Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120070 | RDY07179.1 | 62.424 | 165 | 15 | 2 | 167 | 285 | 19 | 182 | 1.31e-39 | 155 |
| Msa0120070 | RDY07179.1 | 65.493 | 284 | 81 | 4 | 1 | 278 | 185 | 457 | 5.07e-95 | 299 |
| Msa0120070 | RDY07179.1 | 72.897 | 321 | 48 | 4 | 1 | 283 | 8 | 327 | 1.29e-127 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120070 | sp|P0DI40|CASP1_VIGUN | 75.000 | 168 | 20 | 2 | 1 | 148 | 1 | 166 | 1.38e-77 | 237 |
| Msa0120070 | sp|P0DI40|CASP1_VIGUN | 61.878 | 181 | 20 | 2 | 170 | 304 | 15 | 192 | 3.20e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120070 | A0A371HWL0 | 62.424 | 165 | 15 | 2 | 167 | 285 | 19 | 182 | 6.25e-40 | 155 |
| Msa0120070 | A0A371HWL0 | 65.493 | 284 | 81 | 4 | 1 | 278 | 185 | 457 | 2.42e-95 | 299 |
| Msa0120070 | A0A371HWL0 | 72.897 | 321 | 48 | 4 | 1 | 283 | 8 | 327 | 6.16e-128 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0120070 | 0.814004 | 1.921550e-51 | -8.615850e-47 |
| Msa0024280 | Msa0120070 | 0.827396 | 1.601404e-54 | -8.615850e-47 |
| Msa0024290 | Msa0120070 | 0.885432 | 8.173990e-72 | -8.615850e-47 |
| Msa0037730 | Msa0120070 | 0.807748 | 4.343859e-50 | -8.615850e-47 |
| Msa0048950 | Msa0120070 | 0.831046 | 2.084416e-55 | -8.615850e-47 |
| Msa0059880 | Msa0120070 | 0.829773 | 4.268152e-55 | -8.615850e-47 |
| Msa0072030 | Msa0120070 | 0.881285 | 2.724997e-70 | -8.615850e-47 |
| Msa0102930 | Msa0120070 | 0.811629 | 6.361458e-51 | -8.615850e-47 |
| Msa0114610 | Msa0120070 | 0.802417 | 5.665356e-49 | -8.615850e-47 |
| Msa0120050 | Msa0120070 | 0.846950 | 1.574253e-59 | -8.615850e-47 |
| Msa0120070 | Msa0140270 | 0.802179 | 6.341767e-49 | -8.615850e-47 |
| Msa0120070 | Msa0147670 | 0.831510 | 1.602502e-55 | -8.615850e-47 |
| Msa0120070 | Msa0150910 | 0.817423 | 3.322731e-52 | -8.615850e-47 |
| Msa0120070 | Msa0163340 | 0.849294 | 3.545559e-60 | -8.615850e-47 |
| Msa0120070 | Msa0163370 | 0.954771 | 1.392691e-112 | -8.615850e-47 |
| Msa0120070 | Msa0219210 | 0.829475 | 5.042471e-55 | -8.615850e-47 |
| Msa0120070 | Msa0223880 | 0.823959 | 1.045789e-53 | -8.615850e-47 |
| Msa0120070 | Msa0265060 | 0.814099 | 1.830251e-51 | -8.615850e-47 |
| Msa0120070 | Msa0278950 | 0.805858 | 1.089618e-49 | -8.615850e-47 |
| Msa0120070 | Msa0298270 | 0.831133 | 1.984228e-55 | -8.615850e-47 |
| Msa0120070 | Msa0336070 | 0.815607 | 8.475409e-52 | -8.615850e-47 |
| Msa0120070 | Msa0336630 | 0.820942 | 5.254292e-53 | -8.615850e-47 |
| Msa0120070 | Msa0340650 | 0.819945 | 8.895279e-53 | -8.615850e-47 |
| Msa0120070 | Msa0374130 | 0.805915 | 1.059865e-49 | -8.615850e-47 |
| Msa0120070 | Msa0384170 | 0.803785 | 2.953422e-49 | -8.615850e-47 |
| Msa0120070 | Msa0414480 | 0.812527 | 4.054401e-51 | -8.615850e-47 |
| Msa0120070 | Msa0425950 | 0.803404 | 3.543314e-49 | -8.615850e-47 |
| Msa0120070 | Msa0469550 | 0.818181 | 2.241520e-52 | -8.615850e-47 |
| Msa0120070 | Msa0491770 | 0.802203 | 6.271366e-49 | -8.615850e-47 |
| Msa0120070 | Msa0515260 | 0.826710 | 2.336113e-54 | -8.615850e-47 |
| Msa0120070 | Msa0543740 | 0.816224 | 6.174750e-52 | -8.615850e-47 |
| Msa0120070 | Msa0548970 | 0.853397 | 2.455524e-61 | -8.615850e-47 |
| Msa0120070 | Msa0591490 | 0.808478 | 3.036357e-50 | -8.615850e-47 |
| Msa0120070 | Msa0599600 | 0.829660 | 4.545313e-55 | -8.615850e-47 |
| Msa0120070 | Msa0605470 | 0.838722 | 2.429378e-57 | -8.615850e-47 |
| Msa0120070 | Msa0640290 | 0.808430 | 3.108955e-50 | -8.615850e-47 |
| Msa0120070 | Msa0643840 | 0.811635 | 6.345131e-51 | -8.615850e-47 |
| Msa0120070 | Msa0650310 | 0.807446 | 5.033748e-50 | -8.615850e-47 |
| Msa0120070 | Msa0670360 | 0.804355 | 2.247723e-49 | -8.615850e-47 |
| Msa0120070 | Msa0678620 | 0.839027 | 2.024776e-57 | -8.615850e-47 |
| Msa0120070 | Msa0684720 | 0.830084 | 3.583051e-55 | -8.615850e-47 |
| Msa0120070 | Msa0727480 | 0.848980 | 4.337010e-60 | -8.615850e-47 |
| Msa0120070 | Msa0735280 | 0.823231 | 1.548094e-53 | -8.615850e-47 |
| Msa0120070 | Msa0768670 | 0.840979 | 6.272890e-58 | -8.615850e-47 |
| Msa0120070 | Msa0768720 | 0.831560 | 1.557455e-55 | -8.615850e-47 |
| Msa0120070 | Msa0777250 | 0.845327 | 4.351313e-59 | -8.615850e-47 |
| Msa0120070 | Msa0814230 | 0.837415 | 5.268727e-57 | -8.615850e-47 |
| Msa0120070 | Msa0854840 | 0.805772 | 1.135739e-49 | -8.615850e-47 |
| Msa0120070 | Msa0883640 | 0.836758 | 7.754546e-57 | -8.615850e-47 |
| Msa0120070 | Msa0896920 | 0.830075 | 3.602455e-55 | -8.615850e-47 |
| Msa0120070 | Msa0910830 | 0.848250 | 6.908488e-60 | -8.615850e-47 |
| Msa0120070 | Msa0913550 | 0.843946 | 1.024483e-58 | -8.615850e-47 |
| Msa0120070 | Msa0941120 | 0.806636 | 7.471457e-50 | -8.615850e-47 |
| Msa0120070 | Msa0951150 | 0.811873 | 5.630520e-51 | -8.615850e-47 |
| Msa0120070 | Msa0960090 | 0.838153 | 3.405460e-57 | -8.615850e-47 |
| Msa0120070 | Msa0967820 | 0.810487 | 1.124688e-50 | -8.615850e-47 |
| Msa0120070 | Msa0985700 | 0.837735 | 4.361642e-57 | -8.615850e-47 |
| Msa0120070 | Msa0987640 | 0.813991 | 1.933571e-51 | -8.615850e-47 |
| Msa0120070 | Msa1021620 | 0.849791 | 2.577917e-60 | -8.615850e-47 |
| Msa0120070 | Msa1024350 | 0.822808 | 1.942569e-53 | -8.615850e-47 |
| Msa0120070 | Msa1061670 | 0.834710 | 2.560377e-56 | -8.615850e-47 |
| Msa0120070 | Msa1106960 | 0.831328 | 1.776485e-55 | -8.615850e-47 |
| Msa0120070 | Msa1109880 | 0.815807 | 7.651397e-52 | -8.615850e-47 |
| Msa0120070 | Msa1109890 | 0.823106 | 1.655649e-53 | -8.615850e-47 |
| Msa0120070 | Msa1149020 | 0.822832 | 1.917871e-53 | -8.615850e-47 |
| Msa0120070 | Msa1164240 | 0.803356 | 3.624245e-49 | -8.615850e-47 |
| Msa0120070 | Msa1166530 | 0.800996 | 1.108620e-48 | -8.615850e-47 |
| Msa0120070 | Msa1233650 | 0.803739 | 3.019138e-49 | -8.615850e-47 |
| Msa0120070 | Msa1269050 | 0.837362 | 5.436435e-57 | -8.615850e-47 |
| Msa0120070 | Msa1300610 | 0.823895 | 1.082797e-53 | -8.615850e-47 |
| Msa0120070 | Msa1323030 | 0.821048 | 4.966468e-53 | -8.615850e-47 |
| Msa0120070 | Msa1323120 | 0.843805 | 1.117488e-58 | -8.615850e-47 |
| Msa0120070 | Msa1323160 | 0.803204 | 3.898427e-49 | -8.615850e-47 |
| Msa0120070 | Msa1329740 | 0.829776 | 4.259002e-55 | -8.615850e-47 |
| Msa0120070 | Msa1357490 | 0.809630 | 1.720932e-50 | -8.615850e-47 |
| Msa0120070 | Msa1357750 | 0.820154 | 7.969196e-53 | -8.615850e-47 |
| Msa0120070 | Msa1376070 | 0.800578 | 1.349305e-48 | -8.615850e-47 |
| Msa0120070 | Msa1377520 | 0.809568 | 1.774732e-50 | -8.615850e-47 |
| Msa0120070 | Msa1407670 | 0.807217 | 5.630216e-50 | -8.615850e-47 |
| Msa0120070 | Msa1420020 | 0.830853 | 2.323724e-55 | -8.615850e-47 |
| Msa0120070 | Msa1445900 | 0.840380 | 9.002297e-58 | -8.615850e-47 |
| Msa0120070 | Msa1449770 | 0.803864 | 2.844243e-49 | -8.615850e-47 |
| Msa0120070 | Msa1459610 | 0.844565 | 6.988882e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120070 | MtrunA17_Chr1g0178191 | 86.631 | 187 | 5 | 1 | 1 | 167 | 1 | 187 | 7.81e-109 | 314 |
| Msa0120070 | MtrunA17_Chr1g0178191 | 68.681 | 182 | 10 | 2 | 169 | 304 | 14 | 194 | 3.77e-54 | 175 |
