:intron 30.0%
! CAAGGTACTTAAAGATTCAT+CGG - chr1_1:29673599-29673618 Msa0017770:intron 30.0%
!! TTCCACAGATTCTTTTAAGA+TGG - chr1_1:29673668-29673687 Msa0017770:intron 30.0%
AACCATCTTAAAAGAATCTG+TGG + chr1_1:29673673-29673692 None:intergenic 30.0%
TAAGATGGTTTCTAATGAGA+TGG - chr1_1:29673683-29673702 Msa0017770:intron 30.0%
AAGATGGTTTCTAATGAGAT+GGG - chr1_1:29673684-29673703 Msa0017770:intron 30.0%
ATATATAATCATCGATGGAG+CGG - chr1_1:29674000-29674019 Msa0017770:intron 30.0%
TAATGAATGAGTGATTAAGC+AGG + chr1_1:29674157-29674176 None:intergenic 30.0%
TAAGCTCAGTGTTACAAAAA+TGG + chr1_1:29674188-29674207 None:intergenic 30.0%
ATATATGAACCTGTCATTGT+TGG - chr1_1:29674300-29674319 Msa0017770:intron 30.0%
ACAATTTATCCAACAATGAC+AGG + chr1_1:29674312-29674331 None:intergenic 30.0%
CACTATAGAAAGGATTAGAA+AGG - chr1_1:29674365-29674384 Msa0017770:intron 30.0%
AAGGATTAGAAAGGATTTAG+AGG - chr1_1:29674374-29674393 Msa0017770:intron 30.0%
! TAATGAGTTGGATCCAAATT+TGG - chr1_1:29674398-29674417 Msa0017770:intron 30.0%
TGGTTTATGATAGAACACTA+TGG - chr1_1:29674418-29674437 Msa0017770:intron 30.0%
! TCAGAAAATGTTTCCTTTTC+TGG - chr1_1:29674995-29675014 Msa0017770:intron 30.0%
TTTAACCAAAAACATGGATC+AGG - chr1_1:29675094-29675113 Msa0017770:intron 30.0%
TGTATGTAGAGCTTCTTTAT+AGG - chr1_1:29675200-29675219 Msa0017770:intron 30.0%
! ACTAGTTTATGATTTGTCCA+TGG - chr1_1:29675374-29675393 Msa0017770:intron 30.0%
! CTAGTTTATGATTTGTCCAT+GGG - chr1_1:29675375-29675394 Msa0017770:intron 30.0%
! TAGTTTATGATTTGTCCATG+GGG - chr1_1:29675376-29675395 Msa0017770:intron 30.0%
! ATTTTGCTTTGTAATCCCAA+TGG - chr1_1:29675418-29675437 Msa0017770:intron 30.0%
AGATTCTAACTTTGTCCATT+GGG + chr1_1:29675436-29675455 None:intergenic 30.0%
AAGATTCTAACTTTGTCCAT+TGG + chr1_1:29675437-29675456 None:intergenic 30.0%
TTTCACACCATCATTCAAAT+GGG + chr1_1:29675592-29675611 None:intergenic 30.0%
! TTTTCACACCATCATTCAAA+TGG + chr1_1:29675593-29675612 None:intergenic 30.0%
! AGCATATTCATCTTATTTGG+GGG - chr1_1:29675662-29675681 Msa0017770:intron 30.0%
GTTGAAAATAGCATCATCAA+TGG + chr1_1:29675945-29675964 None:intergenic 30.0%
!!! ATGCTATTTTCAACAGTTGA+GGG - chr1_1:29675951-29675970 Msa0017770:intron 30.0%
!! AAGTTTTGTACTTCACAATC+TGG - chr1_1:29676015-29676034 Msa0017770:intron 30.0%
! TTTAAAGTACACTGTCATCT+AGG + chr1_1:29676165-29676184 None:intergenic 30.0%
ACAAAATGGGTCGAAATAAA+GGG + chr1_1:29676195-29676214 None:intergenic 30.0%
AACAAAATGGGTCGAAATAA+AGG + chr1_1:29676196-29676215 None:intergenic 30.0%
!! ACTCTAGAACAGAACAAAAT+GGG + chr1_1:29676208-29676227 None:intergenic 30.0%
!! TACTCTAGAACAGAACAAAA+TGG + chr1_1:29676209-29676228 None:intergenic 30.0%
! TTACATTTTGTCATCTGGTT+GGG - chr1_1:29676384-29676403 Msa0017770:intron 30.0%
GTTAAGGATGATACACTTAA+TGG - chr1_1:29676478-29676497 Msa0017770:intron 30.0%
CTATTACTGTTTGGATTTCT+TGG - chr1_1:29676535-29676554 Msa0017770:intron 30.0%
!! TTTAGGAATTAAGGGGTATT+TGG - chr1_1:29676767-29676786 Msa0017770:intron 30.0%
ATGTTTCCATAAGCTATCTT+AGG - chr1_1:29676943-29676962 Msa0017770:CDS 30.0%
TGTTTCCATAAGCTATCTTA+GGG - chr1_1:29676944-29676963 Msa0017770:CDS 30.0%
!!! AGGGTTTATTTTTGAGAGAA+TGG - chr1_1:29677152-29677171 Msa0017770:five_prime_UTR 30.0%
!!! GTTTATTTTTGAGAGAATGG+TGG - chr1_1:29677155-29677174 Msa0017770:five_prime_UTR 30.0%
!!! TTATTTTTGAGAGAATGGTG+GGG - chr1_1:29677157-29677176 Msa0017770:five_prime_UTR 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr1_1:29677249-29677268 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr1_1:29677250-29677269 Msa0017770:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr1_1:29677308-29677327 None:intergenic 30.0%
AACCATTAGAAAAGACTTAG+AGG - chr1_1:29677325-29677344 Msa0017770:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr1_1:29677369-29677388 Msa0017770:intron 30.0%
TTATTAAAGGATGGTGAAAC+TGG - chr1_1:29677526-29677545 Msa0017770:intron 30.0%
!! TTTTACACTTTTGGCTGAAA+TGG - chr1_1:29677587-29677606 Msa0017770:intron 30.0%
TCTTATTCTTTCTTGTCAGA+TGG - chr1_1:29677731-29677750 Msa0017770:intron 30.0%
!!! ATCACGTTTTATTTGTTGCT+AGG - chr1_1:29677800-29677819 Msa0017770:intron 30.0%
CATTCATTTAATGACACAGA+AGG + chr1_1:29677860-29677879 None:intergenic 30.0%
!! ACACGTTGATAATCTGAAAA+GGG + chr1_1:29677937-29677956 None:intergenic 30.0%
!! TACACGTTGATAATCTGAAA+AGG + chr1_1:29677938-29677957 None:intergenic 30.0%
CATTACAAAATACGATAGTG+GGG - chr1_1:29677958-29677977 Msa0017770:intron 30.0%
! ATTACAAAATACGATAGTGG+GGG - chr1_1:29677959-29677978 Msa0017770:intron 30.0%
CTGAATTGCTTCTAAATACT+GGG + chr1_1:29678153-29678172 None:intergenic 30.0%
! CAGAATTTAGTTTAAAGCTG+TGG + chr1_1:29678218-29678237 None:intergenic 30.0%
GATAAGAAAGATGAACAATG+TGG - chr1_1:29678263-29678282 Msa0017770:five_prime_UTR 30.0%
GATTTATGAACAATTGCGTT+CGG - chr1_1:29678298-29678317 Msa0017770:five_prime_UTR 30.0%
TGTTTGCTTTATAATGGTTG+AGG - chr1_1:29678423-29678442 Msa0017770:five_prime_UTR 30.0%
TTCTTATTCAATGTACAAGC+GGG + chr1_1:29678600-29678619 None:intergenic 30.0%
TTAATTAGATGTTCATGCAC+TGG + chr1_1:29678642-29678661 None:intergenic 30.0%
! TTGAAAATTGATAGCTGAAG+TGG - chr1_1:29678827-29678846 Msa0017770:five_prime_UTR 30.0%
AAAGAGAAAAATAAGCGGGA+GGG + chr1_1:29668713-29668732 None:intergenic 35.0%
GCAAAACAAAGAAGAAAGTG+AGG + chr1_1:29669151-29669170 None:intergenic 35.0%
