Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050860 | XP_024631173.1 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050860 | sp|Q5ZLK1|DCA13_CHICK | 45.618 | 445 | 201 | 2 | 1 | 404 | 1 | 445 | 2.03e-146 | 426 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050860 | G7I5C2 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003360 | Msa0050860 | 0.931070 | 6.497232e-94 | -8.615850e-47 |
Msa0040220 | Msa0050860 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
Msa0042480 | Msa0050860 | 0.841000 | 6.195222e-58 | -8.615850e-47 |
Msa0050860 | Msa0079590 | 0.853747 | 1.947949e-61 | -8.615850e-47 |
Msa0050860 | Msa0113920 | 0.806478 | 8.067030e-50 | -8.615850e-47 |
Msa0050860 | Msa0146580 | 0.932206 | 1.205638e-94 | -8.615850e-47 |
Msa0050860 | Msa0426090 | 0.843069 | 1.757386e-58 | -8.615850e-47 |
Msa0050860 | Msa0426250 | 0.813258 | 2.803853e-51 | -8.615850e-47 |
Msa0050860 | Msa0472480 | 0.846025 | 2.813933e-59 | -8.615850e-47 |
Msa0050860 | Msa0475810 | 0.829389 | 5.290827e-55 | -8.615850e-47 |
Msa0050860 | Msa0717380 | 0.807622 | 4.620561e-50 | -8.615850e-47 |
Msa0050860 | Msa0799830 | 0.818638 | 1.765600e-52 | -8.615850e-47 |
Msa0050860 | Msa1041680 | 0.827438 | 1.564423e-54 | -8.615850e-47 |
Msa0050860 | Msa1083370 | 0.805455 | 1.323673e-49 | -8.615850e-47 |
Msa0050860 | Msa1166570 | 0.830560 | 2.741341e-55 | -8.615850e-47 |
Msa0050860 | Msa1206240 | 0.812200 | 4.778717e-51 | -8.615850e-47 |
Msa0050860 | Msa1227080 | 0.938032 | 1.312680e-98 | -8.615850e-47 |
Msa0050860 | Msa1450560 | 0.803908 | 2.785321e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050860 | MtrunA17_Chr1g0155601 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
Msa0050860 | MtrunA17_Chr1g0185501 | 24.206 | 252 | 147 | 9 | 95 | 311 | 26 | 268 | 7.16e-13 | 68.9 |
Msa0050860 | MtrunA17_Chr4g0067151 | 22.553 | 235 | 146 | 6 | 91 | 315 | 73 | 281 | 3.78e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0050860 | AT4G28450.1 | 71.460 | 452 | 81 | 2 | 1 | 404 | 1 | 452 | 0.0 | 680 |
Msa0050860 | AT4G02730.1 | 24.221 | 289 | 168 | 11 | 56 | 319 | 31 | 293 | 2.74e-15 | 77.0 |
Msa0050860 | AT2G22040.1 | 25.940 | 266 | 148 | 10 | 73 | 318 | 58 | 294 | 3.44e-11 | 64.3 |
Msa0050860 | AT3G49660.1 | 20.332 | 241 | 156 | 7 | 89 | 319 | 64 | 278 | 4.37e-11 | 63.9 |
Msa0050860 | AT3G49660.1 | 24.454 | 229 | 151 | 6 | 95 | 319 | 23 | 233 | 4.53e-11 | 63.9 |
Find 132 sgRNAs with CRISPR-Local
Find 435 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTACCACTGTAAAATTTA+TGG | 0.088636 | 1_2:+4891982 | None:intergenic |
GAAATTGAAAAGAAAGATTT+AGG | 0.137973 | 1_2:-4890397 | Msa0050860:three_prime_UTR |
TAGTTATGATTCCAGGAAAT+TGG | 0.212222 | 1_2:-4891813 | Msa0050860:CDS |
GTGCCTGTAGCGTTTCTTTA+TGG | 0.227292 | 1_2:+4890896 | None:intergenic |
CGGTGGTGCACACAGGGGTT+AGG | 0.235953 | 1_2:+4896614 | None:intergenic |
CTGCTGTGACCACCATTATA+AGG | 0.244087 | 1_2:+4891504 | None:intergenic |
CTTACCACTGTAAAATTTAT+GGG | 0.253800 | 1_2:+4891983 | None:intergenic |
TGTGCCAATGCAAGAAATTT+TGG | 0.255111 | 1_2:-4890525 | Msa0050860:three_prime_UTR |
ATAACTGGGCTTGCTCTCTA+TGG | 0.278986 | 1_2:+4896712 | None:intergenic |
TCCAAGTTGTTCTGATGCTT+TGG | 0.306051 | 1_2:+4891195 | None:intergenic |
GGGCTTGCTCTCTATGGTTT+AGG | 0.307858 | 1_2:+4896718 | None:intergenic |
CCATCCATTGCTCCTATAAA+AGG | 0.319195 | 1_2:+4895890 | None:intergenic |
GATGGAAGTTATGTAATTTC+AGG | 0.319874 | 1_2:-4891250 | Msa0050860:CDS |
TTTGGCTTCACCCAATTTCC+TGG | 0.320487 | 1_2:+4891802 | None:intergenic |
CCAAGCTATAGAATTGGTTT+TGG | 0.322631 | 1_2:+4892018 | None:intergenic |
TGTTTGCAGATATTCGTCTT+TGG | 0.331813 | 1_2:-4894041 | Msa0050860:intron |
CCCCATACGAAACTATTTAC+TGG | 0.333180 | 1_2:+4892982 | None:intergenic |
GCTGAGCTTGCTAAGAGATT+TGG | 0.339438 | 1_2:+4892919 | None:intergenic |
GTTTGCAGATATTCGTCTTT+GGG | 0.344881 | 1_2:-4894040 | Msa0050860:intron |
TTCTCTTGAGGACGAAGAAT+TGG | 0.350486 | 1_2:+4896089 | None:intergenic |
GGCTTTGTTGTAACACTCCC+TGG | 0.358324 | 1_2:+4890744 | None:intergenic |
GTGATCTTTATGAACACATT+TGG | 0.359886 | 1_2:+4891784 | None:intergenic |
GTGGCGCTCAAGTAGATATA+TGG | 0.375359 | 1_2:-4893121 | Msa0050860:CDS |
AGAACGAAGCCAAGACCTTC+AGG | 0.381853 | 1_2:-4896251 | Msa0050860:intron |
CGCACAGCACCTTGGTGTCC+AGG | 0.391819 | 1_2:+4893642 | None:intergenic |
AAATTGAAAAGAAAGATTTA+GGG | 0.397767 | 1_2:-4890396 | Msa0050860:three_prime_UTR |
TACACCAAAATTTCTTGCAT+TGG | 0.399910 | 1_2:+4890521 | None:intergenic |
AAAGAAGAAGCCTTGTATAT+TGG | 0.402396 | 1_2:+4890828 | None:intergenic |
GCATAAATCTGTATGATTTA+CGG | 0.406292 | 1_2:-4892326 | Msa0050860:CDS |
TGGATTCCAAGCTATAGAAT+TGG | 0.408247 | 1_2:+4892012 | None:intergenic |
GTAAAATTTATGGGTTCCAT+TGG | 0.408971 | 1_2:+4891992 | None:intergenic |
GCTAAGAGATTTGGTTCTCC+TGG | 0.410192 | 1_2:+4892928 | None:intergenic |
CAGGGGTTAGGGTTCGGAAT+TGG | 0.410437 | 1_2:+4896626 | None:intergenic |
ACTGCTATAGTTATGATTCC+AGG | 0.417229 | 1_2:-4891820 | Msa0050860:CDS |
ATGATACTAACCTCAGACTT+TGG | 0.421940 | 1_2:-4891222 | Msa0050860:CDS |
GAAGAATTGGATCGTAATTA+CGG | 0.423302 | 1_2:+4896102 | None:intergenic |
GGATTGGCGGTGGTGCACAC+AGG | 0.426225 | 1_2:+4896607 | None:intergenic |
AGTTATGATTCCAGGAAATT+GGG | 0.427023 | 1_2:-4891812 | Msa0050860:CDS |
AATGAATTACCTGAAGGTCT+TGG | 0.427414 | 1_2:+4896242 | None:intergenic |
GGTGGTGCACACAGGGGTTA+GGG | 0.430634 | 1_2:+4896615 | None:intergenic |
AGGAAAGCTCACAGTGCCCC+AGG | 0.436680 | 1_2:-4890762 | Msa0050860:CDS |
GGCCATCTGTCGATGCTGTC+AGG | 0.439615 | 1_2:+4893616 | None:intergenic |
GGCGGTGAGCTGTGGTGGAT+TGG | 0.439996 | 1_2:+4896591 | None:intergenic |
TGCACACAGGGGTTAGGGTT+CGG | 0.441760 | 1_2:+4896620 | None:intergenic |
GTGAGAATCTTCCCTTATAA+TGG | 0.443627 | 1_2:-4891516 | Msa0050860:CDS |
TGCTGTGACCACCATTATAA+GGG | 0.445472 | 1_2:+4891505 | None:intergenic |
TCCTCCGTTCGCCGTTGTAA+AGG | 0.448837 | 1_2:-4896555 | Msa0050860:intron |
TGTTACAACAAAGCCGTTGC+GGG | 0.449730 | 1_2:-4890736 | Msa0050860:CDS |
GAAGCCTTGTATATTGGTCT+TGG | 0.453460 | 1_2:+4890834 | None:intergenic |
AAATCTTCAATTCAATCAAA+AGG | 0.456369 | 1_2:-4890419 | Msa0050860:three_prime_UTR |
TGTTGAAGGTGAACTGAACT+AGG | 0.456544 | 1_2:+4896685 | None:intergenic |
TAGATATATGGAATCACAAC+AGG | 0.461587 | 1_2:-4893109 | Msa0050860:intron |
GATTGGCGGTGGTGCACACA+GGG | 0.462317 | 1_2:+4896608 | None:intergenic |
TGTAGATGCAATTTCGTGTA+TGG | 0.462793 | 1_2:-4895864 | Msa0050860:CDS |
CCAAAACCAATTCTATAGCT+TGG | 0.466953 | 1_2:-4892018 | Msa0050860:CDS |
CTTGCAATACGGTTAACTTC+AGG | 0.470144 | 1_2:+4890870 | None:intergenic |
TGCTCTCAATGCAGTGAAGT+TGG | 0.475144 | 1_2:-4896048 | Msa0050860:CDS |
GATATTGACTACTCACCAAC+TGG | 0.479569 | 1_2:-4891661 | Msa0050860:CDS |
