Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112300 | XP_013469227.1 | 93.720 | 207 | 11 | 1 | 1 | 205 | 1 | 207 | 8.93e-104 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112300 | sp|F6HQ26|RU1C_VITVI | 65.278 | 216 | 61 | 5 | 1 | 205 | 1 | 213 | 1.55e-75 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112300 | A0A072VYW7 | 93.720 | 207 | 11 | 1 | 1 | 205 | 1 | 207 | 4.27e-104 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0112300 | -0.817157 | 3.814255e-52 | -8.615850e-47 |
| Msa0006880 | Msa0112300 | -0.825613 | 4.261402e-54 | -8.615850e-47 |
| Msa0008840 | Msa0112300 | -0.810941 | 8.974556e-51 | -8.615850e-47 |
| Msa0050520 | Msa0112300 | 0.800915 | 1.151858e-48 | -8.615850e-47 |
| Msa0052300 | Msa0112300 | 0.818801 | 1.621854e-52 | -8.615850e-47 |
| Msa0052350 | Msa0112300 | 0.874355 | 7.204122e-68 | -8.615850e-47 |
| Msa0055150 | Msa0112300 | -0.829771 | 4.272928e-55 | -8.615850e-47 |
| Msa0082830 | Msa0112300 | 0.942439 | 7.173368e-102 | -8.615850e-47 |
| Msa0090030 | Msa0112300 | -0.821029 | 5.017659e-53 | -8.615850e-47 |
| Msa0092170 | Msa0112300 | -0.804602 | 1.996699e-49 | -8.615850e-47 |
| Msa0097360 | Msa0112300 | 0.854820 | 9.541600e-62 | -8.615850e-47 |
| Msa0103070 | Msa0112300 | -0.800796 | 1.218370e-48 | -8.615850e-47 |
| Msa0112300 | Msa0131450 | -0.809319 | 2.006264e-50 | -8.615850e-47 |
| Msa0112300 | Msa0173330 | -0.810013 | 1.423302e-50 | -8.615850e-47 |
| Msa0112300 | Msa0175290 | 0.996897 | 8.327439e-234 | -8.615850e-47 |
| Msa0112300 | Msa0208810 | -0.807789 | 4.257047e-50 | -8.615850e-47 |
| Msa0112300 | Msa0212750 | 0.828883 | 7.019187e-55 | -8.615850e-47 |
| Msa0112300 | Msa0229360 | -0.803789 | 2.947598e-49 | -8.615850e-47 |
| Msa0112300 | Msa0295000 | 0.825302 | 5.048117e-54 | -8.615850e-47 |
| Msa0112300 | Msa0370160 | 0.820685 | 6.019940e-53 | -8.615850e-47 |
| Msa0112300 | Msa0437690 | 0.811230 | 7.767589e-51 | -8.615850e-47 |
| Msa0112300 | Msa0439890 | -0.806056 | 9.899135e-50 | -8.615850e-47 |
| Msa0112300 | Msa0465960 | -0.805625 | 1.219451e-49 | -8.615850e-47 |
| Msa0112300 | Msa0509950 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0112300 | Msa0668460 | 0.803384 | 3.577546e-49 | -8.615850e-47 |
| Msa0112300 | Msa0693790 | -0.800594 | 1.339495e-48 | -8.615850e-47 |
| Msa0112300 | Msa0707390 | -0.813029 | 3.148115e-51 | -8.615850e-47 |
| Msa0112300 | Msa0716420 | 0.820729 | 5.881143e-53 | -8.615850e-47 |
| Msa0112300 | Msa0720370 | -0.800088 | 1.698337e-48 | -8.615850e-47 |
| Msa0112300 | Msa0746280 | 0.817511 | 3.175081e-52 | -8.615850e-47 |
| Msa0112300 | Msa0790170 | 0.924802 | 4.328590e-90 | -8.615850e-47 |
| Msa0112300 | Msa0799010 | 0.827471 | 1.536385e-54 | -8.615850e-47 |
| Msa0112300 | Msa0818770 | -0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0112300 | Msa0837420 | 0.811705 | 6.125526e-51 | -8.615850e-47 |
| Msa0112300 | Msa0898890 | -0.803984 | 2.684769e-49 | -8.615850e-47 |
| Msa0112300 | Msa0901160 | 0.810750 | 9.869797e-51 | -8.615850e-47 |
| Msa0112300 | Msa0924150 | 0.842832 | 2.031795e-58 | -8.615850e-47 |
| Msa0112300 | Msa0947530 | 0.804146 | 2.485287e-49 | -8.615850e-47 |
| Msa0112300 | Msa0963090 | 0.812240 | 4.682923e-51 | -8.615850e-47 |
| Msa0112300 | Msa0966720 | 0.847854 | 8.885953e-60 | -8.615850e-47 |
| Msa0112300 | Msa1002600 | 0.830485 | 2.860568e-55 | -8.615850e-47 |
| Msa0112300 | Msa1033520 | -0.800822 | 1.203459e-48 | -8.615850e-47 |
| Msa0112300 | Msa1038210 | 0.816238 | 6.131095e-52 | -8.615850e-47 |
| Msa0112300 | Msa1048750 | 0.817871 | 2.633327e-52 | -8.615850e-47 |
| Msa0112300 | Msa1048760 | 0.843408 | 1.427327e-58 | -8.615850e-47 |
| Msa0112300 | Msa1069660 | 0.811838 | 5.729152e-51 | -8.615850e-47 |
| Msa0112300 | Msa1084500 | 0.842107 | 3.164409e-58 | -8.615850e-47 |
| Msa0112300 | Msa1098720 | 0.813850 | 2.077544e-51 | -8.615850e-47 |
| Msa0112300 | Msa1100520 | 0.812165 | 4.864123e-51 | -8.615850e-47 |
| Msa0112300 | Msa1100530 | 0.859407 | 4.226228e-63 | -8.615850e-47 |
| Msa0112300 | Msa1125790 | 0.844674 | 6.532589e-59 | -8.615850e-47 |
| Msa0112300 | Msa1126120 | 0.809486 | 1.848054e-50 | -8.615850e-47 |
| Msa0112300 | Msa1172130 | 0.849147 | 3.896083e-60 | -8.615850e-47 |
| Msa0112300 | Msa1207730 | -0.821366 | 4.195456e-53 | -8.615850e-47 |
| Msa0112300 | Msa1236070 | 0.815748 | 7.886921e-52 | -8.615850e-47 |
| Msa0112300 | Msa1298550 | 0.815710 | 8.041344e-52 | -8.615850e-47 |
| Msa0112300 | Msa1317810 | 0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa0112300 | Msa1330890 | 0.849281 | 3.576670e-60 | -8.615850e-47 |
| Msa0112300 | Msa1363700 | -0.806585 | 7.658192e-50 | -8.615850e-47 |
| Msa0112300 | Msa1365860 | -0.820345 | 7.205225e-53 | -8.615850e-47 |
| Msa0112300 | Msa1371090 | -0.806627 | 7.505044e-50 | -8.615850e-47 |
| Msa0112300 | Msa1418960 | 0.886049 | 4.793171e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112300 | MtrunA17_Chr1g0196141 | 93.720 | 207 | 11 | 1 | 1 | 205 | 1 | 207 | 8.22e-108 | 308 |
| Msa0112300 | MtrunA17_Chr7g0268561 | 68.317 | 202 | 56 | 3 | 1 | 196 | 1 | 200 | 1.86e-68 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112300 | AT4G03120.1 | 63.043 | 138 | 30 | 4 | 1 | 137 | 1 | 118 | 2.13e-44 | 147 |