! CGCTTATTCAACTACTCTTT+TGG - chr1_1:29669187-29669206 Msa0017770:CDS 35.0%
AAGAAAAATGTACCAGTGCA+CGG + chr1_1:29669247-29669266 None:intergenic 35.0%
! TCGTTTTCTTCAATTCTGCT+TGG - chr1_1:29669275-29669294 Msa0017770:intron 35.0%
TTTCTTCACGGAAACTAAGT+AGG - chr1_1:29669483-29669502 Msa0017770:CDS 35.0%
TTCTTCACGGAAACTAAGTA+GGG - chr1_1:29669484-29669503 Msa0017770:CDS 35.0%
CAATTATAAAGCACAGACAC+AGG + chr1_1:29669661-29669680 None:intergenic 35.0%
CTTAACAAAGGAAGAGGAAA+AGG + chr1_1:29669797-29669816 None:intergenic 35.0%
ACAAGTGCATGACTTAACAA+AGG + chr1_1:29669809-29669828 None:intergenic 35.0%
!! ACTTGTTGTAAATCCCTGTA+TGG - chr1_1:29669823-29669842 Msa0017770:intron 35.0%
GAACTTTCTTTATCATCCAG+AGG + chr1_1:29669912-29669931 None:intergenic 35.0%
! TGCTATTGATTGGTATCTGT+TGG - chr1_1:29670088-29670107 Msa0017770:intron 35.0%
! CTTGATGCTAAGTAGCTTTT+TGG - chr1_1:29670137-29670156 Msa0017770:CDS 35.0%
!! ATTCTAGACACGTTGATTTC+TGG - chr1_1:29670517-29670536 Msa0017770:intron 35.0%
TTTAATATCCAGCTAGGAGA+GGG + chr1_1:29670558-29670577 None:intergenic 35.0%
! TTTTAATATCCAGCTAGGAG+AGG + chr1_1:29670559-29670578 None:intergenic 35.0%
! CATGCTTTTAATATCCAGCT+AGG + chr1_1:29670564-29670583 None:intergenic 35.0%
CTAGCTGGATATTAAAAGCA+TGG - chr1_1:29670562-29670581 Msa0017770:intron 35.0%
! GAGAATGAGATATTGGCTAT+TGG - chr1_1:29670594-29670613 Msa0017770:intron 35.0%
! AATGAGATATTGGCTATTGG+TGG - chr1_1:29670597-29670616 Msa0017770:intron 35.0%
! TGGATGCTGTAGTTTTTGTA+AGG - chr1_1:29670622-29670641 Msa0017770:intron 35.0%
TGGTAGGTTTAGTAGATTTC+AGG + chr1_1:29670774-29670793 None:intergenic 35.0%
TCTACTAAACCTACCATGTA+AGG - chr1_1:29670778-29670797 Msa0017770:intron 35.0%
ATCTTCACTTCCACTTATCT+AGG + chr1_1:29670814-29670833 None:intergenic 35.0%
! CATGCACCATACAAATTTTC+TGG - chr1_1:29670941-29670960 Msa0017770:CDS 35.0%
!! ATTGATGATGAAACAAGGCA+AGG + chr1_1:29671027-29671046 None:intergenic 35.0%
! ATGAAGGTCAATCTTTTGAG+TGG - chr1_1:29671058-29671077 Msa0017770:CDS 35.0%
TTCAATGTTTGTCTTCCCTT+TGG + chr1_1:29671089-29671108 None:intergenic 35.0%
GGGAAGACAAACATTGAAAT+TGG - chr1_1:29671091-29671110 Msa0017770:CDS 35.0%
GACAAACATTGAAATTGGCT+TGG - chr1_1:29671096-29671115 Msa0017770:CDS 35.0%
TTGCATTGTTGTACTCTGTA+TGG - chr1_1:29671456-29671475 Msa0017770:CDS 35.0%
AAAACCAAGGCAAGTAACAA+AGG + chr1_1:29671516-29671535 None:intergenic 35.0%
AACCAAACACAGTAAAACCA+AGG + chr1_1:29671529-29671548 None:intergenic 35.0%
AAAATCGATTGTCCATCTTG+AGG - chr1_1:29671612-29671631 Msa0017770:CDS 35.0%
GGAAAAAACTCGAATACTGT+GGG + chr1_1:29671668-29671687 None:intergenic 35.0%
TGGAAAAAACTCGAATACTG+TGG + chr1_1:29671669-29671688 None:intergenic 35.0%
!!! ATTCGAGTTTTTTCCATCAC+TGG - chr1_1:29671673-29671692 Msa0017770:intron 35.0%
GTGCTTCCTGTGAATTATTA+CGG - chr1_1:29671715-29671734 Msa0017770:intron 35.0%
CCTTTACCGTAATAATTCAC+AGG + chr1_1:29671724-29671743 None:intergenic 35.0%
CCTGTGAATTATTACGGTAA+AGG - chr1_1:29671721-29671740 Msa0017770:intron 35.0%
ATGTCGAAGAAGGTTCAAAA+TGG - chr1_1:29671797-29671816 Msa0017770:intron 35.0%
! AATTCAGCTTTGTGAGATGT+GGG + chr1_1:29671983-29672002 None:intergenic 35.0%
!!! ATTTTGAGTTATTCAGCCTC+CGG + chr1_1:29672012-29672031 None:intergenic 35.0%
TTCTTACAAGGTGGATATGT+TGG + chr1_1:29672067-29672086 None:intergenic 35.0%
TAGTATGTACAAGCTGAGAA+AGG - chr1_1:29672183-29672202 Msa0017770:intron 35.0%
TAAATATAGTAGAACGACCC+TGG + chr1_1:29672452-29672471 None:intergenic 35.0%
! TTCTTTTGTATGTCAGGCTT+TGG - chr1_1:29672543-29672562 Msa0017770:CDS 35.0%
! TCTTTTGTATGTCAGGCTTT+GGG - chr1_1:29672544-29672563 Msa0017770:CDS 35.0%
GAAAGCTCCTTACAAAGTAA+AGG + chr1_1:29672616-29672635 None:intergenic 35.0%
!! ACAAGAGCATTACTAAGTTG+AGG - chr1_1:29672733-29672752 Msa0017770:CDS 35.0%
TTGAGGCTACTACATATTAC+TGG - chr1_1:29672750-29672769 Msa0017770:intron 35.0%
GTAAAATGACTTAGACTTGG+AGG + chr1_1:29672780-29672799 None:intergenic 35.0%
TTATAGACCAGGGAATTGAT+CGG + chr1_1:29672812-29672831 None:intergenic 35.0%
TATGATTCGCTTATAGACCA+GGG + chr1_1:29672822-29672841 None:intergenic 35.0%
! AATCATTTGGTGAGACAGAT+AGG + chr1_1:29672889-29672908 None:intergenic 35.0%
TTAATCTTTACAGTTGCACG+TGG + chr1_1:29673207-29673226 None:intergenic 35.0%
CAACGTTAAAACTCTTGAGA+GGG + chr1_1:29673268-29673287 None:intergenic 35.0%
ACAACGTTAAAACTCTTGAG+AGG + chr1_1:29673269-29673288 None:intergenic 35.0%
ATAATCAAAGCCCAAAACCA+GGG + chr1_1:29673410-29673429 None:intergenic 35.0%
TGACATAGATACGAGGAAAA+GGG - chr1_1:29673734-29673753 Msa0017770:intron 35.0%
! TGATTTTTGTGTAACGTGGA+CGG - chr1_1:29673977-29673996 Msa0017770:intron 35.0%
GACGGATATATAATCATCGA+TGG - chr1_1:29673995-29674014 Msa0017770:intron 35.0%
ATTCTTAGACCTGTACCTAA+TGG - chr1_1:29674054-29674073 Msa0017770:intron 35.0%
AATATGAAACCTGTCAAGTG+AGG + chr1_1:29674246-29674265 None:intergenic 35.0%
TATGTGGCTAATACACAAGA+CGG + chr1_1:29674283-29674302 None:intergenic 35.0%
CAATGACAGGTTCATATATG+TGG + chr1_1:29674299-29674318 None:intergenic 35.0%
TTTGCACTAGCACTATAGAA+AGG - chr1_1:29674355-29674374 Msa0017770:intron 35.0%
GGATTTAGAGGTTAATGAGT+TGG - chr1_1:29674386-29674405 Msa0017770:intron 35.0%
TAAAGAACACAAAAGCAGCT+GGG + chr1_1:29674743-29674762 None:intergenic 35.0%
TTAAAGAACACAAAAGCAGC+TGG + chr1_1:29674744-29674763 None:intergenic 35.0%