ATTTCTGTCCGCTTTAATCC+AGG | 0.483582 | 1_2:-4892946 | Msa0050860:CDS |
TGTGTCAAGTTCAGCGGCGA+TGG | 0.483997 | 1_2:-4891268 | Msa0050860:CDS |
AACTGTTCTATCATAAGATC+CGG | 0.487930 | 1_2:+4891624 | None:intergenic |
AGCCAGTAAATAGTTTCGTA+TGG | 0.495618 | 1_2:-4892984 | Msa0050860:CDS |
ATAATTCTTCTTTCCCGCAA+CGG | 0.501061 | 1_2:+4890723 | None:intergenic |
CAATGCAGTGAAGTTGGATA+AGG | 0.505068 | 1_2:-4896042 | Msa0050860:intron |
TGAGCGGCGGTGAGCTGTGG+TGG | 0.509257 | 1_2:+4896586 | None:intergenic |
CAAAGTTATATCACGCTCTA+CGG | 0.510796 | 1_2:-4896287 | Msa0050860:CDS |
GCTTTGTTGTAACACTCCCT+GGG | 0.513233 | 1_2:+4890745 | None:intergenic |
GGCCGCATTCTTGTTTCATG+TGG | 0.514047 | 1_2:-4893597 | Msa0050860:CDS |
TTAGGGTTCGGAATTGGCAG+AGG | 0.514464 | 1_2:+4896632 | None:intergenic |
GCCAGTAAATAGTTTCGTAT+GGG | 0.521326 | 1_2:-4892983 | Msa0050860:CDS |
GGTGAGCTGTGGTGGATTGG+CGG | 0.521355 | 1_2:+4896594 | None:intergenic |
TAGCGCTGTTGATCACCAAT+GGG | 0.521520 | 1_2:-4893165 | Msa0050860:CDS |
AGTAAGGAAAATGATAATGA+TGG | 0.524836 | 1_2:-4892292 | Msa0050860:intron |
CGGACTGTTTGTCAGTTCCC+TGG | 0.530233 | 1_2:-4893660 | Msa0050860:CDS |
TCAGGCCTCGCACAGCACCT+TGG | 0.533050 | 1_2:+4893634 | None:intergenic |
CAAAATGCTCGCCGTCCCAT+TGG | 0.535842 | 1_2:+4893150 | None:intergenic |
CAATATATATATTTATGAAG+TGG | 0.537187 | 1_2:-4890652 | Msa0050860:three_prime_UTR |
ATTATCAGAGAAGTTGAGTG+AGG | 0.539555 | 1_2:-4890705 | Msa0050860:exon |
TTCTATAGCTTGGAATCCAA+TGG | 0.540411 | 1_2:-4892008 | Msa0050860:CDS |
AGTGTCTATGCCTTGCAATA+CGG | 0.542864 | 1_2:+4890859 | None:intergenic |
GGTTCGGAATTGGCAGAGGA+TGG | 0.545542 | 1_2:+4896636 | None:intergenic |
TATTCCACCGCCTTCTCTTG+AGG | 0.547207 | 1_2:+4896077 | None:intergenic |
TTAGCGCTGTTGATCACCAA+TGG | 0.548979 | 1_2:-4893166 | Msa0050860:intron |
GGCCTGACAGCATCGACAGA+TGG | 0.550525 | 1_2:-4893618 | Msa0050860:CDS |
TTTCGTATGGGGATCAGATA+CGG | 0.552827 | 1_2:-4892971 | Msa0050860:CDS |
ACATCGCATAACATCGGCTC+CGG | 0.555583 | 1_2:-4896665 | Msa0050860:five_prime_UTR |
GGCATGCAGGCAAATGAAGA+TGG | 0.559590 | 1_2:-4891845 | Msa0050860:intron |
CTTTGGCCTTCCAAAGTCTG+AGG | 0.561645 | 1_2:+4891212 | None:intergenic |
GCCAAAGCATCAGAACAACT+TGG | 0.571500 | 1_2:-4891196 | Msa0050860:CDS |
TACGGATGGATACCCCAGTA+AGG | 0.575067 | 1_2:-4892308 | Msa0050860:CDS |
TGGCAGAGGATGGTGCTAGC+CGG | 0.578600 | 1_2:+4896646 | None:intergenic |
GTGTTACAACAAAGCCGTTG+CGG | 0.579532 | 1_2:-4890737 | Msa0050860:CDS |
GAGCTGTGGTGGATTGGCGG+TGG | 0.580519 | 1_2:+4896597 | None:intergenic |
CAATGAGCGGCGGTGAGCTG+TGG | 0.581863 | 1_2:+4896583 | None:intergenic |
GCACAGCACCTTGGTGTCCA+GGG | 0.584408 | 1_2:+4893643 | None:intergenic |
GGACACCAAGGTGCTGTGCG+AGG | 0.590155 | 1_2:-4893639 | Msa0050860:CDS |
TACTAACCTCAGACTTTGGA+AGG | 0.594251 | 1_2:-4891218 | Msa0050860:CDS |
AGGCCATAAAGAAACGCTAC+AGG | 0.594578 | 1_2:-4890899 | Msa0050860:CDS |
CTTACCAAGACCAATATACA+AGG | 0.596333 | 1_2:-4890838 | Msa0050860:CDS |
TGTCAGTTCCCTGGACACCA+AGG | 0.601209 | 1_2:-4893651 | Msa0050860:CDS |
CACACCTTTACAACGGCGAA+CGG | 0.605066 | 1_2:+4896551 | None:intergenic |
GGAAAGCTCACAGTGCCCCA+GGG | 0.606954 | 1_2:-4890761 | Msa0050860:CDS |
AATTCTTCGTCCTCAAGAGA+AGG | 0.607045 | 1_2:-4896087 | Msa0050860:CDS |
CTGAAGTTAACCGTATTGCA+AGG | 0.608965 | 1_2:-4890869 | Msa0050860:CDS |
ATCTCTTAGCAAGCTCAGCT+AGG | 0.612178 | 1_2:-4892915 | Msa0050860:intron |
ATCATACTAAAAGAATGCAA+AGG | 0.613308 | 1_2:-4891473 | Msa0050860:intron |
TCGTCCTCAAGAGAAGGCGG+TGG | 0.613718 | 1_2:-4896081 | Msa0050860:CDS |
GTGACAAATTCTCGACCAGT+TGG | 0.617530 | 1_2:+4891646 | None:intergenic |
CCGATGTTATGCGATGTTGA+AGG | 0.618493 | 1_2:+4896671 | None:intergenic |
TTGGTTCTCCTGGATTAAAG+CGG | 0.621177 | 1_2:+4892938 | None:intergenic |
GTCTTTGGGATATAGCTGCT+AGG | 0.627694 | 1_2:-4894026 | Msa0050860:intron |
TGATGCCACAGGTTCTTCCG+AGG | 0.628636 | 1_2:-4890947 | Msa0050860:intron |
AGAATCTTCCCTTATAATGG+TGG | 0.629250 | 1_2:-4891513 | Msa0050860:CDS |
ACCTTTACAACGGCGAACGG+AGG | 0.630519 | 1_2:+4896554 | None:intergenic |
AAATCTGTATGATTTACGGA+TGG | 0.631713 | 1_2:-4892322 | Msa0050860:CDS |
ATCTACTTGAGCGCCACCTG+TGG | 0.634797 | 1_2:+4893127 | None:intergenic |
GATGCCACAGGTTCTTCCGA+GGG | 0.636446 | 1_2:-4890946 | Msa0050860:intron |
ATATATGCACACCTTTACAA+CGG | 0.636759 | 1_2:+4896544 | None:intergenic |
CCAGTAAATAGTTTCGTATG+GGG | 0.638122 | 1_2:-4892982 | Msa0050860:CDS |
GTATTCTGTGTCAAGTTCAG+CGG | 0.646929 | 1_2:-4891274 | Msa0050860:CDS |
ACTGGTCGAGAATTTGTCAC+CGG | 0.649767 | 1_2:-4891643 | Msa0050860:CDS |
AGTTATATCACGCTCTACGG+AGG | 0.657642 | 1_2:-4896284 | Msa0050860:CDS |
GCTGTTGATCACCAATGGGA+CGG | 0.667148 | 1_2:-4893161 | Msa0050860:CDS |
CCTTCAACATCGCATAACAT+CGG | 0.670795 | 1_2:-4896671 | Msa0050860:five_prime_UTR |
ATTGGCGGTGGTGCACACAG+GGG | 0.672431 | 1_2:+4896609 | None:intergenic |
CAATACGGTTAACTTCAGGA+AGG | 0.681036 | 1_2:+4890874 | None:intergenic |
TCTTCGTCCTCAAGAGAAGG+CGG | 0.682148 | 1_2:-4896084 | Msa0050860:CDS |
TTCCACATGAAACAAGAATG+CGG | 0.692579 | 1_2:+4893595 | None:intergenic |
ACGGAGGAAGTAGCAATGAG+CGG | 0.696929 | 1_2:+4896570 | None:intergenic |
CTTTGTTGTAACACTCCCTG+GGG | 0.701621 | 1_2:+4890746 | None:intergenic |
GAGGAAGTAGCAATGAGCGG+CGG | 0.735597 | 1_2:+4896573 | None:intergenic |
GAAGAAGCATGACTATCACG+AGG | 0.736007 | 1_2:-4890919 | Msa0050860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGTTTTTTTTTTTTTTTTG+TGG | - | chr1_2:4891136-4891155 | Msa0050860:intron | 10.0% |
!! | AAATAAATAAGAAATTAGAA+TGG | - | chr1_2:4891676-4891695 | Msa0050860:intron | 10.0% |
!!! | TAATTATGATATATTTTAAC+TGG | - | chr1_2:4892125-4892144 | Msa0050860:intron | 10.0% |
!!! | AATTATGATATATTTTAACT+GGG | - | chr1_2:4892126-4892145 | Msa0050860:intron | 10.0% |
!!! | TTTTTTGTAAAATTTTCTTT+TGG | - | chr1_2:4893707-4893726 | Msa0050860:intron | 10.0% |
!! | TAATCAAAAGAAAAATAATA+AGG | + | chr1_2:4894888-4894907 | None:intergenic | 10.0% |
!!! | TTTATTTATCATTTTGTGAT+AGG | + | chr1_2:4890643-4890662 | None:intergenic | 15.0% |
!!! | TATTGTGAATATGATTTTAT+AGG | - | chr1_2:4891074-4891093 | Msa0050860:intron | 15.0% |
!!! | ATATGTATAAACTATTTCTA+TGG | - | chr1_2:4891332-4891351 | Msa0050860:intron | 15.0% |
!!! | TTTTAAATCAATCTATCAAA+TGG | + | chr1_2:4891646-4891665 | None:intergenic | 15.0% |
!!! | GATTGATTTAAAATGATATT+TGG | - | chr1_2:4891653-4891672 | Msa0050860:CDS | 15.0% |
!!! | ACAATTTTCAAAATATAAGT+TGG | - | chr1_2:4892013-4892032 | Msa0050860:CDS | 15.0% |
!!! | ACAAGATTATTTTAGTTTAA+AGG | - | chr1_2:4892086-4892105 | Msa0050860:intron | 15.0% |
!! | AATTTACCAAAATTAAAGTT+TGG | + | chr1_2:4892264-4892283 | None:intergenic | 15.0% |
!! | GTTAATATAGTAGTTTAAAA+CGG | + | chr1_2:4892992-4893011 | None:intergenic | 15.0% |