Find 108 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTTGTTGTTGAATA+AGG | 0.184258 | 1_3:+26856883 | None:intergenic |
| TATTTAGCTGACCTGGTATC+TGG | 0.201831 | 1_3:+26854189 | None:intergenic |
| CCTCGACCTTTACCTGTTCC+TGG | 0.225295 | 1_3:-26854742 | Msa0112300:CDS |
| TTGTTGTGTAAATTATTAAA+TGG | 0.248761 | 1_3:-26853610 | Msa0112300:three_prime_UTR |
| TTAGTTGCGTGTAAATTATT+TGG | 0.249582 | 1_3:-26853569 | Msa0112300:three_prime_UTR |
| GTTAGAAAGCAGCATAATTC+TGG | 0.274012 | 1_3:-26855095 | Msa0112300:CDS |
| TCTGAATATGGCCAAATATA+TGG | 0.293240 | 1_3:+26853698 | None:intergenic |
| ATCGCGAAAGTTCCACAGTT+TGG | 0.312398 | 1_3:-26856957 | Msa0112300:five_prime_UTR |
| CCGTTGATCAATTAAACTTT+GGG | 0.329708 | 1_3:+26854924 | None:intergenic |
| TTCTAATGGTGCTCCCTCTA+TGG | 0.335322 | 1_3:-26854102 | Msa0112300:CDS |
| ACTCGCACAAGCCATATATT+TGG | 0.335520 | 1_3:-26853709 | Msa0112300:three_prime_UTR |
| GTACATGGTCTCTCTGAATA+TGG | 0.340917 | 1_3:+26853686 | None:intergenic |
| TCCGTTGATCAATTAAACTT+TGG | 0.357282 | 1_3:+26854923 | None:intergenic |
| TCGCGAAAGTTCCACAGTTT+GGG | 0.362917 | 1_3:-26856956 | Msa0112300:five_prime_UTR |
| GGTGGTGCTGTGGTGCTTCC+AGG | 0.370818 | 1_3:+26854125 | None:intergenic |
| GGCATTGGTGGTTGACCTCC+AGG | 0.381491 | 1_3:+26854784 | None:intergenic |
| AATCCACCGGCACCATCATC+TGG | 0.382484 | 1_3:-26854056 | Msa0112300:CDS |
| ATTTAGCTGACCTGGTATCT+GGG | 0.382496 | 1_3:+26854190 | None:intergenic |
| GAAGAAAACAGGCTATTTGC+AGG | 0.396518 | 1_3:-26853882 | Msa0112300:three_prime_UTR |
| CTCGACCTTTACCTGTTCCT+GGG | 0.409983 | 1_3:-26854741 | Msa0112300:CDS |
| GGCAATACAGGAGGAAGGTT+TGG | 0.410837 | 1_3:+26854826 | None:intergenic |
| TTGAGCATTGGAATTGGAAT+TGG | 0.414958 | 1_3:+26854019 | None:intergenic |
| TCACCTGGTGCCCCAGGAAC+AGG | 0.415915 | 1_3:+26854730 | None:intergenic |
| TCTCATTTGTTTACTGAATG+AGG | 0.420396 | 1_3:-26853732 | Msa0112300:three_prime_UTR |
| ATCATTTGTGGCATGGTGTT+AGG | 0.420752 | 1_3:+26854230 | None:intergenic |
| AGGTGCTTGAGCATTGGAAT+TGG | 0.425185 | 1_3:+26854013 | None:intergenic |
| TTCTAATAATTTAAAGTACA+TGG | 0.431090 | 1_3:+26853671 | None:intergenic |
| GGAGCGAATGAAGGTGGCCT+TGG | 0.436210 | 1_3:+26854161 | None:intergenic |
| TGCTTCCAGGAACTGTTGGT+GGG | 0.436884 | 1_3:+26854138 | None:intergenic |
| TGTGGGTTATAATAATCTAA+TGG | 0.444341 | 1_3:-26854857 | Msa0112300:CDS |
| GTGCTTCCAGGAACTGTTGG+TGG | 0.445166 | 1_3:+26854137 | None:intergenic |
| TGTGCTTTCAGGCTAATGTA+AGG | 0.448575 | 1_3:-26854978 | Msa0112300:intron |
| CAACGGATCAAAGAACATCT+TGG | 0.452716 | 1_3:-26854907 | Msa0112300:CDS |
| CCAGGTCATTGATTGCTCTC+AGG | 0.456760 | 1_3:+26853993 | None:intergenic |
| CTTCCAGGAACTGTTGGTGG+GGG | 0.460489 | 1_3:+26854140 | None:intergenic |
| GTGGTGCTTCCAGGAACTGT+TGG | 0.469297 | 1_3:+26854134 | None:intergenic |
| CGGTGGATTGGCTTGATACA+TGG | 0.471791 | 1_3:+26854070 | None:intergenic |
| CGAATGAAGGTGGCCTTGGT+AGG | 0.473183 | 1_3:+26854165 | None:intergenic |
| AACGGATCAAAGAACATCTT+GGG | 0.474763 | 1_3:-26854906 | Msa0112300:CDS |
| ATAGAGGGAGCACCATTAGA+AGG | 0.475238 | 1_3:+26854104 | None:intergenic |
| ACCACAGCACCACCTTCTAA+TGG | 0.475930 | 1_3:-26854116 | Msa0112300:CDS |
| CCGTAGCTCAGGAAGAAAAC+AGG | 0.479414 | 1_3:-26853893 | Msa0112300:three_prime_UTR |
| CCAGGTGGAGGCATCATTTG+TGG | 0.479641 | 1_3:+26854218 | None:intergenic |
| GGTGGTTGACCTCCAGGAAT+GGG | 0.482419 | 1_3:+26854790 | None:intergenic |
| CTCCAGGAATGGGAAATCTC+GGG | 0.485227 | 1_3:+26854800 | None:intergenic |
| TTACCTGTTCCTGGGGCACC+AGG | 0.487603 | 1_3:-26854733 | Msa0112300:intron |
| TTCTTCAAATTGCTGATAGT+AGG | 0.492796 | 1_3:+26854954 | None:intergenic |
| GCTCTCAGGTGCTTGAGCAT+TGG | 0.493534 | 1_3:+26854007 | None:intergenic |
| AGATGATGGTGCCGGTGGAT+TGG | 0.502122 | 1_3:+26854058 | None:intergenic |
| GGCATGAGAGGTCTGAATCC+TGG | 0.508100 | 1_3:+26854763 | None:intergenic |
| TGGTGGTTGACCTCCAGGAA+TGG | 0.511144 | 1_3:+26854789 | None:intergenic |
| ACAGGCTATTTGCAGGGACT+CGG | 0.513648 | 1_3:-26853875 | Msa0112300:three_prime_UTR |
| CATGGCTGATGATGCCATAG+AGG | 0.518907 | 1_3:+26854088 | None:intergenic |
| CCTCCAGGAATGGGAAATCT+CGG | 0.519818 | 1_3:+26854799 | None:intergenic |
| TTTAGCTGACCTGGTATCTG+GGG | 0.521283 | 1_3:+26854191 | None:intergenic |
| GCACCATCATCTGGAGGGTA+TGG | 0.522073 | 1_3:-26854047 | Msa0112300:CDS |
| TGATGAAAGGAGGTTGATGC+AGG | 0.524369 | 1_3:+26856916 | None:intergenic |
| TTATGCTGCTTTCTAACAGA+TGG | 0.527012 | 1_3:+26855101 | None:intergenic |
| GCTTCCAGGAACTGTTGGTG+GGG | 0.536029 | 1_3:+26854139 | None:intergenic |
| GGAGGTCAACCACCAATGCC+AGG | 0.536193 | 1_3:-26854781 | Msa0112300:CDS |
| AAACATTCACCTGGTGCCCC+AGG | 0.539144 | 1_3:+26854724 | None:intergenic |
| CCCAAAGTTTAATTGATCAA+CGG | 0.547338 | 1_3:-26854924 | Msa0112300:CDS |
| GGTGCCCCAGGAACAGGTAA+AGG | 0.553270 | 1_3:+26854736 | None:intergenic |
| TTACCATACCCTCCAGATGA+TGG | 0.555923 | 1_3:+26854044 | None:intergenic |
| GGTAGGGTATTTAGCTGACC+TGG | 0.559827 | 1_3:+26854182 | None:intergenic |
| GGTCTGAATCCTGGCATTGG+TGG | 0.562709 | 1_3:+26854772 | None:intergenic |
| TTAGCTGACCTGGTATCTGG+GGG | 0.565149 | 1_3:+26854192 | None:intergenic |
| GCGTGTAAATTATTTGGCAT+AGG | 0.568882 | 1_3:-26853563 | Msa0112300:three_prime_UTR |