| Msa0120070 | MtrunA17_Chr1g0178161 | 68.539 | 178 | 34 | 2 | 1 | 156 | 1 | 178 | 1.49e-75 | 229 |
| Msa0120070 | MtrunA17_Chr1g0178161 | 63.128 | 179 | 20 | 1 | 172 | 304 | 18 | 196 | 1.65e-56 | 181 |
| Msa0120070 | MtrunA17_Chr1g0178181 | 76.271 | 177 | 21 | 2 | 1 | 156 | 1 | 177 | 2.37e-73 | 224 |
| Msa0120070 | MtrunA17_Chr1g0178181 | 73.370 | 184 | 3 | 1 | 167 | 304 | 12 | 195 | 9.63e-62 | 194 |
| Msa0120070 | MtrunA17_Chr7g0217691 | 41.714 | 175 | 78 | 2 | 12 | 166 | 8 | 178 | 2.44e-42 | 144 |
| Msa0120070 | MtrunA17_Chr7g0217691 | 36.471 | 170 | 62 | 1 | 181 | 304 | 17 | 186 | 6.72e-29 | 109 |
| Msa0120070 | MtrunA17_Chr2g0321671 | 51.829 | 164 | 59 | 1 | 23 | 166 | 49 | 212 | 6.74e-40 | 139 |
| Msa0120070 | MtrunA17_Chr2g0321671 | 44.509 | 173 | 50 | 1 | 177 | 303 | 47 | 219 | 2.80e-26 | 103 |
| Msa0120070 | MtrunA17_Chr4g0042551 | 41.573 | 178 | 79 | 4 | 9 | 166 | 37 | 209 | 2.01e-36 | 130 |
| Msa0120070 | MtrunA17_Chr4g0042551 | 32.948 | 173 | 68 | 2 | 177 | 303 | 46 | 216 | 3.17e-25 | 100 |
| Msa0120070 | MtrunA17_Chr5g0417761 | 39.506 | 162 | 78 | 1 | 28 | 169 | 20 | 181 | 9.91e-32 | 116 |
| Msa0120070 | MtrunA17_Chr5g0417761 | 33.533 | 167 | 65 | 1 | 184 | 304 | 20 | 186 | 8.32e-21 | 87.8 |
| Msa0120070 | MtrunA17_Chr4g0021111 | 35.811 | 148 | 80 | 3 | 31 | 165 | 3 | 148 | 7.42e-17 | 76.6 |
| Msa0120070 | MtrunA17_Chr2g0303151 | 40.789 | 76 | 44 | 1 | 223 | 297 | 110 | 185 | 9.09e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120070 | AT2G36100.1 | 54.645 | 183 | 54 | 2 | 2 | 155 | 5 | 187 | 9.31e-53 | 172 |
| Msa0120070 | AT2G36100.1 | 42.473 | 186 | 59 | 3 | 165 | 304 | 23 | 206 | 1.06e-33 | 122 |
| Msa0120070 | AT5G06200.1 | 56.842 | 190 | 57 | 3 | 2 | 166 | 5 | 194 | 1.07e-51 | 169 |
| Msa0120070 | AT5G06200.1 | 50.000 | 110 | 55 | 0 | 194 | 303 | 92 | 201 | 4.62e-24 | 97.4 |
| Msa0120070 | AT3G11550.1 | 56.771 | 192 | 56 | 3 | 2 | 166 | 5 | 196 | 3.03e-46 | 155 |
| Msa0120070 | AT3G11550.1 | 50.450 | 111 | 55 | 0 | 194 | 304 | 94 | 204 | 1.14e-24 | 99.0 |
| Msa0120070 | AT2G27370.1 | 52.795 | 161 | 56 | 2 | 26 | 166 | 52 | 212 | 5.51e-44 | 150 |
| Msa0120070 | AT2G27370.1 | 36.598 | 194 | 63 | 2 | 170 | 303 | 26 | 219 | 2.47e-33 | 122 |
| Msa0120070 | AT5G15290.1 | 43.333 | 150 | 65 | 1 | 25 | 154 | 17 | 166 | 7.74e-36 | 127 |
| Msa0120070 | AT5G15290.1 | 42.105 | 95 | 55 | 0 | 190 | 284 | 72 | 166 | 4.65e-20 | 86.3 |
| Msa0120070 | AT1G14160.1 | 37.179 | 156 | 78 | 1 | 30 | 165 | 45 | 200 | 5.04e-29 | 110 |
| Msa0120070 | AT1G14160.1 | 29.697 | 165 | 70 | 1 | 186 | 304 | 45 | 209 | 3.66e-20 | 87.0 |
| Msa0120070 | AT1G03700.1 | 35.714 | 140 | 75 | 4 | 39 | 165 | 12 | 149 | 2.38e-15 | 72.8 |
| Msa0120070 | AT4G03540.1 | 35.088 | 114 | 59 | 3 | 55 | 155 | 28 | 139 | 2.92e-12 | 64.3 |
Find 67 sgRNAs with CRISPR-Local
Find 431 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTAATGTTGCTTGATTC+TGG | 0.072454 | 1_3:+44713282 | None:intergenic |
| TTCCATCCTCCTGGCCTTGC+AGG | 0.176057 | 1_3:+44706862 | None:intergenic |
| CTAGCCATTTGCAACCAATT+TGG | 0.242258 | 1_3:-44706048 | Msa0120070:CDS |
| CTAGCCATTTGCAACCAATT+TGG | 0.242258 | 1_3:-44712587 | Msa0120070:CDS |
| GTGATGTCTGCTTTGGCTAT+TGG | 0.247792 | 1_3:-44705952 | Msa0120070:CDS |
| TGATGTCTGCTTTGGCTATT+GGG | 0.288501 | 1_3:-44705951 | Msa0120070:CDS |
| CCTTAAAATGAAATCCATTA+TGG | 0.301071 | 1_3:+44706828 | None:intergenic |
| AAGGCCTGGAGGATGGAAAA+AGG | 0.302153 | 1_3:-44713232 | Msa0120070:CDS |
| CCTTAGAATGAAATCCATTA+TGG | 0.309686 | 1_3:+44713203 | None:intergenic |
| CCATAATGGATTTCATTCTA+AGG | 0.312115 | 1_3:-44713203 | Msa0120070:CDS |
| TACTAAAGGAAAAGCTGTTT+TGG | 0.315060 | 1_3:-44706893 | Msa0120070:CDS |
| TTCCATCCTCCAGGCCTTGT+AGG | 0.319831 | 1_3:+44713237 | None:intergenic |
| AAGGCCAGGAGGATGGAAAA+AGG | 0.353235 | 1_3:-44706857 | Msa0120070:CDS |
| TATTGCCGCTGCCGCCTCAA+TGG | 0.357738 | 1_3:-44713160 | Msa0120070:CDS |
| ATTGCCGCTGCCGCCTCAAT+GGG | 0.364904 | 1_3:-44713159 | Msa0120070:CDS |
| TGTTAATGTTGCTTGATTCT+GGG | 0.378773 | 1_3:+44713283 | None:intergenic |
| ATGGATTTCATTCTAAGGTT+AGG | 0.379588 | 1_3:-44713198 | Msa0120070:CDS |
| TCTTGCCGCTGCCGCCTCGA+TGG | 0.384071 | 1_3:-44706785 | Msa0120070:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.385601 | 1_3:-44706100 | Msa0120070:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.387801 | 1_3:-44712639 | Msa0120070:CDS |
| CTTGCCGCTGCCGCCTCGAT+GGG | 0.402133 | 1_3:-44706784 | Msa0120070:CDS |
| GTTGGTTGTGATGTCTGCTT+TGG | 0.406589 | 1_3:-44705959 | Msa0120070:CDS |
| GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1_3:+44706034 | None:intergenic |
| GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1_3:+44712573 | None:intergenic |
| ATGGAAATCAAGACACAAAC+TGG | 0.414877 | 1_3:-44706071 | Msa0120070:CDS |
| ATGGAAATCAAGACACAAAC+TGG | 0.414877 | 1_3:-44712610 | Msa0120070:CDS |
| AGCTGCAGCAGCACTTGAAG+TGG | 0.421850 | 1_3:+44712658 | None:intergenic |
| AGCGGCAAGAGCTGCTGCTA+TGG | 0.432197 | 1_3:+44706798 | None:intergenic |
| AGCGGCAATAGCCGCTGCTA+TGG | 0.444367 | 1_3:+44713173 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.445100 | 1_3:+44706044 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.445100 | 1_3:+44712583 | None:intergenic |
| GTTGCAGCACCTGCAAGGCC+AGG | 0.457764 | 1_3:-44706871 | Msa0120070:CDS |
| TGGTAGGGATAGAACTAAGT+AGG | 0.473587 | 1_3:+44712945 | None:intergenic |
| CACCTGCAAGGCCAGGAGGA+TGG | 0.475215 | 1_3:-44706864 | Msa0120070:CDS |
| TGTTCCCATTGAGGCGGCAG+CGG | 0.482406 | 1_3:+44713155 | None:intergenic |
| CTAGTTGCACCTACAAGGCC+TGG | 0.489392 | 1_3:-44713246 | Msa0120070:CDS |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1_3:+44706092 | None:intergenic |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1_3:+44712631 | None:intergenic |
| AAGCCTTGGTCCAGTTGCAT+GGG | 0.497314 | 1_3:+44706446 | None:intergenic |
| GCTTGATTCTGGGACATCAA+TGG | 0.503870 | 1_3:+44713293 | None:intergenic |
| TGGCTACGACAGAGAATGGT+AGG | 0.504458 | 1_3:+44712929 | None:intergenic |
| CAATTCTAGTTGCACCTACA+AGG | 0.507515 | 1_3:-44713251 | Msa0120070:CDS |
| CACCTACAAGGCCTGGAGGA+TGG | 0.513895 | 1_3:-44713239 | Msa0120070:CDS |
| TGTTCCCATCGAGGCGGCAG+CGG | 0.517932 | 1_3:+44706780 | None:intergenic |
| ATGATGGCTACGACAGAGAA+TGG | 0.518145 | 1_3:+44712925 | None:intergenic |
| AAAGCCTTGGTCCAGTTGCA+TGG | 0.518863 | 1_3:+44706445 | None:intergenic |
| CTGATCACTTGTTCCCATTG+AGG | 0.525536 | 1_3:+44713146 | None:intergenic |
| ATTGCAGGTATTTCTTACAC+TGG | 0.547240 | 1_3:-44706142 | Msa0120070:intron |
| GAATCAAGCAAAGATACTAA+AGG | 0.552945 | 1_3:-44706907 | Msa0120070:intron |
| ATCACTTGTTCCCATTGAGG+CGG | 0.575884 | 1_3:+44713149 | None:intergenic |
| ACTGAGATCTTACAGTGTCT+AGG | 0.580647 | 1_3:+44706412 | None:intergenic |
| AGTTGCATCATTTATTACTG+TGG | 0.594258 | 1_3:-44712534 | Msa0120070:CDS |
| TGTGGCATCATTTATTACTG+TGG | 0.599611 | 1_3:-44705995 | Msa0120070:CDS |
| ACAGACAAGTGGTGCAGTTG+TGG | 0.601968 | 1_3:-44706013 | Msa0120070:CDS |