!!! | CATTTAAAATTGAAAGAAAA+AGG | + | chr1_2:4893076-4893095 | None:intergenic | 15.0% |
!!! | TAATATTGTCATTTTGTTTA+TGG | - | chr1_2:4893376-4893395 | Msa0050860:intron | 15.0% |
!! | GATTATATAATTAACACTAA+GGG | - | chr1_2:4894220-4894239 | Msa0050860:intron | 15.0% |
!! | ATTATATAATTAACACTAAG+GGG | - | chr1_2:4894221-4894240 | Msa0050860:intron | 15.0% |
!!! | GGTTTTTATTTAGTTAAATA+TGG | - | chr1_2:4894561-4894580 | Msa0050860:intron | 15.0% |
!!! | GAACTGATTTATATTTATTT+TGG | - | chr1_2:4894632-4894651 | Msa0050860:intron | 15.0% |
!!! | ATTATCATTAGTTTAAATCA+TGG | - | chr1_2:4894814-4894833 | Msa0050860:intron | 15.0% |
!! | TTGTAATTATTATTAAACTG+AGG | - | chr1_2:4894861-4894880 | Msa0050860:intron | 15.0% |
!! | TAAGAATATTTCAATAAACT+CGG | + | chr1_2:4895732-4895751 | None:intergenic | 15.0% |
!! | CAATATATATATTTATGAAG+TGG | - | chr1_2:4896415-4896434 | Msa0050860:intron | 15.0% |
!! | AAATTGAAAAGAAAGATTTA+GGG | - | chr1_2:4896671-4896690 | Msa0050860:five_prime_UTR | 15.0% |
!! | TTCACAATAAAAAACACATA+GGG | + | chr1_2:4891063-4891082 | None:intergenic | 20.0% |
!! | ATTCACAATAAAAAACACAT+AGG | + | chr1_2:4891064-4891083 | None:intergenic | 20.0% |
!!! | TGAATATGATTTTATAGGAT+AGG | - | chr1_2:4891079-4891098 | Msa0050860:intron | 20.0% |
!! | AAAAATTTAGAAGAGAAGAT+AGG | - | chr1_2:4891607-4891626 | Msa0050860:intron | 20.0% |
!! | AAAATTTAGAAGAGAAGATA+GGG | - | chr1_2:4891608-4891627 | Msa0050860:intron | 20.0% |
!! | ATAAGAAATTAGAATGGTTA+TGG | - | chr1_2:4891682-4891701 | Msa0050860:intron | 20.0% |
!!! | TTCTAGTTAACATTTCTTTA+AGG | - | chr1_2:4892293-4892312 | Msa0050860:CDS | 20.0% |
!! | TCTAGTTAACATTTCTTTAA+GGG | - | chr1_2:4892294-4892313 | Msa0050860:CDS | 20.0% |
!!! | ATCTAAACAATTTTGTTTAC+AGG | + | chr1_2:4892369-4892388 | None:intergenic | 20.0% |
!!! | TTTGAAGATTCTTTAGTTTT+GGG | + | chr1_2:4892537-4892556 | None:intergenic | 20.0% |
!!! | ATTTGAAGATTCTTTAGTTT+TGG | + | chr1_2:4892538-4892557 | None:intergenic | 20.0% |
!! | TAAAGAATCTTCAAATTACA+GGG | - | chr1_2:4892542-4892561 | Msa0050860:intron | 20.0% |
!! | CCAGTAAAAAAAAATTGTTT+CGG | + | chr1_2:4892574-4892593 | None:intergenic | 20.0% |
!!! | CGAAACAATTTTTTTTTACT+GGG | - | chr1_2:4892572-4892591 | Msa0050860:intron | 20.0% |
!!! | GAAACAATTTTTTTTTACTG+GGG | - | chr1_2:4892573-4892592 | Msa0050860:intron | 20.0% |
!!! | AAACAATTTTTTTTTACTGG+GGG | - | chr1_2:4892574-4892593 | Msa0050860:intron | 20.0% |
!!! | TTTAACCTCTAAATGTTTTA+TGG | + | chr1_2:4892817-4892836 | None:intergenic | 20.0% |
!!! | TTAGCAATTTTAAATGTTCT+GGG | - | chr1_2:4893147-4893166 | Msa0050860:CDS | 20.0% |
!!! | ACTTTTATCATATAAGAAAC+AGG | + | chr1_2:4893209-4893228 | None:intergenic | 20.0% |
!!! | AATACATCAAACTTTTGTTA+TGG | - | chr1_2:4893236-4893255 | Msa0050860:intron | 20.0% |
!! | GTTATGGATAAGAAAAATAT+TGG | - | chr1_2:4893252-4893271 | Msa0050860:intron | 20.0% |
!! | ATAAGAAAAATATTGGTGAA+TGG | - | chr1_2:4893259-4893278 | Msa0050860:intron | 20.0% |
!! | AGCTTATTTAATTAGACTTT+AGG | - | chr1_2:4893291-4893310 | Msa0050860:intron | 20.0% |
!!! | TTTTGTTTATGGAAAAAAGA+CGG | - | chr1_2:4893387-4893406 | Msa0050860:intron | 20.0% |
!!! | TTTTTATGCTTACAAAACAT+TGG | - | chr1_2:4893860-4893879 | Msa0050860:intron | 20.0% |
!! | TGCTAAAAATAGAATAAACA+CGG | - | chr1_2:4894197-4894216 | Msa0050860:intron | 20.0% |
!! | GGATTATATAATTAACACTA+AGG | - | chr1_2:4894219-4894238 | Msa0050860:intron | 20.0% |
!! | ATGTTAATCATCTTACTTAT+AGG | - | chr1_2:4894590-4894609 | Msa0050860:intron | 20.0% |
!! | AGGAAGGAATTTATTTAATA+AGG | - | chr1_2:4894610-4894629 | Msa0050860:intron | 20.0% |
!!! | TTTATTTTGGTTAGTAACAT+TGG | - | chr1_2:4894645-4894664 | Msa0050860:intron | 20.0% |
!! | ACTCACGAATATAATATATT+TGG | + | chr1_2:4894995-4895014 | None:intergenic | 20.0% |
!! | TAGTGATATTTAAATTCTTG+TGG | - | chr1_2:4895187-4895206 | Msa0050860:intron | 20.0% |
!! | ATTAACAATTTCTCATTTGT+AGG | - | chr1_2:4895529-4895548 | Msa0050860:intron | 20.0% |
!! | AATATTCTTATCATGCTTTA+TGG | - | chr1_2:4895742-4895761 | Msa0050860:intron | 20.0% |
!!! | TTGTTATTCAATTAGTTAGT+TGG | - | chr1_2:4896023-4896042 | Msa0050860:intron | 20.0% |
!! | AAATCTTCAATTCAATCAAA+AGG | - | chr1_2:4896648-4896667 | Msa0050860:five_prime_UTR | 20.0% |
!! | GAAATTGAAAAGAAAGATTT+AGG | - | chr1_2:4896670-4896689 | Msa0050860:five_prime_UTR | 20.0% |
!! | AAACAAAAACTATTTCAAAC+AGG | + | chr1_2:4896697-4896716 | None:intergenic | 20.0% |
!! | GAATAGATTTTACATAAGCA+AGG | + | chr1_2:4890621-4890640 | None:intergenic | 25.0% |
! | AGTGAAATATTCTCTCTTTA+TGG | - | chr1_2:4890733-4890752 | Msa0050860:CDS | 25.0% |
! | TGAAGAGGTTTAACAATAAA+GGG | + | chr1_2:4890870-4890889 | None:intergenic | 25.0% |
! | ATGAAGAGGTTTAACAATAA+AGG | + | chr1_2:4890871-4890890 | None:intergenic | 25.0% |
! | ATGAATTAAGAAGAATGAAG+AGG | + | chr1_2:4890885-4890904 | None:intergenic | 25.0% |
! | ACACGCTAAAAAAAACAAAA+GGG | + | chr1_2:4890942-4890961 | None:intergenic | 25.0% |
!! | ATTTTTGCTAGACCTTTTAT+AGG | - | chr1_2:4891165-4891184 | Msa0050860:intron | 25.0% |
! | ATATCTCTTTCAATTGACTA+GGG | + | chr1_2:4891236-4891255 | None:intergenic | 25.0% |
! | AATATCTCTTTCAATTGACT+AGG | + | chr1_2:4891237-4891256 | None:intergenic | 25.0% |
! | ATTAAATCGTTCATCCAAAA+AGG | + | chr1_2:4891305-4891324 | None:intergenic | 25.0% |
! | ATTGAAGCAACATGATTAAA+GGG | + | chr1_2:4891533-4891552 | None:intergenic | 25.0% |
! | AATTGAAGCAACATGATTAA+AGG | + | chr1_2:4891534-4891553 | None:intergenic | 25.0% |
! | TATTGTTGTACACTTGATAT+AGG | - | chr1_2:4891579-4891598 | Msa0050860:intron | 25.0% |
! | TGAACTCCTGAAATTAAAAT+CGG | + | chr1_2:4892043-4892062 | None:intergenic | 25.0% |
! | TAAAATAATCTTGTTCTTCC+TGG | + | chr1_2:4892080-4892099 | None:intergenic | 25.0% |
!! | TCACTCAAGAAAAAGAATTT+TGG | + | chr1_2:4892166-4892185 | None:intergenic | 25.0% |
! | ATCAGTTAACTATTAGATAG+AGG | - | chr1_2:4892206-4892225 | Msa0050860:intron | 25.0% |
!!! | AAACAGCCAAACTTTAATTT+TGG | - | chr1_2:4892255-4892274 | Msa0050860:intron | 25.0% |
!!! | AAACAATTTTGTTTACAGGA+GGG | + | chr1_2:4892365-4892384 | None:intergenic | 25.0% |
!!! | TAAACAATTTTGTTTACAGG+AGG | + | chr1_2:4892366-4892385 | None:intergenic | 25.0% |
!!! | TTTTGAAATTTGACGTCATA+AGG | + | chr1_2:4892428-4892447 | None:intergenic | 25.0% |
! | ACGTCAAATTTCAAAATTGA+AGG | - | chr1_2:4892432-4892451 | Msa0050860:intron | 25.0% |
! | AAAATCGATGATATGATAGA+GGG | + | chr1_2:4892492-4892511 | None:intergenic | 25.0% |
! | CTAAAGAATCTTCAAATTAC+AGG | - | chr1_2:4892541-4892560 | Msa0050860:intron | 25.0% |
!!! | CCGAAACAATTTTTTTTTAC+TGG | - | chr1_2:4892571-4892590 | Msa0050860:intron | 25.0% |
! | ATGCTACAAAGTTAAAGAAA+GGG | + | chr1_2:4892645-4892664 | None:intergenic | 25.0% |