| CCAGGAACAGGTAAAGGTCG+AGG | 0.570796 | 1_3:+26854742 | None:intergenic |
| CCTCCAGATGATGGTGCCGG+TGG | 0.578973 | 1_3:+26854053 | None:intergenic |
| TACCCTCCAGATGATGGTGC+CGG | 0.589060 | 1_3:+26854050 | None:intergenic |
| CACAAGTTAGAAGAAGATGA+AGG | 0.589879 | 1_3:+26856834 | None:intergenic |
| GAATGAAGGTGGCCTTGGTA+GGG | 0.590337 | 1_3:+26854166 | None:intergenic |
| AGGAACTGATCACTGATGAA+AGG | 0.592541 | 1_3:+26856903 | None:intergenic |
| GCACTCAAACAGCCATGCCT+CGG | 0.592680 | 1_3:-26856774 | Msa0112300:intron |
| CCTGAGAGCAATCAATGACC+TGG | 0.596965 | 1_3:-26853993 | Msa0112300:exon |
| TGGAGGCATCATTTGTGGCA+TGG | 0.600454 | 1_3:+26854223 | None:intergenic |
| CCACAAATGATGCCTCCACC+TGG | 0.601830 | 1_3:-26854218 | Msa0112300:CDS |
| GGAAGCAACTTACAGAATCG+TGG | 0.602897 | 1_3:+26856628 | None:intergenic |
| CAACAACAACAATAAGCTGA+AGG | 0.608857 | 1_3:-26856876 | Msa0112300:five_prime_UTR |
| AGAGGTCTGAATCCTGGCAT+TGG | 0.609422 | 1_3:+26854769 | None:intergenic |
| GAAGCAACTTACAGAATCGT+GGG | 0.610854 | 1_3:+26856629 | None:intergenic |
| TGAGTTGCAGTACCGAGGCA+TGG | 0.613245 | 1_3:+26856762 | None:intergenic |
| TCCAGGAATGGGAAATCTCG+GGG | 0.614934 | 1_3:+26854801 | None:intergenic |
| GAAGAAGATGAAGGATGATG+AGG | 0.619278 | 1_3:+26856843 | None:intergenic |
| ATGGCTGATGATGCCATAGA+GGG | 0.623817 | 1_3:+26854089 | None:intergenic |
| ACCATTAGAAGGTGGTGCTG+TGG | 0.626785 | 1_3:+26854115 | None:intergenic |
| AAGAAAACAGGCTATTTGCA+GGG | 0.627036 | 1_3:-26853881 | Msa0112300:three_prime_UTR |
| CCACCGGCACCATCATCTGG+AGG | 0.638593 | 1_3:-26854053 | Msa0112300:CDS |
| AATTTCATACAAGTTTGACC+AGG | 0.641105 | 1_3:+26853975 | None:intergenic |
| TCGACCTTTACCTGTTCCTG+GGG | 0.642630 | 1_3:-26854740 | Msa0112300:CDS |
| CATGTATCAAGCCAATCCAC+CGG | 0.647787 | 1_3:-26854069 | Msa0112300:CDS |
| TTGTGGCATGGTGTTAGGTG+CGG | 0.648556 | 1_3:+26854235 | None:intergenic |
| CACCGGCACCATCATCTGGA+GGG | 0.651394 | 1_3:-26854052 | Msa0112300:CDS |
| GGGGTGGCAATACAGGAGGA+AGG | 0.651955 | 1_3:+26854821 | None:intergenic |
| AACTGATCACTGATGAAAGG+AGG | 0.654016 | 1_3:+26856906 | None:intergenic |
| GGCATGGTGTTAGGTGCGGA+AGG | 0.654135 | 1_3:+26854239 | None:intergenic |
| GGTAAAGGTCGAGGCATGAG+AGG | 0.654248 | 1_3:+26854751 | None:intergenic |
| TCATTCAGTAAACAAATGAG+AGG | 0.660707 | 1_3:+26853734 | None:intergenic |
| ATGCGTCTATGCCCAAACTG+TGG | 0.663756 | 1_3:+26856945 | None:intergenic |
| CCGAGATTTCCCATTCCTGG+AGG | 0.676581 | 1_3:-26854799 | Msa0112300:CDS |
| GAGGGAGCACCATTAGAAGG+TGG | 0.677405 | 1_3:+26854107 | None:intergenic |
| TAGCTGACCTGGTATCTGGG+GGG | 0.680021 | 1_3:+26854193 | None:intergenic |
| GTCAGCTAAATACCCTACCA+AGG | 0.684554 | 1_3:-26854178 | Msa0112300:CDS |
| CCAGGAATGGGAAATCTCGG+GGG | 0.691329 | 1_3:+26854802 | None:intergenic |
| AGAACATCTTGGGCAAGCTG+CGG | 0.693174 | 1_3:-26854896 | Msa0112300:CDS |
| TAATTCTGGTTATAAACACA+AGG | 0.696885 | 1_3:-26855081 | Msa0112300:intron |
| ATGGAAAATAGTATCGAACA+AGG | 0.711480 | 1_3:+26853916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATCAAAATCAAAAT+TGG | - | chr1_3:26854838-26854857 | Msa0112300:CDS | 10.0% |
| !! | AATGAACTTAAAAAAATGAA+TGG | + | chr1_3:26854004-26854023 | None:intergenic | 15.0% |
| !! | AAAAGATTATTGGAAAAATA+GGG | - | chr1_3:26854291-26854310 | Msa0112300:intron | 15.0% |
| !!! | ATCTTGAAAGTATAATTTAA+TGG | + | chr1_3:26855898-26855917 | None:intergenic | 15.0% |
| !! | ATATGATAGAATAAATTATC+CGG | + | chr1_3:26856207-26856226 | None:intergenic | 15.0% |
| !!! | TTCTAATAATTTAAAGTACA+TGG | + | chr1_3:26856836-26856855 | None:intergenic | 15.0% |
| !! | TTGTTGTGTAAATTATTAAA+TGG | - | chr1_3:26856894-26856913 | Msa0112300:five_prime_UTR | 15.0% |
| !! | AAATGTTATGAAATGAATGA+AGG | + | chr1_3:26853793-26853812 | None:intergenic | 20.0% |
| !! | GAAAAGATTATTGGAAAAAT+AGG | - | chr1_3:26854290-26854309 | Msa0112300:intron | 20.0% |
| !!! | AAATTTTGAACACAACAAAA+CGG | + | chr1_3:26854746-26854765 | None:intergenic | 20.0% |
| !! | AATGAAAGTTGAAATTAGAA+AGG | - | chr1_3:26854911-26854930 | Msa0112300:CDS | 20.0% |
| !! | ATGAAAGTTGAAATTAGAAA+GGG | - | chr1_3:26854912-26854931 | Msa0112300:CDS | 20.0% |
| !! | TACGTATAATATCCATTAAA+CGG | - | chr1_3:26855036-26855055 | Msa0112300:intron | 20.0% |
| !!! | ATAAAAGTGTATTTCAATCT+AGG | - | chr1_3:26855476-26855495 | Msa0112300:intron | 20.0% |
| !! | AACATGATATTCAAACTAAA+AGG | + | chr1_3:26855989-26856008 | None:intergenic | 20.0% |
| !! | TCTATCATATCTAATATAAG+TGG | - | chr1_3:26856217-26856236 | Msa0112300:intron | 20.0% |
| !!! | TAATATAAGTGGTTTTCAAT+TGG | - | chr1_3:26856228-26856247 | Msa0112300:intron | 20.0% |
| !! | CTTATTGTTGTTGTTGAATA+AGG | + | chr1_3:26853624-26853643 | None:intergenic | 25.0% |
| ! | CTATTGAAATCAAAGTGAAA+GGG | + | chr1_3:26853924-26853943 | None:intergenic | 25.0% |
| ! | ATTACTTGTCTTACAATTGT+TGG | + | chr1_3:26854113-26854132 | None:intergenic | 25.0% |
| ! | TAAGACAAGTAATCTTGTAT+CGG | - | chr1_3:26854120-26854139 | Msa0112300:CDS | 25.0% |
| !! | CCAATAATCTTTTCTACTAT+GGG | + | chr1_3:26854284-26854303 | None:intergenic | 25.0% |
| !! | TCCAATAATCTTTTCTACTA+TGG | + | chr1_3:26854285-26854304 | None:intergenic | 25.0% |
