AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0640290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640290 MtrunA17_Chr4g0024121 97.531 324 8 0 1 324 3 326 0.0 660
Msa0640290 MtrunA17_Chr2g0322861 71.340 321 88 3 5 324 69 386 5.30e-175 490
Msa0640290 MtrunA17_Chr7g0268501 54.430 316 138 4 9 324 11 320 2.96e-122 353
Msa0640290 MtrunA17_Chr7g0268521 54.430 316 138 4 9 324 11 320 2.96e-122 353
Msa0640290 MtrunA17_Chr3g0128061 46.082 319 171 1 7 324 8 326 1.11e-97 291
Msa0640290 MtrunA17_Chr5g0402581 43.344 323 181 2 3 324 5 326 2.78e-93 280
Msa0640290 MtrunA17_Chr5g0402571 42.415 323 184 2 3 324 5 326 8.69e-93 279
Msa0640290 MtrunA17_Chr2g0292241 44.109 331 177 4 1 324 1 330 3.65e-92 278
Msa0640290 MtrunA17_Chr5g0405991 47.170 318 156 6 10 324 8 316 2.39e-90 272
Msa0640290 MtrunA17_Chr1g0204011 43.731 327 173 6 1 324 4 322 4.97e-90 271
Msa0640290 MtrunA17_Chr5g0404721 48.322 298 151 3 29 324 34 330 1.48e-89 271
Msa0640290 MtrunA17_Chr2g0279041 45.260 327 167 5 5 324 4 325 2.03e-89 270
Msa0640290 MtrunA17_Chr2g0292181 43.925 321 172 4 11 324 20 339 2.23e-89 271
Msa0640290 MtrunA17_Chr2g0292261 44.548 321 170 5 11 324 11 330 2.58e-89 271
Msa0640290 MtrunA17_Chr2g0292211 43.505 331 179 4 1 324 12 341 5.83e-89 270
Msa0640290 MtrunA17_Chr8g0371381 45.246 305 161 4 20 324 21 319 6.76e-88 266
Msa0640290 MtrunA17_Chr7g0258811 41.159 328 188 4 1 324 45 371 1.09e-86 265
Msa0640290 MtrunA17_Chr2g0299691 43.827 324 173 5 7 324 38 358 1.34e-86 264
Msa0640290 MtrunA17_Chr1g0175561 41.049 324 186 4 5 324 4 326 2.57e-86 262
Msa0640290 MtrunA17_Chr3g0129051 41.534 313 172 4 11 320 14 318 2.79e-86 262
Msa0640290 MtrunA17_Chr2g0291751 42.296 331 183 4 1 324 1 330 3.51e-86 263
Msa0640290 MtrunA17_Chr2g0292111 43.598 328 174 5 7 324 4 330 6.31e-86 262
Msa0640290 MtrunA17_Chr6g0477071 43.974 307 161 4 18 324 47 342 1.64e-85 261
Msa0640290 MtrunA17_Chr2g0292251 44.805 308 166 3 20 324 23 329 3.24e-85 260
Msa0640290 MtrunA17_Chr1g0188431 41.250 320 177 3 5 324 19 327 3.33e-85 259
Msa0640290 MtrunA17_Chr2g0292091 42.508 327 183 5 1 324 1 325 2.35e-84 258
Msa0640290 MtrunA17_Chr1g0164891 46.382 304 157 5 26 324 90 392 2.38e-84 259
Msa0640290 MtrunA17_Chr4g0070951 42.154 325 180 4 5 324 8 329 2.75e-84 257
Msa0640290 MtrunA17_Chr4g0063671 41.615 322 178 4 8 324 4 320 2.87e-83 254
Msa0640290 MtrunA17_Chr2g0292151 42.900 331 181 4 1 324 1 330 4.07e-83 255
Msa0640290 MtrunA17_Chr8g0372601 44.966 298 161 3 29 324 34 330 8.06e-83 253
Msa0640290 MtrunA17_Chr3g0114451 42.236 322 175 4 6 324 5 318 7.13e-82 251
Msa0640290 MtrunA17_Chr3g0106921 42.553 329 167 8 4 324 6 320 8.74e-82 250
Msa0640290 MtrunA17_Chr7g0254201 41.776 304 166 4 23 324 18 312 2.78e-81 249
Msa0640290 MtrunA17_Chr2g0292101 41.590 327 187 3 1 324 1 326 1.53e-80 248
Msa0640290 MtrunA17_Chr5g0432441 40.625 320 177 5 10 324 15 326 1.88e-80 247
Msa0640290 MtrunA17_Chr2g0292271 42.154 325 184 3 3 324 7 330 2.27e-80 248
Msa0640290 MtrunA17_Chr1g0157051 41.325 317 177 4 9 323 8 317 3.98e-80 246
Msa0640290 MtrunA17_Chr2g0320071 39.938 323 183 4 5 324 3 317 5.40e-80 246
Msa0640290 MtrunA17_Chr6g0460711 40.498 321 179 5 8 324 2 314 8.76e-80 245
Msa0640290 MtrunA17_Chr2g0320101 40.000 320 181 4 6 324 8 317 1.37e-79 245
Msa0640290 MtrunA17_Chr1g0194151 40.498 321 185 4 9 324 14 333 1.99e-79 245
Msa0640290 MtrunA17_Chr7g0225221 41.772 316 176 4 11 324 11 320 5.52e-79 243
Msa0640290 MtrunA17_Chr7g0244461 38.365 318 187 3 8 324 3 312 9.52e-79 243
Msa0640290 MtrunA17_Chr1g0194271 38.415 328 189 4 9 324 14 340 2.76e-78 242
Msa0640290 MtrunA17_Chr8g0364291 39.432 317 187 4 11 324 10 324 3.38e-78 241
Msa0640290 MtrunA17_Chr2g0292291 42.236 322 177 6 11 324 12 332 1.02e-77 241
Msa0640290 MtrunA17_Chr2g0296621 45.215 303 152 7 25 324 50 341 1.57e-77 240
Msa0640290 MtrunA17_Chr1g0213061 40.625 320 175 7 9 324 13 321 3.00e-77 239
Msa0640290 MtrunA17_Chr4g0013171 39.514 329 186 6 1 324 1 321 3.13e-77 239
Msa0640290 MtrunA17_Chr7g0244451 39.623 318 183 3 8 324 7 316 4.77e-77 238
Msa0640290 MtrunA17_Chr4g0046131 42.434 304 168 5 24 321 41 343 6.42e-77 239
Msa0640290 MtrunA17_Chr2g0320061 41.694 307 169 4 20 324 20 318 7.09e-77 238
Msa0640290 MtrunA17_Chr4g0043391 38.957 326 184 6 7 324 6 324 1.63e-76 237
Msa0640290 MtrunA17_Chr7g0254231 40.066 302 171 4 23 324 20 311 2.72e-76 236
Msa0640290 MtrunA17_Chr3g0129061 40.635 315 176 4 9 320 12 318 3.23e-76 236
Msa0640290 MtrunA17_Chr4g0013201 37.126 334 183 4 10 324 13 338 6.85e-76 236
Msa0640290 MtrunA17_Chr5g0438021 40.187 321 179 4 10 324 12 325 1.19e-75 235
Msa0640290 MtrunA17_Chr4g0038161 39.557 316 186 4 10 324 9 320 1.98e-75 234
Msa0640290 MtrunA17_Chr5g0401431 40.439 319 185 2 9 323 11 328 2.21e-75 234
Msa0640290 MtrunA17_Chr2g0320091 40.000 320 182 3 6 324 8 318 3.10e-75 234
Msa0640290 MtrunA17_Chr4g0038171 39.688 320 181 5 10 324 9 321 4.30e-75 233
Msa0640290 MtrunA17_Chr4g0013191 37.910 335 181 5 10 324 13 340 6.23e-75 234