! | AATGCTACAAAGTTAAAGAA+AGG | + | chr1_2:4892646-4892665 | None:intergenic | 25.0% |
! | TTTCATGCTTATTATGAAAG+TGG | - | chr1_2:4892731-4892750 | Msa0050860:intron | 25.0% |
! | GACAGTTGTTTAAACTATAA+TGG | - | chr1_2:4892753-4892772 | Msa0050860:intron | 25.0% |
! | AACAACCATAAAACATTTAG+AGG | - | chr1_2:4892809-4892828 | Msa0050860:intron | 25.0% |
!! | CTTAGCAATTTTAAATGTTC+TGG | - | chr1_2:4893146-4893165 | Msa0050860:CDS | 25.0% |
! | TAATTAAATAAGCTGATGCA+TGG | + | chr1_2:4893285-4893304 | None:intergenic | 25.0% |
! | AGTAAAAGAAAAACGAAAAG+AGG | + | chr1_2:4893519-4893538 | None:intergenic | 25.0% |
! | GCTAAAAATAGAATAAACAC+GGG | - | chr1_2:4894198-4894217 | Msa0050860:intron | 25.0% |
! | TAATCATCTTACTTATAGGA+AGG | - | chr1_2:4894594-4894613 | Msa0050860:intron | 25.0% |
!!! | TTTTTTGTTTTTTCAGTGAC+AGG | - | chr1_2:4894717-4894736 | Msa0050860:intron | 25.0% |
! | GCATAAATCTGTATGATTTA+CGG | - | chr1_2:4894741-4894760 | Msa0050860:intron | 25.0% |
!! | TCATTATCATTTTCCTTACT+GGG | + | chr1_2:4894775-4894794 | None:intergenic | 25.0% |
!! | ATCATTATCATTTTCCTTAC+TGG | + | chr1_2:4894776-4894795 | None:intergenic | 25.0% |
!! | AGTAAGGAAAATGATAATGA+TGG | - | chr1_2:4894775-4894794 | Msa0050860:intron | 25.0% |
!!! | CTTTTGATTATACATATCCT+TGG | - | chr1_2:4894898-4894917 | Msa0050860:intron | 25.0% |
!! | TTTTTCTGCTTCATATCTTT+TGG | - | chr1_2:4894961-4894980 | Msa0050860:intron | 25.0% |
! | CTTACCACTGTAAAATTTAT+GGG | + | chr1_2:4895087-4895106 | None:intergenic | 25.0% |
! | ACTTACCACTGTAAAATTTA+TGG | + | chr1_2:4895088-4895107 | None:intergenic | 25.0% |
!! | TTCTTGTGGACAAATTTTAT+TGG | - | chr1_2:4895201-4895220 | Msa0050860:intron | 25.0% |
! | AGTAAGAAGATAAAATGACA+AGG | + | chr1_2:4895492-4895511 | None:intergenic | 25.0% |
! | ATCATACTAAAAGAATGCAA+AGG | - | chr1_2:4895594-4895613 | Msa0050860:intron | 25.0% |
!! | AATCTTTATCTTTTGTACAC+AGG | - | chr1_2:4895770-4895789 | Msa0050860:intron | 25.0% |
!! | ATCTTTATCTTTTGTACACA+GGG | - | chr1_2:4895771-4895790 | Msa0050860:intron | 25.0% |
! | AAACTGTCATCTATTAATTG+TGG | - | chr1_2:4895958-4895977 | Msa0050860:intron | 25.0% |
!! | AGTTTATATACTGTTTTCTC+AGG | - | chr1_2:4896442-4896461 | Msa0050860:intron | 25.0% |
!! | GAAATCAATAGCTAATTTTG+TGG | - | chr1_2:4896494-4896513 | Msa0050860:intron | 25.0% |
!! | CTGAACTAGGTTTTATAACT+GGG | + | chr1_2:4890372-4890391 | None:intergenic | 30.0% |
!! | ACTGAACTAGGTTTTATAAC+TGG | + | chr1_2:4890373-4890392 | None:intergenic | 30.0% |
ATATATGCACACCTTTACAA+CGG | + | chr1_2:4890526-4890545 | None:intergenic | 30.0% | |
ATTGACACTTCTACTGAATT+TGG | - | chr1_2:4890699-4890718 | Msa0050860:exon | 30.0% | |
GACACGCTAAAAAAAACAAA+AGG | + | chr1_2:4890943-4890962 | None:intergenic | 30.0% | |
GAAGAATTGGATCGTAATTA+CGG | + | chr1_2:4890968-4890987 | None:intergenic | 30.0% | |
CAATTGAAAGAGATATTCTC+TGG | - | chr1_2:4891240-4891259 | Msa0050860:CDS | 30.0% | |
! | TACTTCAATTTTCCTTACTC+AGG | - | chr1_2:4891278-4891297 | Msa0050860:CDS | 30.0% |
!! | GTTTATAAGCACTTTTGAGA+CGG | + | chr1_2:4891494-4891513 | None:intergenic | 30.0% |
TCAATTTCATGCTTAGCTAA+TGG | - | chr1_2:4891548-4891567 | Msa0050860:intron | 30.0% | |
TTGTACACTTGATATAGGAT+TGG | - | chr1_2:4891584-4891603 | Msa0050860:intron | 30.0% | |
AATGGTTATGGTTATGCTAA+TGG | - | chr1_2:4891694-4891713 | Msa0050860:intron | 30.0% | |
ATGGTTATGGTTATGCTAAT+GGG | - | chr1_2:4891695-4891714 | Msa0050860:intron | 30.0% | |
GAACTCCTGAAATTAAAATC+GGG | + | chr1_2:4892042-4892061 | None:intergenic | 30.0% | |
!! | AACAATTTTGTTTACAGGAG+GGG | + | chr1_2:4892364-4892383 | None:intergenic | 30.0% |
CAAAGAATCTTCAAACTACA+GGG | + | chr1_2:4892397-4892416 | None:intergenic | 30.0% | |
!! | GTTTGAAGATTCTTTGGTTT+TGG | - | chr1_2:4892401-4892420 | Msa0050860:intron | 30.0% |
CAAAATCGATGATATGATAG+AGG | + | chr1_2:4892493-4892512 | None:intergenic | 30.0% | |
TGTACAGTCAAAATTCATGA+AGG | - | chr1_2:4892511-4892530 | Msa0050860:intron | 30.0% | |
TGTAGCATTACACATGTAAT+TGG | - | chr1_2:4892657-4892676 | Msa0050860:intron | 30.0% | |
CTTTGCATAATTCTCATAGA+TGG | - | chr1_2:4892780-4892799 | Msa0050860:intron | 30.0% | |
! | TATATTTGCTTTCTGAAGAG+TGG | - | chr1_2:4893171-4893190 | Msa0050860:intron | 30.0% |
AATTAGACTTTAGGCAATGA+TGG | - | chr1_2:4893300-4893319 | Msa0050860:intron | 30.0% | |
!! | TTTTCATGTTGGTTACAACT+TGG | - | chr1_2:4893332-4893351 | Msa0050860:intron | 30.0% |
! | TTTCATGTTGGTTACAACTT+GGG | - | chr1_2:4893333-4893352 | Msa0050860:intron | 30.0% |
AAAGAAAAACGAAAAGAGGT+TGG | + | chr1_2:4893515-4893534 | None:intergenic | 30.0% | |
CTCAATTAAGACAACTATTG+AGG | - | chr1_2:4893661-4893680 | Msa0050860:CDS | 30.0% | |
AATTAAGACAACTATTGAGG+TGG | - | chr1_2:4893664-4893683 | Msa0050860:CDS | 30.0% | |
! | ATGTTTGGAAGAATGCATTT+TGG | - | chr1_2:4893779-4893798 | Msa0050860:intron | 30.0% |
!! | AATGCATTTTGGTAAGTCAT+AGG | - | chr1_2:4893790-4893809 | Msa0050860:intron | 30.0% |
!! | ATGCATTTTGGTAAGTCATA+GGG | - | chr1_2:4893791-4893810 | Msa0050860:intron | 30.0% |
! | ATAGGGCTGTTATTTATTTC+AGG | - | chr1_2:4893808-4893827 | Msa0050860:intron | 30.0% |
TAGATATATGGAATCACAAC+AGG | - | chr1_2:4893958-4893977 | Msa0050860:intron | 30.0% | |
TAAGAGTCTACAAAAGTAGT+CGG | + | chr1_2:4894026-4894045 | None:intergenic | 30.0% | |
ATATAACCTCCTTGTAGAAA+TGG | - | chr1_2:4894292-4894311 | Msa0050860:intron | 30.0% | |
TTAGATGTACCATTTCTACA+AGG | + | chr1_2:4894304-4894323 | None:intergenic | 30.0% | |
ACTAGGGAAAATAACTGAAA+GGG | + | chr1_2:4894425-4894444 | None:intergenic | 30.0% | |
ATTAAGGTCAATGTTCTCAA+TGG | + | chr1_2:4894529-4894548 | None:intergenic | 30.0% | |
AACCAAGACTAACTAGATTA+AGG | + | chr1_2:4894545-4894564 | None:intergenic | 30.0% | |
AAATCTGTATGATTTACGGA+TGG | - | chr1_2:4894745-4894764 | Msa0050860:intron | 30.0% | |
! | CATTATCATTTTCCTTACTG+GGG | + | chr1_2:4894774-4894793 | None:intergenic | 30.0% |
GTAAAATTTATGGGTTCCAT+TGG | + | chr1_2:4895078-4895097 | None:intergenic | 30.0% | |
TAGTTATGATTCCAGGAAAT+TGG | - | chr1_2:4895254-4895273 | Msa0050860:intron | 30.0% | |
AGTTATGATTCCAGGAAATT+GGG | - | chr1_2:4895255-4895274 | Msa0050860:intron | 30.0% | |
GTGATCTTTATGAACACATT+TGG | + | chr1_2:4895286-4895305 | None:intergenic | 30.0% | |
! | ATTTTCATGTTTCACTCTAC+AGG | - | chr1_2:4895380-4895399 | Msa0050860:intron | 30.0% |
AACTGTTCTATCATAAGATC+CGG | + | chr1_2:4895446-4895465 | None:intergenic | 30.0% | |
AAGGTTATAATGAAGTCCAA+GGG | + | chr1_2:4895473-4895492 | None:intergenic | 30.0% | |
! | AGAAATCTTTTAAACAGCTG+AGG | + | chr1_2:4895696-4895715 | None:intergenic | 30.0% |
GATGGAAGTTATGTAATTTC+AGG | - | chr1_2:4895817-4895836 | Msa0050860:intron | 30.0% | |