| AGCCTTGGTCCAGTTGCATG+GGG | 0.616293 | 1_3:+44706447 | None:intergenic |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1_3:-44706090 | Msa0120070:CDS |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1_3:-44712629 | Msa0120070:CDS |
| GCAGCACCTGCAAGGCCAGG+AGG | 0.636977 | 1_3:-44706868 | Msa0120070:CDS |
| AGAATCAAGCAACATTAACA+AGG | 0.641758 | 1_3:-44713280 | Msa0120070:CDS |
| ATCACTTGTTCCCATCGAGG+CGG | 0.653937 | 1_3:+44706774 | None:intergenic |
| AAGGTTAGGTGCCATAGCAG+CGG | 0.656083 | 1_3:-44713184 | Msa0120070:CDS |
| TTGATCACTTGTTCCCATCG+AGG | 0.661241 | 1_3:+44706771 | None:intergenic |
| GGCTACGACAGAGAATGGTA+GGG | 0.661247 | 1_3:+44712930 | None:intergenic |
| GATTTCTGTGCACAGACAAG+TGG | 0.683686 | 1_3:-44706024 | Msa0120070:CDS |
| GATTTCTGTGCACAGACAAG+TGG | 0.683686 | 1_3:-44712563 | Msa0120070:CDS |
| GCCTTGGTCCAGTTGCATGG+GGG | 0.707472 | 1_3:+44706448 | None:intergenic |
| GTTGCACCTACAAGGCCTGG+AGG | 0.707990 | 1_3:-44713243 | Msa0120070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAAATAAATATATA+TGG | - | chr1_3:44707777-44707796 | Msa0120070:intron | 0.0% |
| !! | TTGTTAATAAAAATATGATA+AGG | - | chr1_3:44706446-44706465 | Msa0120070:CDS | 10.0% |
| !! | TGTTAATAAAAATATGATAA+GGG | - | chr1_3:44706447-44706466 | Msa0120070:CDS | 10.0% |
| !! | GAATTTATCATTAAAAAATA+AGG | + | chr1_3:44707541-44707560 | None:intergenic | 10.0% |
| !! | CTTAACAAAATTAATAAATA+AGG | - | chr1_3:44708202-44708221 | Msa0120070:intron | 10.0% |
| !! | TTTATTACTTAAATATTGAA+TGG | - | chr1_3:44708746-44708765 | Msa0120070:intron | 10.0% |
| !!! | GTATTAGCTTATTATAATTA+TGG | + | chr1_3:44706234-44706253 | None:intergenic | 15.0% |
| !! | GTTAATAAAAATATGATAAG+GGG | - | chr1_3:44706448-44706467 | Msa0120070:CDS | 15.0% |
| !! | ATTAAATTGTATACATCAAT+CGG | + | chr1_3:44706486-44706505 | None:intergenic | 15.0% |
| !!! | TGATTAATGTTTTTGATATT+TGG | - | chr1_3:44706926-44706945 | Msa0120070:intron | 15.0% |
| !! | TATTGATACTATATATTCTT+AGG | + | chr1_3:44707140-44707159 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTTGTTTCTTTAA+CGG | - | chr1_3:44707486-44707505 | Msa0120070:intron | 15.0% |
| !!! | TTTTTAATGATAAATTCTTC+CGG | - | chr1_3:44707544-44707563 | Msa0120070:intron | 15.0% |
| !! | AAGAATTTCAATAAGTAAAA+AGG | - | chr1_3:44707617-44707636 | Msa0120070:intron | 15.0% |
| !! | TTATGTATTGAAATTTGATT+GGG | - | chr1_3:44708233-44708252 | Msa0120070:intron | 15.0% |
| !! | TTCATTAAATAATTAGATGA+TGG | - | chr1_3:44708330-44708349 | Msa0120070:intron | 15.0% |
| !! | AAATATTTCTCACAAAATTA+TGG | - | chr1_3:44708452-44708471 | Msa0120070:intron | 15.0% |
| !!! | TAATTATTTTTCATTCCTTT+TGG | + | chr1_3:44709038-44709057 | None:intergenic | 15.0% |
| !! | AAAAAAATGAATCTCTAAAT+CGG | + | chr1_3:44709213-44709232 | None:intergenic | 15.0% |
| !! | AAAATAACAATAGAATGATT+AGG | - | chr1_3:44709406-44709425 | Msa0120070:intron | 15.0% |
| !! | AAATAACAATAGAATGATTA+GGG | - | chr1_3:44709407-44709426 | Msa0120070:intron | 15.0% |
| !!! | TGCAAAAAACTAAATATTTT+TGG | - | chr1_3:44709490-44709509 | Msa0120070:intron | 15.0% |
| !!! | TTGAAAAATGATTTTCTTAA+AGG | + | chr1_3:44710535-44710554 | None:intergenic | 15.0% |
| !!! | AATAATTTTTCATGTCATTT+AGG | - | chr1_3:44710566-44710585 | Msa0120070:intron | 15.0% |
| !!! | TTTTTTTTCTTTGTATAATG+TGG | - | chr1_3:44710950-44710969 | Msa0120070:intron | 15.0% |
| !!! | TTTTTTTCTTTGTATAATGT+GGG | - | chr1_3:44710951-44710970 | Msa0120070:intron | 15.0% |
| !! | CAAATATTAAAACTTTCATA+TGG | + | chr1_3:44711183-44711202 | None:intergenic | 15.0% |
| !!! | TATGAAAGTTTTAATATTTG+TGG | - | chr1_3:44711183-44711202 | Msa0120070:intron | 15.0% |
| !! | AATCTTTAACAAAACAAATT+TGG | + | chr1_3:44711369-44711388 | None:intergenic | 15.0% |
| !! | TATATGTATATTTGATTCTA+AGG | - | chr1_3:44711400-44711419 | Msa0120070:intron | 15.0% |
| !! | ATATGTATATTTGATTCTAA+GGG | - | chr1_3:44711401-44711420 | Msa0120070:intron | 15.0% |
| !! | TTAGATAGAAATAGAATATA+AGG | - | chr1_3:44711539-44711558 | Msa0120070:intron | 15.0% |
| !! | TAGATAGAAATAGAATATAA+GGG | - | chr1_3:44711540-44711559 | Msa0120070:intron | 15.0% |
| !!! | AGTTGATTTTATTTTTCTTA+AGG | + | chr1_3:44711681-44711700 | None:intergenic | 15.0% |
| !!! | TTACGATATCTAAGATAATA+AGG | + | chr1_3:44706376-44706395 | None:intergenic | 20.0% |
| !!! | AACTGTGTTTATGAAATTTT+AGG | - | chr1_3:44706549-44706568 | Msa0120070:intron | 20.0% |
| !! | AATTAAATACTAGGTAACTT+AGG | + | chr1_3:44706818-44706837 | None:intergenic | 20.0% |
| !! | TTATATTCATATTGCCATAT+TGG | + | chr1_3:44706966-44706985 | None:intergenic | 20.0% |
| !! | TGAAAATTAAAACTAGAGAA+TGG | + | chr1_3:44706995-44707014 | None:intergenic | 20.0% |
| !!! | ACACTTTATCTTTTTTCTTT+TGG | - | chr1_3:44707275-44707294 | Msa0120070:intron | 20.0% |
| !!! | TCAATGAGTCTTTTTTTTTA+AGG | + | chr1_3:44707374-44707393 | None:intergenic | 20.0% |
| !! | ATTTCAATAAGTAAAAAGGT+AGG | - | chr1_3:44707621-44707640 | Msa0120070:intron | 20.0% |
| !!! | CATTTTAGATGAAATTTGTT+AGG | - | chr1_3:44708116-44708135 | Msa0120070:intron | 20.0% |
| !! | CTTATGTATTGAAATTTGAT+TGG | - | chr1_3:44708232-44708251 | Msa0120070:intron | 20.0% |
| !!! | TGAAACTACAGATATTTTTA+AGG | + | chr1_3:44708403-44708422 | None:intergenic | 20.0% |
| !!! | ATATTGAATGGATTCTTTAA+AGG | - | chr1_3:44708758-44708777 | Msa0120070:intron | 20.0% |
| !!! | ACGACTTTTTTTTTTTAACA+AGG | - | chr1_3:44708823-44708842 | Msa0120070:intron | 20.0% |
| !! | AAAAAAACATTAATGACTAG+TGG | - | chr1_3:44709134-44709153 | Msa0120070:intron | 20.0% |
| !! | TTTAGCAACATTACAAAAAT+CGG | - | chr1_3:44709157-44709176 | Msa0120070:intron | 20.0% |
| !!! | GGATTATTTTGCAATAATTT+TGG | - | chr1_3:44709317-44709336 | Msa0120070:intron | 20.0% |
| !!! | TATTTTGCAATAATTTTGGT+TGG | - | chr1_3:44709321-44709340 | Msa0120070:intron | 20.0% |
| !! | AATAACAATAGAATGATTAG+GGG | - | chr1_3:44709408-44709427 | Msa0120070:intron | 20.0% |
| !!! | TAAATATTTTTGGATGTGTT+TGG | - | chr1_3:44709500-44709519 | Msa0120070:intron | 20.0% |
| !! | CAAATATATGCAGTTTAATT+TGG | + | chr1_3:44709841-44709860 | None:intergenic | 20.0% |
| !! | CAAATTAAACTGCATATATT+TGG | - | chr1_3:44709839-44709858 | Msa0120070:intron | 20.0% |
| !!! | ACATGATTTTTATTTTGGAT+CGG | - | chr1_3:44709915-44709934 | Msa0120070:intron | 20.0% |
| !!! | ACTTGTTCTAAAATTTAGAA+AGG | + | chr1_3:44710000-44710019 | None:intergenic | 20.0% |
| !! | GTGACATTAAAATTAGATTT+AGG | - | chr1_3:44710421-44710440 | Msa0120070:intron | 20.0% |
| !!! | GATTTTCTTAAAGGTTAAAA+TGG | + | chr1_3:44710526-44710545 | None:intergenic | 20.0% |
| !!! | ATTAAATTTCTTTTCACCTT+AGG | - | chr1_3:44711027-44711046 | Msa0120070:intron | 20.0% |
| !! | TATGTATATTTGATTCTAAG+GGG | - | chr1_3:44711402-44711421 | Msa0120070:intron | 20.0% |
| !!! | TTTTCAAGATAGTTAAAGTA+AGG | + | chr1_3:44711743-44711762 | None:intergenic | 20.0% |
| !! | ATCAAAATTAGATGACTTAT+TGG | + | chr1_3:44711853-44711872 | None:intergenic | 20.0% |
| !!! | TACTTGTCATTTCTAAAAAA+TGG | - | chr1_3:44711929-44711948 | Msa0120070:intron | 20.0% |
| !! | TAATAATAAGTGAAGTTGTT+TGG | + | chr1_3:44712139-44712158 | None:intergenic | 20.0% |