| ! | TAATGAGTTAGATTGAAATG+TGG | - | chr1_3:26854456-26854475 | Msa0112300:intron | 25.0% |
| ! | ACCCTTTCAAATAATAAAGT+TGG | - | chr1_3:26854774-26854793 | Msa0112300:CDS | 25.0% |
| ! | GCCAACTTTATTATTTGAAA+GGG | + | chr1_3:26854778-26854797 | None:intergenic | 25.0% |
| ! | TTCACATCAATGAATTCATA+CGG | + | chr1_3:26854814-26854833 | None:intergenic | 25.0% |
| ! | CTAATTTCAACTTTCATTTC+TGG | + | chr1_3:26854909-26854928 | None:intergenic | 25.0% |
| ! | TATAATATCCATTAAACGGT+CGG | - | chr1_3:26855040-26855059 | Msa0112300:intron | 25.0% |
| !! | AGAAATTAATCTTTTGTTGC+TGG | + | chr1_3:26855255-26855274 | None:intergenic | 25.0% |
| ! | TCTTCAGAAACAATAAGAAA+GGG | + | chr1_3:26855286-26855305 | None:intergenic | 25.0% |
| ! | TTCTTCAGAAACAATAAGAA+AGG | + | chr1_3:26855287-26855306 | None:intergenic | 25.0% |
| !! | TAATTCTGGTTATAAACACA+AGG | - | chr1_3:26855423-26855442 | Msa0112300:intron | 25.0% |
| !! | TGTGGGTTATAATAATCTAA+TGG | - | chr1_3:26855647-26855666 | Msa0112300:intron | 25.0% |
| ! | CAGTCAAATACTTCAATAAT+AGG | + | chr1_3:26855847-26855866 | None:intergenic | 25.0% |
| ! | AATGAAAGCCAAAAATAATG+TGG | + | chr1_3:26855956-26855975 | None:intergenic | 25.0% |
| ! | AAAGGTTACATGTAAAGAAT+AGG | + | chr1_3:26856058-26856077 | None:intergenic | 25.0% |
| !!! | TATGTTTTGGTTTGGTTTTT+TGG | - | chr1_3:26856094-26856113 | Msa0112300:intron | 25.0% |
| !! | TATGTTCGATTTTTATGACT+AGG | - | chr1_3:26856732-26856751 | Msa0112300:intron | 25.0% |
| ! | TTAGTTGCGTGTAAATTATT+TGG | - | chr1_3:26856935-26856954 | Msa0112300:five_prime_UTR | 25.0% |
| AATGAAGGTTTGTGTGATTT+AGG | + | chr1_3:26853778-26853797 | None:intergenic | 30.0% | |
| CCTATTGAAATCAAAGTGAA+AGG | + | chr1_3:26853925-26853944 | None:intergenic | 30.0% | |
| ! | CCTTTCACTTTGATTTCAAT+AGG | - | chr1_3:26853922-26853941 | Msa0112300:three_prime_UTR | 30.0% |
| TCGTATCACATAAAACACTT+AGG | + | chr1_3:26854058-26854077 | None:intergenic | 30.0% | |
| AAAAACATTAGAGACAGAGT+TGG | - | chr1_3:26854251-26854270 | Msa0112300:intron | 30.0% | |
| AAAACATTAGAGACAGAGTT+GGG | - | chr1_3:26854252-26854271 | Msa0112300:intron | 30.0% | |
| CCCATAGTAGAAAAGATTAT+TGG | - | chr1_3:26854281-26854300 | Msa0112300:intron | 30.0% | |
| ! | GACTTGTAGATTTTGTAGTA+AGG | - | chr1_3:26854341-26854360 | Msa0112300:intron | 30.0% |
| GGCCAACTTTATTATTTGAA+AGG | + | chr1_3:26854779-26854798 | None:intergenic | 30.0% | |
| CAAATAATAAAGTTGGCCAA+TGG | - | chr1_3:26854781-26854800 | Msa0112300:CDS | 30.0% | |
| AAATCAAAATTGGAAGACTC+TGG | - | chr1_3:26854848-26854867 | Msa0112300:CDS | 30.0% | |
| AAGAACAAACAGAAGTTAGA+CGG | - | chr1_3:26854962-26854981 | Msa0112300:CDS | 30.0% | |
| TATCGAAAATGTTTATCCTC+AGG | + | chr1_3:26855018-26855037 | None:intergenic | 30.0% | |
| CAATCTAGGTCATATTTATG+AGG | - | chr1_3:26855490-26855509 | Msa0112300:intron | 30.0% | |
| TGATATGTATTTGTGCTTTC+AGG | - | chr1_3:26855515-26855534 | Msa0112300:intron | 30.0% | |
| TTCTTCAAATTGCTGATAGT+AGG | + | chr1_3:26855553-26855572 | None:intergenic | 30.0% | |
| CCGTTGATCAATTAAACTTT+GGG | + | chr1_3:26855583-26855602 | None:intergenic | 30.0% | |
| CCCAAAGTTTAATTGATCAA+CGG | - | chr1_3:26855580-26855599 | Msa0112300:intron | 30.0% | |
| TCCGTTGATCAATTAAACTT+TGG | + | chr1_3:26855584-26855603 | None:intergenic | 30.0% | |
| CATGATTATGCACATCTTAA+TGG | - | chr1_3:26855926-26855945 | Msa0112300:intron | 30.0% | |
| ! | ATGGCTAACCACATTATTTT+TGG | - | chr1_3:26855945-26855964 | Msa0112300:intron | 30.0% |
| ! | CTATATGTTACTTGTGTCTT+TGG | - | chr1_3:26856009-26856028 | Msa0112300:intron | 30.0% |
| ! | GTTTTCAATTGGAGTTTTCA+GGG | - | chr1_3:26856239-26856258 | Msa0112300:intron | 30.0% |
| AATTTCATACAAGTTTGACC+AGG | + | chr1_3:26856532-26856551 | None:intergenic | 30.0% | |
| ! | ATGGAAAATAGTATCGAACA+AGG | + | chr1_3:26856591-26856610 | None:intergenic | 30.0% |
| TCATTCAGTAAACAAATGAG+AGG | + | chr1_3:26856773-26856792 | None:intergenic | 30.0% | |
| TCTCATTTGTTTACTGAATG+AGG | - | chr1_3:26856772-26856791 | Msa0112300:intron | 30.0% | |
| TCTGAATATGGCCAAATATA+TGG | + | chr1_3:26856809-26856828 | None:intergenic | 30.0% | |
| CAACAACAACAATAAGCTGA+AGG | - | chr1_3:26853628-26853647 | Msa0112300:three_prime_UTR | 35.0% | |
| CACAAGTTAGAAGAAGATGA+AGG | + | chr1_3:26853673-26853692 | None:intergenic | 35.0% | |
| !! | TTTGATTTTGCCCCATAACT+AGG | - | chr1_3:26853697-26853716 | Msa0112300:three_prime_UTR | 35.0% |
| ! | TTGATTTTGCCCCATAACTA+GGG | - | chr1_3:26853698-26853717 | Msa0112300:three_prime_UTR | 35.0% |
| AGCAAAAAACCCTAGTTATG+GGG | + | chr1_3:26853710-26853729 | None:intergenic | 35.0% | |
| CAGCAAAAAACCCTAGTTAT+GGG | + | chr1_3:26853711-26853730 | None:intergenic | 35.0% | |
| TTTGTGTGATTTAGGCTTGA+AGG | + | chr1_3:26853770-26853789 | None:intergenic | 35.0% | |
| ! | TTTCTTCGATTTTGCTTTGC+AGG | - | chr1_3:26853821-26853840 | Msa0112300:three_prime_UTR | 35.0% |
| ACATAATTAGCGATTGGTGA+GGG | + | chr1_3:26853900-26853919 | None:intergenic | 35.0% | |
| AACATAATTAGCGATTGGTG+AGG | + | chr1_3:26853901-26853920 | None:intergenic | 35.0% | |
| AAGGGAACATAATTAGCGAT+TGG | + | chr1_3:26853906-26853925 | None:intergenic | 35.0% | |
| ATGTGCACAACTACATTATG+TGG | - | chr1_3:26853954-26853973 | Msa0112300:three_prime_UTR | 35.0% | |