TTCAATTAGTTAGTTGGCTA+TGG | - | chr1_2:4896029-4896048 | Msa0050860:intron | 30.0% | |
CTCAGAAGAGAAATTATTAG+AGG | + | chr1_2:4896060-4896079 | None:intergenic | 30.0% | |
CTAATAATTTCTCTTCTGAG+AGG | - | chr1_2:4896060-4896079 | Msa0050860:CDS | 30.0% | |
! | AAAGAAGAAGCCTTGTATAT+TGG | + | chr1_2:4896242-4896261 | None:intergenic | 30.0% |
TACACCAAAATTTCTTGCAT+TGG | + | chr1_2:4896549-4896568 | None:intergenic | 30.0% | |
CAAAGTTATATCACGCTCTA+CGG | - | chr1_2:4890780-4890799 | Msa0050860:CDS | 35.0% | |
AATGAATTACCTGAAGGTCT+TGG | + | chr1_2:4890828-4890847 | None:intergenic | 35.0% | |
GCATTGAATGAATTACCTGA+AGG | + | chr1_2:4890834-4890853 | None:intergenic | 35.0% | |
! | TAGACCTTTTATAGGAGCAA+TGG | - | chr1_2:4891173-4891192 | Msa0050860:intron | 35.0% |
TGTAGATGCAATTTCGTGTA+TGG | - | chr1_2:4891203-4891222 | Msa0050860:CDS | 35.0% | |
! | AGAGATATTCTCTGGTTCAA+TGG | - | chr1_2:4891248-4891267 | Msa0050860:CDS | 35.0% |
! | ATATTCTCTGGTTCAATGGA+TGG | - | chr1_2:4891252-4891271 | Msa0050860:CDS | 35.0% |
! | CTTATTTCCACAAGCTTTTC+AGG | + | chr1_2:4891419-4891438 | None:intergenic | 35.0% |
CTGAAAAGCTTGTGGAAATA+AGG | - | chr1_2:4891417-4891436 | Msa0050860:intron | 35.0% | |
AGAAAGATTGGAAGAGTGAT+GGG | - | chr1_2:4891721-4891740 | Msa0050860:intron | 35.0% | |
ATGCTGTTGAAAGTTTGGTT+TGG | - | chr1_2:4891747-4891766 | Msa0050860:intron | 35.0% | |
AAAAACCACCAATGAAACAC+GGG | + | chr1_2:4891795-4891814 | None:intergenic | 35.0% | |
GAAAAACCACCAATGAAACA+CGG | + | chr1_2:4891796-4891815 | None:intergenic | 35.0% | |
ATTACAAATAGCCTAGCAGA+GGG | + | chr1_2:4891836-4891855 | None:intergenic | 35.0% | |
GCTAGGCTATTTGTAATCTT+TGG | - | chr1_2:4891839-4891858 | Msa0050860:CDS | 35.0% | |
TGTCTACAAGTTTCTTGACT+GGG | + | chr1_2:4891913-4891932 | None:intergenic | 35.0% | |
!!! | GGATACCCGATTTTAATTTC+AGG | - | chr1_2:4892034-4892053 | Msa0050860:intron | 35.0% |
TTCAGTAGATAGTAAGATCC+AGG | - | chr1_2:4892059-4892078 | Msa0050860:intron | 35.0% | |
CTAGAAATCGCTAATGTTAC+AGG | + | chr1_2:4892337-4892356 | None:intergenic | 35.0% | |
CCAAAGAATCTTCAAACTAC+AGG | + | chr1_2:4892398-4892417 | None:intergenic | 35.0% | |
CCTGTAGTTTGAAGATTCTT+TGG | - | chr1_2:4892395-4892414 | Msa0050860:intron | 35.0% | |
AAAATCCGCTCAAATTACAG+GGG | + | chr1_2:4892468-4892487 | None:intergenic | 35.0% | |
CAAAATCCGCTCAAATTACA+GGG | + | chr1_2:4892469-4892488 | None:intergenic | 35.0% | |
ACTGTAATATTAGCGGTTTC+TGG | + | chr1_2:4892604-4892623 | None:intergenic | 35.0% | |
AGAAACCGCTAATATTACAG+TGG | - | chr1_2:4892603-4892622 | Msa0050860:intron | 35.0% | |
GAAACCGCTAATATTACAGT+GGG | - | chr1_2:4892604-4892623 | Msa0050860:intron | 35.0% | |
AAACCGCTAATATTACAGTG+GGG | - | chr1_2:4892605-4892624 | Msa0050860:intron | 35.0% | |
TTACCCCACTGTAATATTAG+CGG | + | chr1_2:4892611-4892630 | None:intergenic | 35.0% | |
! | TTTTCCAACCTCCTTATAAG+TGG | - | chr1_2:4892687-4892706 | Msa0050860:intron | 35.0% |
TTTCCAACCTCCTTATAAGT+GGG | - | chr1_2:4892688-4892707 | Msa0050860:intron | 35.0% | |
TAATGGCACTAGTATAGAGA+GGG | + | chr1_2:4892943-4892962 | None:intergenic | 35.0% | |
! | CAAGTAAGGAAAAGGTGTAA+TGG | + | chr1_2:4892960-4892979 | None:intergenic | 35.0% |
TTGAGCATCAAGTAAGGAAA+AGG | + | chr1_2:4892968-4892987 | None:intergenic | 35.0% | |
TGTTTGCAGATATTCGTCTT+TGG | - | chr1_2:4893026-4893045 | Msa0050860:intron | 35.0% | |
GTTTGCAGATATTCGTCTTT+GGG | - | chr1_2:4893027-4893046 | Msa0050860:intron | 35.0% | |
! | TTCATGTTGGTTACAACTTG+GGG | - | chr1_2:4893334-4893353 | Msa0050860:intron | 35.0% |
TTCCACATGAAACAAGAATG+CGG | + | chr1_2:4893475-4893494 | None:intergenic | 35.0% | |
! | AACTTTTCTGATGTGTGAAC+TGG | - | chr1_2:4893576-4893595 | Msa0050860:intron | 35.0% |
TTATGTTCAGTGTCAGACTT+TGG | - | chr1_2:4893603-4893622 | Msa0050860:CDS | 35.0% | |
!! | AATGTTCCTGTTGCTTCTTT+TGG | - | chr1_2:4893626-4893645 | Msa0050860:CDS | 35.0% |
!! | ATGTTCCTGTTGCTTCTTTT+GGG | - | chr1_2:4893627-4893646 | Msa0050860:CDS | 35.0% |
!!! | TTTGAACTTTTTTCCCTAGC+CGG | - | chr1_2:4893747-4893766 | Msa0050860:intron | 35.0% |
TTCCAAACATAAACACTTGC+CGG | + | chr1_2:4893769-4893788 | None:intergenic | 35.0% | |
AGCCAGTAAATAGTTTCGTA+TGG | - | chr1_2:4894083-4894102 | Msa0050860:intron | 35.0% | |
GCCAGTAAATAGTTTCGTAT+GGG | - | chr1_2:4894084-4894103 | Msa0050860:intron | 35.0% | |
CCAGTAAATAGTTTCGTATG+GGG | - | chr1_2:4894085-4894104 | Msa0050860:intron | 35.0% | |
CTGCAATTACAATACAACAG+TGG | - | chr1_2:4894250-4894269 | Msa0050860:intron | 35.0% | |
CTAGGGAAAATAACTGAAAG+GGG | + | chr1_2:4894424-4894443 | None:intergenic | 35.0% | |
GACTAGGGAAAATAACTGAA+AGG | + | chr1_2:4894426-4894445 | None:intergenic | 35.0% | |
ATTGATGGGAGTTGAGTTAA+CGG | + | chr1_2:4894503-4894522 | None:intergenic | 35.0% | |
GTTCTCAATGGTGAATTGAT+GGG | + | chr1_2:4894517-4894536 | None:intergenic | 35.0% | |
TGTTCTCAATGGTGAATTGA+TGG | + | chr1_2:4894518-4894537 | None:intergenic | 35.0% | |
! | GACCTTAATCTAGTTAGTCT+TGG | - | chr1_2:4894540-4894559 | Msa0050860:intron | 35.0% |
!!! | CATGGCACATGTTTTGATTT+TGG | - | chr1_2:4894832-4894851 | Msa0050860:intron | 35.0% |
!! | CCAAGCTATAGAATTGGTTT+TGG | + | chr1_2:4895052-4895071 | None:intergenic | 35.0% |
CCAAAACCAATTCTATAGCT+TGG | - | chr1_2:4895049-4895068 | Msa0050860:intron | 35.0% | |
TGGATTCCAAGCTATAGAAT+TGG | + | chr1_2:4895058-4895077 | None:intergenic | 35.0% | |
TTCTATAGCTTGGAATCCAA+TGG | - | chr1_2:4895059-4895078 | Msa0050860:intron | 35.0% | |
! | GGAACCCATAAATTTTACAG+TGG | - | chr1_2:4895080-4895099 | Msa0050860:intron | 35.0% |
!! | AATAAAAGCATCAGAACCAC+TGG | + | chr1_2:4895128-4895147 | None:intergenic | 35.0% |
! | GACAAATTTTATTGGCATGC+AGG | - | chr1_2:4895209-4895228 | Msa0050860:intron | 35.0% |
ACTGCTATAGTTATGATTCC+AGG | - | chr1_2:4895247-4895266 | Msa0050860:intron | 35.0% | |
ACGTTTCTGCAGTGTAATTA+TGG | - | chr1_2:4895304-4895323 | Msa0050860:intron | 35.0% | |
CAAGGTTATAATGAAGTCCA+AGG | + | chr1_2:4895474-4895493 | None:intergenic | 35.0% | |
GTGAGAATCTTCCCTTATAA+TGG | - | chr1_2:4895551-4895570 | Msa0050860:intron | 35.0% | |
AGAATCTTCCCTTATAATGG+TGG | - | chr1_2:4895554-4895573 | Msa0050860:intron | 35.0% | |
ATGATACTAACCTCAGACTT+TGG | - | chr1_2:4895845-4895864 | Msa0050860:intron | 35.0% | |
ATCTCAGGGAATGAATTGAA+GGG | + | chr1_2:4896086-4896105 | None:intergenic | 35.0% | |
AATCTCAGGGAATGAATTGA+AGG | + | chr1_2:4896087-4896106 | None:intergenic | 35.0% | |
CTTACCAAGACCAATATACA+AGG | - | chr1_2:4896229-4896248 | Msa0050860:intron | 35.0% | |
AGCTGATGCTAAGAAAAAGA+AGG | - | chr1_2:4896274-4896293 | Msa0050860:CDS | 35.0% | |
CTAAGAAAAAGAAGGAAGAG+AGG | - | chr1_2:4896282-4896301 | Msa0050860:CDS | 35.0% | |
ATAATTCTTCTTTCCCGCAA+CGG | + | chr1_2:4896347-4896366 | None:intergenic | 35.0% | |