Msa0640290 MtrunA17_Chr4g0038151 39.688 320 181 5 9 324 10 321 2.77e-74 231
Msa0640290 MtrunA17_Chr4g0068621 41.368 307 173 5 21 324 34 336 3.06e-74 232
Msa0640290 MtrunA17_Chr5g0400331 42.810 306 169 4 25 324 26 331 3.72e-74 231
Msa0640290 MtrunA17_Chr2g0320051 41.368 307 170 4 20 324 20 318 8.76e-74 230
Msa0640290 MtrunA17_Chr4g0013721 39.610 308 181 4 18 324 93 396 2.63e-73 232
Msa0640290 MtrunA17_Chr5g0432341 40.303 330 182 8 1 324 1 321 2.91e-73 229
Msa0640290 MtrunA17_Chr5g0432351 40.000 330 183 8 1 324 1 321 4.48e-73 228
Msa0640290 MtrunA17_Chr1g0197411 37.771 323 195 5 7 324 9 330 1.49e-72 227
Msa0640290 MtrunA17_Chr4g0013181 40.134 299 168 5 29 324 63 353 1.74e-72 228
Msa0640290 MtrunA17_Chr4g0076211 41.946 298 164 5 28 324 44 333 2.41e-72 227
Msa0640290 MtrunA17_Chr1g0155611 41.914 303 172 3 25 324 46 347 3.85e-72 227
Msa0640290 MtrunA17_Chr1g0148021 41.515 330 185 5 1 324 1 328 4.09e-72 226
Msa0640290 MtrunA17_Chr3g0129041 40.000 315 178 4 9 320 12 318 7.29e-72 225
Msa0640290 MtrunA17_Chr4g0013821 38.361 305 183 4 21 324 24 324 2.97e-71 224
Msa0640290 MtrunA17_Chr4g0053871 40.252 318 178 4 10 323 14 323 3.76e-71 223
Msa0640290 MtrunA17_Chr2g0320031 37.695 321 190 4 6 324 7 319 3.02e-70 221
Msa0640290 MtrunA17_Chr4g0072091 40.134 299 175 3 24 320 23 319 3.26e-70 221
Msa0640290 MtrunA17_Chr5g0421411 41.281 281 156 7 51 324 7 285 1.18e-69 218
Msa0640290 MtrunA17_Chr2g0278671 40.385 312 176 5 18 324 17 323 1.37e-69 219
Msa0640290 MtrunA17_Chr7g0224371 38.730 315 183 4 11 324 17 322 2.91e-69 218
Msa0640290 MtrunA17_Chr2g0279061 46.154 260 131 4 69 324 12 266 5.23e-69 216
Msa0640290 MtrunA17_Chr3g0106901 37.975 316 187 3 10 324 16 323 2.72e-68 216
Msa0640290 MtrunA17_Chr5g0432331 37.879 330 190 8 1 324 32 352 6.39e-68 216
Msa0640290 MtrunA17_Chr3g0107881 40.426 329 177 9 4 324 7 324 2.22e-67 214
Msa0640290 MtrunA17_Chr3g0136751 38.253 332 182 6 3 324 4 322 5.22e-66 210
Msa0640290 MtrunA17_Chr2g0329641 38.344 326 188 6 7 324 15 335 2.73e-65 209
Msa0640290 MtrunA17_Chr6g0467251 35.061 328 195 6 2 320 6 324 3.22e-65 209
Msa0640290 MtrunA17_Chr4g0074851 36.755 302 184 2 25 324 32 328 1.98e-62 201
Msa0640290 MtrunA17_Chr6g0467161 35.404 322 192 7 9 324 25 336 5.97e-62 200
Msa0640290 MtrunA17_Chr2g0316481 37.764 331 173 7 23 321 74 403 6.80e-62 202
Msa0640290 MtrunA17_Chr6g0451571 36.250 320 195 6 10 324 19 334 8.40e-62 199
Msa0640290 MtrunA17_Chr6g0467121 36.826 334 185 7 5 324 42 363 1.45e-61 201
Msa0640290 MtrunA17_Chr2g0316791 36.858 331 176 6 23 321 74 403 4.45e-61 200
Msa0640290 MtrunA17_Chr2g0316831 36.937 333 173 7 23 321 110 439 9.87e-61 200
Msa0640290 MtrunA17_Chr1g0181511 35.738 305 187 3 23 324 25 323 2.40e-59 193
Msa0640290 MtrunA17_Chr2g0316191 36.145 332 178 6 23 321 74 404 2.89e-59 195
Msa0640290 MtrunA17_Chr2g0311251 35.435 333 181 6 23 323 9 339 7.19e-59 192
Msa0640290 MtrunA17_Chr1g0181431 35.599 309 182 6 23 324 25 323 7.36e-58 189
Msa0640290 MtrunA17_Chr1g0181481 34.754 305 190 3 23 324 25 323 2.87e-57 187
Msa0640290 MtrunA17_Chr5g0413051 35.577 312 194 5 19 324 67 377 5.77e-56 186
Msa0640290 MtrunA17_Chr4g0075241 33.645 321 202 4 9 324 13 327 1.31e-55 183
Msa0640290 MtrunA17_Chr2g0311241 31.989 372 178 6 23 321 58 427 3.85e-55 185
Msa0640290 MtrunA17_Chr2g0316811 40.541 222 115 2 23 227 48 269 1.76e-45 157
Msa0640290 MtrunA17_Chr4g0004591 31.861 317 156 5 25 321 77 353 2.51e-45 157
Msa0640290 MtrunA17_Chr5g0432401 31.579 323 167 7 4 320 8 282 9.51e-41 144
Msa0640290 MtrunA17_Chr2g0292281 41.232 211 111 5 116 324 17 216 1.14e-40 142
Msa0640290 MtrunA17_Chr2g0316141 32.509 283 141 6 71 321 11 275 3.09e-37 134
Msa0640290 MtrunA17_Chr2g0316181 32.509 283 141 6 71 321 11 275 3.09e-37 134
Msa0640290 MtrunA17_Chr3g0114461 36.458 192 113 3 130 320 5 188 4.82e-34 123
Msa0640290 MtrunA17_Chr3g0114491 51.376 109 52 1 24 131 17 125 3.32e-29 108
Msa0640290 MtrunA17_Chr1g0181491 44.037 109 60 1 23 131 10 117 6.03e-26 100
Msa0640290 MtrunA17_Chr6g0468731 61.765 68 23 1 64 131 22 86 1.04e-22 90.5
Msa0640290 MtrunA17_Chr1g0196191 58.824 68 28 0 67 134 27 94 2.17e-20 86.3
Msa0640290 MtrunA17_Chr1g0181501 29.897 194 126 4 134 324 3 189 1.06e-19 85.5
Msa0640290 MtrunA17_Chr7g0268491 46.341 82 43 1 243 324 17 97 5.13e-19 80.9
Msa0640290 MtrunA17_Chr5g0432321 36.800 125 70 3 145 269 17 132 5.39e-18 79.0
Msa0640290 MtrunA17_Chr7g0254181 37.500 120 71 2 72 190 6 122 6.81e-18 79.3
Msa0640290 MtrunA17_Chr4g0013811 47.945 73 38 0 135 207 6 78 4.09e-17 75.1
Msa0640290 MtrunA17_Chr7g0254171 35.897 117 68 2 70 179 3 119 1.36e-14 69.7
Msa0640290 MtrunA17_Chr2g0316771 25.824 182 106 3 171 323 4 185 9.97e-13 65.9
Msa0640290 MtrunA17_Chr3g0104101 30.282 142 93 4 188 324 9 149 2.22e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640290 AT4G11290.1 61.059 321 117 3 9 324 9 326 4.51e-146 414
Msa0640290 AT1G05260.1 62.179 312 116 2 14 324 15 325 7.06e-146 414
Msa0640290 AT3G21770.1 58.900 309 125 2 14 321 18 325 4.85e-135 387