GTGTACCATATAGGCAAATT+TGG - chr1_1:29674874-29674893 Msa0017770:intron 35.0%
CAGAAAATGTAGCCATCTTA+CGG + chr1_1:29674902-29674921 None:intergenic 35.0%
!! AAAATGTTTCCTTTTCTGGC+AGG - chr1_1:29674999-29675018 Msa0017770:intron 35.0%
!! AAATGTTTCCTTTTCTGGCA+GGG - chr1_1:29675000-29675019 Msa0017770:intron 35.0%
!! AAGGCGTTTTTGCATCTATT+AGG - chr1_1:29675036-29675055 Msa0017770:intron 35.0%
! AAAGTCCTGATCCATGTTTT+TGG + chr1_1:29675102-29675121 None:intergenic 35.0%
GTAGAGCTTCTTTATAGGTA+TGG - chr1_1:29675205-29675224 Msa0017770:intron 35.0%
!! TATTGTAAACAGGTTTGGTG+GGG + chr1_1:29675629-29675648 None:intergenic 35.0%
! CTATTGTAAACAGGTTTGGT+GGG + chr1_1:29675630-29675649 None:intergenic 35.0%
TCTATTGTAAACAGGTTTGG+TGG + chr1_1:29675631-29675650 None:intergenic 35.0%
CAGTCTATTGTAAACAGGTT+TGG + chr1_1:29675634-29675653 None:intergenic 35.0%
CACTTCAGTCTATTGTAAAC+AGG + chr1_1:29675639-29675658 None:intergenic 35.0%
! ATATTCATCTTATTTGGGGG+AGG - chr1_1:29675665-29675684 Msa0017770:intron 35.0%
TTACCTACCAAGTGTGATAT+TGG - chr1_1:29675896-29675915 Msa0017770:intron 35.0%
AAACCAATATCACACTTGGT+AGG + chr1_1:29675902-29675921 None:intergenic 35.0%
GAAAATAGCATCATCAATGG+TGG + chr1_1:29675942-29675961 None:intergenic 35.0%
!!! GATGCTATTTTCAACAGTTG+AGG - chr1_1:29675950-29675969 Msa0017770:intron 35.0%
TCTGTGATTCGTGATTAACT+AGG - chr1_1:29676326-29676345 Msa0017770:intron 35.0%
!!! TAGGTTTTTTCATGGTATGC+AGG - chr1_1:29676345-29676364 Msa0017770:intron 35.0%
!!! AGGTTTTTTCATGGTATGCA+GGG - chr1_1:29676346-29676365 Msa0017770:intron 35.0%
CAAAATGTAAGTCGTGAAGA+AGG + chr1_1:29676374-29676393 None:intergenic 35.0%
! ACGACTTACATTTTGTCATC+TGG - chr1_1:29676379-29676398 Msa0017770:intron 35.0%
! CTTACATTTTGTCATCTGGT+TGG - chr1_1:29676383-29676402 Msa0017770:intron 35.0%
AATCCAAACAGTAATAGCCT+AGG + chr1_1:29676532-29676551 None:intergenic 35.0%
!! AATAAGAAGGGAAGCATTAG+AGG + chr1_1:29676583-29676602 None:intergenic 35.0%
TTCGGTAAACAAGATAAGCA+AGG + chr1_1:29676618-29676637 None:intergenic 35.0%
! TTATCTTGTTTACCGAAACC+AGG - chr1_1:29676621-29676640 Msa0017770:intron 35.0%
AAACTCCCTAAGATAGCTTA+TGG + chr1_1:29676952-29676971 None:intergenic 35.0%
GATTAAGTTATTGGGGAGTA+AGG - chr1_1:29677122-29677141 Msa0017770:five_prime_UTR 35.0%
AGCATTCTCTGACAGAAAAT+AGG - chr1_1:29677183-29677202 Msa0017770:intron 35.0%
TGACAGAAAATAGGCTTAGA+TGG - chr1_1:29677192-29677211 Msa0017770:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1_1:29677197-29677216 Msa0017770:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr1_1:29677253-29677272 Msa0017770:intron 35.0%
! GACCTCTAAGTCTTTTCTAA+TGG + chr1_1:29677330-29677349 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1_1:29677349-29677368 Msa0017770:intron 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - chr1_1:29677439-29677458 Msa0017770:intron 35.0%
! TTGTTGTTGTTGTTGTTGGT+GGG - chr1_1:29677446-29677465 Msa0017770:intron 35.0%
CTCTCAATGAACCTTAGTAA+AGG - chr1_1:29677561-29677580 Msa0017770:intron 35.0%
GAAGAATGTGTCATGTATTC+TGG + chr1_1:29677838-29677857 None:intergenic 35.0%
AATAAATCCAGCTGAAACTG+TGG + chr1_1:29678074-29678093 None:intergenic 35.0%
AGAATGGTAACAATGAGCAA+GGG + chr1_1:29678100-29678119 None:intergenic 35.0%
AAGAATGGTAACAATGAGCA+AGG + chr1_1:29678101-29678120 None:intergenic 35.0%
!! ACAGTACTGGTGAAAAAGAA+TGG + chr1_1:29678116-29678135 None:intergenic 35.0%
!! TTCTTTTTCACCAGTACTGT+AGG - chr1_1:29678116-29678135 Msa0017770:intron 35.0%
GCTGAATTGCTTCTAAATAC+TGG + chr1_1:29678154-29678173 None:intergenic 35.0%
ATTTAGAAGCAATTCAGCAC+AGG - chr1_1:29678156-29678175 Msa0017770:intron 35.0%
AAGCTGTGGATGAAAAACTA+AGG + chr1_1:29678204-29678223 None:intergenic 35.0%
AGATGAACAATGTGGAAAGA+TGG - chr1_1:29678271-29678290 Msa0017770:five_prime_UTR 35.0%
ACTTCAGAAGATATCGAGAA+AGG - chr1_1:29678398-29678417 Msa0017770:five_prime_UTR 35.0%
! TGGTTGAGGTTTCAATTTTC+TGG - chr1_1:29678437-29678456 Msa0017770:five_prime_UTR 35.0%
! GGTTGAGGTTTCAATTTTCT+GGG - chr1_1:29678438-29678457 Msa0017770:five_prime_UTR 35.0%
TCTGGGCAATGTTTATAACT+TGG - chr1_1:29678455-29678474 Msa0017770:five_prime_UTR 35.0%
!! AGTACCGATATATCCAAAGT+CGG + chr1_1:29678555-29678574 None:intergenic 35.0%
ACTTTGGATATATCGGTACT+TGG - chr1_1:29678555-29678574 Msa0017770:five_prime_UTR 35.0%
TATGCTTACACACTTGTGGT+TGG - chr1_1:29668656-29668675 Msa0017770:three_prime_UTR 40.0%
GAAAGAGAAAAATAAGCGGG+AGG + chr1_1:29668714-29668733 None:intergenic 40.0%
! ATTCCGATTGAAGGTGTGTT+TGG - chr1_1:29669515-29669534 Msa0017770:CDS 40.0%
ACACCAAACACACCTTCAAT+CGG + chr1_1:29669521-29669540 None:intergenic 40.0%
GACACTATTGTGTAAGTGTC+GGG + chr1_1:29669560-29669579 None:intergenic 40.0%
GGACACTATTGTGTAAGTGT+CGG + chr1_1:29669561-29669580 None:intergenic 40.0%
GCATGACTTAACAAAGGAAG+AGG + chr1_1:29669803-29669822 None:intergenic 40.0%
TGTAAATCCCTGTATGGAGT+TGG - chr1_1:29669829-29669848 Msa0017770:intron 40.0%
TCCTATAAGAAACACACACG+TGG - chr1_1:29669863-29669882 Msa0017770:intron 40.0%
TCCACGTGTGTGTTTCTTAT+AGG + chr1_1:29669867-29669886 None:intergenic 40.0%
CCATAACCCAATGCAAGTTA+TGG + chr1_1:29670192-29670211 None:intergenic 40.0%
! CCATAACTTGCATTGGGTTA+TGG - chr1_1:29670189-29670208 Msa0017770:CDS 40.0%
! TTCAGGTGATGGTCATGATT+TGG - chr1_1:29670295-29670314 Msa0017770:CDS 40.0%