| !! | AAAGTACTGCTGAAGTTGAA+GGG | - | chr1_3:26854077-26854096 | Msa0112300:CDS | 35.0% |
| ! | CGCTTAATTTCCTTTTGTGT+TGG | + | chr1_3:26854169-26854188 | None:intergenic | 35.0% |
| AAACATTAGAGACAGAGTTG+GGG | - | chr1_3:26854253-26854272 | Msa0112300:intron | 35.0% | |
| ATTGGAAAAATAGGGTTACG+TGG | - | chr1_3:26854299-26854318 | Msa0112300:intron | 35.0% | |
| AAAAATAGGGTTACGTGGTT+TGG | - | chr1_3:26854304-26854323 | Msa0112300:intron | 35.0% | |
| AAAATAGGGTTACGTGGTTT+GGG | - | chr1_3:26854305-26854324 | Msa0112300:intron | 35.0% | |
| AGTAAGGAGAGTAGATTAGA+TGG | - | chr1_3:26854357-26854376 | Msa0112300:intron | 35.0% | |
| CAAAAGATAACCATGTAGGT+GGG | + | chr1_3:26854580-26854599 | None:intergenic | 35.0% | |
| ACAAAAGATAACCATGTAGG+TGG | + | chr1_3:26854581-26854600 | None:intergenic | 35.0% | |
| ! | ACCTACATGGTTATCTTTTG+TGG | - | chr1_3:26854580-26854599 | Msa0112300:intron | 35.0% |
| ACCACAAAAGATAACCATGT+AGG | + | chr1_3:26854584-26854603 | None:intergenic | 35.0% | |
| !! | CTTTTGTGGTAGCTAGTTTA+AGG | - | chr1_3:26854594-26854613 | Msa0112300:intron | 35.0% |
| CAATGAATTCATACGGTAGA+TGG | + | chr1_3:26854807-26854826 | None:intergenic | 35.0% | |
| GGGATTATGATTCTTGCTTA+TGG | - | chr1_3:26854932-26854951 | Msa0112300:CDS | 35.0% | |
| TCCAAAACCCTTAATTCCAA+TGG | - | chr1_3:26855146-26855165 | Msa0112300:intron | 35.0% | |
| ! | ACCATTGGAATTAAGGGTTT+TGG | + | chr1_3:26855150-26855169 | None:intergenic | 35.0% |
| AAACCCTTAATTCCAATGGT+AGG | - | chr1_3:26855150-26855169 | Msa0112300:intron | 35.0% | |
| AACCCTTAATTCCAATGGTA+GGG | - | chr1_3:26855151-26855170 | Msa0112300:intron | 35.0% | |
| TTCCCTACCATTGGAATTAA+GGG | + | chr1_3:26855156-26855175 | None:intergenic | 35.0% | |
| TTTCCCTACCATTGGAATTA+AGG | + | chr1_3:26855157-26855176 | None:intergenic | 35.0% | |
| CTAACATGCACTAGTTGTTT+AGG | + | chr1_3:26855199-26855218 | None:intergenic | 35.0% | |
| !! | TTATGCTGCTTTCTAACAGA+TGG | + | chr1_3:26855406-26855425 | None:intergenic | 35.0% |
| GTTAGAAAGCAGCATAATTC+TGG | - | chr1_3:26855409-26855428 | Msa0112300:intron | 35.0% | |
| AACGGATCAAAGAACATCTT+GGG | - | chr1_3:26855598-26855617 | Msa0112300:intron | 35.0% | |
| TACAAGCGCAACTAAAAGAA+AGG | + | chr1_3:26856076-26856095 | None:intergenic | 35.0% | |
| ! | TTAGTTGCGCTTGTATGTTT+TGG | - | chr1_3:26856081-26856100 | Msa0112300:intron | 35.0% |
| CGGTTTATAATGCTTGAACT+GGG | + | chr1_3:26856187-26856206 | None:intergenic | 35.0% | |
| CCAGTTCAAGCATTATAAAC+CGG | - | chr1_3:26856185-26856204 | Msa0112300:intron | 35.0% | |
| ! | GGTTTTCAATTGGAGTTTTC+AGG | - | chr1_3:26856238-26856257 | Msa0112300:intron | 35.0% |
| !! | TTGAGCATTGGAATTGGAAT+TGG | + | chr1_3:26856488-26856507 | None:intergenic | 35.0% |
| AAGAAAACAGGCTATTTGCA+GGG | - | chr1_3:26856623-26856642 | Msa0112300:intron | 35.0% | |
| GCGTGTAAATTATTTGGCAT+AGG | - | chr1_3:26856941-26856960 | Msa0112300:five_prime_UTR | 35.0% | |
| AACTGATCACTGATGAAAGG+AGG | + | chr1_3:26853601-26853620 | None:intergenic | 40.0% | |
| AGGAACTGATCACTGATGAA+AGG | + | chr1_3:26853604-26853623 | None:intergenic | 40.0% | |
| GAAGAAGATGAAGGATGATG+AGG | + | chr1_3:26853664-26853683 | None:intergenic | 40.0% | |
| GCAGCAAAAAACCCTAGTTA+TGG | + | chr1_3:26853712-26853731 | None:intergenic | 40.0% | |
| GAAGCAACTTACAGAATCGT+GGG | + | chr1_3:26853878-26853897 | None:intergenic | 40.0% | |
| !! | GAAAGTACTGCTGAAGTTGA+AGG | - | chr1_3:26854076-26854095 | Msa0112300:CDS | 40.0% |
| CTGGAAAGAACCAACACAAA+AGG | - | chr1_3:26854156-26854175 | Msa0112300:CDS | 40.0% | |
| AATTAAGCGTAGCAGAGATG+AGG | - | chr1_3:26854180-26854199 | Msa0112300:CDS | 40.0% | |
| AAGGAGAGTAGATTAGATGG+AGG | - | chr1_3:26854360-26854379 | Msa0112300:intron | 40.0% | |
| GAGGATAGACACATTACTAG+AGG | - | chr1_3:26854379-26854398 | Msa0112300:intron | 40.0% | |
| ACATTACTAGAGGCAGAGAA+AGG | - | chr1_3:26854389-26854408 | Msa0112300:intron | 40.0% | |
| ! | AAGCCTTATACCACTACATG+GGG | + | chr1_3:26854525-26854544 | None:intergenic | 40.0% |
| ! | CAAGCCTTATACCACTACAT+GGG | + | chr1_3:26854526-26854545 | None:intergenic | 40.0% |
| ! | TCAAGCCTTATACCACTACA+TGG | + | chr1_3:26854527-26854546 | None:intergenic | 40.0% |
| !! | TTTTTGTTTCCTTCCACACC+CGG | - | chr1_3:26854553-26854572 | Msa0112300:intron | 40.0% |
| CGGTGAAATGATGTTCTCTT+GGG | + | chr1_3:26854726-26854745 | None:intergenic | 40.0% | |
| ACGGTGAAATGATGTTCTCT+TGG | + | chr1_3:26854727-26854746 | None:intergenic | 40.0% | |
| !!! | TTTTGTGTTTCTGAAGCCTG+AGG | - | chr1_3:26854999-26855018 | Msa0112300:intron | 40.0% |
| ACATGCACTAGTTGTTTAGG+TGG | + | chr1_3:26855196-26855215 | None:intergenic | 40.0% | |
| CATATGCAAGTGTCTAGTTG+TGG | + | chr1_3:26855357-26855376 | None:intergenic | 40.0% | |
| TGTGCTTTCAGGCTAATGTA+AGG | - | chr1_3:26855526-26855545 | Msa0112300:intron | 40.0% | |
| CAACGGATCAAAGAACATCT+TGG | - | chr1_3:26855597-26855616 | Msa0112300:intron | 40.0% | |
| TATAAAAGCCGCGAAAGATG+TGG | + | chr1_3:26855812-26855831 | None:intergenic | 40.0% | |
| !!! | TGCGCTTGTATGTTTTGGTT+TGG | - | chr1_3:26856086-26856105 | Msa0112300:intron | 40.0% |
| ! | CTTTCTTGTGTCGAGAGTTT+TGG | - | chr1_3:26856149-26856168 | Msa0112300:intron | 40.0% |