Msa0640290 AT5G15180.1 53.438 320 144 5 7 324 13 329 8.32e-120 348
Msa0640290 AT3G01190.1 52.025 321 145 6 8 324 6 321 1.42e-113 332
Msa0640290 AT1G05240.1 49.346 306 143 5 25 324 26 325 3.09e-103 306
Msa0640290 AT1G05250.1 49.346 306 143 5 25 324 26 325 3.09e-103 306
Msa0640290 AT2G18150.1 43.831 308 170 3 19 324 30 336 7.20e-89 270
Msa0640290 AT2G39040.1 46.965 313 157 7 19 324 40 350 1.63e-88 269
Msa0640290 AT5G51890.1 42.320 319 173 5 10 324 11 322 2.78e-87 265
Msa0640290 AT5G14130.1 41.824 318 178 5 10 324 17 330 7.31e-86 261
Msa0640290 AT4G33420.1 42.902 317 168 5 10 324 20 325 1.47e-85 261
Msa0640290 AT2G41480.1 42.638 326 175 6 6 324 8 328 1.69e-85 261
Msa0640290 AT3G03670.1 40.881 318 186 2 7 324 6 321 2.19e-85 260
Msa0640290 AT5G14130.2 41.824 318 178 5 10 324 58 371 3.29e-85 261
Msa0640290 AT5G17820.1 42.357 314 171 4 11 324 10 313 4.43e-85 259
Msa0640290 AT5G19890.1 42.857 329 174 7 1 324 8 327 8.51e-85 259
Msa0640290 AT4G33420.2 42.902 317 168 5 10 324 67 372 1.09e-84 260
Msa0640290 AT2G18140.1 42.769 325 182 4 3 324 12 335 1.27e-84 259
Msa0640290 AT5G64120.1 41.018 334 181 5 1 324 1 328 2.05e-84 258
Msa0640290 AT4G36430.1 41.824 318 179 4 12 324 14 330 2.32e-84 258
Msa0640290 AT5G39580.1 42.378 328 176 7 1 324 1 319 2.39e-84 257
Msa0640290 AT5G17820.2 42.357 314 171 4 11 324 63 366 5.74e-84 258
Msa0640290 AT5G06720.1 40.252 318 186 3 10 324 17 333 1.93e-83 256
Msa0640290 AT3G32980.1 42.271 317 177 4 13 324 19 334 2.04e-83 256
Msa0640290 AT5G42180.1 42.122 311 175 3 10 320 8 313 3.07e-83 254
Msa0640290 AT3G50990.1 45.603 307 164 3 20 324 36 341 1.10e-82 254
Msa0640290 AT2G38390.1 40.000 320 187 4 9 324 15 333 1.20e-82 254
Msa0640290 AT4G08770.1 42.949 312 166 6 21 324 20 327 7.29e-82 252
Msa0640290 AT2G38380.1 40.625 320 185 4 9 324 15 333 8.07e-82 252
Msa0640290 AT5G66390.1 42.857 315 177 3 12 324 20 333 2.04e-81 250
Msa0640290 AT5G06730.1 38.994 318 190 4 10 324 18 334 1.19e-80 249
Msa0640290 AT3G49110.1 41.538 325 182 5 7 324 13 336 1.26e-80 249
Msa0640290 AT3G49120.1 41.325 317 180 4 13 324 20 335 2.91e-80 248
Msa0640290 AT2G24800.1 41.639 305 171 3 23 324 29 329 3.73e-80 247
Msa0640290 AT5G64100.1 43.333 300 159 5 28 324 40 331 3.57e-79 244
Msa0640290 AT4G37530.1 42.122 311 175 2 18 324 20 329 8.71e-79 243
Msa0640290 AT1G14550.1 41.121 321 179 5 7 324 8 321 4.59e-78 241
Msa0640290 AT1G71695.1 43.234 303 162 5 25 324 44 339 5.99e-78 242
Msa0640290 AT2G18980.1 42.553 329 178 5 1 324 1 323 4.79e-77 239
Msa0640290 AT1G49570.1 41.447 304 173 4 23 322 46 348 7.45e-77 239
Msa0640290 AT4G08780.1 41.667 312 170 6 21 324 20 327 2.76e-76 238
Msa0640290 AT1G44970.1 41.801 311 177 3 17 324 37 346 7.37e-76 236
Msa0640290 AT4G31760.1 39.937 318 182 5 10 324 15 326 8.94e-76 236
Msa0640290 AT5G19880.1 39.091 330 194 5 1 324 1 329 5.28e-75 234
Msa0640290 AT5G05340.1 40.328 305 173 3 22 324 27 324 1.74e-74 232
Msa0640290 AT4G37520.1 40.850 306 176 2 23 324 25 329 1.76e-74 233
Msa0640290 AT4G26010.1 39.557 316 175 6 10 324 9 309 3.44e-74 231
Msa0640290 AT4G16270.1 41.914 303 169 6 25 324 50 348 4.69e-74 232
Msa0640290 AT4G26010.2 39.557 316 175 6 10 324 37 337 6.33e-74 231
Msa0640290 AT1G77100.1 41.346 312 169 6 18 324 17 319 1.14e-73 230
Msa0640290 AT4G25980.1 39.252 321 185 5 10 324 10 326 1.41e-73 230
Msa0640290 AT1G14540.1 39.062 320 185 5 7 324 4 315 1.42e-73 229
Msa0640290 AT5G58400.1 41.083 314 176 5 10 320 14 321 4.44e-73 229
Msa0640290 AT5G64110.1 38.037 326 188 5 7 324 11 330 1.12e-72 228
Msa0640290 AT3G49960.1 40.432 324 184 4 9 324 7 329 1.41e-72 228
Msa0640290 AT2G35380.1 39.697 330 177 5 9 324 14 335 1.51e-72 228
Msa0640290 AT4G37520.2 40.850 306 173 3 23 324 25 326 3.65e-72 226
Msa0640290 AT2G22420.1 37.224 317 193 5 9 324 8 319 4.24e-71 224
Msa0640290 AT5G67400.1 40.129 309 180 2 20 324 22 329 5.44e-71 223
Msa0640290 AT5G22410.1 40.694 317 176 7 9 320 12 321 1.24e-70 223
Msa0640290 AT4G17690.1 38.141 312 184 4 16 324 17 322 1.88e-70 222
Msa0640290 AT5G58390.1 39.252 321 178 6 7 320 2 312 3.46e-70 221
Msa0640290 AT4G33870.1 35.821 335 179 3 22 321 65 398 5.27e-70 223
Msa0640290 AT1G34510.1 38.291 316 179 6 10 324 9 309 9.11e-70 220
Msa0640290 AT1G68850.1 38.235 306 183 4 25 324 30 335 9.38e-70 221
Msa0640290 AT2G34060.1 39.145 304 180 3 22 320 39 342 9.49e-69 218
Msa0640290 AT4G37530.2 44.231 260 140 2 18 273 20 278 4.81e-68 214
Msa0640290 AT4G30170.1 39.542 306 176 3 23 324 25 325 4.83e-68 216
Msa0640290 AT1G30870.1 41.584 303 166 6 25 324 51 345 9.72e-67 213
Msa0640290 AT5G47000.1 37.538 325 186 7 9 324 14 330 5.60e-66 211
Msa0640290 AT4G21960.1 35.435 333 200 5 1 324 1 327 1.65e-65 209
Msa0640290 AT5G40150.1 36.482 307 188 2 20 324 27 328 5.50e-64 206
Msa0640290 AT1G24110.1 35.443 316 194 4 12 320 6 318 1.77e-63 204
Msa0640290 AT2G43480.1 37.261 314 186 4 17 324 27 335 3.65e-62 201
Msa0640290 AT5G24070.1 35.398 339 192 7 5 324 5 335 1.27e-61 200
Msa0640290 AT3G28200.1 35.505 307 190 2 20 324 16 316 1.71e-61 199