GTTTCATAGTATAGGGAGCA+AGG - chr1_1:29670358-29670377 Msa0017770:intron 40.0%
!!! GTTGCTCTTTTAACTTCTGC+TGG - chr1_1:29670390-29670409 Msa0017770:intron 40.0%
TTAATGTGTACTTTGCACGG+AGG - chr1_1:29670481-29670500 Msa0017770:intron 40.0%
TTGTAAGGATAGTCGTGTTC+AGG - chr1_1:29670637-29670656 Msa0017770:intron 40.0%
!! TTTTGAGTGGTTGTGCCAAA+GGG - chr1_1:29671071-29671090 Msa0017770:CDS 40.0%
TGCTTTGATCTCATGATCTG+TGG - chr1_1:29671214-29671233 Msa0017770:intron 40.0%
! TCAACCTTTGTTACTTGCCT+TGG - chr1_1:29671509-29671528 Msa0017770:CDS 40.0%
!!! TGCCTTGGTTTTACTGTGTT+TGG - chr1_1:29671524-29671543 Msa0017770:CDS 40.0%
AATACATCCAGTGACTCCAA+AGG + chr1_1:29671766-29671785 None:intergenic 40.0%
ACCATTGAGAATGTCGAAGA+AGG - chr1_1:29671787-29671806 Msa0017770:intron 40.0%
ACCTTCTTCGACATTCTCAA+TGG + chr1_1:29671791-29671810 None:intergenic 40.0%
! CCTTTTTATGCTGAAGCTAC+AGG + chr1_1:29671895-29671914 None:intergenic 40.0%
CCTGTAGCTTCAGCATAAAA+AGG - chr1_1:29671892-29671911 Msa0017770:intron 40.0%
! GAATTCAGCTTTGTGAGATG+TGG + chr1_1:29671984-29672003 None:intergenic 40.0%
ATATGTTGGAGGGAATCATG+GGG + chr1_1:29672053-29672072 None:intergenic 40.0%
GATATGTTGGAGGGAATCAT+GGG + chr1_1:29672054-29672073 None:intergenic 40.0%
TACAAGGTGGATATGTTGGA+GGG + chr1_1:29672063-29672082 None:intergenic 40.0%
TTACAAGGTGGATATGTTGG+AGG + chr1_1:29672064-29672083 None:intergenic 40.0%
TGTGTGGCAAATTACTCAGT+TGG - chr1_1:29672118-29672137 Msa0017770:intron 40.0%
ATACTACTGGATCCAAGTGA+GGG + chr1_1:29672169-29672188 None:intergenic 40.0%
TCTCAGCTTGTACATACTAC+TGG + chr1_1:29672182-29672201 None:intergenic 40.0%
AAGCTTACTCGAAGCTTCAT+AGG - chr1_1:29672218-29672237 Msa0017770:intron 40.0%
GGTTCTGCTATGTCCTTTAA+TGG - chr1_1:29672271-29672290 Msa0017770:intron 40.0%
AAACAAAAGGCGGCCATTAA+AGG + chr1_1:29672287-29672306 None:intergenic 40.0%
!!! CATATTTGGCTTTTCCTTCG+TGG - chr1_1:29672310-29672329 Msa0017770:intron 40.0%
! GTAATTTTACTCAGCCACGA+AGG + chr1_1:29672327-29672346 None:intergenic 40.0%
GCACTCTCCTTTACTTTGTA+AGG - chr1_1:29672606-29672625 Msa0017770:CDS 40.0%
GTATGATTCGCTTATAGACC+AGG + chr1_1:29672823-29672842 None:intergenic 40.0%
TGGCAAAGTTCAGAAACTGA+AGG - chr1_1:29672917-29672936 Msa0017770:intron 40.0%
CATAATCAAAGCCCAAAACC+AGG + chr1_1:29673411-29673430 None:intergenic 40.0%
TAAATCTTCTTTCCCCAGGA+CGG - chr1_1:29673561-29673580 Msa0017770:intron 40.0%
GAATTTCCCAAACAGCAACA+TGG + chr1_1:29673651-29673670 None:intergenic 40.0%
CTGACATAGATACGAGGAAA+AGG - chr1_1:29673733-29673752 Msa0017770:intron 40.0%
!!! GGCATTCTTTTGGGTTTGTT+GGG - chr1_1:29674021-29674040 Msa0017770:intron 40.0%
TAAGCAAAGCATGAGCCATT+AGG + chr1_1:29674072-29674091 None:intergenic 40.0%
CACTGAGCTTACATTCTTGT+TGG - chr1_1:29674197-29674216 Msa0017770:intron 40.0%
GTAACGACTCAATGACAACA+AGG + chr1_1:29674633-29674652 None:intergenic 40.0%
CAAGTTTGGATCTCTAATGC+AGG - chr1_1:29674713-29674732 Msa0017770:CDS 40.0%
CCTATATGGTACACGAATGT+TGG + chr1_1:29674868-29674887 None:intergenic 40.0%
CCAACATTCGTGTACCATAT+AGG - chr1_1:29674865-29674884 Msa0017770:intron 40.0%
CGGATCCAAATTTGCCTATA+TGG + chr1_1:29674882-29674901 None:intergenic 40.0%
GCAAATTTGGATCCGTAAGA+TGG - chr1_1:29674887-29674906 Msa0017770:CDS 40.0%
GAAAAGGAACACAAGCATGA+AGG + chr1_1:29674934-29674953 None:intergenic 40.0%
!! AATGTTTCCTTTTCTGGCAG+GGG - chr1_1:29675001-29675020 Msa0017770:intron 40.0%
!! GCAGGGGTACTTAAAAAGTA+AGG - chr1_1:29675017-29675036 Msa0017770:intron 40.0%
TCTATTAGGAACGAACATCG+TGG - chr1_1:29675050-29675069 Msa0017770:intron 40.0%
GTCTTCTCCCATTTGAATGA+TGG - chr1_1:29675582-29675601 Msa0017770:intron 40.0%
! TCTTTTGCAGCCAATATGTG+AGG - chr1_1:29675859-29675878 Msa0017770:intron 40.0%
! GAAGGAAGAAAAGTGCATGT+TGG - chr1_1:29675991-29676010 Msa0017770:intron 40.0%
TATTCCAGAGATTCCTACTC+AGG - chr1_1:29676455-29676474 Msa0017770:intron 40.0%
ATTCCAGAGATTCCTACTCA+GGG - chr1_1:29676456-29676475 Msa0017770:intron 40.0%
TATCATCCTTAACCCTGAGT+AGG + chr1_1:29676471-29676490 None:intergenic 40.0%
CTAGGAACTTCTGTATGGTA+TGG + chr1_1:29676514-29676533 None:intergenic 40.0%
CATACCATACAGAAGTTCCT+AGG - chr1_1:29676512-29676531 Msa0017770:intron 40.0%
ATAGCCTAGGAACTTCTGTA+TGG + chr1_1:29676519-29676538 None:intergenic 40.0%
GTTCCTAGGCTATTACTGTT+TGG - chr1_1:29676526-29676545 Msa0017770:intron 40.0%
AGAGAATCTCCAAGCAAAAC+CGG + chr1_1:29676726-29676745 None:intergenic 40.0%
AGATGAAGACGATGCTAATG+CGG - chr1_1:29676982-29677001 Msa0017770:CDS 40.0%
! TTAGATATTAAGGGGGTGCA+TGG + chr1_1:29677026-29677045 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr1_1:29677240-29677259 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_1:29677278-29677297 Msa0017770:intron 40.0%
AGACTTAGAGGTCAATGAGT+TGG - chr1_1:29677337-29677356 Msa0017770:intron 40.0%
! GTTGTTGTTGTTGTTGTTGG+TGG - chr1_1:29677445-29677464 Msa0017770:intron 40.0%
! TGTTGTTGTTGTTGTTGGTG+GGG - chr1_1:29677447-29677466 Msa0017770:intron 40.0%
GGTGAAACTGGTATAATGCA+TGG - chr1_1:29677538-29677557 Msa0017770:intron 40.0%
GAAATCGTTTCCTACAGTAC+TGG + chr1_1:29678129-29678148 None:intergenic 40.0%
GTCATTAAACAGACTAGACC+AGG - chr1_1:29678507-29678526 Msa0017770:five_prime_UTR 40.0%
GAGTCCGACTTTGGATATAT+CGG - chr1_1:29678548-29678567 Msa0017770:five_prime_UTR 40.0%