| !!! | TGATTCTTGAATATCAATTT+TGG | + | chr1_3:44712324-44712343 | None:intergenic | 20.0% |
| !!! | GATGTATTTAATTCAACTTT+TGG | + | chr1_3:44712959-44712978 | None:intergenic | 20.0% |
| !!! | TTAGTTATGATTTTTCTTTG+TGG | - | chr1_3:44713072-44713091 | Msa0120070:intron | 20.0% |
| !!! | CAGGTTTTTTGTTATTTCAA+TGG | - | chr1_3:44706265-44706284 | Msa0120070:intron | 25.0% |
| !!! | GAAGCATTGAAAATTAAGAT+TGG | - | chr1_3:44706777-44706796 | Msa0120070:intron | 25.0% |
| ! | AGTTACCTAGTATTTAATTG+TGG | - | chr1_3:44706819-44706838 | Msa0120070:CDS | 25.0% |
| !!! | TTGATTCCTTGTATTGATTT+TGG | - | chr1_3:44706876-44706895 | Msa0120070:CDS | 25.0% |
| !!! | TGATTCCTTGTATTGATTTT+GGG | - | chr1_3:44706877-44706896 | Msa0120070:CDS | 25.0% |
| ! | AATTTCCCAAAATCAATACA+AGG | + | chr1_3:44706885-44706904 | None:intergenic | 25.0% |
| !!! | ATTTTGGGAAATTGTTGTTA+TGG | - | chr1_3:44706892-44706911 | Msa0120070:CDS | 25.0% |
| !!! | AAGTTTTAGTTTAGCCAATA+TGG | - | chr1_3:44706949-44706968 | Msa0120070:intron | 25.0% |
| !! | TTCTTAGGAGATATGAATTT+TGG | + | chr1_3:44707125-44707144 | None:intergenic | 25.0% |
| ! | TTGGAGTTAGTATTAATTAG+TGG | - | chr1_3:44707305-44707324 | Msa0120070:intron | 25.0% |
| ! | AATAACTGGGTAATATACAA+CGG | - | chr1_3:44707807-44707826 | Msa0120070:intron | 25.0% |
| !!! | AGACTTTTTTTTTGACAAGT+TGG | + | chr1_3:44707972-44707991 | None:intergenic | 25.0% |
| !! | CATTATAGAGGAAATTTGTT+AGG | - | chr1_3:44708078-44708097 | Msa0120070:intron | 25.0% |
| !!! | AGGAAATTTGTTAGGTTAAT+TGG | - | chr1_3:44708086-44708105 | Msa0120070:intron | 25.0% |
| !!! | ATAGGTTTTTTATTGTGAGA+AGG | - | chr1_3:44708542-44708561 | Msa0120070:intron | 25.0% |
| !!! | AATCATTTTGGAACTAGAAA+TGG | - | chr1_3:44708596-44708615 | Msa0120070:intron | 25.0% |
| !! | TGATCACTTGTATACTTTTA+AGG | + | chr1_3:44708902-44708921 | None:intergenic | 25.0% |
| !! | GTCTAAATTTTCATATGTAG+TGG | + | chr1_3:44708987-44709006 | None:intergenic | 25.0% |
| !!! | TTATTTTTCATTCCTTTTGG+TGG | + | chr1_3:44709035-44709054 | None:intergenic | 25.0% |
| !!! | TTTGCAGTTTTATTTTGGAT+CGG | + | chr1_3:44709448-44709467 | None:intergenic | 25.0% |
| !!! | ATCGATTTGCAGTTTTATTT+TGG | + | chr1_3:44709453-44709472 | None:intergenic | 25.0% |
| !! | TTTGCAGTTTTCAGTTTTTT+TGG | + | chr1_3:44709476-44709495 | None:intergenic | 25.0% |
| !!! | TAAAATCTACTTTTGCGATT+CGG | + | chr1_3:44709593-44709612 | None:intergenic | 25.0% |
| ! | AAAAATTACATGTTGCACTT+TGG | - | chr1_3:44709799-44709818 | Msa0120070:intron | 25.0% |
| !!! | ATATGCAGTTTAATTTGGAA+CGG | + | chr1_3:44709836-44709855 | None:intergenic | 25.0% |
| ! | TAAACTGCATATATTTGGAT+CGG | - | chr1_3:44709844-44709863 | Msa0120070:intron | 25.0% |
| ! | TCCAAAATAAAAATCATGTG+CGG | + | chr1_3:44709914-44709933 | None:intergenic | 25.0% |
| !! | ATAAATGGATTTCTTTGTCA+GGG | + | chr1_3:44710206-44710225 | None:intergenic | 25.0% |
| !! | AATAAATGGATTTCTTTGTC+AGG | + | chr1_3:44710207-44710226 | None:intergenic | 25.0% |
| ! | CTATGACGACTAAAATAATT+TGG | - | chr1_3:44710232-44710251 | Msa0120070:intron | 25.0% |
| ! | TACCATGCTTAAAAAAATGT+CGG | - | chr1_3:44710292-44710311 | Msa0120070:intron | 25.0% |
| ! | TGAGTAAATGAGGTTTATAT+AGG | + | chr1_3:44710817-44710836 | None:intergenic | 25.0% |
| !! | CAAAGGATCAAAAAAGTTTT+CGG | + | chr1_3:44710895-44710914 | None:intergenic | 25.0% |
| ! | TCTAGATTTGATTAGATTGA+AGG | - | chr1_3:44710974-44710993 | Msa0120070:intron | 25.0% |
| !!! | TCTGAATTTTTAGGGTTTTT+AGG | - | chr1_3:44711051-44711070 | Msa0120070:intron | 25.0% |
| !!! | TGAGGTCTTAAAGTTTTAAA+AGG | - | chr1_3:44711077-44711096 | Msa0120070:intron | 25.0% |
| !!! | GAGGTCTTAAAGTTTTAAAA+GGG | - | chr1_3:44711078-44711097 | Msa0120070:intron | 25.0% |
| ! | AATCTCTAATCTTCAATTTC+CGG | + | chr1_3:44711113-44711132 | None:intergenic | 25.0% |
| ! | AAATTGAAGATTAGAGATTG+AGG | - | chr1_3:44711114-44711133 | Msa0120070:intron | 25.0% |
| ! | AATTGAAGATTAGAGATTGA+GGG | - | chr1_3:44711115-44711134 | Msa0120070:intron | 25.0% |
| ! | TTGATTGCGACAAATATTTA+CGG | - | chr1_3:44711211-44711230 | Msa0120070:intron | 25.0% |
| !! | ATGTATATTTGATTCTAAGG+GGG | - | chr1_3:44711403-44711422 | Msa0120070:intron | 25.0% |
| ! | AGTTTAACCCAAAAGTTATA+GGG | + | chr1_3:44711443-44711462 | None:intergenic | 25.0% |
| ! | AAGTTTAACCCAAAAGTTAT+AGG | + | chr1_3:44711444-44711463 | None:intergenic | 25.0% |
| !!! | TATAACTTTTGGGTTAAACT+TGG | - | chr1_3:44711443-44711462 | Msa0120070:intron | 25.0% |
| !!! | ATAACTTTTGGGTTAAACTT+GGG | - | chr1_3:44711444-44711463 | Msa0120070:intron | 25.0% |
| ! | ACTAAGAAGAAAAAGTAAAC+CGG | - | chr1_3:44711706-44711725 | Msa0120070:intron | 25.0% |
| !! | TTTGTGACATTTTATGTTGT+AGG | + | chr1_3:44711818-44711837 | None:intergenic | 25.0% |
| !! | ATGACAAGTATTGTTGATAT+TGG | + | chr1_3:44711919-44711938 | None:intergenic | 25.0% |
| ! | AGCTTATATATAGAGATTAG+AGG | + | chr1_3:44712184-44712203 | None:intergenic | 25.0% |
| ! | GATTAATACATTTGCATCAT+TGG | - | chr1_3:44712209-44712228 | Msa0120070:intron | 25.0% |
| !! | GAAGCTAATTATATTTTCAG+AGG | + | chr1_3:44712274-44712293 | None:intergenic | 25.0% |
| !!! | TCAATTTTGGTTGACATTTT+TGG | + | chr1_3:44712311-44712330 | None:intergenic | 25.0% |
| ! | CCTTAAAATGAAATCCATTA+TGG | + | chr1_3:44712420-44712439 | None:intergenic | 25.0% |
| !!! | CCATAATGGATTTCATTTTA+AGG | - | chr1_3:44712417-44712436 | Msa0120070:intron | 25.0% |
| !!! | ATGGATTTCATTTTAAGGTT+AGG | - | chr1_3:44712422-44712441 | Msa0120070:intron | 25.0% |
| ! | TTCTAAGTCACATATAAGAT+CGG | - | chr1_3:44712596-44712615 | Msa0120070:CDS | 25.0% |
| !! | TCTAAACTTATATTTGAGAC+TGG | + | chr1_3:44712912-44712931 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATGTATT+TGG | - | chr1_3:44712932-44712951 | Msa0120070:intron | 25.0% |
| ! | TGTTAATGTTGCTTGATTCT+GGG | + | chr1_3:44705965-44705984 | None:intergenic | 30.0% |
| ! | TTGTTAATGTTGCTTGATTC+TGG | + | chr1_3:44705966-44705985 | None:intergenic | 30.0% |
| AGAATCAAGCAACATTAACA+AGG | - | chr1_3:44705965-44705984 | Msa0120070:CDS | 30.0% | |
| CCTTAGAATGAAATCCATTA+TGG | + | chr1_3:44706045-44706064 | None:intergenic | 30.0% | |
| !! | CCATAATGGATTTCATTCTA+AGG | - | chr1_3:44706042-44706061 | Msa0120070:CDS | 30.0% |
| !! | ATGGATTTCATTCTAAGGTT+AGG | - | chr1_3:44706047-44706066 | Msa0120070:CDS | 30.0% |
| GAAAGAACTGAGTGAAAAAA+GGG | + | chr1_3:44706130-44706149 | None:intergenic | 30.0% | |
| TGAAAGAACTGAGTGAAAAA+AGG | + | chr1_3:44706131-44706150 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGAGTGTTACATAC+TGG | + | chr1_3:44706187-44706206 | None:intergenic | 30.0% |
| AAGATAATAAGGAAAAGCCT+TGG | + | chr1_3:44706365-44706384 | None:intergenic | 30.0% | |
| TAAAAATATGATAAGGGGTG+CGG | - | chr1_3:44706453-44706472 | Msa0120070:CDS | 30.0% | |
| !! | ATTTTAGGTGTTTCTTACTC+TGG | - | chr1_3:44706564-44706583 | Msa0120070:intron | 30.0% |
| AGTTGCATCATTTATTACTG+TGG | - | chr1_3:44706711-44706730 | Msa0120070:intron | 30.0% | |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1_3:44706729-44706748 | Msa0120070:intron | 30.0% |