| !!! | TGTCGAGAGTTTTGGAGAAT+CGG | - | chr1_3:26856157-26856176 | Msa0112300:intron | 40.0% |
| CCGGTTTATAATGCTTGAAC+TGG | + | chr1_3:26856188-26856207 | None:intergenic | 40.0% | |
| ATCATTTGTGGCATGGTGTT+AGG | + | chr1_3:26856277-26856296 | None:intergenic | 40.0% | |
| ATTTAGCTGACCTGGTATCT+GGG | + | chr1_3:26856317-26856336 | None:intergenic | 40.0% | |
| TATTTAGCTGACCTGGTATC+TGG | + | chr1_3:26856318-26856337 | None:intergenic | 40.0% | |
| GAAGAAAACAGGCTATTTGC+AGG | - | chr1_3:26856622-26856641 | Msa0112300:intron | 40.0% | |
| ACTCGCACAAGCCATATATT+TGG | - | chr1_3:26856795-26856814 | Msa0112300:five_prime_UTR | 40.0% | |
| GTACATGGTCTCTCTGAATA+TGG | + | chr1_3:26856821-26856840 | None:intergenic | 40.0% | |
| ATCGCGAAAGTTCCACAGTT+TGG | - | chr1_3:26853547-26853566 | Msa0112300:three_prime_UTR | 45.0% | |
| TCGCGAAAGTTCCACAGTTT+GGG | - | chr1_3:26853548-26853567 | Msa0112300:three_prime_UTR | 45.0% | |
| !! | TGATGAAAGGAGGTTGATGC+AGG | + | chr1_3:26853591-26853610 | None:intergenic | 45.0% |
| GGAAGCAACTTACAGAATCG+TGG | + | chr1_3:26853879-26853898 | None:intergenic | 45.0% | |
| TAGTGATTCCGAACGACAGA+AGG | - | chr1_3:26854032-26854051 | Msa0112300:CDS | 45.0% | |
| !! | TTGTGTTGGTTCTTTCCAGC+CGG | + | chr1_3:26854155-26854174 | None:intergenic | 45.0% |
| TACTAGAGGCAGAGAAAGGA+AGG | - | chr1_3:26854393-26854412 | Msa0112300:intron | 45.0% | |
| TTCATACGGTAGATGGCCAT+TGG | + | chr1_3:26854800-26854819 | None:intergenic | 45.0% | |
| CATTAAACGGTCGGAACCAT+GGG | - | chr1_3:26855049-26855068 | Msa0112300:intron | 45.0% | |
| ATTAAACGGTCGGAACCATG+GGG | - | chr1_3:26855050-26855069 | Msa0112300:intron | 45.0% | |
| TGGATGGGAAAACATTCACC+TGG | + | chr1_3:26855792-26855811 | None:intergenic | 45.0% | |
| TTTCCCATCCACATCTTTCG+CGG | - | chr1_3:26855801-26855820 | Msa0112300:intron | 45.0% | |
| !!! | GTCGAGAGTTTTGGAGAATC+GGG | - | chr1_3:26856158-26856177 | Msa0112300:intron | 45.0% |
| TTTAGCTGACCTGGTATCTG+GGG | + | chr1_3:26856316-26856335 | None:intergenic | 45.0% | |
| GTCAGCTAAATACCCTACCA+AGG | - | chr1_3:26856326-26856345 | Msa0112300:intron | 45.0% | |
| !! | ATAGAGGGAGCACCATTAGA+AGG | + | chr1_3:26856403-26856422 | None:intergenic | 45.0% |
| TTCTAATGGTGCTCCCTCTA+TGG | - | chr1_3:26856402-26856421 | Msa0112300:intron | 45.0% | |
| ! | ATGGCTGATGATGCCATAGA+GGG | + | chr1_3:26856418-26856437 | None:intergenic | 45.0% |
| CATGTATCAAGCCAATCCAC+CGG | - | chr1_3:26856435-26856454 | Msa0112300:intron | 45.0% | |
| TTACCATACCCTCCAGATGA+TGG | + | chr1_3:26856463-26856482 | None:intergenic | 45.0% | |
| !! | AGGTGCTTGAGCATTGGAAT+TGG | + | chr1_3:26856494-26856513 | None:intergenic | 45.0% |
| ! | CTATTTTCCATCCGTAGCTC+AGG | - | chr1_3:26856600-26856619 | Msa0112300:intron | 45.0% |
| ! | TTTTCTTCCTGAGCTACGGA+TGG | + | chr1_3:26856610-26856629 | None:intergenic | 45.0% |
| ! | CCTGTTTTCTTCCTGAGCTA+CGG | + | chr1_3:26856614-26856633 | None:intergenic | 45.0% |
| ATGCGTCTATGCCCAAACTG+TGG | + | chr1_3:26853562-26853581 | None:intergenic | 50.0% | |
| CACTTAGGCCTTCTGTCGTT+CGG | + | chr1_3:26854043-26854062 | None:intergenic | 50.0% | |
| ! | CTTGTATCGGACAGAGTGTC+CGG | - | chr1_3:26854133-26854152 | Msa0112300:CDS | 50.0% |
| CAGAGATGAGGTTGTTGCGT+GGG | - | chr1_3:26854192-26854211 | Msa0112300:CDS | 50.0% | |
| ACTACATGGGGTCGACTACA+TGG | + | chr1_3:26854513-26854532 | None:intergenic | 50.0% | |
| ATGTAGTCGACCCCATGTAG+TGG | - | chr1_3:26854512-26854531 | Msa0112300:intron | 50.0% | |
| CGACCCCATGTAGTGGTATA+AGG | - | chr1_3:26854519-26854538 | Msa0112300:intron | 50.0% | |
| ATAACCATGTAGGTGGGACC+GGG | + | chr1_3:26854574-26854593 | None:intergenic | 50.0% | |
| GATAACCATGTAGGTGGGAC+CGG | + | chr1_3:26854575-26854594 | None:intergenic | 50.0% | |
| CCATGGTTCCGACCGTTTAA+TGG | + | chr1_3:26855051-26855070 | None:intergenic | 50.0% | |
| CCATTAAACGGTCGGAACCA+TGG | - | chr1_3:26855048-26855067 | Msa0112300:intron | 50.0% | |
| AGAGAGTGACTAGGAGGGAA+GGG | - | chr1_3:26855084-26855103 | Msa0112300:CDS | 50.0% | |
| ! | GGGGGGGATTATGGTGTTTT+GGG | - | chr1_3:26855109-26855128 | Msa0112300:intron | 50.0% |
| GCACAGCATTTCCCTACCAT+TGG | + | chr1_3:26855165-26855184 | None:intergenic | 50.0% | |
| AGAACATCTTGGGCAAGCTG+CGG | - | chr1_3:26855608-26855627 | Msa0112300:intron | 50.0% | |
| !!! | GCTTTTCAGCAGGTTGGTGT+GGG | - | chr1_3:26855630-26855649 | Msa0112300:intron | 50.0% |
| GGCAATACAGGAGGAAGGTT+TGG | + | chr1_3:26855681-26855700 | None:intergenic | 50.0% | |
| TCCAGGAATGGGAAATCTCG+GGG | + | chr1_3:26855706-26855725 | None:intergenic | 50.0% | |
| CTCCAGGAATGGGAAATCTC+GGG | + | chr1_3:26855707-26855726 | None:intergenic | 50.0% | |
| CCTCCAGGAATGGGAAATCT+CGG | + | chr1_3:26855708-26855727 | None:intergenic | 50.0% | |
| AGAGGTCTGAATCCTGGCAT+TGG | + | chr1_3:26855738-26855757 | None:intergenic | 50.0% | |
| CTCGACCTTTACCTGTTCCT+GGG | - | chr1_3:26855763-26855782 | Msa0112300:intron | 50.0% | |
| TCGACCTTTACCTGTTCCTG+GGG | - | chr1_3:26855764-26855783 | Msa0112300:intron | 50.0% | |
| AAGCCGCGAAAGATGTGGAT+GGG | + | chr1_3:26855807-26855826 | None:intergenic | 50.0% | |
| AAAGCCGCGAAAGATGTGGA+TGG | + | chr1_3:26855808-26855827 | None:intergenic | 50.0% | |
| ! | TTGTGGCATGGTGTTAGGTG+CGG | + | chr1_3:26856272-26856291 | None:intergenic | 50.0% |