TTGGATATATCGGTACTTGG+TGG - chr1_1:29678558-29678577 Msa0017770:five_prime_UTR 40.0%
TAGATGTTCATGCACTGGAT+CGG + chr1_1:29678637-29678656 None:intergenic 40.0%
ATAGCTGAAGTGGCTATTGA+GGG - chr1_1:29678837-29678856 Msa0017770:five_prime_UTR 40.0%
CGGTTATGCTTACACACTTG+TGG - chr1_1:29668652-29668671 Msa0017770:three_prime_UTR 45.0%
AGAAAAATAAGCGGGAGGGA+TGG + chr1_1:29668709-29668728 None:intergenic 45.0%
TCATGATTGGTACGCGATTG+TGG + chr1_1:29668795-29668814 None:intergenic 45.0%
AGAATTCTTCATCCGTGCAC+TGG - chr1_1:29669232-29669251 Msa0017770:CDS 45.0%
CATAGTATAGGGAGCAAGGA+TGG - chr1_1:29670362-29670381 Msa0017770:intron 45.0%
!! TAGACACGTTGATTTCTGGC+TGG - chr1_1:29670521-29670540 Msa0017770:intron 45.0%
! GATATTGGCTATTGGTGGCT+TGG - chr1_1:29670602-29670621 Msa0017770:intron 45.0%
CGCTCCTAAGAATTCATGTC+AGG - chr1_1:29670888-29670907 Msa0017770:CDS 45.0%
!! CTTTTGAGTGGTTGTGCCAA+AGG - chr1_1:29671070-29671089 Msa0017770:CDS 45.0%
!! GCATATACCTTTGGAGTCAC+TGG - chr1_1:29671756-29671775 Msa0017770:intron 45.0%
ACAAAGCTGAATTCCCAAGC+CGG - chr1_1:29671990-29672009 Msa0017770:intron 45.0%
GGATATGTTGGAGGGAATCA+TGG + chr1_1:29672055-29672074 None:intergenic 45.0%
TACTCAGTTGGTCAAGACGT+TGG - chr1_1:29672130-29672149 Msa0017770:intron 45.0%
TACTACTGGATCCAAGTGAG+GGG + chr1_1:29672168-29672187 None:intergenic 45.0%
CATACTACTGGATCCAAGTG+AGG + chr1_1:29672170-29672189 None:intergenic 45.0%
TTACTCGAAGCTTCATAGGC+AGG - chr1_1:29672222-29672241 Msa0017770:intron 45.0%
TTCTTGTCCGATCAATTCCC+TGG - chr1_1:29672802-29672821 Msa0017770:intron 45.0%
ATCTTTACAGTTGCACGTGG+AGG + chr1_1:29673204-29673223 None:intergenic 45.0%
AAATCTTCTTTCCCCAGGAC+GGG - chr1_1:29673562-29673581 Msa0017770:intron 45.0%
TCGGAAAATAGTTGCAAGCC+AGG - chr1_1:29673618-29673637 Msa0017770:intron 45.0%
! TGTTGTGCCATGTTGCTGTT+TGG - chr1_1:29673641-29673660 Msa0017770:intron 45.0%
!! GTTGTGCCATGTTGCTGTTT+GGG - chr1_1:29673642-29673661 Msa0017770:intron 45.0%
GCTACACTGACATAGATACG+AGG - chr1_1:29673727-29673746 Msa0017770:intron 45.0%
!!! CGGCATTCTTTTGGGTTTGT+TGG - chr1_1:29674020-29674039 Msa0017770:intron 45.0%
AAGCATGAGCCATTAGGTAC+AGG + chr1_1:29674066-29674085 None:intergenic 45.0%
GCTCTTCATTGCCCAATGTT+CGG - chr1_1:29674219-29674238 Msa0017770:intron 45.0%
TCAAGTGAGGACCGAACATT+GGG + chr1_1:29674233-29674252 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_1:29674467-29674486 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_1:29674468-29674487 None:intergenic 45.0%
AAGTCGGTATGCTGCTCTTA+TGG - chr1_1:29674764-29674783 Msa0017770:intron 45.0%
ATGTCTGTCGCCCATAACAT+AGG + chr1_1:29674816-29674835 None:intergenic 45.0%
TATGTTATGGGCGACAGACA+TGG - chr1_1:29674815-29674834 Msa0017770:intron 45.0%
! CATGCTTGTGTTCCTTTTCC+CGG - chr1_1:29674935-29674954 Msa0017770:intron 45.0%
! TTGTGTTCCTTTTCCCGGTT+GGG - chr1_1:29674940-29674959 Msa0017770:intron 45.0%
TTAAGTACCCCTGCCAGAAA+AGG + chr1_1:29675011-29675030 None:intergenic 45.0%
ACAACTGACAAGCAGAAGAG+AGG + chr1_1:29675306-29675325 None:intergenic 45.0%
TTTGCAGCCAATATGTGAGG+CGG - chr1_1:29675862-29675881 Msa0017770:intron 45.0%
! ACTTTTCTTCCTTCCACTGC+GGG + chr1_1:29675985-29676004 None:intergenic 45.0%
! CACTTTTCTTCCTTCCACTG+CGG + chr1_1:29675986-29676005 None:intergenic 45.0%
TCTAGATAAACCACCTGAGC+TGG + chr1_1:29676140-29676159 None:intergenic 45.0%
TAACCCTGAGTAGGAATCTC+TGG + chr1_1:29676462-29676481 None:intergenic 45.0%
GAGATTCCTACTCAGGGTTA+AGG - chr1_1:29676462-29676481 Msa0017770:intron 45.0%
TGGGTTCACCTGTTCTATTC+TGG - chr1_1:29676555-29676574 Msa0017770:intron 45.0%
!! TAGAGGTGCCAGAATAGAAC+AGG + chr1_1:29676566-29676585 None:intergenic 45.0%
CATTATGCTCAAACACTCCC+CGG - chr1_1:29676704-29676723 Msa0017770:intron 45.0%
AGAATCTCCAAGCAAAACCG+GGG + chr1_1:29676724-29676743 None:intergenic 45.0%
GAGAATCTCCAAGCAAAACC+GGG + chr1_1:29676725-29676744 None:intergenic 45.0%
AGTTATTGGGGAGTAAGGTG+TGG - chr1_1:29677127-29677146 Msa0017770:five_prime_UTR 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr1_1:29677239-29677258 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr1_1:29677262-29677281 Msa0017770:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr1_1:29677272-29677291 Msa0017770:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_1:29674467-29674486 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_1:29674468-29674487 None:intergenic 45.0%
!! ACGATAGTGGGGGACAATAT+TGG - chr1_1:29677969-29677988 Msa0017770:intron 45.0%
TTTGCTCAACTTATCGCGCT+TGG - chr1_1:29678028-29678047 Msa0017770:intron 45.0%
TTGCTCAACTTATCGCGCTT+GGG - chr1_1:29678029-29678048 Msa0017770:intron 45.0%
AACTAAGGAGCAGCGAGAAA+GGG + chr1_1:29678189-29678208 None:intergenic 45.0%
AAACTAAGGAGCAGCGAGAA+AGG + chr1_1:29678190-29678209 None:intergenic 45.0%
GATAGCTGAAGTGGCTATTG+AGG - chr1_1:29678836-29678855 Msa0017770:five_prime_UTR 45.0%
GTAAGCATAACCGCCCTAAC+TGG + chr1_1:29668645-29668664 None:intergenic 50.0%
GTGTACACAAACGCACGTTC+TGG - chr1_1:29669074-29669093 Msa0017770:intron 50.0%
! TAGGGCACCAACTCCATACA+GGG + chr1_1:29669839-29669858 None:intergenic 50.0%
! ATAGGGCACCAACTCCATAC+AGG + chr1_1:29669840-29669859 None:intergenic 50.0%
TATCATCCAGAGGTGACCCT+TGG + chr1_1:29669902-29669921 None:intergenic 50.0%
! GATTTGTTCCCTCTCCTAGC+TGG - chr1_1:29670547-29670566 Msa0017770:intron 50.0%