| TCAAGCACTTAATAACATGA+GGG | + | chr1_3:44707023-44707042 | None:intergenic | 30.0% | |
| ATCAAGCACTTAATAACATG+AGG | + | chr1_3:44707024-44707043 | None:intergenic | 30.0% | |
| TCATGTTATTAAGTGCTTGA+TGG | - | chr1_3:44707023-44707042 | Msa0120070:intron | 30.0% | |
| ACATGACAACTTTACATGAA+AGG | - | chr1_3:44707179-44707198 | Msa0120070:intron | 30.0% | |
| GAAGAAGAAATGATAGAATG+AGG | + | chr1_3:44707250-44707269 | None:intergenic | 30.0% | |
| ! | TTTTTCTTTTGGCAGAAGTT+TGG | - | chr1_3:44707286-44707305 | Msa0120070:intron | 30.0% |
| TCTTATTGAGCAACCTTTAA+GGG | + | chr1_3:44707339-44707358 | None:intergenic | 30.0% | |
| TTAATGATAAATTCTTCCGG+TGG | - | chr1_3:44707547-44707566 | Msa0120070:intron | 30.0% | |
| TAATGATAAATTCTTCCGGT+GGG | - | chr1_3:44707548-44707567 | Msa0120070:intron | 30.0% | |
| TATATGGTGAGATGAATAAC+TGG | - | chr1_3:44707793-44707812 | Msa0120070:intron | 30.0% | |
| ATATGGTGAGATGAATAACT+GGG | - | chr1_3:44707794-44707813 | Msa0120070:intron | 30.0% | |
| TATATAAACGATGACTCAAC+AGG | - | chr1_3:44708008-44708027 | Msa0120070:intron | 30.0% | |
| TAGGGATTACTACATTATAG+AGG | - | chr1_3:44708066-44708085 | Msa0120070:intron | 30.0% | |
| CAAATGAGCAGGAAAATATT+AGG | - | chr1_3:44708164-44708183 | Msa0120070:intron | 30.0% | |
| AGTTTCAATTTAGCTATGCT+TGG | - | chr1_3:44708416-44708435 | Msa0120070:intron | 30.0% | |
| ! | CAAAATTATGGCGATTTTGT+TGG | - | chr1_3:44708464-44708483 | Msa0120070:intron | 30.0% |
| ! | GCTATGTTTGAAGTAGAATA+TGG | - | chr1_3:44708514-44708533 | Msa0120070:intron | 30.0% |
| AAGTAGAATATGGTCTACAT+AGG | - | chr1_3:44708524-44708543 | Msa0120070:intron | 30.0% | |
| TTTGAATCCACTTTAATGCT+TGG | - | chr1_3:44708785-44708804 | Msa0120070:intron | 30.0% | |
| !!! | TTCTGAAGTAACGGTTATTT+TGG | - | chr1_3:44709372-44709391 | Msa0120070:intron | 30.0% |
| !!! | AGTTTTATTTTGGATCGGTT+TGG | + | chr1_3:44709443-44709462 | None:intergenic | 30.0% |
| !!! | GTTTAATTTGGAACGGTTTT+TGG | + | chr1_3:44709829-44709848 | None:intergenic | 30.0% |
| AATAAAAATCATGTGCGGTT+CGG | + | chr1_3:44709909-44709928 | None:intergenic | 30.0% | |
| !! | ACCGCACATGATTTTTATTT+TGG | - | chr1_3:44709910-44709929 | Msa0120070:intron | 30.0% |
| TAGAAAGGTGATCATTCTTA+GGG | + | chr1_3:44709985-44710004 | None:intergenic | 30.0% | |
| TTAGAAAGGTGATCATTCTT+AGG | + | chr1_3:44709986-44710005 | None:intergenic | 30.0% | |
| TTGATTCCTCTATACATGAA+AGG | - | chr1_3:44710096-44710115 | Msa0120070:intron | 30.0% | |
| TGATTATGAAATACAAGTCG+TGG | + | chr1_3:44710126-44710145 | None:intergenic | 30.0% | |
| TGTTAGTATGAATCTAGAAG+TGG | + | chr1_3:44710320-44710339 | None:intergenic | 30.0% | |
| TAGATTCATACTAACAACCA+TGG | - | chr1_3:44710324-44710343 | Msa0120070:intron | 30.0% | |
| TGAGTATTTCTCAATGTCTT+AGG | - | chr1_3:44710449-44710468 | Msa0120070:intron | 30.0% | |
| ! | CTTTGAATCATCTTCTGAAA+AGG | - | chr1_3:44710619-44710638 | Msa0120070:intron | 30.0% |
| !! | TCAATTTTAACGGAGTGATT+TGG | + | chr1_3:44710715-44710734 | None:intergenic | 30.0% |
| ! | ATCACCCAAGTCAATTTTAA+CGG | + | chr1_3:44710725-44710744 | None:intergenic | 30.0% |
| AATGAGGTTTATATAGGAAG+TGG | + | chr1_3:44710811-44710830 | None:intergenic | 30.0% | |
| ! | TCAAAAAAGTTTTCGGTGAA+AGG | + | chr1_3:44710888-44710907 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGATCCTTTGATG+TGG | - | chr1_3:44710898-44710917 | Msa0120070:intron | 30.0% |
| !!! | CTTTTTTGATCCTTTGATGT+GGG | - | chr1_3:44710899-44710918 | Msa0120070:intron | 30.0% |
| ! | TTCAATAGCATATAGGTTGA+AGG | - | chr1_3:44710999-44711018 | Msa0120070:intron | 30.0% |
| ! | ACCTTAGGATCTGAATTTTT+AGG | - | chr1_3:44711042-44711061 | Msa0120070:intron | 30.0% |
| ! | CCTTAGGATCTGAATTTTTA+GGG | - | chr1_3:44711043-44711062 | Msa0120070:intron | 30.0% |
| TTTAAAAGGGCTAAATTGAC+CGG | - | chr1_3:44711091-44711110 | Msa0120070:intron | 30.0% | |
| !! | GCATTGATTCATAAGTAGTT+AGG | - | chr1_3:44711233-44711252 | Msa0120070:intron | 30.0% |
| TTCATAAGTAGTTAGGATCA+TGG | - | chr1_3:44711240-44711259 | Msa0120070:intron | 30.0% | |
| !! | TTCTATTTCTATCTAACCCT+TGG | + | chr1_3:44711535-44711554 | None:intergenic | 30.0% |
| AATATGCAAAGTCTCATCTA+GGG | + | chr1_3:44711611-44711630 | None:intergenic | 30.0% | |
| TAATATGCAAAGTCTCATCT+AGG | + | chr1_3:44711612-44711631 | None:intergenic | 30.0% | |
| CTAAGAAGAAAAAGTAAACC+GGG | - | chr1_3:44711707-44711726 | Msa0120070:intron | 30.0% | |
| ! | TTCTAAAAAATGGTACCACA+AGG | - | chr1_3:44711939-44711958 | Msa0120070:intron | 30.0% |
| !! | GACTAAAATTGATTTTCCCT+CGG | - | chr1_3:44711972-44711991 | Msa0120070:intron | 30.0% |
| !! | ACTAAAATTGATTTTCCCTC+GGG | - | chr1_3:44711973-44711992 | Msa0120070:intron | 30.0% |
| TATATAGAGATTAGAGGACA+GGG | + | chr1_3:44712178-44712197 | None:intergenic | 30.0% | |
| ATATATAGAGATTAGAGGAC+AGG | + | chr1_3:44712179-44712198 | None:intergenic | 30.0% | |
| GAATCAAGCAAAGATACTAA+AGG | - | chr1_3:44712338-44712357 | Msa0120070:intron | 30.0% | |
| ! | TACTAAAGGAAAAGCTGTTT+TGG | - | chr1_3:44712352-44712371 | Msa0120070:intron | 30.0% |
| !!! | GAGTTTTGAATGTTACATAC+TGG | + | chr1_3:44712562-44712581 | None:intergenic | 30.0% |
| ACTTAATGCTTGAAAAATGC+AGG | - | chr1_3:44712697-44712716 | Msa0120070:intron | 30.0% | |
| !!! | CAGGTTTTTTCTTATTGCAA+TGG | - | chr1_3:44712716-44712735 | Msa0120070:intron | 30.0% |
| ATGATGGCTACTATAGAAAA+AGG | + | chr1_3:44712774-44712793 | None:intergenic | 30.0% | |
| ACTCTTCTTGATCATTTCTT+TGG | - | chr1_3:44712863-44712882 | Msa0120070:intron | 30.0% | |
| ! | AACTTATATTTGAGACTGGA+GGG | + | chr1_3:44712908-44712927 | None:intergenic | 30.0% |
| ! | AAACTTATATTTGAGACTGG+AGG | + | chr1_3:44712909-44712928 | None:intergenic | 30.0% |
| TAGATGTTTACTACTCTCTT+CGG | + | chr1_3:44713018-44713037 | None:intergenic | 30.0% | |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1_3:44706729-44706748 | Msa0120070:intron | 30.0% |
| TTTGAGTGTTACATACTGGA+AGG | + | chr1_3:44706183-44706202 | None:intergenic | 35.0% | |
| GCTAATACTTGAAACAATGC+AGG | - | chr1_3:44706246-44706265 | Msa0120070:intron | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1_3:44706617-44706636 | None:intergenic | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1_3:44706616-44706635 | Msa0120070:intron | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1_3:44706635-44706654 | Msa0120070:intron | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1_3:44706665-44706684 | None:intergenic | 35.0% | |
| CCTCACCACAATTAAATACT+AGG | + | chr1_3:44706827-44706846 | None:intergenic | 35.0% | |
| CCTAGTATTTAATTGTGGTG+AGG | - | chr1_3:44706824-44706843 | Msa0120070:CDS | 35.0% | |
| TGATGGAAGTTTATCCATCA+TGG | - | chr1_3:44707040-44707059 | Msa0120070:intron | 35.0% | |
| ATAGTGTCTTTCAACCATGA+TGG | + | chr1_3:44707057-44707076 | None:intergenic | 35.0% | |
| ! | GTCTTATTGAGCAACCTTTA+AGG | + | chr1_3:44707340-44707359 | None:intergenic | 35.0% |
| AATGATAAATTCTTCCGGTG+GGG | - | chr1_3:44707549-44707568 | Msa0120070:intron | 35.0% | |