Msa0640290 AT2G37130.1 33.876 307 193 4 22 324 27 327 1.21e-54 181
Msa0640290 AT2G37130.2 34.219 301 188 4 28 324 2 296 1.53e-53 177
Msa0640290 AT3G17070.1 32.432 333 201 7 3 320 12 335 5.54e-53 177
Msa0640290 AT2G35380.2 38.340 253 134 5 86 324 3 247 1.29e-48 163
Msa0640290 AT5G39580.2 44.279 201 102 4 1 198 1 194 1.35e-47 160
Msa0640290 AT4G25980.2 45.665 173 91 2 19 191 65 234 2.70e-45 156
Msa0640290 AT2G24800.2 44.910 167 89 1 23 189 29 192 1.63e-42 147
Msa0640290 AT3G17070.2 30.824 279 172 7 53 320 4 272 1.16e-38 138
Msa0640290 AT3G42570.1 33.019 106 70 1 87 191 44 149 1.54e-13 67.8

Find 56 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACCTAGTCTTGCTTTC+TGG 0.177027 4_3:+38481837 Msa0640290:CDS
ATTTGTCTTATAGCAATAAT+TGG 0.198586 4_3:+38480597 Msa0640290:CDS
ATTTGCAGGGTGGGCCTTAT+TGG 0.254925 4_3:+38481688 Msa0640290:intron
AAAACAATTTGTTCAGCTTT+GGG 0.265521 4_3:-38480666 None:intergenic
CAAAACAATTTGTTCAGCTT+TGG 0.265636 4_3:-38480667 None:intergenic
GCATATTCATTGTCTAGATC+TGG 0.329811 4_3:-38482294 None:intergenic
TAGCCTCGAAGTGTAAGATT+TGG 0.347680 4_3:-38481103 None:intergenic
GGAAGGTTCCAACAGGTAGA+AGG 0.383934 4_3:+38481709 Msa0640290:CDS
TCAAATGTATTACGACTTCC+AGG 0.390217 4_3:-38482381 None:intergenic
CTTTCAGGTGCACACACAAT+TGG 0.390335 4_3:+38482207 Msa0640290:intron
TCAAACCACACTTATTGAAA+TGG 0.390578 4_3:+38482356 Msa0640290:CDS
AGTCGTAATACATTTGATCT+TGG 0.396009 4_3:+38482387 Msa0640290:CDS
ACTGTCCTCCTAACACTCTT+TGG 0.396163 4_3:+38481795 Msa0640290:CDS
CAACATTGCCAAAGAGTGTT+AGG 0.396433 4_3:-38481803 None:intergenic
TAAGCAATGCAGCATCTGAT+TGG 0.403489 4_3:-38482446 None:intergenic
GGACGAATTAATGTCAAGAT+TGG 0.431289 4_3:+38482558 Msa0640290:CDS
CTAACACTCTTTGGCAATGT+TGG 0.442479 4_3:+38481804 Msa0640290:CDS
CACTAGCAGCTGCACTCATA+AGG 0.449235 4_3:+38480724 Msa0640290:CDS
ACAAACCAACCAAGCTGAAA+AGG 0.453254 4_3:+38481072 Msa0640290:CDS
CCTGTTGGAACCTTCCAATA+AGG 0.463341 4_3:-38481702 None:intergenic
ATTCCAAATCTTACACTTCG+AGG 0.467504 4_3:+38481100 Msa0640290:CDS
CATATTCATTGTCTAGATCT+GGG 0.471482 4_3:-38482293 None:intergenic
AGTTGAAATTGATGAGCAAT+GGG 0.471565 4_3:-38482235 None:intergenic
GGGAAGCCAGAGTTACTTCA+AGG 0.476148 4_3:+38480566 Msa0640290:CDS
TTAAAACCTTGAAGTAACTC+TGG 0.484915 4_3:-38480572 None:intergenic
GCAGGGTGGGCCTTATTGGA+AGG 0.485522 4_3:+38481692 Msa0640290:intron
TACTGAATTTGGAAGGTCCA+TGG 0.486526 4_3:+38482527 Msa0640290:CDS
CCTTATTGGAAGGTTCCAAC+AGG 0.506222 4_3:+38481702 Msa0640290:CDS
AGGACAGTGAGGTTGTGAAA+TGG 0.507765 4_3:-38481780 None:intergenic
CAAGCAAGTAGTTAAGAGAA+GGG 0.509407 4_3:+38482416 Msa0640290:CDS
AATTCTTTACTGAATTTGGA+AGG 0.512900 4_3:+38482520 Msa0640290:CDS
ACAAGCAAGTAGTTAAGAGA+AGG 0.514948 4_3:+38482415 Msa0640290:CDS
ATACCTTGACAAAACAATCA+TGG 0.517120 4_3:-38480755 None:intergenic
AGCTGCTAGTGATGGTACAC+TGG 0.519920 4_3:-38480712 None:intergenic
ATGCCATCCCTTCTACCTGT+TGG 0.530808 4_3:-38481717 None:intergenic
TAGTTGAAATTGATGAGCAA+TGG 0.547185 4_3:-38482236 None:intergenic
GTGAGGTTGTGAAATGGAGC+AGG 0.547960 4_3:-38481774 None:intergenic
GAAGGTTCCAACAGGTAGAA+GGG 0.566125 4_3:+38481710 Msa0640290:CDS
AATGTCAAGATTGGAACTGA+AGG 0.567200 4_3:+38482567 Msa0640290:CDS
AGGGTCCATTTCAATAAGTG+TGG 0.580715 4_3:-38482361 None:intergenic
ACACTTATTGAAATGGACCC+TGG 0.584876 4_3:+38482363 Msa0640290:CDS
ATTGCTCATCAATTTCAACT+AGG 0.585527 4_3:+38482238 Msa0640290:CDS
AAGCAAGTAGTTAAGAGAAG+GGG 0.586770 4_3:+38482417 Msa0640290:CDS
TCAGCACAAGAGACAACACC+AGG 0.593653 4_3:-38481169 None:intergenic
GTTCCAACAGGTAGAAGGGA+TGG 0.595922 4_3:+38481714 Msa0640290:CDS
AAACAATTTGTTCAGCTTTG+GGG 0.596812 4_3:-38480665 None:intergenic
ATGAGTGCAGCTGCTAGTGA+TGG 0.611781 4_3:-38480720 None:intergenic
GCATACCAGAAAGCAAGACT+AGG 0.628390 4_3:-38481842 None:intergenic
GGTTGTGAAATGGAGCAGGA+AGG 0.663275 4_3:-38481770 None:intergenic
ACTCATGCTCAATTGCAGCA+AGG 0.664209 4_3:+38480624 Msa0640290:CDS
CATTGCCAAAGAGTGTTAGG+AGG 0.665435 4_3:-38481800 None:intergenic
GCTGCTAGTGATGGTACACT+GGG 0.680818 4_3:-38480711 None:intergenic
AGAGTGTTAGGAGGACAGTG+AGG 0.689613 4_3:-38481791 None:intergenic
CAAATGTATTACGACTTCCA+GGG 0.691933 4_3:-38482380 None:intergenic
ATTGCAGGGATGTGATGCAT+CGG 0.711611 4_3:+38481033 Msa0640290:intron
CAGCACAAGAGACAACACCA+GGG 0.782900 4_3:-38481168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTATTTTAAATT+CGG - chr4_3:38482082-38482101 None:intergenic 0.0%
!!! TTTTTATTTTATTTTAAATT+CGG - chr4_3:38482082-38482101 None:intergenic 0.0%
!! TGAAATAATAATTAATTGAA+TGG + chr4_3:38480882-38480901 Msa0640290:intron 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG + chr4_3:38482035-38482054 Msa0640290:intron 10.0%
!! TGAAATAATAATTAATTGAA+TGG + chr4_3:38480882-38480901 Msa0640290:intron 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG + chr4_3:38482035-38482054 Msa0640290:intron 10.0%
!!! CAATATATTTTAAAGTGTTT+TGG - chr4_3:38481316-38481335 None:intergenic 15.0%