CGATTGTCCATCTTGAGGCT+AGG - chr1_1:29671617-29671636 Msa0017770:intron 50.0%
! CAGTTAGCCTAGCCTCAAGA+TGG + chr1_1:29671627-29671646 None:intergenic 50.0%
AGTGCAGATGACACCAGTGA+TGG + chr1_1:29671689-29671708 None:intergenic 50.0%
AGTTATTCAGCCTCCGGCTT+GGG + chr1_1:29672006-29672025 None:intergenic 50.0%
GAGGGAATCATGGGGAATGA+AGG + chr1_1:29672045-29672064 None:intergenic 50.0%
!! GAGACAGATAGGTTGATGCG+TGG + chr1_1:29672878-29672897 None:intergenic 50.0%
ACTCTTGAGAGGGAGCTTTG+CGG + chr1_1:29673258-29673277 None:intergenic 50.0%
AAAGCCCAAAACCAGGGAGA+GGG + chr1_1:29673404-29673423 None:intergenic 50.0%
AATCTTCTTTCCCCAGGACG+GGG - chr1_1:29673563-29673582 Msa0017770:intron 50.0%
! TCGATGGAGCGGCATTCTTT+TGG - chr1_1:29674011-29674030 Msa0017770:intron 50.0%
! CGATGGAGCGGCATTCTTTT+GGG - chr1_1:29674012-29674031 Msa0017770:intron 50.0%
GTCAAGTGAGGACCGAACAT+TGG + chr1_1:29674234-29674253 None:intergenic 50.0%
ATGTTCGGTCCTCACTTGAC+AGG - chr1_1:29674234-29674253 Msa0017770:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_1:29674463-29674482 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_1:29674469-29674488 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_1:29674466-29674485 Msa0017770:intron 50.0%
CAGTGAACATCGTGTGGTTC+AGG + chr1_1:29674843-29674862 None:intergenic 50.0%
CTGAACCACACGATGTTCAC+TGG - chr1_1:29674841-29674860 Msa0017770:intron 50.0%
TTGGACCAGTGAACATCGTG+TGG + chr1_1:29674849-29674868 None:intergenic 50.0%
! CTTGTGTTCCTTTTCCCGGT+TGG - chr1_1:29674939-29674958 Msa0017770:intron 50.0%
! AAGCCTTGTACCAACCCAAC+CGG + chr1_1:29674957-29674976 None:intergenic 50.0%
GGAACGAACATCGTGGACTT+TGG - chr1_1:29675057-29675076 Msa0017770:intron 50.0%
!! AACAGGTTTGGTGGGGAGTA+GGG + chr1_1:29675622-29675641 None:intergenic 50.0%
!! AAACAGGTTTGGTGGGGAGT+AGG + chr1_1:29675623-29675642 None:intergenic 50.0%
TTGCAGCCAATATGTGAGGC+GGG - chr1_1:29675863-29675882 Msa0017770:intron 50.0%
TTCCTTCCACTGCGGGAAAT+AGG + chr1_1:29675978-29675997 None:intergenic 50.0%
! ACTGCCTTTGCAAGTGTTGC+AGG + chr1_1:29676116-29676135 None:intergenic 50.0%
TCATCTGGTTGGGCAAGTCT+GGG - chr1_1:29676394-29676413 Msa0017770:intron 50.0%
!! CGGGGAGTGTTTGAGCATAA+TGG + chr1_1:29676706-29676725 None:intergenic 50.0%
! AAACACTCCCCGGTTTTGCT+TGG - chr1_1:29676714-29676733 Msa0017770:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_1:29674463-29674482 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_1:29674469-29674488 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_1:29674466-29674485 Msa0017770:intron 50.0%
GCCTATTGCACACAACGCAA+CGG - chr1_1:29677991-29678010 Msa0017770:intron 50.0%
ACCGTTGCGTTGTGTGCAAT+AGG + chr1_1:29677995-29678014 None:intergenic 50.0%
TGCTCAACTTATCGCGCTTG+GGG - chr1_1:29678030-29678049 Msa0017770:intron 50.0%
! CTTATCGCGCTTGGGGTTTT+TGG - chr1_1:29678037-29678056 Msa0017770:intron 50.0%
AAACGCTCCACAGTTTCAGC+TGG - chr1_1:29678064-29678083 Msa0017770:intron 50.0%
! ATGCGGCATGGGTTGTTTGT+AGG + chr1_1:29678324-29678343 None:intergenic 50.0%
! TGGAGCATTCAGATGGGCTT+GGG + chr1_1:29678349-29678368 None:intergenic 50.0%
CATTTCGTGGCCAGTTAGGG+CGG - chr1_1:29668632-29668651 Msa0017770:three_prime_UTR 55.0%
TGGACGCACTCACACACCAA+GGG - chr1_1:29669883-29669902 Msa0017770:intron 55.0%
CGTCAAGTGCATCCAGAGAG+TGG + chr1_1:29670870-29670889 None:intergenic 55.0%
AAGCTGAATTCCCAAGCCGG+AGG - chr1_1:29671993-29672012 Msa0017770:intron 55.0%
GAGTTATTCAGCCTCCGGCT+TGG + chr1_1:29672007-29672026 None:intergenic 55.0%
TGGATCCAAGTGAGGGGATG+GGG + chr1_1:29672162-29672181 None:intergenic 55.0%
CTGGATCCAAGTGAGGGGAT+GGG + chr1_1:29672163-29672182 None:intergenic 55.0%
ACTGGATCCAAGTGAGGGGA+TGG + chr1_1:29672164-29672183 None:intergenic 55.0%
TAGGTCGGGTATGACCACAG+TGG - chr1_1:29673232-29673251 Msa0017770:intron 55.0%
AAGCCCAAAACCAGGGAGAG+GGG + chr1_1:29673403-29673422 None:intergenic 55.0%
CAAAGCCCAAAACCAGGGAG+AGG + chr1_1:29673405-29673424 None:intergenic 55.0%
ATATGTTCAGCCCCGTCCTG+GGG + chr1_1:29673576-29673595 None:intergenic 55.0%
CATATGTTCAGCCCCGTCCT+GGG + chr1_1:29673577-29673596 None:intergenic 55.0%
ACATATGTTCAGCCCCGTCC+TGG + chr1_1:29673578-29673597 None:intergenic 55.0%
CGGGGCTGAACATATGTGCA+AGG - chr1_1:29673581-29673600 Msa0017770:intron 55.0%
CAGCAACATGGCACAACACC+TGG + chr1_1:29673639-29673658 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_1:29674455-29674474 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_1:29674454-29674473 Msa0017770:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_1:29674455-29674474 Msa0017770:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_1:29674461-29674480 Msa0017770:intron 55.0%
! GTTCCTTTTCCCGGTTGGGT+TGG - chr1_1:29674944-29674963 Msa0017770:intron 55.0%
GTACCAACCCAACCGGGAAA+AGG + chr1_1:29674950-29674969 None:intergenic 55.0%
!! TTCCCGGTTGGGTTGGTACA+AGG - chr1_1:29674951-29674970 Msa0017770:intron 55.0%
! AGCCTTGTACCAACCCAACC+GGG + chr1_1:29674956-29674975 None:intergenic 55.0%
ACTAGTGAGCTAGCACCCCA+TGG + chr1_1:29675394-29675413 None:intergenic 55.0%
TCACCACCCGCCTCACATAT+TGG + chr1_1:29675872-29675891 None:intergenic 55.0%
GTCCTATTTCCCGCAGTGGA+AGG - chr1_1:29675973-29675992 Msa0017770:intron 55.0%
! CCTTTGCAAGTGTTGCAGGC+AGG + chr1_1:29676112-29676131 None:intergenic 55.0%