| TGGGTAATATACAACGGTTT+AGG | - | chr1_3:44707813-44707832 | Msa0120070:intron | 35.0% | |
| TATATATAGCCGAGTTTGCA+TGG | - | chr1_3:44707877-44707896 | Msa0120070:intron | 35.0% | |
| ATCAGTGGGGAGAAATATTA+GGG | - | chr1_3:44708048-44708067 | Msa0120070:intron | 35.0% | |
| ACCTAATACATCAAATGAGC+AGG | - | chr1_3:44708153-44708172 | Msa0120070:intron | 35.0% | |
| TCCTGCTCATTTGATGTATT+AGG | + | chr1_3:44708157-44708176 | None:intergenic | 35.0% | |
| AATACTCAACCAAACTTCAG+AGG | - | chr1_3:44708356-44708375 | Msa0120070:intron | 35.0% | |
| !! | TAAGTGATACCTCTGAAGTT+TGG | + | chr1_3:44708368-44708387 | None:intergenic | 35.0% |
| ! | TTTTATTGTGAGAAGGATGC+AGG | - | chr1_3:44708549-44708568 | Msa0120070:intron | 35.0% |
| TTTATTGTGAGAAGGATGCA+GGG | - | chr1_3:44708550-44708569 | Msa0120070:intron | 35.0% | |
| ! | AAAGGTGAGGACAATCATTT+TGG | - | chr1_3:44708584-44708603 | Msa0120070:intron | 35.0% |
| TGGAACTAGAAATGGTTAAG+TGG | - | chr1_3:44708604-44708623 | Msa0120070:intron | 35.0% | |
| GACATGTGTGATTAAGCATA+AGG | + | chr1_3:44708663-44708682 | None:intergenic | 35.0% | |
| TTAAGCACCAAGCATTAAAG+TGG | + | chr1_3:44708795-44708814 | None:intergenic | 35.0% | |
| ! | TAGCACACATTGTGCTATTA+AGG | + | chr1_3:44708872-44708891 | None:intergenic | 35.0% |
| AGTAGTCTTTATCCACCAAA+AGG | - | chr1_3:44709020-44709039 | Msa0120070:intron | 35.0% | |
| !!! | GCAATAATTTTGGTTGGAGT+TGG | - | chr1_3:44709327-44709346 | Msa0120070:intron | 35.0% |
| !! | GATGTGTTTGGATGTTGTTT+TGG | - | chr1_3:44709512-44709531 | Msa0120070:intron | 35.0% |
| TTTGGAAAAACCGCTATGAT+CGG | - | chr1_3:44709530-44709549 | Msa0120070:intron | 35.0% | |
| TGCATATATTTGGATCGGAT+CGG | - | chr1_3:44709849-44709868 | Msa0120070:intron | 35.0% | |
| AGAAAGGTGATCATTCTTAG+GGG | + | chr1_3:44709984-44710003 | None:intergenic | 35.0% | |
| !! | GCTCTTTAGTTCTGTGTTAT+CGG | + | chr1_3:44710074-44710093 | None:intergenic | 35.0% |
| GACATATTTGAGCTGATCTA+AGG | + | chr1_3:44710157-44710176 | None:intergenic | 35.0% | |
| TCGTCATAGCGATCAATAAA+TGG | + | chr1_3:44710221-44710240 | None:intergenic | 35.0% | |
| !!! | CTCCGACATTTTTTTAAGCA+TGG | + | chr1_3:44710297-44710316 | None:intergenic | 35.0% |
| ! | CATCTTCTGAAAAGGTGATT+TGG | - | chr1_3:44710627-44710646 | Msa0120070:intron | 35.0% |
| TCACTCCGTTAAAATTGACT+TGG | - | chr1_3:44710717-44710736 | Msa0120070:intron | 35.0% | |
| ! | CACTCCGTTAAAATTGACTT+GGG | - | chr1_3:44710718-44710737 | Msa0120070:intron | 35.0% |
| CCTCAATGAATGAGTAAATG+AGG | + | chr1_3:44710827-44710846 | None:intergenic | 35.0% | |
| CCTCATTTACTCATTCATTG+AGG | - | chr1_3:44710824-44710843 | Msa0120070:intron | 35.0% | |
| !! | GAAGGTGTTCAATAGCATAT+AGG | - | chr1_3:44710992-44711011 | Msa0120070:intron | 35.0% |
| CCCTAAAAATTCAGATCCTA+AGG | + | chr1_3:44711046-44711065 | None:intergenic | 35.0% | |
| !!! | TTTAGGGTTTTTAGGTTGTG+AGG | - | chr1_3:44711059-44711078 | Msa0120070:intron | 35.0% |
| ! | AGTTAGGATCATGGTATTGA+AGG | - | chr1_3:44711249-44711268 | Msa0120070:intron | 35.0% |
| AAGTTGGAGAAAAGGAGAAA+AGG | + | chr1_3:44711503-44711522 | None:intergenic | 35.0% | |
| AAGCATCCAATAGAGTGTAA+TGG | - | chr1_3:44712001-44712020 | Msa0120070:intron | 35.0% | |
| CCTAATCCATTACACTCTAT+TGG | + | chr1_3:44712010-44712029 | None:intergenic | 35.0% | |
| !! | CCAATAGAGTGTAATGGATT+AGG | - | chr1_3:44712007-44712026 | Msa0120070:intron | 35.0% |
| AATGTTACATACTGGAATGC+AGG | + | chr1_3:44712554-44712573 | None:intergenic | 35.0% | |
| TCTTATTGCAATGGCAATAG+TGG | - | chr1_3:44712725-44712744 | Msa0120070:intron | 35.0% | |
| ! | ACTTATATTTGAGACTGGAG+GGG | + | chr1_3:44712907-44712926 | None:intergenic | 35.0% |
| TTTGTGGTGCTTATAATTGC+AGG | - | chr1_3:44713088-44713107 | Msa0120070:CDS | 35.0% | |
| ATTGCAGGTATTTCTTACAC+TGG | - | chr1_3:44713103-44713122 | Msa0120070:CDS | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1_3:44706617-44706636 | None:intergenic | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1_3:44706616-44706635 | Msa0120070:intron | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1_3:44706635-44706654 | Msa0120070:intron | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1_3:44706665-44706684 | None:intergenic | 35.0% | |
| TGTGGCATCATTTATTACTG+TGG | - | chr1_3:44713250-44713269 | Msa0120070:CDS | 35.0% | |
| ! | CAATTCTAGTTGCACCTACA+AGG | - | chr1_3:44705994-44706013 | Msa0120070:CDS | 40.0% |
| GAAAAAGGGAACAGCCATAA+TGG | - | chr1_3:44706028-44706047 | Msa0120070:CDS | 40.0% | |
| TGGTAGGGATAGAACTAAGT+AGG | + | chr1_3:44706303-44706322 | None:intergenic | 40.0% | |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1_3:44706606-44706625 | Msa0120070:intron | 40.0% | |
| CTAGCCATTTGCAACCAATT+TGG | - | chr1_3:44706658-44706677 | Msa0120070:intron | 40.0% | |
| GTGCACAGAAATCTCCAAAT+TGG | + | chr1_3:44706675-44706694 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTCATCGTGTTGTG+AGG | + | chr1_3:44707108-44707127 | None:intergenic | 40.0% |
| !! | AGTGGATTATCCACCCTTAA+AGG | - | chr1_3:44707323-44707342 | Msa0120070:intron | 40.0% |
| ! | TATTGAGCAACCTTTAAGGG+TGG | + | chr1_3:44707336-44707355 | None:intergenic | 40.0% |
| ! | TTTCTTTAACGGATGCCTCA+GGG | - | chr1_3:44707497-44707516 | Msa0120070:intron | 40.0% |
| ATGCTAACTTAATGTCCCTG+AGG | + | chr1_3:44707515-44707534 | None:intergenic | 40.0% | |
| CTAATGCAAGTGGGATTCAT+TGG | - | chr1_3:44707583-44707602 | Msa0120070:intron | 40.0% | |
| !! | AACAGACTAGTTTAGAGACC+CGG | - | chr1_3:44707660-44707679 | Msa0120070:intron | 40.0% |
| CCCTAATTTCCATGCAAACT+CGG | + | chr1_3:44707889-44707908 | None:intergenic | 40.0% | |
| CCGAGTTTGCATGGAAATTA+GGG | - | chr1_3:44707886-44707905 | Msa0120070:intron | 40.0% | |
| CCCTAATTTCCATGCAAACT+CGG | + | chr1_3:44707889-44707908 | None:intergenic | 40.0% | |
| CCGAGTTTGCATGGAAATTA+GGG | - | chr1_3:44707886-44707905 | Msa0120070:intron | 40.0% | |
| AAACGATGACTCAACAGGAT+AGG | - | chr1_3:44708013-44708032 | Msa0120070:intron | 40.0% | |
| AGGAATGAAAAGCTCATCAG+TGG | - | chr1_3:44708033-44708052 | Msa0120070:intron | 40.0% | |
| GGAATGAAAAGCTCATCAGT+GGG | - | chr1_3:44708034-44708053 | Msa0120070:intron | 40.0% | |
| GAATGAAAAGCTCATCAGTG+GGG | - | chr1_3:44708035-44708054 | Msa0120070:intron | 40.0% | |
| CATCAGTGGGGAGAAATATT+AGG | - | chr1_3:44708047-44708066 | Msa0120070:intron | 40.0% | |
| ! | ATAAGGTGCTTATCCACTAG+AGG | + | chr1_3:44708646-44708665 | None:intergenic | 40.0% |
| ATTTATCAGAGCAACTCCAG+CGG | - | chr1_3:44709252-44709271 | Msa0120070:intron | 40.0% | |
| CATTGAAAACTTGAAACCGC+TGG | + | chr1_3:44709271-44709290 | None:intergenic | 40.0% | |
| !!! | CAGCGGTTTCAAGTTTTCAA+TGG | - | chr1_3:44709269-44709288 | Msa0120070:intron | 40.0% |
| ! | GTTTTCAATGGTCCATCAAG+TGG | - | chr1_3:44709281-44709300 | Msa0120070:intron | 40.0% |
| !!! | CTTTTTCGATCTCCACTTGA+TGG | + | chr1_3:44709296-44709315 | None:intergenic | 40.0% |
| TCAAGTGGAGATCGAAAAAG+TGG | - | chr1_3:44709296-44709315 | Msa0120070:intron | 40.0% | |
| AAGCAGCGATTATTACACGT+TGG | + | chr1_3:44709353-44709372 | None:intergenic | 40.0% | |
