AlfalfaGEDB | Msa0640290

M. sativa cultivar zhongmu-4 / Msa0640290

KEGG: K00430
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640290	XP_013455618.1	97.531	324	8	0	1	324	3	326	0.0	660

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640290	sp\|Q9SUT2\|PER39_ARATH	61.059	321	117	3	9	324	9	326	4.44e-145	414

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640290	A0A072UIQ7	97.531	324	8	0	1	324	3	326	0.0	660

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004580	Msa0640290	0.819317	1.237683e-52	-8.615850e-47
Msa0010150	Msa0640290	0.831132	1.984814e-55	-8.615850e-47
Msa0011510	Msa0640290	0.810120	1.349834e-50	-8.615850e-47
Msa0012820	Msa0640290	0.827073	1.912958e-54	-8.615850e-47
Msa0014590	Msa0640290	0.819161	1.342776e-52	-8.615850e-47
Msa0024280	Msa0640290	0.833412	5.412089e-56	-8.615850e-47
Msa0024290	Msa0640290	0.807267	5.494349e-50	-8.615850e-47
Msa0027860	Msa0640290	0.811848	5.702826e-51	-8.615850e-47
Msa0036230	Msa0640290	0.821656	3.594996e-53	-8.615850e-47
Msa0036580	Msa0640290	0.827421	1.578817e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640290	MtrunA17_Chr4g0024121	97.531	324	8	0	1	324	3	326	0.0	660
Msa0640290	MtrunA17_Chr2g0322861	71.340	321	88	3	5	324	69	386	5.30e-175	490
Msa0640290	MtrunA17_Chr7g0268501	54.430	316	138	4	9	324	11	320	2.96e-122	353
Msa0640290	MtrunA17_Chr7g0268521	54.430	316	138	4	9	324	11	320	2.96e-122	353
Msa0640290	MtrunA17_Chr3g0128061	46.082	319	171	1	7	324	8	326	1.11e-97	291
Msa0640290	MtrunA17_Chr5g0402581	43.344	323	181	2	3	324	5	326	2.78e-93	280
Msa0640290	MtrunA17_Chr5g0402571	42.415	323	184	2	3	324	5	326	8.69e-93	279
Msa0640290	MtrunA17_Chr2g0292241	44.109	331	177	4	1	324	1	330	3.65e-92	278
Msa0640290	MtrunA17_Chr5g0405991	47.170	318	156	6	10	324	8	316	2.39e-90	272
Msa0640290	MtrunA17_Chr1g0204011	43.731	327	173	6	1	324	4	322	4.97e-90	271

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0640290	AT4G11290.1	61.059	321	117	3	9	324	9	326	4.51e-146	414
Msa0640290	AT1G05260.1	62.179	312	116	2	14	324	15	325	7.06e-146	414
Msa0640290	AT3G21770.1	58.900	309	125	2	14	321	18	325	4.85e-135	387
Msa0640290	AT5G15180.1	53.438	320	144	5	7	324	13	329	8.32e-120	348
Msa0640290	AT3G01190.1	52.025	321	145	6	8	324	6	321	1.42e-113	332
Msa0640290	AT1G05240.1	49.346	306	143	5	25	324	26	325	3.09e-103	306
Msa0640290	AT1G05250.1	49.346	306	143	5	25	324	26	325	3.09e-103	306
Msa0640290	AT2G18150.1	43.831	308	170	3	19	324	30	336	7.20e-89	270
Msa0640290	AT2G39040.1	46.965	313	157	7	19	324	40	350	1.63e-88	269
Msa0640290	AT5G51890.1	42.320	319	173	5	10	324	11	322	2.78e-87	265