!!! CAAAACACTTTAAAATATAT+TGG + chr4_3:38481314-38481333 Msa0640290:intron 15.0%
!!! AATCTAAATTTTTTCTGATA+TGG + chr4_3:38481390-38481409 Msa0640290:intron 15.0%
!! TCAATTAGATAAATGTTATT+TGG + chr4_3:38481493-38481512 Msa0640290:intron 15.0%
!! GTTTAGTATGTATAATTATT+TGG + chr4_3:38481610-38481629 Msa0640290:intron 15.0%
!!! ATAATTATTTGGTTTTTTAG+TGG + chr4_3:38481621-38481640 Msa0640290:intron 15.0%
!!! CAATATATTTTAAAGTGTTT+TGG - chr4_3:38481316-38481335 None:intergenic 15.0%
!!! CAAAACACTTTAAAATATAT+TGG + chr4_3:38481314-38481333 Msa0640290:intron 15.0%
!!! AATCTAAATTTTTTCTGATA+TGG + chr4_3:38481390-38481409 Msa0640290:intron 15.0%
!! TCAATTAGATAAATGTTATT+TGG + chr4_3:38481493-38481512 Msa0640290:intron 15.0%
!! GTTTAGTATGTATAATTATT+TGG + chr4_3:38481610-38481629 Msa0640290:intron 15.0%
!!! ATAATTATTTGGTTTTTTAG+TGG + chr4_3:38481621-38481640 Msa0640290:intron 15.0%
!! ATTTGTCTTATAGCAATAAT+TGG + chr4_3:38480597-38480616 Msa0640290:CDS 20.0%
!!! TTTTAGTATCTCATTTCTAT+AGG + chr4_3:38481255-38481274 Msa0640290:intron 20.0%
!!! TATATTTTAAAGTGTTTTGG+AGG - chr4_3:38481313-38481332 None:intergenic 20.0%
!! GAAAAATTCTTTACTGAATT+TGG + chr4_3:38482516-38482535 Msa0640290:CDS 20.0%
!! ATTTGTCTTATAGCAATAAT+TGG + chr4_3:38480597-38480616 Msa0640290:CDS 20.0%
!!! TTTTAGTATCTCATTTCTAT+AGG + chr4_3:38481255-38481274 Msa0640290:intron 20.0%
!!! TATATTTTAAAGTGTTTTGG+AGG - chr4_3:38481313-38481332 None:intergenic 20.0%
!! GAAAAATTCTTTACTGAATT+TGG + chr4_3:38482516-38482535 Msa0640290:CDS 20.0%
!! AAAACAATTTGTTCAGCTTT+GGG - chr4_3:38480669-38480688 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG + chr4_3:38480997-38481016 Msa0640290:intron 25.0%
!! TTGGATTTTTGAATCTGAAT+TGG + chr4_3:38481333-38481352 Msa0640290:intron 25.0%
!! TGGATTTTTGAATCTGAATT+GGG + chr4_3:38481334-38481353 Msa0640290:intron 25.0%
!! CTGATATGGTGTATATATTT+TGG + chr4_3:38481404-38481423 Msa0640290:intron 25.0%
!! AAATGTTATTTGGTTATGCA+TGG + chr4_3:38481503-38481522 Msa0640290:intron 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG - chr4_3:38481867-38481886 None:intergenic 25.0%
! GTCTAAAAAAAACACTAACA+TGG + chr4_3:38481970-38481989 Msa0640290:intron 25.0%
!! ACTAGGCTATATAATTTTAC+TGG + chr4_3:38482255-38482274 Msa0640290:CDS 25.0%
!! CTATATAATTTTACTGGCAA+GGG + chr4_3:38482261-38482280 Msa0640290:CDS 25.0%
! AATTCTTTACTGAATTTGGA+AGG + chr4_3:38482520-38482539 Msa0640290:CDS 25.0%
!! AAAACAATTTGTTCAGCTTT+GGG - chr4_3:38480669-38480688 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG + chr4_3:38480997-38481016 Msa0640290:intron 25.0%
!! TTGGATTTTTGAATCTGAAT+TGG + chr4_3:38481333-38481352 Msa0640290:intron 25.0%
!! TGGATTTTTGAATCTGAATT+GGG + chr4_3:38481334-38481353 Msa0640290:intron 25.0%
!! CTGATATGGTGTATATATTT+TGG + chr4_3:38481404-38481423 Msa0640290:intron 25.0%
!! AAATGTTATTTGGTTATGCA+TGG + chr4_3:38481503-38481522 Msa0640290:intron 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG - chr4_3:38481867-38481886 None:intergenic 25.0%
! GTCTAAAAAAAACACTAACA+TGG + chr4_3:38481970-38481989 Msa0640290:intron 25.0%
!! ACTAGGCTATATAATTTTAC+TGG + chr4_3:38482255-38482274 Msa0640290:CDS 25.0%
!! CTATATAATTTTACTGGCAA+GGG + chr4_3:38482261-38482280 Msa0640290:CDS 25.0%
! AATTCTTTACTGAATTTGGA+AGG + chr4_3:38482520-38482539 Msa0640290:CDS 25.0%
TTAAAACCTTGAAGTAACTC+TGG - chr4_3:38480575-38480594 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG - chr4_3:38480668-38480687 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG - chr4_3:38480670-38480689 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTCA+AGG + chr4_3:38480752-38480771 Msa0640290:CDS 30.0%
ATACCTTGACAAAACAATCA+TGG - chr4_3:38480758-38480777 None:intergenic 30.0%
GTATATCGACAAATCAATGT+GGG - chr4_3:38480852-38480871 None:intergenic 30.0%
AGTATATCGACAAATCAATG+TGG - chr4_3:38480853-38480872 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG - chr4_3:38481303-38481322 None:intergenic 30.0%
ACTGTATATGTCAATAGACA+TGG + chr4_3:38482106-38482125 Msa0640290:intron 30.0%
ACCAAAACTATCATTCTTTC+AGG + chr4_3:38482192-38482211 Msa0640290:intron 30.0%
! ACCTGAAAGAATGATAGTTT+TGG - chr4_3:38482196-38482215 None:intergenic 30.0%
AGTTGAAATTGATGAGCAAT+GGG - chr4_3:38482238-38482257 None:intergenic 30.0%
TAGTTGAAATTGATGAGCAA+TGG - chr4_3:38482239-38482258 None:intergenic 30.0%
ATTGCTCATCAATTTCAACT+AGG + chr4_3:38482238-38482257 Msa0640290:CDS 30.0%
! GCTATATAATTTTACTGGCA+AGG + chr4_3:38482260-38482279 Msa0640290:CDS 30.0%
CATATTCATTGTCTAGATCT+GGG - chr4_3:38482296-38482315 None:intergenic 30.0%
TCAAACCACACTTATTGAAA+TGG + chr4_3:38482356-38482375 Msa0640290:CDS 30.0%
AGTCGTAATACATTTGATCT+TGG + chr4_3:38482387-38482406 Msa0640290:CDS 30.0%
TTAAAACCTTGAAGTAACTC+TGG - chr4_3:38480575-38480594 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG - chr4_3:38480668-38480687 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG - chr4_3:38480670-38480689 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTCA+AGG + chr4_3:38480752-38480771 Msa0640290:CDS 30.0%