| !! | ATCGCTGCTTTCTGAAGTAA+CGG | - | chr1_3:44709363-44709382 | Msa0120070:intron | 40.0% |
| GAAATCTGATCCGATCATAG+CGG | + | chr1_3:44709543-44709562 | None:intergenic | 40.0% | |
| GCTATGATCGGATCAGATTT+CGG | - | chr1_3:44709542-44709561 | Msa0120070:intron | 40.0% | |
| !! | GGTTTGGTTCGGTTATGAAA+AGG | + | chr1_3:44709572-44709591 | None:intergenic | 40.0% |
| !!! | TTTTGCGATTCGGTTTGGTT+CGG | + | chr1_3:44709583-44709602 | None:intergenic | 40.0% |
| !!! | TCTACTTTTGCGATTCGGTT+TGG | + | chr1_3:44709588-44709607 | None:intergenic | 40.0% |
| GGTGATCCTTTCATGTATAG+AGG | + | chr1_3:44710105-44710124 | None:intergenic | 40.0% | |
| !! | AAGGTAGGTGCATTGATTTG+AGG | + | chr1_3:44710179-44710198 | None:intergenic | 40.0% |
| ! | AAGGTGATTTGGATCATGCT+AGG | - | chr1_3:44710638-44710657 | Msa0120070:intron | 40.0% |
| ! | AGGTGATTTGGATCATGCTA+GGG | - | chr1_3:44710639-44710658 | Msa0120070:intron | 40.0% |
| ! | TTTTGATCCTTTGATGTGGG+TGG | - | chr1_3:44710902-44710921 | Msa0120070:intron | 40.0% |
| ACAATTACCACCCACATCAA+AGG | + | chr1_3:44710912-44710931 | None:intergenic | 40.0% | |
| GGTCCACATATAACATCAGT+GGG | - | chr1_3:44711465-44711484 | Msa0120070:intron | 40.0% | |
| CAACCCACTGATGTTATATG+TGG | + | chr1_3:44711471-44711490 | None:intergenic | 40.0% | |
| !! | ATAACATCAGTGGGTTGAGT+AGG | - | chr1_3:44711474-44711493 | Msa0120070:intron | 40.0% |
| ! | AAGTAAGGATTGAGTTGTCC+CGG | + | chr1_3:44711728-44711747 | None:intergenic | 40.0% |
| !! | GTGTAATGGATTAGGCTACA+TGG | - | chr1_3:44712015-44712034 | Msa0120070:intron | 40.0% |
| ! | AGGCTACATGGTTTAGTTCA+TGG | - | chr1_3:44712027-44712046 | Msa0120070:intron | 40.0% |
| ! | GAAAAAGGGCATAGCCATAA+TGG | - | chr1_3:44712403-44712422 | Msa0120070:intron | 40.0% |
| AGGATGATGAGAAAAAGCCT+TGG | + | chr1_3:44712816-44712835 | None:intergenic | 40.0% | |
| ACTGAGATCTTACAGTGTCT+AGG | + | chr1_3:44712836-44712855 | None:intergenic | 40.0% | |
| ! | CTTATATTTGAGACTGGAGG+GGG | + | chr1_3:44712906-44712925 | None:intergenic | 40.0% |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1_3:44706606-44706625 | Msa0120070:intron | 40.0% | |
| CTAGCCATTTGCAACCAATT+TGG | - | chr1_3:44706658-44706677 | Msa0120070:intron | 40.0% | |
| GTGCACAGAAATCTCCAAAT+TGG | + | chr1_3:44706675-44706694 | None:intergenic | 40.0% | |
| TGATGTCTGCTTTGGCTATT+GGG | - | chr1_3:44713294-44713313 | Msa0120070:CDS | 40.0% | |
| !! | GCTTGATTCTGGGACATCAA+TGG | + | chr1_3:44705955-44705974 | None:intergenic | 45.0% |
| ATCACTTGTTCCCATTGAGG+CGG | + | chr1_3:44706099-44706118 | None:intergenic | 45.0% | |
| CTGATCACTTGTTCCCATTG+AGG | + | chr1_3:44706102-44706121 | None:intergenic | 45.0% | |
| ATGATGGCTACGACAGAGAA+TGG | + | chr1_3:44706323-44706342 | None:intergenic | 45.0% | |
| ATAAGGAAAAGCCTTGGTCC+AGG | + | chr1_3:44706359-44706378 | None:intergenic | 45.0% | |
| GATTTCTGTGCACAGACAAG+TGG | - | chr1_3:44706682-44706701 | Msa0120070:intron | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1_3:44706747-44706766 | Msa0120070:intron | 45.0% | |
| !! | TGATGTCTGCTTTGGCTCTT+GGG | - | chr1_3:44706755-44706774 | Msa0120070:intron | 45.0% |
| ! | GTTTCTTTAACGGATGCCTC+AGG | - | chr1_3:44707496-44707515 | Msa0120070:intron | 45.0% |
| AGATGAAGGGCTAATGCAAG+TGG | - | chr1_3:44707573-44707592 | Msa0120070:intron | 45.0% | |
| GATGAAGGGCTAATGCAAGT+GGG | - | chr1_3:44707574-44707593 | Msa0120070:intron | 45.0% | |
| ATATCTAACTCGAGCAACGC+CGG | + | chr1_3:44707682-44707701 | None:intergenic | 45.0% | |
| GCCGAGTTTGCATGGAAATT+AGG | - | chr1_3:44707885-44707904 | Msa0120070:intron | 45.0% | |
| GCCGAGTTTGCATGGAAATT+AGG | - | chr1_3:44707885-44707904 | Msa0120070:intron | 45.0% | |
| !! | TGCAGGGAGAGTATTGGTAA+AGG | - | chr1_3:44708566-44708585 | Msa0120070:intron | 45.0% |
| !! | GGAGAGTATTGGTAAAGGTG+AGG | - | chr1_3:44708571-44708590 | Msa0120070:intron | 45.0% |
| GTTAAGTGGTAGCACTTGCT+TGG | - | chr1_3:44708618-44708637 | Msa0120070:intron | 45.0% | |
| !! | AAATCATGTGCGGTTCGGTT+CGG | + | chr1_3:44709904-44709923 | None:intergenic | 45.0% |
| !! | ATCATTCTTAGGGGTGTTCG+CGG | + | chr1_3:44709975-44709994 | None:intergenic | 45.0% |
| ATTTCTTTGTCAGGGCAGCA+AGG | + | chr1_3:44710198-44710217 | None:intergenic | 45.0% | |
| AGTGCATGTCTCTCTAGTGT+AGG | - | chr1_3:44710383-44710402 | Msa0120070:intron | 45.0% | |
| TGGATCATGCTAGGGTGATT+TGG | - | chr1_3:44710647-44710666 | Msa0120070:intron | 45.0% | |
| GAGATTGAGGGCTTCAACAT+TGG | - | chr1_3:44711127-44711146 | Msa0120070:intron | 45.0% | |
| ! | GTCGCAGCCCTATAACTTTT+GGG | - | chr1_3:44711433-44711452 | Msa0120070:intron | 45.0% |
| GGGTCCACATATAACATCAG+TGG | - | chr1_3:44711464-44711483 | Msa0120070:intron | 45.0% | |
| !! | AGCTGGTCAAGTTGGAGAAA+AGG | + | chr1_3:44711511-44711530 | None:intergenic | 45.0% |
| TCTATCTAACCCTTGGAAGC+TGG | + | chr1_3:44711528-44711547 | None:intergenic | 45.0% | |
| TTGATCACTTGTTCCCATCG+AGG | + | chr1_3:44712477-44712496 | None:intergenic | 45.0% | |
| ATTGCAATGGCAATAGTGGC+TGG | - | chr1_3:44712729-44712748 | Msa0120070:intron | 45.0% | |
| GATTTCTGTGCACAGACAAG+TGG | - | chr1_3:44706682-44706701 | Msa0120070:intron | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1_3:44706747-44706766 | Msa0120070:intron | 45.0% | |
| GTGATGTCTGCTTTGGCTAT+TGG | - | chr1_3:44713293-44713312 | Msa0120070:CDS | 45.0% | |
| !! | AATTTATCATTAAAAAATAA+GGG | + | chr1_3:44707540-44707559 | None:intergenic | 5.0% |
| AAGGCCTGGAGGATGGAAAA+AGG | - | chr1_3:44706013-44706032 | Msa0120070:CDS | 50.0% | |
| AGGCCTGGAGGATGGAAAAA+GGG | - | chr1_3:44706014-44706033 | Msa0120070:CDS | 50.0% | |
| ! | GTTCCCTTTTTCCATCCTCC+AGG | + | chr1_3:44706020-44706039 | None:intergenic | 50.0% |
| ! | AAGGTTAGGTGCCATAGCAG+CGG | - | chr1_3:44706061-44706080 | Msa0120070:CDS | 50.0% |
| GGCTACGACAGAGAATGGTA+GGG | + | chr1_3:44706318-44706337 | None:intergenic | 50.0% | |
| TGGCTACGACAGAGAATGGT+AGG | + | chr1_3:44706319-44706338 | None:intergenic | 50.0% | |
| !! | GTGATGTCTGCTTTGGCTCT+TGG | - | chr1_3:44706754-44706773 | Msa0120070:intron | 50.0% |
| TATCTAACTCGAGCAACGCC+GGG | + | chr1_3:44707681-44707700 | None:intergenic | 50.0% | |
| TTAGGGTAGCCGAGTTTGCA+TGG | - | chr1_3:44707903-44707922 | Msa0120070:intron | 50.0% | |
| ! | GAAGGATGCAGGGAGAGTAT+TGG | - | chr1_3:44708560-44708579 | Msa0120070:intron | 50.0% |
| ACAACAAATCAGCCGATGCC+CGG | - | chr1_3:44708943-44708962 | Msa0120070:intron | 50.0% | |
| CTGTTTGTTTGTCCGGGCAT+CGG | + | chr1_3:44708958-44708977 | None:intergenic | 50.0% | |
| CCGAGTCTGTTTGTTTGTCC+GGG | + | chr1_3:44708964-44708983 | None:intergenic | 50.0% | |
| CCCGGACAAACAAACAGACT+CGG | - | chr1_3:44708961-44708980 | Msa0120070:intron | 50.0% | |
| GCCGAGTCTGTTTGTTTGTC+CGG | + | chr1_3:44708965-44708984 | None:intergenic | 50.0% | |
| ! | CGGTTTGGATCGATTTCGAG+GGG | + | chr1_3:44709950-44709969 | None:intergenic | 50.0% |
| !! | CCGGTTTGGATCGATTTCGA+GGG | + | chr1_3:44709951-44709970 | None:intergenic | 50.0% |
| CCCTCGAAATCGATCCAAAC+CGG | - | chr1_3:44709948-44709967 | Msa0120070:intron | 50.0% | |