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Find 56 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTTGTTCAGCTTT+GGG	0.265521	4_3:-38480666	None:intergenic
AAACAATTTGTTCAGCTTTG+GGG	0.596812	4_3:-38480665	None:intergenic
AAGCAAGTAGTTAAGAGAAG+GGG	0.586770	4_3:+38482417	Msa0640290:CDS
AATGACCTAGTCTTGCTTTC+TGG	0.177027	4_3:+38481837	Msa0640290:CDS
AATGTCAAGATTGGAACTGA+AGG	0.567200	4_3:+38482567	Msa0640290:CDS
AATTCTTTACTGAATTTGGA+AGG	0.512900	4_3:+38482520	Msa0640290:CDS
ACAAACCAACCAAGCTGAAA+AGG	0.453254	4_3:+38481072	Msa0640290:CDS
ACAAGCAAGTAGTTAAGAGA+AGG	0.514948	4_3:+38482415	Msa0640290:CDS
ACACTTATTGAAATGGACCC+TGG	0.584876	4_3:+38482363	Msa0640290:CDS
ACTCATGCTCAATTGCAGCA+AGG	0.664209	4_3:+38480624	Msa0640290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAAACCTTGAAGTAACTC+TGG	-	chr4_3:38480575-38480594	None:intergenic	30.0%
ATACCTTGACAAAACAATCA+TGG	-	chr4_3:38480758-38480777	None:intergenic	30.0%
GTATATCGACAAATCAATGT+GGG	-	chr4_3:38480852-38480871	None:intergenic	30.0%
AGTATATCGACAAATCAATG+TGG	-	chr4_3:38480853-38480872	None:intergenic	30.0%
ACTGTATATGTCAATAGACA+TGG	+	chr4_3:38482106-38482125	Msa0640290:intron	30.0%
ACCAAAACTATCATTCTTTC+AGG	+	chr4_3:38482192-38482211	Msa0640290:intron	30.0%
AGTTGAAATTGATGAGCAAT+GGG	-	chr4_3:38482238-38482257	None:intergenic	30.0%
TAGTTGAAATTGATGAGCAA+TGG	-	chr4_3:38482239-38482258	None:intergenic	30.0%
ATTGCTCATCAATTTCAACT+AGG	+	chr4_3:38482238-38482257	Msa0640290:CDS	30.0%
CATATTCATTGTCTAGATCT+GGG	-	chr4_3:38482296-38482315	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	38480564	38482623	38480564	ID=Msa0640290;Name=Msa0640290
chr4_3	mRNA	38480564	38482623	38480564	ID=Msa0640290-mRNA-1;Parent=Msa0640290;Name=Msa0640290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|4\|0\|324
chr4_3	exon	38480564	38480773	38480564	ID=Msa0640290-mRNA-1:exon:8675;Parent=Msa0640290-mRNA-1
chr4_3	exon	38481040	38481231	38481040	ID=Msa0640290-mRNA-1:exon:8676;Parent=Msa0640290-mRNA-1
chr4_3	exon	38481696	38481858	38481696	ID=Msa0640290-mRNA-1:exon:8677;Parent=Msa0640290-mRNA-1
chr4_3	exon	38482214	38482623	38482214	ID=Msa0640290-mRNA-1:exon:8678;Parent=Msa0640290-mRNA-1
chr4_3	CDS	38480564	38480773	38480564	ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
chr4_3	CDS	38481040	38481231	38481040	ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
chr4_3	CDS	38481696	38481858	38481696	ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
chr4_3	CDS	38482214	38482623	38482214	ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1

Gene Sequence

>Msa0640290

ATGGGAAGCCAGAGTTACTTCAAGGTTTTAATTATTTGTCTTATAGCAATAATTGGATCAACTCATGCTCAATTGCAGCAAGGTTTCTATGCTAAAAGCTGCCCCAAAGCTGAACAAATTGTTTTGAAGTATGTTCATGAACACATTCCCAGTGTACCATCACTAGCAGCTGCACTCATAAGGCTACATTTCCATGATTGTTTTGTCAAGGGATGTGATGCATCGGTACTTCTGAACTCAACACAAACCAACCAAGCTGAAAAGGATGCTATTCCAAATCTTACACTTCGAGGCTATGAATTCATTGACACAATAAAGAGTCTTGTTGAAAAAGAATGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTTTGACTGCTAGAGATTCTATTCATTCTATTGGTGGGCCTTATTGGAAGGTTCCAACAGGTAGAAGGGATGGCATCATATCTAAAGCAGCAGATACTTTTACTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCTCCTAACACTCTTTGGCAATGTTGGACTTGATGCAAATGACCTAGTCTTGCTTTCTGGTGCACACACAATTGGTGTTTCCCATTGCTCATCAATTTCAACTAGGCTATATAATTTTACTGGCAAGGGTGATCAAGACCCAGATCTAGACAATGAATATGCTAAGAATTTGAAAACATTTAAGTGTAAAAATATCAATGATCAAACCACACTTATTGAAATGGACCCTGGAAGTCGTAATACATTTGATCTTGGCTATTACAAGCAAGTAGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTTAAAAGCTCTACAACAAGATCTATTCTTGCACAACATCTTCAATCGAATGAAAAATTCTTTACTGAATTTGGAAGGTCCATGGAAAAAATGGGACGAATTAATGTCAAGATTGGAACTGAAGGAGAGATCAGAAAGCACTGTGCATTTATAAATTAA

Protein sequence

>Msa0640290

MGSQSYFKVLIICLIAIIGSTHAQLQQGFYAKSCPKAEQIVLKYVHEHIPSVPSLAAALIRLHFHDCFVKGCDASVLLNSTQTNQAEKDAIPNLTLRGYEFIDTIKSLVEKECPGVVSCADILTLTARDSIHSIGGPYWKVPTGRRDGIISKAADTFTSLPAPFHNLTVLLTLFGNVGLDANDLVLLSGAHTIGVSHCSSISTRLYNFTGKGDQDPDLDNEYAKNLKTFKCKNINDQTTLIEMDPGSRNTFDLGYYKQVVKRRGLFQSDAALLKSSTTRSILAQHLQSNEKFFTEFGRSMEKMGRINVKIGTEGEIRKHCAFIN*