CCTGCCTGCAACACTTGCAA+AGG - chr1_1:29676109-29676128 Msa0017770:intron 55.0%
GTCATCTGGTTGGGCAAGTC+TGG - chr1_1:29676393-29676412 Msa0017770:intron 55.0%
TTGGGGAGTAAGGTGTGGCA+AGG - chr1_1:29677132-29677151 Msa0017770:five_prime_UTR 55.0%
TGGGGAGTAAGGTGTGGCAA+GGG - chr1_1:29677133-29677152 Msa0017770:five_prime_UTR 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_1:29674455-29674474 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_1:29674454-29674473 Msa0017770:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_1:29674455-29674474 Msa0017770:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_1:29674461-29674480 Msa0017770:intron 55.0%
! GGAGCATTCAGATGGGCTTG+GGG + chr1_1:29678348-29678367 None:intergenic 55.0%
! CTGGAGCATTCAGATGGGCT+TGG + chr1_1:29678350-29678369 None:intergenic 55.0%
!! GTGGGCTGGAGCATTCAGAT+GGG + chr1_1:29678355-29678374 None:intergenic 55.0%
CAATCCCCTTGTCCTCTGGT+GGG + chr1_1:29678373-29678392 None:intergenic 55.0%
CAGAGGACAAGGGGATTGCT+GGG - chr1_1:29678375-29678394 Msa0017770:five_prime_UTR 55.0%
AGTGTGCGATGGATAGGTCC+TGG + chr1_1:29678528-29678547 None:intergenic 55.0%
GGACTCAGTGTGCGATGGAT+AGG + chr1_1:29678534-29678553 None:intergenic 55.0%
AAGTCGGACTCAGTGTGCGA+TGG + chr1_1:29678539-29678558 None:intergenic 55.0%
TCGCACACTGAGTCCGACTT+TGG - chr1_1:29678539-29678558 Msa0017770:five_prime_UTR 55.0%
TGCACTGGATCGGTCACATC+AGG + chr1_1:29678627-29678646 None:intergenic 55.0%
CACACTTGTGGTTGGCGCCT+TGG - chr1_1:29668664-29668683 Msa0017770:three_prime_UTR 60.0%
CTGCCACGTGGCAAACACCA+AGG + chr1_1:29668684-29668703 None:intergenic 60.0%
GTGGACGCACTCACACACCA+AGG - chr1_1:29669882-29669901 Msa0017770:intron 60.0%
CACACACCAAGGGTCACCTC+TGG - chr1_1:29669893-29669912 Msa0017770:intron 60.0%
CAAGTGAGGGGATGGGGAGT+GGG + chr1_1:29672156-29672175 None:intergenic 60.0%
! TCACCCCCTCTCCCTGGTTT+TGG - chr1_1:29673396-29673415 Msa0017770:intron 60.0%
!! CACCCCCTCTCCCTGGTTTT+GGG - chr1_1:29673397-29673416 Msa0017770:intron 60.0%
AGCCCAAAACCAGGGAGAGG+GGG + chr1_1:29673402-29673421 None:intergenic 60.0%
CAGCCAATATGTGAGGCGGG+TGG - chr1_1:29675866-29675885 Msa0017770:intron 60.0%
TATGTGAGGCGGGTGGTGAC+TGG - chr1_1:29675873-29675892 Msa0017770:intron 60.0%
GAGGGTCCTATTTCCCGCAG+TGG - chr1_1:29675969-29675988 Msa0017770:intron 60.0%
TGCAAAGGCAGTGCCAGCTC+AGG - chr1_1:29676124-29676143 Msa0017770:intron 60.0%
AAAGGCAGTGCCAGCTCAGG+TGG - chr1_1:29676127-29676146 Msa0017770:intron 60.0%
! GTTGTTGGTGGGGTGCAGCA+TGG - chr1_1:29677457-29677476 Msa0017770:intron 60.0%
! TCAGATGGGCTTGGGGCATG+CGG + chr1_1:29678341-29678360 None:intergenic 60.0%
!! GGTGGGCTGGAGCATTCAGA+TGG + chr1_1:29678356-29678375 None:intergenic 60.0%
TGAATGCTCCAGCCCACCAG+AGG - chr1_1:29678358-29678377 Msa0017770:five_prime_UTR 60.0%
TCCAGCCCACCAGAGGACAA+GGG - chr1_1:29678365-29678384 Msa0017770:five_prime_UTR 60.0%
GCAATCCCCTTGTCCTCTGG+TGG + chr1_1:29678374-29678393 None:intergenic 60.0%
CCAGCAATCCCCTTGTCCTC+TGG + chr1_1:29678377-29678396 None:intergenic 60.0%
CCAGAGGACAAGGGGATTGC+TGG - chr1_1:29678374-29678393 Msa0017770:five_prime_UTR 60.0%
!! GCGCCTTGGTGTTTGCCACG+TGG - chr1_1:29668678-29668697 Msa0017770:three_prime_UTR 65.0%
GGAGGGATGGATCTGCCACG+TGG + chr1_1:29668696-29668715 None:intergenic 65.0%
CCAAGTGAGGGGATGGGGAG+TGG + chr1_1:29672157-29672176 None:intergenic 65.0%
CCACTCCCCATCCCCTCACT+TGG - chr1_1:29672154-29672173 Msa0017770:intron 65.0%
AGGGAGCTTTGCGGCCACTG+TGG + chr1_1:29673249-29673268 None:intergenic 65.0%
AGCATCTCACCCCCTCTCCC+TGG - chr1_1:29673390-29673409 Msa0017770:intron 65.0%
CTCCAGCCCACCAGAGGACA+AGG - chr1_1:29678364-29678383 Msa0017770:five_prime_UTR 65.0%
CCAGCCCACCAGAGGACAAG+GGG - chr1_1:29678366-29678385 Msa0017770:five_prime_UTR 65.0%
GGGCTTGGGGCATGCGGCAT+GGG + chr1_1:29678335-29678354 None:intergenic 70.0%
TGGGCTTGGGGCATGCGGCA+TGG + chr1_1:29678336-29678355 None:intergenic 70.0%
! CCCCTTGTCCTCTGGTGGGC+TGG + chr1_1:29678369-29678388 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29668632 29678869 29668632 ID=Msa0017770;Name=Msa0017770
chr1_1 mRNA 29668632 29678869 29668632 ID=Msa0017770-mRNA-1;Parent=Msa0017770;Name=Msa0017770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=703|0.69|0.85|0.92|0.92|0.92|14|195|843
chr1_1 exon 29668632 29668999 29668632 ID=Msa0017770-mRNA-1:exon:9908;Parent=Msa0017770-mRNA-1
chr1_1 exon 29669082 29669253 29669082 ID=Msa0017770-mRNA-1:exon:9907;Parent=Msa0017770-mRNA-1
chr1_1 exon 29669324 29669557 29669324 ID=Msa0017770-mRNA-1:exon:9906;Parent=Msa0017770-mRNA-1
chr1_1 exon 29670131 29670316 29670131 ID=Msa0017770-mRNA-1:exon:9905;Parent=Msa0017770-mRNA-1
chr1_1 exon 29670859 29671134 29670859 ID=Msa0017770-mRNA-1:exon:9904;Parent=Msa0017770-mRNA-1
chr1_1 exon 29671356 29671632 29671356 ID=Msa0017770-mRNA-1:exon:9903;Parent=Msa0017770-mRNA-1
chr1_1 exon 29672468 29672766 29672468 ID=Msa0017770-mRNA-1:exon:9902;Parent=Msa0017770-mRNA-1
chr1_1 exon 29672844 29672882 29672844 ID=Msa0017770-mRNA-1:exon:9901;Parent=Msa0017770-mRNA-1
chr1_1 exon 29673746 29673922 29673746 ID=Msa0017770-mRNA-1:exon:9900;Parent=Msa0017770-mRNA-1
chr1_1 exon 29674563 29674772 29674563 ID=Msa0017770-mRNA-1:exon:9899;Parent=Msa0017770-mRNA-1