| !! | TCCGGTTTGGATCGATTTCG+AGG | + | chr1_3:44709952-44709971 | None:intergenic | 50.0% |
| CTAACAACCATGGACACACG+CGG | - | chr1_3:44710334-44710353 | Msa0120070:intron | 50.0% | |
| ! | TTGATTCTAAGGGGGAGTGC+AGG | - | chr1_3:44711411-44711430 | Msa0120070:intron | 50.0% |
| ! | GGTCGCAGCCCTATAACTTT+TGG | - | chr1_3:44711432-44711451 | Msa0120070:intron | 50.0% |
| TCCAACTTGACCAGCTTCCA+AGG | - | chr1_3:44711515-44711534 | Msa0120070:intron | 50.0% | |
| CCAACTTGACCAGCTTCCAA+GGG | - | chr1_3:44711516-44711535 | Msa0120070:intron | 50.0% | |
| ATGGTACCACAAGGAGCTTG+TGG | - | chr1_3:44711948-44711967 | Msa0120070:intron | 50.0% | |
| TAGTCTCCACAAGCTCCTTG+TGG | + | chr1_3:44711957-44711976 | None:intergenic | 50.0% | |
| TTGGATGCTTTGTCACCCGA+GGG | + | chr1_3:44711991-44712010 | None:intergenic | 50.0% | |
| ATTGGATGCTTTGTCACCCG+AGG | + | chr1_3:44711992-44712011 | None:intergenic | 50.0% | |
| !! | TTTTGGTTGCAGCACCTGCA+AGG | - | chr1_3:44712369-44712388 | Msa0120070:intron | 50.0% |
| AAGGCCAGGAGGATGGAAAA+AGG | - | chr1_3:44712388-44712407 | Msa0120070:intron | 50.0% | |
| AGGCCAGGAGGATGGAAAAA+GGG | - | chr1_3:44712389-44712408 | Msa0120070:intron | 50.0% | |
| ! | ATGCCCTTTTTCCATCCTCC+TGG | + | chr1_3:44712395-44712414 | None:intergenic | 50.0% |
| ATCACTTGTTCCCATCGAGG+CGG | + | chr1_3:44712474-44712493 | None:intergenic | 50.0% | |
| ! | GGCAATAGTGGCTGGCTATT+TGG | - | chr1_3:44712737-44712756 | Msa0120070:intron | 50.0% |
| AAGCCTTGGTCCAGTTGCAT+GGG | + | chr1_3:44712802-44712821 | None:intergenic | 50.0% | |
| AAAGCCTTGGTCCAGTTGCA+TGG | + | chr1_3:44712803-44712822 | None:intergenic | 50.0% | |
| ACAGACAAGTGGTGCAGTTG+TGG | - | chr1_3:44713232-44713251 | Msa0120070:CDS | 50.0% | |
| CTAGTTGCACCTACAAGGCC+TGG | - | chr1_3:44705999-44706018 | Msa0120070:CDS | 55.0% | |
| ! | TTCCATCCTCCAGGCCTTGT+AGG | + | chr1_3:44706011-44706030 | None:intergenic | 55.0% |
| AGCTGCAGCAGCACTTGAAG+TGG | + | chr1_3:44706590-44706609 | None:intergenic | 55.0% | |
| TCTTCCGGTGGGGTAGATGA+AGG | - | chr1_3:44707559-44707578 | Msa0120070:intron | 55.0% | |
| CTTCCGGTGGGGTAGATGAA+GGG | - | chr1_3:44707560-44707579 | Msa0120070:intron | 55.0% | |
| TAGCCCTTCATCTACCCCAC+CGG | + | chr1_3:44707566-44707585 | None:intergenic | 55.0% | |
| CACTTGCTTGGCTCCTCTAG+TGG | - | chr1_3:44708630-44708649 | Msa0120070:intron | 55.0% | |
| CTTTGTCAGGGCAGCAAGGT+AGG | + | chr1_3:44710194-44710213 | None:intergenic | 55.0% | |
| CCCTTGGAAGCTGGTCAAGT+TGG | + | chr1_3:44711519-44711538 | None:intergenic | 55.0% | |
| ! | AGTTGCATGGGGGCGTATGA+TGG | + | chr1_3:44712790-44712809 | None:intergenic | 55.0% |
| ATCATACGCCCCCATGCAAC+TGG | - | chr1_3:44712789-44712808 | Msa0120070:intron | 55.0% | |
| AGCCTTGGTCCAGTTGCATG+GGG | + | chr1_3:44712801-44712820 | None:intergenic | 55.0% | |
| GTTGCACCTACAAGGCCTGG+AGG | - | chr1_3:44706002-44706021 | Msa0120070:CDS | 60.0% | |
| CACCTACAAGGCCTGGAGGA+TGG | - | chr1_3:44706006-44706025 | Msa0120070:CDS | 60.0% | |
| AGCGGCAATAGCCGCTGCTA+TGG | + | chr1_3:44706075-44706094 | None:intergenic | 60.0% | |
| TATTGCCGCTGCCGCCTCAA+TGG | - | chr1_3:44706085-44706104 | Msa0120070:CDS | 60.0% | |
| ATTGCCGCTGCCGCCTCAAT+GGG | - | chr1_3:44706086-44706105 | Msa0120070:CDS | 60.0% | |
| TGTTCCCATTGAGGCGGCAG+CGG | + | chr1_3:44706093-44706112 | None:intergenic | 60.0% | |
| AAGCCTTGGTCCAGGCGCAT+GGG | + | chr1_3:44706351-44706370 | None:intergenic | 60.0% | |
| AAAGCCTTGGTCCAGGCGCA+TGG | + | chr1_3:44706352-44706371 | None:intergenic | 60.0% | |
| !! | TCTTAGGGGTGTTCGCGGTC+CGG | + | chr1_3:44709970-44709989 | None:intergenic | 60.0% |
| ACAACCATGGACACACGCGG+TGG | - | chr1_3:44710337-44710356 | Msa0120070:intron | 60.0% | |
| ACATCCACCGCGTGTGTCCA+TGG | + | chr1_3:44710344-44710363 | None:intergenic | 60.0% | |
| GACACACGCGGTGGATGTGT+TGG | - | chr1_3:44710346-44710365 | Msa0120070:intron | 60.0% | |
| ! | CGCGGTGGATGTGTTGGTAG+CGG | - | chr1_3:44710352-44710371 | Msa0120070:intron | 60.0% |
| !! | TTCCATCCTCCTGGCCTTGC+AGG | + | chr1_3:44712386-44712405 | None:intergenic | 60.0% |
| AGCGGCAAGAGCTGCTGCTA+TGG | + | chr1_3:44712450-44712469 | None:intergenic | 60.0% | |
| GCCTTGGTCCAGTTGCATGG+GGG | + | chr1_3:44712800-44712819 | None:intergenic | 60.0% | |
| AGGCGCATGGGGGCGAATGA+TGG | + | chr1_3:44706339-44706358 | None:intergenic | 65.0% | |
| ATCATTCGCCCCCATGCGCC+TGG | - | chr1_3:44706338-44706357 | Msa0120070:intron | 65.0% | |
| AGCCTTGGTCCAGGCGCATG+GGG | + | chr1_3:44706350-44706369 | None:intergenic | 65.0% | |
| GTTGCAGCACCTGCAAGGCC+AGG | - | chr1_3:44712374-44712393 | Msa0120070:intron | 65.0% | |
| CACCTGCAAGGCCAGGAGGA+TGG | - | chr1_3:44712381-44712400 | Msa0120070:intron | 65.0% | |
| TGTTCCCATCGAGGCGGCAG+CGG | + | chr1_3:44712468-44712487 | None:intergenic | 65.0% | |
| GCCCCCATGCAACTGGACCA+AGG | - | chr1_3:44712796-44712815 | Msa0120070:intron | 65.0% | |
| GCCTTGGTCCAGGCGCATGG+GGG | + | chr1_3:44706349-44706368 | None:intergenic | 70.0% | |
| ! | GGGGTGTTCGCGGTCCGGTT+TGG | + | chr1_3:44709965-44709984 | None:intergenic | 70.0% |
| GCAGCACCTGCAAGGCCAGG+AGG | - | chr1_3:44712377-44712396 | Msa0120070:intron | 70.0% | |
| TCTTGCCGCTGCCGCCTCGA+TGG | - | chr1_3:44712460-44712479 | Msa0120070:intron | 70.0% | |
| CTTGCCGCTGCCGCCTCGAT+GGG | - | chr1_3:44712461-44712480 | Msa0120070:intron | 70.0% | |
| GCCCCCATGCGCCTGGACCA+AGG | - | chr1_3:44706345-44706364 | Msa0120070:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 44705942 | 44713325 | 44705942 | ID=Msa0120070;Name=Msa0120070 |
| chr1_3 | mRNA | 44705942 | 44713325 | 44705942 | ID=Msa0120070-mRNA-1;Parent=Msa0120070;Name=Msa0120070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.6|0.5|6|0|304 |
| chr1_3 | exon | 44713081 | 44713325 | 44713081 | ID=Msa0120070-mRNA-1:exon:13395;Parent=Msa0120070-mRNA-1 |
| chr1_3 | exon | 44712936 | 44712999 | 44712936 | ID=Msa0120070-mRNA-1:exon:13394;Parent=Msa0120070-mRNA-1 |
| chr1_3 | exon | 44712509 | 44712696 | 44712509 | ID=Msa0120070-mRNA-1:exon:13393;Parent=Msa0120070-mRNA-1 |
| chr1_3 | exon | 44706779 | 44706921 | 44706779 | ID=Msa0120070-mRNA-1:exon:13392;Parent=Msa0120070-mRNA-1 |
| chr1_3 | exon | 44706425 | 44706483 | 44706425 | ID=Msa0120070-mRNA-1:exon:13391;Parent=Msa0120070-mRNA-1 |
| chr1_3 | exon | 44705942 | 44706157 | 44705942 | ID=Msa0120070-mRNA-1:exon:13390;Parent=Msa0120070-mRNA-1 |
| chr1_3 | CDS | 44713081 | 44713325 | 44713081 | ID=Msa0120070-mRNA-1:cds;Parent=Msa0120070-mRNA-1 |
| chr1_3 | CDS | 44712936 | 44712999 | 44712936 | ID=Msa0120070-mRNA-1:cds;Parent=Msa0120070-mRNA-1 |
| chr1_3 | CDS | 44712509 | 44712696 | 44712509 | ID=Msa0120070-mRNA-1:cds;Parent=Msa0120070-mRNA-1 |
| chr1_3 | CDS | 44706779 | 44706921 | 44706779 | ID=Msa0120070-mRNA-1:cds;Parent=Msa0120070-mRNA-1 |
| chr1_3 | CDS | 44706425 | 44706483 | 44706425 | ID=Msa0120070-mRNA-1:cds;Parent=Msa0120070-mRNA-1 |
| chr1_3 | CDS | 44705942 | 44706157 | 44705942 | ID=Msa0120070-mRNA-1:cds;Parent=Msa0120070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