ATACCTTGACAAAACAATCA+TGG - chr4_3:38480758-38480777 None:intergenic 30.0%
GTATATCGACAAATCAATGT+GGG - chr4_3:38480852-38480871 None:intergenic 30.0%
AGTATATCGACAAATCAATG+TGG - chr4_3:38480853-38480872 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG - chr4_3:38481303-38481322 None:intergenic 30.0%
ACTGTATATGTCAATAGACA+TGG + chr4_3:38482106-38482125 Msa0640290:intron 30.0%
ACCAAAACTATCATTCTTTC+AGG + chr4_3:38482192-38482211 Msa0640290:intron 30.0%
! ACCTGAAAGAATGATAGTTT+TGG - chr4_3:38482196-38482215 None:intergenic 30.0%
AGTTGAAATTGATGAGCAAT+GGG - chr4_3:38482238-38482257 None:intergenic 30.0%
TAGTTGAAATTGATGAGCAA+TGG - chr4_3:38482239-38482258 None:intergenic 30.0%
ATTGCTCATCAATTTCAACT+AGG + chr4_3:38482238-38482257 Msa0640290:CDS 30.0%
! GCTATATAATTTTACTGGCA+AGG + chr4_3:38482260-38482279 Msa0640290:CDS 30.0%
CATATTCATTGTCTAGATCT+GGG - chr4_3:38482296-38482315 None:intergenic 30.0%
TCAAACCACACTTATTGAAA+TGG + chr4_3:38482356-38482375 Msa0640290:CDS 30.0%
AGTCGTAATACATTTGATCT+TGG + chr4_3:38482387-38482406 Msa0640290:CDS 30.0%
GAACTAACATATGCATTGCA+GGG + chr4_3:38481019-38481038 Msa0640290:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG + chr4_3:38481100-38481119 Msa0640290:CDS 35.0%
ATCATGGCAGAACAAACAAA+TGG - chr4_3:38481660-38481679 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG + chr4_3:38481675-38481694 Msa0640290:intron 35.0%
AGTAGAAAAAACGGCTAGAT+GGG - chr4_3:38481930-38481949 None:intergenic 35.0%
GCATATTCATTGTCTAGATC+TGG - chr4_3:38482297-38482316 None:intergenic 35.0%
CAAATGTATTACGACTTCCA+GGG - chr4_3:38482383-38482402 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG - chr4_3:38482384-38482403 None:intergenic 35.0%
ACAAGCAAGTAGTTAAGAGA+AGG + chr4_3:38482415-38482434 Msa0640290:CDS 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG + chr4_3:38482416-38482435 Msa0640290:CDS 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG + chr4_3:38482417-38482436 Msa0640290:CDS 35.0%
!!! AATTCGTCCCATTTTTTCCA+TGG - chr4_3:38482547-38482566 None:intergenic 35.0%
GGACGAATTAATGTCAAGAT+TGG + chr4_3:38482558-38482577 Msa0640290:CDS 35.0%
AATGTCAAGATTGGAACTGA+AGG + chr4_3:38482567-38482586 Msa0640290:CDS 35.0%
GAACTAACATATGCATTGCA+GGG + chr4_3:38481019-38481038 Msa0640290:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG + chr4_3:38481100-38481119 Msa0640290:CDS 35.0%
ATCATGGCAGAACAAACAAA+TGG - chr4_3:38481660-38481679 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG + chr4_3:38481675-38481694 Msa0640290:intron 35.0%
AGTAGAAAAAACGGCTAGAT+GGG - chr4_3:38481930-38481949 None:intergenic 35.0%
GCATATTCATTGTCTAGATC+TGG - chr4_3:38482297-38482316 None:intergenic 35.0%
CAAATGTATTACGACTTCCA+GGG - chr4_3:38482383-38482402 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG - chr4_3:38482384-38482403 None:intergenic 35.0%
ACAAGCAAGTAGTTAAGAGA+AGG + chr4_3:38482415-38482434 Msa0640290:CDS 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG + chr4_3:38482416-38482435 Msa0640290:CDS 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG + chr4_3:38482417-38482436 Msa0640290:CDS 35.0%
!!! AATTCGTCCCATTTTTTCCA+TGG - chr4_3:38482547-38482566 None:intergenic 35.0%
GGACGAATTAATGTCAAGAT+TGG + chr4_3:38482558-38482577 Msa0640290:CDS 35.0%
AATGTCAAGATTGGAACTGA+AGG + chr4_3:38482567-38482586 Msa0640290:CDS 35.0%
GGAACTAACATATGCATTGC+AGG + chr4_3:38481018-38481037 Msa0640290:intron 40.0%
ACAAACCAACCAAGCTGAAA+AGG + chr4_3:38481072-38481091 Msa0640290:CDS 40.0%
! GAATAGCATCCTTTTCAGCT+TGG - chr4_3:38481084-38481103 None:intergenic 40.0%
TAGCCTCGAAGTGTAAGATT+TGG - chr4_3:38481106-38481125 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG + chr4_3:38481151-38481170 Msa0640290:CDS 40.0%
TTGTTCTGCCATGATTGACA+TGG + chr4_3:38481665-38481684 Msa0640290:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG - chr4_3:38481676-38481695 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG + chr4_3:38481674-38481693 Msa0640290:intron 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG - chr4_3:38481806-38481825 None:intergenic 40.0%
CTAACACTCTTTGGCAATGT+TGG + chr4_3:38481804-38481823 Msa0640290:CDS 40.0%
!! AATGACCTAGTCTTGCTTTC+TGG + chr4_3:38481837-38481856 Msa0640290:CDS 40.0%
CTGAACGCTAGGAATGATAA+TGG - chr4_3:38481892-38481911 None:intergenic 40.0%
TATCATTCCTAGCGTTCAGA+TGG + chr4_3:38481893-38481912 Msa0640290:intron 40.0%
ATCATTCCTAGCGTTCAGAT+GGG + chr4_3:38481894-38481913 Msa0640290:intron 40.0%
CAGTAGAAAAAACGGCTAGA+TGG - chr4_3:38481931-38481950 None:intergenic 40.0%
CGTTAGCGCAGTAGAAAAAA+CGG - chr4_3:38481939-38481958 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG - chr4_3:38482364-38482383 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG + chr4_3:38482363-38482382 Msa0640290:CDS 40.0%
TAAGCAATGCAGCATCTGAT+TGG - chr4_3:38482449-38482468 None:intergenic 40.0%
TACTGAATTTGGAAGGTCCA+TGG + chr4_3:38482527-38482546 Msa0640290:CDS 40.0%