ATTATCAGAGAAGTTGAGTG+AGG | - | chr1_2:4896362-4896381 | Msa0050860:intron | 35.0% | |
!! | TTGCATTTTTCAGTATGCAC+TGG | + | chr1_2:4896398-4896417 | None:intergenic | 35.0% |
! | ATACTGTTTTCTCAGGCAAA+TGG | - | chr1_2:4896449-4896468 | Msa0050860:intron | 35.0% |
! | TTTTGTGGTGTTTTACTGCT+TGG | - | chr1_2:4896509-4896528 | Msa0050860:intron | 35.0% |
! | TGTGCCAATGCAAGAAATTT+TGG | - | chr1_2:4896542-4896561 | Msa0050860:intron | 35.0% |
TGTTGAAGGTGAACTGAACT+AGG | + | chr1_2:4890385-4890404 | None:intergenic | 40.0% | |
CCTTCAACATCGCATAACAT+CGG | - | chr1_2:4890396-4890415 | Msa0050860:three_prime_UTR | 40.0% | |
TTCTCTTGAGGACGAAGAAT+TGG | + | chr1_2:4890981-4891000 | None:intergenic | 40.0% | |
AATTCTTCGTCCTCAAGAGA+AGG | - | chr1_2:4890980-4890999 | Msa0050860:intron | 40.0% | |
CAATGCAGTGAAGTTGGATA+AGG | - | chr1_2:4891025-4891044 | Msa0050860:intron | 40.0% | |
CCATCCATTGCTCCTATAAA+AGG | + | chr1_2:4891180-4891199 | None:intergenic | 40.0% | |
! | CCTTTTATAGGAGCAATGGA+TGG | - | chr1_2:4891177-4891196 | Msa0050860:intron | 40.0% |
! | TTCCTTACTCAGGTCCTTTT+TGG | - | chr1_2:4891288-4891307 | Msa0050860:intron | 40.0% |
ATCCAAAAAGGACCTGAGTA+AGG | + | chr1_2:4891293-4891312 | None:intergenic | 40.0% | |
AAGCTATCCTGAAAAGCTTG+TGG | - | chr1_2:4891409-4891428 | Msa0050860:intron | 40.0% | |
!!! | AAGCACTTTTGAGACGGTTT+TGG | + | chr1_2:4891488-4891507 | None:intergenic | 40.0% |
!! | GCTAATGGGTTGAGAAAGAT+TGG | - | chr1_2:4891709-4891728 | Msa0050860:intron | 40.0% |
GAGAAAGATTGGAAGAGTGA+TGG | - | chr1_2:4891720-4891739 | Msa0050860:intron | 40.0% | |
! | GGTTGATGCTGTTGAAAGTT+TGG | - | chr1_2:4891742-4891761 | Msa0050860:intron | 40.0% |
!! | GGTTTTTCAACACGTCTACT+TGG | - | chr1_2:4891808-4891827 | Msa0050860:CDS | 40.0% |
TTACAAATAGCCTAGCAGAG+GGG | + | chr1_2:4891835-4891854 | None:intergenic | 40.0% | |
GATTACAAATAGCCTAGCAG+AGG | + | chr1_2:4891837-4891856 | None:intergenic | 40.0% | |
CTTGACTGGGAGTAAAATTG+TGG | + | chr1_2:4891900-4891919 | None:intergenic | 40.0% | |
CTGTCTACAAGTTTCTTGAC+TGG | + | chr1_2:4891914-4891933 | None:intergenic | 40.0% | |
GAAATCGCTAATGTTACAGG+AGG | + | chr1_2:4892334-4892353 | None:intergenic | 40.0% | |
GAATCTTCAAACTACAGGGT+TGG | + | chr1_2:4892393-4892412 | None:intergenic | 40.0% | |
GCAAAATCCGCTCAAATTAC+AGG | + | chr1_2:4892470-4892489 | None:intergenic | 40.0% | |
TTCCAACCTCCTTATAAGTG+GGG | - | chr1_2:4892689-4892708 | Msa0050860:intron | 40.0% | |
TGATTCTTGCCCCACTTATA+AGG | + | chr1_2:4892701-4892720 | None:intergenic | 40.0% | |
!! | ATTCTGGTGCTTGTTTTCAC+TGG | - | chr1_2:4892901-4892920 | Msa0050860:intron | 40.0% |
AATGGCACTAGTATAGAGAG+GGG | + | chr1_2:4892942-4892961 | None:intergenic | 40.0% | |
GTAATGGCACTAGTATAGAG+AGG | + | chr1_2:4892944-4892963 | None:intergenic | 40.0% | |
!! | AACGGATTGAGCATCAAGTA+AGG | + | chr1_2:4892974-4892993 | None:intergenic | 40.0% |
TCTGCAAACACAATAAACGC+AGG | + | chr1_2:4893016-4893035 | None:intergenic | 40.0% | |
AGACTTTAGGCAATGATGGT+AGG | - | chr1_2:4893304-4893323 | Msa0050860:intron | 40.0% | |
TTTAGGCAATGATGGTAGGA+AGG | - | chr1_2:4893308-4893327 | Msa0050860:intron | 40.0% | |
! | GGTAGGAAGGATTTTCATGT+TGG | - | chr1_2:4893321-4893340 | Msa0050860:intron | 40.0% |
! | TCATGTTGGTTACAACTTGG+GGG | - | chr1_2:4893335-4893354 | Msa0050860:intron | 40.0% |
!! | AAAAGAGGTTGGTACTTACG+TGG | + | chr1_2:4893504-4893523 | None:intergenic | 40.0% |
!! | TGTTCCTGTTGCTTCTTTTG+GGG | - | chr1_2:4893628-4893647 | Msa0050860:CDS | 40.0% |
! | ATTGAGGTGGAATTTTGTGC+TGG | - | chr1_2:4893677-4893696 | Msa0050860:intron | 40.0% |
CCCCATACGAAACTATTTAC+TGG | + | chr1_2:4894088-4894107 | None:intergenic | 40.0% | |
TTTCGTATGGGGATCAGATA+CGG | - | chr1_2:4894096-4894115 | Msa0050860:intron | 40.0% | |
ATTTCTGTCCGCTTTAATCC+AGG | - | chr1_2:4894121-4894140 | Msa0050860:intron | 40.0% | |
! | TTGGTTCTCCTGGATTAAAG+CGG | + | chr1_2:4894132-4894151 | None:intergenic | 40.0% |
CAGTGGCTGATTACAATGAA+TGG | - | chr1_2:4894267-4894286 | Msa0050860:intron | 40.0% | |
GATGTACCATTTCTACAAGG+AGG | + | chr1_2:4894301-4894320 | None:intergenic | 40.0% | |
TATCTGATCAGTTTGTCCAG+TGG | - | chr1_2:4895109-4895128 | Msa0050860:intron | 40.0% | |
TCATGTTTCACTCTACAGGA+TGG | - | chr1_2:4895384-4895403 | Msa0050860:intron | 40.0% | |
! | GATATTGACTACTCACCAAC+TGG | - | chr1_2:4895406-4895425 | Msa0050860:intron | 40.0% |
GATAGAACAGTTAGTTCCCT+TGG | - | chr1_2:4895454-4895473 | Msa0050860:intron | 40.0% | |
TGCTGTGACCACCATTATAA+GGG | + | chr1_2:4895565-4895584 | None:intergenic | 40.0% | |
GTATTCTGTGTCAAGTTCAG+CGG | - | chr1_2:4895793-4895812 | Msa0050860:intron | 40.0% | |
TACTAACCTCAGACTTTGGA+AGG | - | chr1_2:4895849-4895868 | Msa0050860:intron | 40.0% | |
TCCAAGTTGTTCTGATGCTT+TGG | + | chr1_2:4895875-4895894 | None:intergenic | 40.0% | |
TCGTAAACAGGTGAATCTCA+GGG | + | chr1_2:4896100-4896119 | None:intergenic | 40.0% | |
ATCGTAAACAGGTGAATCTC+AGG | + | chr1_2:4896101-4896120 | None:intergenic | 40.0% | |
! | TCATGCTTCTTCTTTTCCCT+CGG | + | chr1_2:4896140-4896159 | None:intergenic | 40.0% |
CAATACGGTTAACTTCAGGA+AGG | + | chr1_2:4896196-4896215 | None:intergenic | 40.0% | |
CTTGCAATACGGTTAACTTC+AGG | + | chr1_2:4896200-4896219 | None:intergenic | 40.0% | |
CTGAAGTTAACCGTATTGCA+AGG | - | chr1_2:4896198-4896217 | Msa0050860:intron | 40.0% | |
AGTGTCTATGCCTTGCAATA+CGG | + | chr1_2:4896211-4896230 | None:intergenic | 40.0% | |
! | GAAGCCTTGTATATTGGTCT+TGG | + | chr1_2:4896236-4896255 | None:intergenic | 40.0% |
AGAAAAAGAAGGAAGAGAGG+AGG | - | chr1_2:4896285-4896304 | Msa0050860:CDS | 40.0% | |
! | ATAACTGGGCTTGCTCTCTA+TGG | + | chr1_2:4890358-4890377 | None:intergenic | 45.0% |
CCGATGTTATGCGATGTTGA+AGG | + | chr1_2:4890399-4890418 | None:intergenic | 45.0% | |
AGTTATATCACGCTCTACGG+AGG | - | chr1_2:4890783-4890802 | Msa0050860:CDS | 45.0% | |
TGCTCTCAATGCAGTGAAGT+TGG | - | chr1_2:4891019-4891038 | Msa0050860:intron | 45.0% | |
! | TTCTCTGGTTCAATGGATGG+AGG | - | chr1_2:4891255-4891274 | Msa0050860:CDS | 45.0% |
AATGAAACACGGGTCTGGTT+CGG | + | chr1_2:4891785-4891804 | None:intergenic | 45.0% | |
! | GTGGTTGATGTATCGTCTCT+AGG | + | chr1_2:4891881-4891900 | None:intergenic | 45.0% |
TCACACCCCTGTAATTTGAG+CGG | - | chr1_2:4892460-4892479 | Msa0050860:intron | 45.0% | |
TTCTTGCCCCACTTATAAGG+AGG | + | chr1_2:4892698-4892717 | None:intergenic | 45.0% | |
GGGACAAAAAGGAGGAGTAA+TGG | + | chr1_2:4892864-4892883 | None:intergenic | 45.0% | |
AGAATGACACAGCCAGATGT+GGG | + | chr1_2:4892886-4892905 | None:intergenic | 45.0% | |
!! | GTCTTTGGGATATAGCTGCT+AGG | - | chr1_2:4893041-4893060 | Msa0050860:intron | 45.0% |
! | ACATAAACACTTGCCGGCTA+GGG | + | chr1_2:4893763-4893782 | None:intergenic | 45.0% |