| !! | TGGAGGCATCATTTGTGGCA+TGG | + | chr1_3:26856284-26856303 | None:intergenic | 50.0% |
| TTAGCTGACCTGGTATCTGG+GGG | + | chr1_3:26856315-26856334 | None:intergenic | 50.0% | |
| ! | GGTAGGGTATTTAGCTGACC+TGG | + | chr1_3:26856325-26856344 | None:intergenic | 50.0% |
| ! | GAATGAAGGTGGCCTTGGTA+GGG | + | chr1_3:26856341-26856360 | None:intergenic | 50.0% |
| TGCTTCCAGGAACTGTTGGT+GGG | + | chr1_3:26856369-26856388 | None:intergenic | 50.0% | |
| ACCACAGCACCACCTTCTAA+TGG | - | chr1_3:26856388-26856407 | Msa0112300:intron | 50.0% | |
| ! | ACCATTAGAAGGTGGTGCTG+TGG | + | chr1_3:26856392-26856411 | None:intergenic | 50.0% |
| ! | CATGGCTGATGATGCCATAG+AGG | + | chr1_3:26856419-26856438 | None:intergenic | 50.0% |
| !! | CGGTGGATTGGCTTGATACA+TGG | + | chr1_3:26856437-26856456 | None:intergenic | 50.0% |
| ! | CCAGGTCATTGATTGCTCTC+AGG | + | chr1_3:26856514-26856533 | None:intergenic | 50.0% |
| CCTGAGAGCAATCAATGACC+TGG | - | chr1_3:26856511-26856530 | Msa0112300:intron | 50.0% | |
| CCGTAGCTCAGGAAGAAAAC+AGG | - | chr1_3:26856611-26856630 | Msa0112300:intron | 50.0% | |
| ACAGGCTATTTGCAGGGACT+CGG | - | chr1_3:26856629-26856648 | Msa0112300:intron | 50.0% | |
| GCACTCAAACAGCCATGCCT+CGG | - | chr1_3:26853730-26853749 | Msa0112300:three_prime_UTR | 55.0% | |
| ! | TGAGTTGCAGTACCGAGGCA+TGG | + | chr1_3:26853745-26853764 | None:intergenic | 55.0% |
| AGGAGTGAGTTGCAGTACCG+AGG | + | chr1_3:26853750-26853769 | None:intergenic | 55.0% | |
| GCAGAGATGAGGTTGTTGCG+TGG | - | chr1_3:26854191-26854210 | Msa0112300:CDS | 55.0% | |
| AGGTTGTTGCGTGGGATGTG+TGG | - | chr1_3:26854200-26854219 | Msa0112300:CDS | 55.0% | |
| TTGCGTGGGATGTGTGGCAA+GGG | - | chr1_3:26854206-26854225 | Msa0112300:CDS | 55.0% | |
| TGGGGTCGACTACATGGATC+AGG | + | chr1_3:26854507-26854526 | None:intergenic | 55.0% | |
| TAGTCACTCTCTCCCCACCA+TGG | + | chr1_3:26855076-26855095 | None:intergenic | 55.0% | |
| ! | ATGGTGGGGAGAGAGTGACT+AGG | - | chr1_3:26855075-26855094 | Msa0112300:intron | 55.0% |
| TGGGGAGAGAGTGACTAGGA+GGG | - | chr1_3:26855079-26855098 | Msa0112300:intron | 55.0% | |
| GAGAGAGTGACTAGGAGGGA+AGG | - | chr1_3:26855083-26855102 | Msa0112300:CDS | 55.0% | |
| GAGAGTGACTAGGAGGGAAG+GGG | - | chr1_3:26855085-26855104 | Msa0112300:CDS | 55.0% | |
| AGAGTGACTAGGAGGGAAGG+GGG | - | chr1_3:26855086-26855105 | Msa0112300:CDS | 55.0% | |
| ! | GGGGGGGGATTATGGTGTTT+TGG | - | chr1_3:26855108-26855127 | Msa0112300:intron | 55.0% |
| TGGTAGGGAAATGCTGTGCG+TGG | - | chr1_3:26855166-26855185 | Msa0112300:intron | 55.0% | |
| !!! | GGCTTTTCAGCAGGTTGGTG+TGG | - | chr1_3:26855629-26855648 | Msa0112300:intron | 55.0% |
| AATCTCGGGGGTGGCAATAC+AGG | + | chr1_3:26855693-26855712 | None:intergenic | 55.0% | |
| CCAGGAATGGGAAATCTCGG+GGG | + | chr1_3:26855705-26855724 | None:intergenic | 55.0% | |
| CCGAGATTTCCCATTCCTGG+AGG | - | chr1_3:26855705-26855724 | Msa0112300:intron | 55.0% | |
| GGTGGTTGACCTCCAGGAAT+GGG | + | chr1_3:26855717-26855736 | None:intergenic | 55.0% | |
| TGGTGGTTGACCTCCAGGAA+TGG | + | chr1_3:26855718-26855737 | None:intergenic | 55.0% | |
| ! | GGTCTGAATCCTGGCATTGG+TGG | + | chr1_3:26855735-26855754 | None:intergenic | 55.0% |
| GGCATGAGAGGTCTGAATCC+TGG | + | chr1_3:26855744-26855763 | None:intergenic | 55.0% | |
| GGTAAAGGTCGAGGCATGAG+AGG | + | chr1_3:26855756-26855775 | None:intergenic | 55.0% | |
| CCAGGAACAGGTAAAGGTCG+AGG | + | chr1_3:26855765-26855784 | None:intergenic | 55.0% | |
| CCTCGACCTTTACCTGTTCC+TGG | - | chr1_3:26855762-26855781 | Msa0112300:intron | 55.0% | |
| AAACATTCACCTGGTGCCCC+AGG | + | chr1_3:26855783-26855802 | None:intergenic | 55.0% | |
| !! | CCAGGTGGAGGCATCATTTG+TGG | + | chr1_3:26856289-26856308 | None:intergenic | 55.0% |
| CCACAAATGATGCCTCCACC+TGG | - | chr1_3:26856286-26856305 | Msa0112300:intron | 55.0% | |
| TAGCTGACCTGGTATCTGGG+GGG | + | chr1_3:26856314-26856333 | None:intergenic | 55.0% | |
| ! | CGAATGAAGGTGGCCTTGGT+AGG | + | chr1_3:26856342-26856361 | None:intergenic | 55.0% |
| ! | CTTCCAGGAACTGTTGGTGG+GGG | + | chr1_3:26856367-26856386 | None:intergenic | 55.0% |
| GCTTCCAGGAACTGTTGGTG+GGG | + | chr1_3:26856368-26856387 | None:intergenic | 55.0% | |
| GTGCTTCCAGGAACTGTTGG+TGG | + | chr1_3:26856370-26856389 | None:intergenic | 55.0% | |
| GTGGTGCTTCCAGGAACTGT+TGG | + | chr1_3:26856373-26856392 | None:intergenic | 55.0% | |
| !! | GAGGGAGCACCATTAGAAGG+TGG | + | chr1_3:26856400-26856419 | None:intergenic | 55.0% |
| !! | AGATGATGGTGCCGGTGGAT+TGG | + | chr1_3:26856449-26856468 | None:intergenic | 55.0% |
| AATCCACCGGCACCATCATC+TGG | - | chr1_3:26856448-26856467 | Msa0112300:intron | 55.0% | |
| ! | TACCCTCCAGATGATGGTGC+CGG | + | chr1_3:26856457-26856476 | None:intergenic | 55.0% |
| GCACCATCATCTGGAGGGTA+TGG | - | chr1_3:26856457-26856476 | Msa0112300:intron | 55.0% | |
| GCTCTCAGGTGCTTGAGCAT+TGG | + | chr1_3:26856500-26856519 | None:intergenic | 55.0% | |
| ! | TATCGGACAGAGTGTCCGGC+TGG | - | chr1_3:26854137-26854156 | Msa0112300:CDS | 60.0% |
| GTTGCGTGGGATGTGTGGCA+AGG | - | chr1_3:26854205-26854224 | Msa0112300:CDS | 60.0% | |
| GTGGGGAGAGAGTGACTAGG+AGG | - | chr1_3:26855078-26855097 | Msa0112300:intron | 60.0% | |
| GAGTGACTAGGAGGGAAGGG+GGG | - | chr1_3:26855087-26855106 | Msa0112300:CDS | 60.0% | |