TGGAAGGTCCATGGAAAAAA+TGG + chr4_3:38482536-38482555 Msa0640290:CDS 40.0%
GGAAGGTCCATGGAAAAAAT+GGG + chr4_3:38482537-38482556 Msa0640290:CDS 40.0%
GGAACTAACATATGCATTGC+AGG + chr4_3:38481018-38481037 Msa0640290:intron 40.0%
ACAAACCAACCAAGCTGAAA+AGG + chr4_3:38481072-38481091 Msa0640290:CDS 40.0%
! GAATAGCATCCTTTTCAGCT+TGG - chr4_3:38481084-38481103 None:intergenic 40.0%
TAGCCTCGAAGTGTAAGATT+TGG - chr4_3:38481106-38481125 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG + chr4_3:38481151-38481170 Msa0640290:CDS 40.0%
TTGTTCTGCCATGATTGACA+TGG + chr4_3:38481665-38481684 Msa0640290:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG - chr4_3:38481676-38481695 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG + chr4_3:38481674-38481693 Msa0640290:intron 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG - chr4_3:38481806-38481825 None:intergenic 40.0%
CTAACACTCTTTGGCAATGT+TGG + chr4_3:38481804-38481823 Msa0640290:CDS 40.0%
!! AATGACCTAGTCTTGCTTTC+TGG + chr4_3:38481837-38481856 Msa0640290:CDS 40.0%
CTGAACGCTAGGAATGATAA+TGG - chr4_3:38481892-38481911 None:intergenic 40.0%
TATCATTCCTAGCGTTCAGA+TGG + chr4_3:38481893-38481912 Msa0640290:intron 40.0%
ATCATTCCTAGCGTTCAGAT+GGG + chr4_3:38481894-38481913 Msa0640290:intron 40.0%
CAGTAGAAAAAACGGCTAGA+TGG - chr4_3:38481931-38481950 None:intergenic 40.0%
CGTTAGCGCAGTAGAAAAAA+CGG - chr4_3:38481939-38481958 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG - chr4_3:38482364-38482383 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG + chr4_3:38482363-38482382 Msa0640290:CDS 40.0%
TAAGCAATGCAGCATCTGAT+TGG - chr4_3:38482449-38482468 None:intergenic 40.0%
TACTGAATTTGGAAGGTCCA+TGG + chr4_3:38482527-38482546 Msa0640290:CDS 40.0%
TGGAAGGTCCATGGAAAAAA+TGG + chr4_3:38482536-38482555 Msa0640290:CDS 40.0%
GGAAGGTCCATGGAAAAAAT+GGG + chr4_3:38482537-38482556 Msa0640290:CDS 40.0%
ACTCATGCTCAATTGCAGCA+AGG + chr4_3:38480624-38480643 Msa0640290:CDS 45.0%
GAATGGAATCACACGTGTGT+TGG + chr4_3:38480899-38480918 Msa0640290:intron 45.0%
CTTCTGATGAAAGACGTGTC+TGG - chr4_3:38480946-38480965 None:intergenic 45.0%
ATTGCAGGGATGTGATGCAT+CGG + chr4_3:38481033-38481052 Msa0640290:intron 45.0%
! AGCATCCTTTTCAGCTTGGT+TGG - chr4_3:38481080-38481099 None:intergenic 45.0%
TGGGCGCGCGAAAAATTTAT+AGG + chr4_3:38481353-38481372 Msa0640290:intron 45.0%
GGGCGCGCGAAAAATTTATA+GGG + chr4_3:38481354-38481373 Msa0640290:intron 45.0%
ATTGACATGGATTTGCAGGG+TGG + chr4_3:38481678-38481697 Msa0640290:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG + chr4_3:38481679-38481698 Msa0640290:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG - chr4_3:38481705-38481724 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG + chr4_3:38481702-38481721 Msa0640290:CDS 45.0%
GAAGGTTCCAACAGGTAGAA+GGG + chr4_3:38481710-38481729 Msa0640290:CDS 45.0%
AGGACAGTGAGGTTGTGAAA+TGG - chr4_3:38481783-38481802 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG + chr4_3:38481795-38481814 Msa0640290:CDS 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG - chr4_3:38481803-38481822 None:intergenic 45.0%
GCATACCAGAAAGCAAGACT+AGG - chr4_3:38481845-38481864 None:intergenic 45.0%
AAAAAACGGCTAGATGGGCA+CGG - chr4_3:38481925-38481944 None:intergenic 45.0%
! CTTTCAGGTGCACACACAAT+TGG + chr4_3:38482207-38482226 Msa0640290:intron 45.0%
ACTCATGCTCAATTGCAGCA+AGG + chr4_3:38480624-38480643 Msa0640290:CDS 45.0%
GAATGGAATCACACGTGTGT+TGG + chr4_3:38480899-38480918 Msa0640290:intron 45.0%
CTTCTGATGAAAGACGTGTC+TGG - chr4_3:38480946-38480965 None:intergenic 45.0%
ATTGCAGGGATGTGATGCAT+CGG + chr4_3:38481033-38481052 Msa0640290:intron 45.0%
! AGCATCCTTTTCAGCTTGGT+TGG - chr4_3:38481080-38481099 None:intergenic 45.0%
TGGGCGCGCGAAAAATTTAT+AGG + chr4_3:38481353-38481372 Msa0640290:intron 45.0%
GGGCGCGCGAAAAATTTATA+GGG + chr4_3:38481354-38481373 Msa0640290:intron 45.0%
ATTGACATGGATTTGCAGGG+TGG + chr4_3:38481678-38481697 Msa0640290:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG + chr4_3:38481679-38481698 Msa0640290:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG - chr4_3:38481705-38481724 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG + chr4_3:38481702-38481721 Msa0640290:CDS 45.0%
GAAGGTTCCAACAGGTAGAA+GGG + chr4_3:38481710-38481729 Msa0640290:CDS 45.0%
AGGACAGTGAGGTTGTGAAA+TGG - chr4_3:38481783-38481802 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG + chr4_3:38481795-38481814 Msa0640290:CDS 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG - chr4_3:38481803-38481822 None:intergenic 45.0%
GCATACCAGAAAGCAAGACT+AGG - chr4_3:38481845-38481864 None:intergenic 45.0%
AAAAAACGGCTAGATGGGCA+CGG - chr4_3:38481925-38481944 None:intergenic 45.0%
! CTTTCAGGTGCACACACAAT+TGG + chr4_3:38482207-38482226 Msa0640290:intron 45.0%
GGGAAGCCAGAGTTACTTCA+AGG + chr4_3:38480566-38480585 Msa0640290:CDS 50.0%
GCTGCTAGTGATGGTACACT+GGG - chr4_3:38480714-38480733 None:intergenic 50.0%