! | AACATAAACACTTGCCGGCT+AGG | + | chr1_2:4893764-4893783 | None:intergenic | 45.0% |
AGCCGGCAAGTGTTTATGTT+TGG | - | chr1_2:4893764-4893783 | Msa0050860:intron | 45.0% | |
TTAGCGCTGTTGATCACCAA+TGG | - | chr1_2:4893901-4893920 | Msa0050860:intron | 45.0% | |
TAGCGCTGTTGATCACCAAT+GGG | - | chr1_2:4893902-4893921 | Msa0050860:intron | 45.0% | |
GTGGCGCTCAAGTAGATATA+TGG | - | chr1_2:4893946-4893965 | Msa0050860:intron | 45.0% | |
TGTTGTTACCTCCTTTCTGC+AGG | - | chr1_2:4894056-4894075 | Msa0050860:intron | 45.0% | |
!! | GCTAAGAGATTTGGTTCTCC+TGG | + | chr1_2:4894142-4894161 | None:intergenic | 45.0% |
!! | GCTGAGCTTGCTAAGAGATT+TGG | + | chr1_2:4894151-4894170 | None:intergenic | 45.0% |
ATCTCTTAGCAAGCTCAGCT+AGG | - | chr1_2:4894152-4894171 | Msa0050860:intron | 45.0% | |
ACACGGGTAAGGATTTGGAA+GGG | + | chr1_2:4894386-4894405 | None:intergenic | 45.0% | |
! | TACTATCTGAGACACGGGTA+AGG | + | chr1_2:4894397-4894416 | None:intergenic | 45.0% |
!! | GAGAGTACTATCTGAGACAC+GGG | + | chr1_2:4894402-4894421 | None:intergenic | 45.0% |
!! | GGAGAGTACTATCTGAGACA+CGG | + | chr1_2:4894403-4894422 | None:intergenic | 45.0% |
GGGAATCATGAGAGAGACTA+GGG | + | chr1_2:4894441-4894460 | None:intergenic | 45.0% | |
TGGGAATCATGAGAGAGACT+AGG | + | chr1_2:4894442-4894461 | None:intergenic | 45.0% | |
GAGTTAACGGAATTGCCAGA+TGG | + | chr1_2:4894490-4894509 | None:intergenic | 45.0% | |
TGCAGTTACGAAATGTGCCA+AGG | + | chr1_2:4894918-4894937 | None:intergenic | 45.0% | |
! | TTTGGCTTCACCCAATTTCC+TGG | + | chr1_2:4895268-4895287 | None:intergenic | 45.0% |
GTGACAAATTCTCGACCAGT+TGG | + | chr1_2:4895424-4895443 | None:intergenic | 45.0% | |
ACTGGTCGAGAATTTGTCAC+CGG | - | chr1_2:4895424-4895443 | Msa0050860:intron | 45.0% | |
CTGCTGTGACCACCATTATA+AGG | + | chr1_2:4895566-4895585 | None:intergenic | 45.0% | |
! | GCCAAAGCATCAGAACAACT+TGG | - | chr1_2:4895871-4895890 | Msa0050860:CDS | 45.0% |
TGTGTGTGTGTGGAGAAAGA+CGG | + | chr1_2:4895919-4895938 | None:intergenic | 45.0% | |
! | GAAGAAGCATGACTATCACG+AGG | - | chr1_2:4896148-4896167 | Msa0050860:intron | 45.0% |
AGGCCATAAAGAAACGCTAC+AGG | - | chr1_2:4896168-4896187 | Msa0050860:intron | 45.0% | |
GTGCCTGTAGCGTTTCTTTA+TGG | + | chr1_2:4896174-4896193 | None:intergenic | 45.0% | |
! | CTTTGTTGTAACACTCCCTG+GGG | + | chr1_2:4896324-4896343 | None:intergenic | 45.0% |
! | GCTTTGTTGTAACACTCCCT+GGG | + | chr1_2:4896325-4896344 | None:intergenic | 45.0% |
GTGTTACAACAAAGCCGTTG+CGG | - | chr1_2:4896330-4896349 | Msa0050860:intron | 45.0% | |
TGTTACAACAAAGCCGTTGC+GGG | - | chr1_2:4896331-4896350 | Msa0050860:intron | 45.0% | |
!! | ACATCGCATAACATCGGCTC+CGG | - | chr1_2:4890402-4890421 | Msa0050860:three_prime_UTR | 50.0% |
TTAGGGTTCGGAATTGGCAG+AGG | + | chr1_2:4890438-4890457 | None:intergenic | 50.0% | |
ACGGAGGAAGTAGCAATGAG+CGG | + | chr1_2:4890500-4890519 | None:intergenic | 50.0% | |
CACACCTTTACAACGGCGAA+CGG | + | chr1_2:4890519-4890538 | None:intergenic | 50.0% | |
AGAACGAAGCCAAGACCTTC+AGG | - | chr1_2:4890816-4890835 | Msa0050860:CDS | 50.0% | |
TCTTCGTCCTCAAGAGAAGG+CGG | - | chr1_2:4890983-4891002 | Msa0050860:intron | 50.0% | |
TATTCCACCGCCTTCTCTTG+AGG | + | chr1_2:4890993-4891012 | None:intergenic | 50.0% | |
GAACCAGACCCGTGTTTCAT+TGG | - | chr1_2:4891784-4891803 | Msa0050860:CDS | 50.0% | |
TGCCCCACTTATAAGGAGGT+TGG | + | chr1_2:4892694-4892713 | None:intergenic | 50.0% | |
AGATGTGGGGGACAAAAAGG+AGG | + | chr1_2:4892872-4892891 | None:intergenic | 50.0% | |
! | TCCTTTTTGTCCCCCACATC+TGG | - | chr1_2:4892871-4892890 | Msa0050860:intron | 50.0% |
AATGACACAGCCAGATGTGG+GGG | + | chr1_2:4892884-4892903 | None:intergenic | 50.0% | |
GAATGACACAGCCAGATGTG+GGG | + | chr1_2:4892885-4892904 | None:intergenic | 50.0% | |
CAGAATGACACAGCCAGATG+TGG | + | chr1_2:4892887-4892906 | None:intergenic | 50.0% | |
! | CACATCTGGCTGTGTCATTC+TGG | - | chr1_2:4892885-4892904 | Msa0050860:intron | 50.0% |
! | GGCCGCATTCTTGTTTCATG+TGG | - | chr1_2:4893470-4893489 | Msa0050860:intron | 50.0% |
GAGTCCCCAAAAGAAGCAAC+AGG | + | chr1_2:4893635-4893654 | None:intergenic | 50.0% | |
!! | GCTTCTTTTGGGGACTCAGA+TGG | - | chr1_2:4893638-4893657 | Msa0050860:CDS | 50.0% |
! | GAGGTGGAATTTTGTGCTGG+AGG | - | chr1_2:4893680-4893699 | Msa0050860:intron | 50.0% |
GCTGTTGATCACCAATGGGA+CGG | - | chr1_2:4893906-4893925 | Msa0050860:intron | 50.0% | |
GACACGGGTAAGGATTTGGA+AGG | + | chr1_2:4894387-4894406 | None:intergenic | 50.0% | |
CTGAGACACGGGTAAGGATT+TGG | + | chr1_2:4894391-4894410 | None:intergenic | 50.0% | |
AGGAGGAATGAAGAGGACGT+GGG | + | chr1_2:4894461-4894480 | None:intergenic | 50.0% | |
GCAAGTGAGGAGGAATGAAG+AGG | + | chr1_2:4894468-4894487 | None:intergenic | 50.0% | |
ATTCCTCCTCACTTGCCATC+TGG | - | chr1_2:4894472-4894491 | Msa0050860:intron | 50.0% | |
GAATTGCCAGATGGCAAGTG+AGG | + | chr1_2:4894481-4894500 | None:intergenic | 50.0% | |
TACGGATGGATACCCCAGTA+AGG | - | chr1_2:4894759-4894778 | Msa0050860:intron | 50.0% | |
GGCATGCAGGCAAATGAAGA+TGG | - | chr1_2:4895222-4895241 | Msa0050860:intron | 50.0% | |
! | CTTTGGCCTTCCAAAGTCTG+AGG | + | chr1_2:4895858-4895877 | None:intergenic | 50.0% |
TGTGTGTGTGTGTGTGTGTG+TGG | + | chr1_2:4895927-4895946 | None:intergenic | 50.0% | |
CCTGTGGCATCATCGTAAAC+AGG | + | chr1_2:4896112-4896131 | None:intergenic | 50.0% | |
CCTGTTTACGATGATGCCAC+AGG | - | chr1_2:4896109-4896128 | Msa0050860:CDS | 50.0% | |
! | TTTTCCCTCGGAAGAACCTG+TGG | + | chr1_2:4896128-4896147 | None:intergenic | 50.0% |
!! | GGCTTTGTTGTAACACTCCC+TGG | + | chr1_2:4896326-4896345 | None:intergenic | 50.0% |
GGTTCGGAATTGGCAGAGGA+TGG | + | chr1_2:4890434-4890453 | None:intergenic | 55.0% | |
CAGGGGTTAGGGTTCGGAAT+TGG | + | chr1_2:4890444-4890463 | None:intergenic | 55.0% | |
TGCACACAGGGGTTAGGGTT+CGG | + | chr1_2:4890450-4890469 | None:intergenic | 55.0% | |
GAGGAAGTAGCAATGAGCGG+CGG | + | chr1_2:4890497-4890516 | None:intergenic | 55.0% | |
TCCTCCGTTCGCCGTTGTAA+AGG | - | chr1_2:4890512-4890531 | Msa0050860:three_prime_UTR | 55.0% | |
ACCTTTACAACGGCGAACGG+AGG | + | chr1_2:4890516-4890535 | None:intergenic | 55.0% | |
!! | GGGTCTGGTTCGGTATGGTA+TGG | + | chr1_2:4891775-4891794 | None:intergenic | 55.0% |
!! | AACACGGGTCTGGTTCGGTA+TGG | + | chr1_2:4891780-4891799 | None:intergenic | 55.0% |
CCACCAATGAAACACGGGTC+TGG | + | chr1_2:4891790-4891809 | None:intergenic | 55.0% | |
CCAGACCCGTGTTTCATTGG+TGG | - | chr1_2:4891787-4891806 | Msa0050860:CDS | 55.0% | |
TCTACTTGGACCCCTCTGCT+AGG | - | chr1_2:4891822-4891841 | Msa0050860:CDS | 55.0% | |
GCCAGATGTGGGGGACAAAA+AGG | + | chr1_2:4892875-4892894 | None:intergenic | 55.0% | |
ACTAGTATAGAGAGGGGCGG+GGG | + | chr1_2:4892936-4892955 | None:intergenic | 55.0% | |
CACTAGTATAGAGAGGGGCG+GGG | + | chr1_2:4892937-4892956 | None:intergenic | 55.0% | |