chr1_1 exon 29674879 29674942 29674879 ID=Msa0017770-mRNA-1:exon:9898;Parent=Msa0017770-mRNA-1
chr1_1 exon 29675683 29675829 29675683 ID=Msa0017770-mRNA-1:exon:9897;Parent=Msa0017770-mRNA-1
chr1_1 exon 29676843 29677201 29676843 ID=Msa0017770-mRNA-1:exon:9896;Parent=Msa0017770-mRNA-1
chr1_1 exon 29678248 29678869 29678248 ID=Msa0017770-mRNA-1:exon:9895;Parent=Msa0017770-mRNA-1
chr1_1 five_prime_UTR 29678248 29678869 29678248 ID=Msa0017770-mRNA-1:five_prime_utr;Parent=Msa0017770-mRNA-1
chr1_1 five_prime_UTR 29677121 29677201 29677121 ID=Msa0017770-mRNA-1:five_prime_utr;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29676843 29677120 29676843 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29675683 29675829 29675683 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29674879 29674942 29674879 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29674563 29674772 29674563 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29673746 29673922 29673746 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29672844 29672882 29672844 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29672468 29672766 29672468 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29671356 29671632 29671356 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29670859 29671134 29670859 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29670131 29670316 29670131 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29669324 29669557 29669324 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29669082 29669253 29669082 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 CDS 29668827 29668999 29668827 ID=Msa0017770-mRNA-1:cds;Parent=Msa0017770-mRNA-1
chr1_1 three_prime_UTR 29668632 29668826 29668632 ID=Msa0017770-mRNA-1:three_prime_utr;Parent=Msa0017770-mRNA-1
Gene Sequence

>Msa0017770

ATGGACATTGTTGCTCTTTTAACTTCTGCTGGAATTAATATCGTTGTGTGTGTGGTGATCTTTTCACTTTATTCTATACTAAGAAAACAGCCCAGCAATGTTAATGTGTACTTTGCACGGAGGCTAGCATCTCAGTATTCTAGACACGTTGATTTCTGGCTGGAAAGATTTGTTCCCTCTCCTAGCTGGATATTAAAAGCATGGGAAACATCTGAGAATGAGATATTGGCTATTGGTGGCTTGGATGCTGTAGTTTTTGTAAGGATAGTCGTGTTCAGTATTCGAGTTTTTTCCATCACTGGTGTCATCTGCACTGTTCTAGTGCTTCCTGTGAATTATTACGGTAAAGGCAGACTACATAAGCATATACCTTTGGAGTCACTGGATGTATTTACCATTGAGAATGTCGAAGAAGGTTCAAAATGGCTTTGGGCTCATTGTCTTGCATTATACATCATAACACTTGCAGCTTGCACTCTCCTTTACTTTGAATACAAGAGCATTACTAAGTTGAGGCTACTACATATTACTGGATCTCCTCCAAGTCTAAGTCATTTTACTATTCTTGTCCGATCAATTCCCTGGTCTATAAGCGAATCATACTGTGATACAGTGAACAAATTCTTCTCACAGTACCACGCATCAACCTATCTGTCTCACCAAATGATTTATAAGTGTGGCAAAGTTCAGAAACTGAAGGACGGGGCTGAACATATGTGCAAGGTACTTAAAGATTCATCGGAAAATAGTTGCAAGCCAGGTGTTGTGCCATGTTGCTGTTTGGGAAATTCCACAGATTCTTTTAAGATGGTTTCTAATGAGATGGGTAGTATTCATGAGAGAACATGCTACACTGACATAGATACGAGGAAAAGGGTTATTATAATCCTTGTTGTCATTGAGTCGTTACATGAAGAATTCCCAGCTGCTTTTGTGTTCTTTAAAAGTCGGTATGCTGCTCTTATGGCTGCACAGACTCTACAAACATCAAATCCTATGTTATGGGCGACAGACATGGCTCCTGAACCACACGATGTTCACTGGTCCAACATTCGTGTACCATATAGGCAAATTTGGATCCGTAAGATGGCTACATTTTCTGCTACGATTGCCTTCATGCTTGTGTTCCTTTTCCCGGTTGGGTTGGTACAAGGCTTGACTCAACTAGAAAAACTTCAGAAAATGTTTCCTTTTCTGGCAGGGGTACTTAAAAACCAATATGTGAGGCGGGTGGTGACTGGTTACCTACCAAGTGTGATATTGGTTTTATTTTTCTGTTTTGTTCCACCATTGATGATGCTATTTTCAACAGTTGAGGGTCCTATTTCCCGCAGTGGAAGGAAGAAAAGTGCATGTTGGAAAGTTTTGTACTTCACAATCTGGAATGTATTTTTTGTTAATGTCTTATATGGTTCTCTTATCAGTCAACTTTTAGTCTTTTCTAGCTTAAAAGACCTGCCTGCAACACTTGCAAAGGCAGTGCCAGCTCAGGGTACCTTCTTCACGACTTACATTTTGTCATCTGGTTGGGCAAGTCTGGGATTTGAACTTCTGCAAGTTTGTCCTCTTTTATACAATCTATTCCAGAGATTCCTACTCAGGGTTAAGGATGATACACTTAATGGCATAACTTTTCCATACCATACAGAAGTTCCTAGGCTATTACTGTTTGGATTTCTTGGGTTCACCTGTTCTATTCTGGCACCTCTAATGCTTCCCTTCTTATTGATCTATTTTTTCCTTGCTTATCTTGTTTACCGAAACCAGCATTCTCTGACAGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGACCCGTAGATGCCGTTGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACCATTAGAGAAACCATTAGAAAAGACTTAGAGGTCAATGAGTTGGATCCAAATATGATTATCAACGTGTACATTACAAAATACGATAGTGGGGGACAATATTGGCCTATTGCACACAACGCAACGGTCTGCTCTTTGCTATTTGCTCAACTTATCGCGCTTGGGGTTTTTGGACTAAAACGCTCCACAGTTTCAGCTGGATTTATTGTTCCCTTGCTCATTGTTACCATTCTTTTTCACCAGTACTGTAGGAAACGATTTCTCCCAGTATTTAGAAGCAATTCAGCACAGATTCTTATTGACTTGGATAAGAAAGATGAACAATGTGGAAAGATGGAAGAGATTTATGAACAATTGCGTTCGGCCTACAAACAACCCATGCCGCATGCCCCAAGCCCATCTGAATGCTCCAGCCCACCAGAGGACAAGGGGATTGCTGGGACTTCAGAAGATATCGAGAAAGGCGTAGTCATTAAACAGACTAGACCAGGACCTATCCATCGCACACTGAGTCCGACTTTGGATATATCGGTACTTGGTGGAAATCAAGTGAGCGATCCCGCTTGTACATTGAATAAGAATATTCCTGATGTGACCGATCCAGTGCATGAACATCTAATTAAAGATGGATTATGA
Protein sequence

>Msa0017770

MDIVALLTSAGINIVVCVVIFSLYSILRKQPSNVNVYFARRLASQYSRHVDFWLERFVPSPSWILKAWETSENEILAIGGLDAVVFVRIVVFSIRVFSITGVICTVLVLPVNYYGKGRLHKHIPLESLDVFTIENVEEGSKWLWAHCLALYIITLAACTLLYFEYKSITKLRLLHITGSPPSLSHFTILVRSIPWSISESYCDTVNKFFSQYHASTYLSHQMIYKCGKVQKLKDGAEHMCKVLKDSSENSCKPGVVPCCCLGNSTDSFKMVSNEMGSIHERTCYTDIDTRKRVIIILVVIESLHEEFPAAFVFFKSRYAALMAAQTLQTSNPMLWATDMAPEPHDVHWSNIRVPYRQIWIRKMATFSATIAFMLVFLFPVGLVQGLTQLEKLQKMFPFLAGVLKNQYVRRVVTGYLPSVILVLFFCFVPPLMMLFSTVEGPISRSGRKKSACWKVLYFTIWNVFFVNVLYGSLISQLLVFSSLKDLPATLAKAVPAQGTFFTTYILSSGWASLGFELLQVCPLLYNLFQRFLLRVKDDTLNGITFPYHTEVPRLLLFGFLGFTCSILAPLMLPFLLIYFFLAYLVYRNQHSLTENRLRWFGHVERRPVDAVVRRVDQMEESQVKRGRGRPKKTIRETIRKDLEVNELDPNMIINVYITKYDSGGQYWPIAHNATVCSLLFAQLIALGVFGLKRSTVSAGFIVPLLIVTILFHQYCRKRFLPVFRSNSAQILIDLDKKDEQCGKMEEIYEQLRSAYKQPMPHAPSPSECSSPPEDKGIAGTSEDIEKGVVIKQTRPGPIHRTLSPTLDISVLGGNQVSDPACTLNKNIPDVTDPVHEHLIKDGL*