| AGTGACTAGGAGGGAAGGGG+GGG | - | chr1_3:26855088-26855107 | Msa0112300:CDS | 60.0% | |
| ! | GCAAGCTGCGGCTTTTCAGC+AGG | - | chr1_3:26855620-26855639 | Msa0112300:intron | 60.0% |
| ! | GCTGCGGCTTTTCAGCAGGT+TGG | - | chr1_3:26855624-26855643 | Msa0112300:intron | 60.0% |
| GGGGTGGCAATACAGGAGGA+AGG | + | chr1_3:26855686-26855705 | None:intergenic | 60.0% | |
| GGAATGGGAAATCTCGGGGG+TGG | + | chr1_3:26855702-26855721 | None:intergenic | 60.0% | |
| CCCCCGAGATTTCCCATTCC+TGG | - | chr1_3:26855702-26855721 | Msa0112300:intron | 60.0% | |
| !! | GGCATTGGTGGTTGACCTCC+AGG | + | chr1_3:26855723-26855742 | None:intergenic | 60.0% |
| GGAGGTCAACCACCAATGCC+AGG | - | chr1_3:26855723-26855742 | Msa0112300:intron | 60.0% | |
| GGTGCCCCAGGAACAGGTAA+AGG | + | chr1_3:26855771-26855790 | None:intergenic | 60.0% | |
| ! | TTACCTGTTCCTGGGGCACC+AGG | - | chr1_3:26855771-26855790 | Msa0112300:intron | 60.0% |
| ! | GGCATGGTGTTAGGTGCGGA+AGG | + | chr1_3:26856268-26856287 | None:intergenic | 60.0% |
| GGAGCGAATGAAGGTGGCCT+TGG | + | chr1_3:26856346-26856365 | None:intergenic | 60.0% | |
| ! | GTTGGTGGGGGAGCGAATGA+AGG | + | chr1_3:26856355-26856374 | None:intergenic | 60.0% |
| CACCGGCACCATCATCTGGA+GGG | - | chr1_3:26856452-26856471 | Msa0112300:intron | 60.0% | |
| TAGGTGGGACCGGGTGTGGA+AGG | + | chr1_3:26854565-26854584 | None:intergenic | 65.0% | |
| CATGTAGGTGGGACCGGGTG+TGG | + | chr1_3:26854569-26854588 | None:intergenic | 65.0% | |
| CACACCCGGTCCCACCTACA+TGG | - | chr1_3:26854567-26854586 | Msa0112300:intron | 65.0% | |
| TCGGAACCATGGGGCCATGG+TGG | - | chr1_3:26855059-26855078 | Msa0112300:intron | 65.0% | |
| CGGAACCATGGGGCCATGGT+GGG | - | chr1_3:26855060-26855079 | Msa0112300:intron | 65.0% | |
| GGAACCATGGGGCCATGGTG+GGG | - | chr1_3:26855061-26855080 | Msa0112300:intron | 65.0% | |
| GTGACTAGGAGGGAAGGGGG+GGG | - | chr1_3:26855089-26855108 | Msa0112300:CDS | 65.0% | |
| TGACTAGGAGGGAAGGGGGG+GGG | - | chr1_3:26855090-26855109 | Msa0112300:CDS | 65.0% | |
| CTCGGGGGTGGCAATACAGG+AGG | + | chr1_3:26855690-26855709 | None:intergenic | 65.0% | |
| TCACCTGGTGCCCCAGGAAC+AGG | + | chr1_3:26855777-26855796 | None:intergenic | 65.0% | |
| GGTGGGGGAGCGAATGAAGG+TGG | + | chr1_3:26856352-26856371 | None:intergenic | 65.0% | |
| GCTCCCCCACCAACAGTTCC+TGG | - | chr1_3:26856361-26856380 | Msa0112300:intron | 65.0% | |
| !! | GGTGGTGCTGTGGTGCTTCC+AGG | + | chr1_3:26856382-26856401 | None:intergenic | 65.0% |
| ! | CCTCCAGATGATGGTGCCGG+TGG | + | chr1_3:26856454-26856473 | None:intergenic | 65.0% |
| CCACCGGCACCATCATCTGG+AGG | - | chr1_3:26856451-26856470 | Msa0112300:intron | 65.0% | |
| CGGTCGGAACCATGGGGCCA+TGG | - | chr1_3:26855056-26855075 | Msa0112300:intron | 70.0% | |
| CTCTCCCCACCATGGCCCCA+TGG | + | chr1_3:26855068-26855087 | None:intergenic | 70.0% | |
| GACTAGGAGGGAAGGGGGGG+GGG | - | chr1_3:26855091-26855110 | Msa0112300:CDS | 70.0% | |
| ACTAGGAGGGAAGGGGGGGG+GGG | - | chr1_3:26855092-26855111 | Msa0112300:CDS | 70.0% | |
| GGAAGGGGGGGGGGGGATTA+TGG | - | chr1_3:26855100-26855119 | Msa0112300:CDS | 70.0% | |
| !! | ATCTGGGGGGCACCAGGTGG+AGG | + | chr1_3:26856301-26856320 | None:intergenic | 70.0% |
| !! | GGTATCTGGGGGGCACCAGG+TGG | + | chr1_3:26856304-26856323 | None:intergenic | 70.0% |
| !! | CCTGGTATCTGGGGGGCACC+AGG | + | chr1_3:26856307-26856326 | None:intergenic | 70.0% |
| CCTGGTGCCCCCCAGATACC+AGG | - | chr1_3:26856304-26856323 | Msa0112300:intron | 70.0% | |
| CTAGGAGGGAAGGGGGGGGG+GGG | - | chr1_3:26855093-26855112 | Msa0112300:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 26853547 | 26856979 | 26853547 | ID=Msa0112300;Name=Msa0112300 |
| chr1_3 | mRNA | 26853547 | 26856979 | 26853547 | ID=Msa0112300-mRNA-1;Parent=Msa0112300;Name=Msa0112300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=197|1|1|1|1|1|5|451|205 |
| chr1_3 | exon | 26853547 | 26854266 | 26853547 | ID=Msa0112300-mRNA-1:exon:9044;Parent=Msa0112300-mRNA-1 |
| chr1_3 | exon | 26854734 | 26854989 | 26854734 | ID=Msa0112300-mRNA-1:exon:9043;Parent=Msa0112300-mRNA-1 |
| chr1_3 | exon | 26855082 | 26855123 | 26855082 | ID=Msa0112300-mRNA-1:exon:9042;Parent=Msa0112300-mRNA-1 |
| chr1_3 | exon | 26856641 | 26856683 | 26856641 | ID=Msa0112300-mRNA-1:exon:9041;Parent=Msa0112300-mRNA-1 |
| chr1_3 | exon | 26856775 | 26856979 | 26856775 | ID=Msa0112300-mRNA-1:exon:9040;Parent=Msa0112300-mRNA-1 |
| chr1_3 | five_prime_UTR | 26856783 | 26856979 | 26856783 | ID=Msa0112300-mRNA-1:five_prime_utr;Parent=Msa0112300-mRNA-1 |
| chr1_3 | CDS | 26856775 | 26856782 | 26856775 | ID=Msa0112300-mRNA-1:cds;Parent=Msa0112300-mRNA-1 |
| chr1_3 | CDS | 26856641 | 26856683 | 26856641 | ID=Msa0112300-mRNA-1:cds;Parent=Msa0112300-mRNA-1 |
| chr1_3 | CDS | 26855082 | 26855123 | 26855082 | ID=Msa0112300-mRNA-1:cds;Parent=Msa0112300-mRNA-1 |
| chr1_3 | CDS | 26854734 | 26854989 | 26854734 | ID=Msa0112300-mRNA-1:cds;Parent=Msa0112300-mRNA-1 |
| chr1_3 | CDS | 26853998 | 26854266 | 26853998 | ID=Msa0112300-mRNA-1:cds;Parent=Msa0112300-mRNA-1 |
| chr1_3 | three_prime_UTR | 26853547 | 26853997 | 26853547 | ID=Msa0112300-mRNA-1:three_prime_utr;Parent=Msa0112300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