GCACTAGTATAGAGAGGGGC+GGG | + | chr1_2:4892938-4892957 | None:intergenic | 55.0% | |
GGCACTAGTATAGAGAGGGG+CGG | + | chr1_2:4892939-4892958 | None:intergenic | 55.0% | |
CGGACTGTTTGTCAGTTCCC+TGG | - | chr1_2:4893407-4893426 | Msa0050860:intron | 55.0% | |
TGTCAGTTCCCTGGACACCA+AGG | - | chr1_2:4893416-4893435 | Msa0050860:intron | 55.0% | |
CAAAATGCTCGCCGTCCCAT+TGG | + | chr1_2:4893920-4893939 | None:intergenic | 55.0% | |
ATCTACTTGAGCGCCACCTG+TGG | + | chr1_2:4893943-4893962 | None:intergenic | 55.0% | |
ACTGGCTGAGACCTGCAGAA+AGG | + | chr1_2:4894070-4894089 | None:intergenic | 55.0% | |
GAGGAGGAATGAAGAGGACG+TGG | + | chr1_2:4894462-4894481 | None:intergenic | 55.0% | |
TTGCCAGATGGCAAGTGAGG+AGG | + | chr1_2:4894478-4894497 | None:intergenic | 55.0% | |
TGTGTCAAGTTCAGCGGCGA+TGG | - | chr1_2:4895799-4895818 | Msa0050860:intron | 55.0% | |
TGATGCCACAGGTTCTTCCG+AGG | - | chr1_2:4896120-4896139 | Msa0050860:intron | 55.0% | |
GATGCCACAGGTTCTTCCGA+GGG | - | chr1_2:4896121-4896140 | Msa0050860:intron | 55.0% | |
! | TGGCAGAGGATGGTGCTAGC+CGG | + | chr1_2:4890424-4890443 | None:intergenic | 60.0% |
GGTGGTGCACACAGGGGTTA+GGG | + | chr1_2:4890455-4890474 | None:intergenic | 60.0% | |
ATTGGCGGTGGTGCACACAG+GGG | + | chr1_2:4890461-4890480 | None:intergenic | 60.0% | |
GATTGGCGGTGGTGCACACA+GGG | + | chr1_2:4890462-4890481 | None:intergenic | 60.0% | |
!! | GGTGAGCTGTGGTGGATTGG+CGG | + | chr1_2:4890476-4890495 | None:intergenic | 60.0% |
TCGTCCTCAAGAGAAGGCGG+TGG | - | chr1_2:4890986-4891005 | Msa0050860:intron | 60.0% | |
CTAGTATAGAGAGGGGCGGG+GGG | + | chr1_2:4892935-4892954 | None:intergenic | 60.0% | |
!! | GCACAGCACCTTGGTGTCCA+GGG | + | chr1_2:4893427-4893446 | None:intergenic | 60.0% |
!! | GGCCTGACAGCATCGACAGA+TGG | - | chr1_2:4893449-4893468 | Msa0050860:intron | 60.0% |
GGCCATCTGTCGATGCTGTC+AGG | + | chr1_2:4893454-4893473 | None:intergenic | 60.0% | |
! | GACGGCGAGCATTTTGCCAC+AGG | - | chr1_2:4893924-4893943 | Msa0050860:intron | 60.0% |
! | GGCGAGCATTTTGCCACAGG+TGG | - | chr1_2:4893927-4893946 | Msa0050860:intron | 60.0% |
GGCTGAGACCTGCAGAAAGG+AGG | + | chr1_2:4894067-4894086 | None:intergenic | 60.0% | |
AGGAAAGCTCACAGTGCCCC+AGG | - | chr1_2:4896305-4896324 | Msa0050860:intron | 60.0% | |
GGAAAGCTCACAGTGCCCCA+GGG | - | chr1_2:4896306-4896325 | Msa0050860:intron | 60.0% | |
CGGTGGTGCACACAGGGGTT+AGG | + | chr1_2:4890456-4890475 | None:intergenic | 65.0% | |
! | GGATTGGCGGTGGTGCACAC+AGG | + | chr1_2:4890463-4890482 | None:intergenic | 65.0% |
!! | GAGCTGTGGTGGATTGGCGG+TGG | + | chr1_2:4890473-4890492 | None:intergenic | 65.0% |
!! | GGCGGTGAGCTGTGGTGGAT+TGG | + | chr1_2:4890479-4890498 | None:intergenic | 65.0% |
CAATGAGCGGCGGTGAGCTG+TGG | + | chr1_2:4890487-4890506 | None:intergenic | 65.0% | |
!! | CGCACAGCACCTTGGTGTCC+AGG | + | chr1_2:4893428-4893447 | None:intergenic | 65.0% |
!! | GGACACCAAGGTGCTGTGCG+AGG | - | chr1_2:4893428-4893447 | Msa0050860:intron | 65.0% |
TCAGGCCTCGCACAGCACCT+TGG | + | chr1_2:4893436-4893455 | None:intergenic | 65.0% | |
TGAGCGGCGGTGAGCTGTGG+TGG | + | chr1_2:4890484-4890503 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 4890352 | 4896737 | 4890352 | ID=Msa0050860;Name=Msa0050860 |
chr1_2 | mRNA | 4890352 | 4896737 | 4890352 | ID=Msa0050860-mRNA-1;Parent=Msa0050860;Name=Msa0050860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=185|0.85|0.93|1|0.85|0.86|15|355|404 |
chr1_2 | exon | 4890352 | 4890958 | 4890352 | ID=Msa0050860-mRNA-1:exon:1387;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4891192 | 4891297 | 4891192 | ID=Msa0050860-mRNA-1:exon:1386;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4891474 | 4891538 | 4891474 | ID=Msa0050860-mRNA-1:exon:1385;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4891627 | 4891687 | 4891627 | ID=Msa0050860-mRNA-1:exon:1384;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4891773 | 4891858 | 4891773 | ID=Msa0050860-mRNA-1:exon:1383;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4891988 | 4892041 | 4891988 | ID=Msa0050860-mRNA-1:exon:1382;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4892293 | 4892356 | 4892293 | ID=Msa0050860-mRNA-1:exon:1381;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4892916 | 4893011 | 4892916 | ID=Msa0050860-mRNA-1:exon:1380;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4893110 | 4893184 | 4893110 | ID=Msa0050860-mRNA-1:exon:1379;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4893585 | 4893683 | 4893585 | ID=Msa0050860-mRNA-1:exon:1378;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4894027 | 4894054 | 4894027 | ID=Msa0050860-mRNA-1:exon:1377;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4895852 | 4895924 | 4895852 | ID=Msa0050860-mRNA-1:exon:1376;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4896043 | 4896132 | 4896043 | ID=Msa0050860-mRNA-1:exon:1375;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4896252 | 4896320 | 4896252 | ID=Msa0050860-mRNA-1:exon:1374;Parent=Msa0050860-mRNA-1 |
chr1_2 | exon | 4896556 | 4896737 | 4896556 | ID=Msa0050860-mRNA-1:exon:1373;Parent=Msa0050860-mRNA-1 |
chr1_2 | five_prime_UTR | 4896556 | 4896737 | 4896556 | ID=Msa0050860-mRNA-1:five_prime_utr;Parent=Msa0050860-mRNA-1 |
chr1_2 | five_prime_UTR | 4896318 | 4896320 | 4896318 | ID=Msa0050860-mRNA-1:five_prime_utr;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4896252 | 4896317 | 4896252 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4896043 | 4896132 | 4896043 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4895852 | 4895924 | 4895852 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4894027 | 4894054 | 4894027 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4893585 | 4893683 | 4893585 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4893110 | 4893184 | 4893110 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4892916 | 4893011 | 4892916 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4892293 | 4892356 | 4892293 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4891988 | 4892041 | 4891988 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4891773 | 4891858 | 4891773 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4891627 | 4891687 | 4891627 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4891474 | 4891538 | 4891474 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4891192 | 4891297 | 4891192 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | CDS | 4890707 | 4890958 | 4890707 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
chr1_2 | three_prime_UTR | 4890352 | 4890706 | 4890352 | ID=Msa0050860-mRNA-1:three_prime_utr;Parent=Msa0050860-mRNA-1 |
Gene Sequence |
Protein sequence |