AGCTGCTAGTGATGGTACAC+TGG - chr4_3:38480715-38480734 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG - chr4_3:38480723-38480742 None:intergenic 50.0%
CACTAGCAGCTGCACTCATA+AGG + chr4_3:38480724-38480743 Msa0640290:CDS 50.0%
CAGCACAAGAGACAACACCA+GGG - chr4_3:38481171-38481190 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG - chr4_3:38481172-38481191 None:intergenic 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG + chr4_3:38481688-38481707 Msa0640290:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG + chr4_3:38481709-38481728 Msa0640290:CDS 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr4_3:38481714-38481733 Msa0640290:CDS 50.0%
ATGCCATCCCTTCTACCTGT+TGG - chr4_3:38481720-38481739 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG - chr4_3:38481773-38481792 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG - chr4_3:38481777-38481796 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG - chr4_3:38481794-38481813 None:intergenic 50.0%
AAAAACGGCTAGATGGGCAC+GGG - chr4_3:38481924-38481943 None:intergenic 50.0%
GGGAAGCCAGAGTTACTTCA+AGG + chr4_3:38480566-38480585 Msa0640290:CDS 50.0%
GCTGCTAGTGATGGTACACT+GGG - chr4_3:38480714-38480733 None:intergenic 50.0%
AGCTGCTAGTGATGGTACAC+TGG - chr4_3:38480715-38480734 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG - chr4_3:38480723-38480742 None:intergenic 50.0%
CACTAGCAGCTGCACTCATA+AGG + chr4_3:38480724-38480743 Msa0640290:CDS 50.0%
CAGCACAAGAGACAACACCA+GGG - chr4_3:38481171-38481190 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG - chr4_3:38481172-38481191 None:intergenic 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG + chr4_3:38481688-38481707 Msa0640290:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG + chr4_3:38481709-38481728 Msa0640290:CDS 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr4_3:38481714-38481733 Msa0640290:CDS 50.0%
ATGCCATCCCTTCTACCTGT+TGG - chr4_3:38481720-38481739 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG - chr4_3:38481773-38481792 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG - chr4_3:38481777-38481796 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG - chr4_3:38481794-38481813 None:intergenic 50.0%
AAAAACGGCTAGATGGGCAC+GGG - chr4_3:38481924-38481943 None:intergenic 50.0%
!! GCAGGGTGGGCCTTATTGGA+AGG + chr4_3:38481692-38481711 Msa0640290:intron 60.0%
GGTGTGCCCATCTGAACGCT+AGG - chr4_3:38481903-38481922 None:intergenic 60.0%
!! GCAGGGTGGGCCTTATTGGA+AGG + chr4_3:38481692-38481711 Msa0640290:intron 60.0%
GGTGTGCCCATCTGAACGCT+AGG - chr4_3:38481903-38481922 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 38480564 38482623 38480564 ID=Msa0640290;Name=Msa0640290
chr4_3 mRNA 38480564 38482623 38480564 ID=Msa0640290-mRNA-1;Parent=Msa0640290;Name=Msa0640290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|324
chr4_3 exon 38480564 38480773 38480564 ID=Msa0640290-mRNA-1:exon:8675;Parent=Msa0640290-mRNA-1
chr4_3 exon 38481040 38481231 38481040 ID=Msa0640290-mRNA-1:exon:8676;Parent=Msa0640290-mRNA-1
chr4_3 exon 38481696 38481858 38481696 ID=Msa0640290-mRNA-1:exon:8677;Parent=Msa0640290-mRNA-1
chr4_3 exon 38482214 38482623 38482214 ID=Msa0640290-mRNA-1:exon:8678;Parent=Msa0640290-mRNA-1
chr4_3 CDS 38480564 38480773 38480564 ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
chr4_3 CDS 38481040 38481231 38481040 ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
chr4_3 CDS 38481696 38481858 38481696 ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
chr4_3 CDS 38482214 38482623 38482214 ID=Msa0640290-mRNA-1:cds;Parent=Msa0640290-mRNA-1
Gene Sequence

>Msa0640290

ATGGGAAGCCAGAGTTACTTCAAGGTTTTAATTATTTGTCTTATAGCAATAATTGGATCAACTCATGCTCAATTGCAGCAAGGTTTCTATGCTAAAAGCTGCCCCAAAGCTGAACAAATTGTTTTGAAGTATGTTCATGAACACATTCCCAGTGTACCATCACTAGCAGCTGCACTCATAAGGCTACATTTCCATGATTGTTTTGTCAAGGGATGTGATGCATCGGTACTTCTGAACTCAACACAAACCAACCAAGCTGAAAAGGATGCTATTCCAAATCTTACACTTCGAGGCTATGAATTCATTGACACAATAAAGAGTCTTGTTGAAAAAGAATGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTTTGACTGCTAGAGATTCTATTCATTCTATTGGTGGGCCTTATTGGAAGGTTCCAACAGGTAGAAGGGATGGCATCATATCTAAAGCAGCAGATACTTTTACTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCTCCTAACACTCTTTGGCAATGTTGGACTTGATGCAAATGACCTAGTCTTGCTTTCTGGTGCACACACAATTGGTGTTTCCCATTGCTCATCAATTTCAACTAGGCTATATAATTTTACTGGCAAGGGTGATCAAGACCCAGATCTAGACAATGAATATGCTAAGAATTTGAAAACATTTAAGTGTAAAAATATCAATGATCAAACCACACTTATTGAAATGGACCCTGGAAGTCGTAATACATTTGATCTTGGCTATTACAAGCAAGTAGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTTAAAAGCTCTACAACAAGATCTATTCTTGCACAACATCTTCAATCGAATGAAAAATTCTTTACTGAATTTGGAAGGTCCATGGAAAAAATGGGACGAATTAATGTCAAGATTGGAACTGAAGGAGAGATCAGAAAGCACTGTGCATTTATAAATTAA

Protein sequence

>Msa0640290

MGSQSYFKVLIICLIAIIGSTHAQLQQGFYAKSCPKAEQIVLKYVHEHIPSVPSLAAALIRLHFHDCFVKGCDASVLLNSTQTNQAEKDAIPNLTLRGYEFIDTIKSLVEKECPGVVSCADILTLTARDSIHSIGGPYWKVPTGRRDGIISKAADTFTSLPAPFHNLTVLLTLFGNVGLDANDLVLLSGAHTIGVSHCSSISTRLYNFTGKGDQDPDLDNEYAKNLKTFKCKNINDQTTLIEMDPGSRNTFDLGYYKQVVKRRGLFQSDAALLKSSTTRSILAQHLQSNEKFFTEFGRSMEKMGRINVKIGTEGEIRKHCAFIN*