Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050860 | XP_024631173.1 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050860 | sp|Q5ZLK1|DCA13_CHICK | 45.618 | 445 | 201 | 2 | 1 | 404 | 1 | 445 | 2.03e-146 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050860 | G7I5C2 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003360 | Msa0050860 | 0.931070 | 6.497232e-94 | -8.615850e-47 |
| Msa0040220 | Msa0050860 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
| Msa0042480 | Msa0050860 | 0.841000 | 6.195222e-58 | -8.615850e-47 |
| Msa0050860 | Msa0079590 | 0.853747 | 1.947949e-61 | -8.615850e-47 |
| Msa0050860 | Msa0113920 | 0.806478 | 8.067030e-50 | -8.615850e-47 |
| Msa0050860 | Msa0146580 | 0.932206 | 1.205638e-94 | -8.615850e-47 |
| Msa0050860 | Msa0426090 | 0.843069 | 1.757386e-58 | -8.615850e-47 |
| Msa0050860 | Msa0426250 | 0.813258 | 2.803853e-51 | -8.615850e-47 |
| Msa0050860 | Msa0472480 | 0.846025 | 2.813933e-59 | -8.615850e-47 |
| Msa0050860 | Msa0475810 | 0.829389 | 5.290827e-55 | -8.615850e-47 |
| Msa0050860 | Msa0717380 | 0.807622 | 4.620561e-50 | -8.615850e-47 |
| Msa0050860 | Msa0799830 | 0.818638 | 1.765600e-52 | -8.615850e-47 |
| Msa0050860 | Msa1041680 | 0.827438 | 1.564423e-54 | -8.615850e-47 |
| Msa0050860 | Msa1083370 | 0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa0050860 | Msa1166570 | 0.830560 | 2.741341e-55 | -8.615850e-47 |
| Msa0050860 | Msa1206240 | 0.812200 | 4.778717e-51 | -8.615850e-47 |
| Msa0050860 | Msa1227080 | 0.938032 | 1.312680e-98 | -8.615850e-47 |
| Msa0050860 | Msa1450560 | 0.803908 | 2.785321e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050860 | MtrunA17_Chr1g0155601 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
| Msa0050860 | MtrunA17_Chr1g0185501 | 24.206 | 252 | 147 | 9 | 95 | 311 | 26 | 268 | 7.16e-13 | 68.9 |
| Msa0050860 | MtrunA17_Chr4g0067151 | 22.553 | 235 | 146 | 6 | 91 | 315 | 73 | 281 | 3.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050860 | AT4G28450.1 | 71.460 | 452 | 81 | 2 | 1 | 404 | 1 | 452 | 0.0 | 680 |
| Msa0050860 | AT4G02730.1 | 24.221 | 289 | 168 | 11 | 56 | 319 | 31 | 293 | 2.74e-15 | 77.0 |
| Msa0050860 | AT2G22040.1 | 25.940 | 266 | 148 | 10 | 73 | 318 | 58 | 294 | 3.44e-11 | 64.3 |
| Msa0050860 | AT3G49660.1 | 20.332 | 241 | 156 | 7 | 89 | 319 | 64 | 278 | 4.37e-11 | 63.9 |
| Msa0050860 | AT3G49660.1 | 24.454 | 229 | 151 | 6 | 95 | 319 | 23 | 233 | 4.53e-11 | 63.9 |
Find 132 sgRNAs with CRISPR-Local
Find 435 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACCACTGTAAAATTTA+TGG | 0.088636 | 1_2:+4891982 | None:intergenic |
| GAAATTGAAAAGAAAGATTT+AGG | 0.137973 | 1_2:-4890397 | Msa0050860:three_prime_UTR |
| TAGTTATGATTCCAGGAAAT+TGG | 0.212222 | 1_2:-4891813 | Msa0050860:CDS |
| GTGCCTGTAGCGTTTCTTTA+TGG | 0.227292 | 1_2:+4890896 | None:intergenic |
| CGGTGGTGCACACAGGGGTT+AGG | 0.235953 | 1_2:+4896614 | None:intergenic |
| CTGCTGTGACCACCATTATA+AGG | 0.244087 | 1_2:+4891504 | None:intergenic |
| CTTACCACTGTAAAATTTAT+GGG | 0.253800 | 1_2:+4891983 | None:intergenic |
| TGTGCCAATGCAAGAAATTT+TGG | 0.255111 | 1_2:-4890525 | Msa0050860:three_prime_UTR |
| ATAACTGGGCTTGCTCTCTA+TGG | 0.278986 | 1_2:+4896712 | None:intergenic |
| TCCAAGTTGTTCTGATGCTT+TGG | 0.306051 | 1_2:+4891195 | None:intergenic |
| GGGCTTGCTCTCTATGGTTT+AGG | 0.307858 | 1_2:+4896718 | None:intergenic |
| CCATCCATTGCTCCTATAAA+AGG | 0.319195 | 1_2:+4895890 | None:intergenic |
| GATGGAAGTTATGTAATTTC+AGG | 0.319874 | 1_2:-4891250 | Msa0050860:CDS |
| TTTGGCTTCACCCAATTTCC+TGG | 0.320487 | 1_2:+4891802 | None:intergenic |
| CCAAGCTATAGAATTGGTTT+TGG | 0.322631 | 1_2:+4892018 | None:intergenic |
| TGTTTGCAGATATTCGTCTT+TGG | 0.331813 | 1_2:-4894041 | Msa0050860:intron |
| CCCCATACGAAACTATTTAC+TGG | 0.333180 | 1_2:+4892982 | None:intergenic |
| GCTGAGCTTGCTAAGAGATT+TGG | 0.339438 | 1_2:+4892919 | None:intergenic |
| GTTTGCAGATATTCGTCTTT+GGG | 0.344881 | 1_2:-4894040 | Msa0050860:intron |
| TTCTCTTGAGGACGAAGAAT+TGG | 0.350486 | 1_2:+4896089 | None:intergenic |
| GGCTTTGTTGTAACACTCCC+TGG | 0.358324 | 1_2:+4890744 | None:intergenic |
| GTGATCTTTATGAACACATT+TGG | 0.359886 | 1_2:+4891784 | None:intergenic |
| GTGGCGCTCAAGTAGATATA+TGG | 0.375359 | 1_2:-4893121 | Msa0050860:CDS |
| AGAACGAAGCCAAGACCTTC+AGG | 0.381853 | 1_2:-4896251 | Msa0050860:intron |
| CGCACAGCACCTTGGTGTCC+AGG | 0.391819 | 1_2:+4893642 | None:intergenic |
| AAATTGAAAAGAAAGATTTA+GGG | 0.397767 | 1_2:-4890396 | Msa0050860:three_prime_UTR |
| TACACCAAAATTTCTTGCAT+TGG | 0.399910 | 1_2:+4890521 | None:intergenic |
| AAAGAAGAAGCCTTGTATAT+TGG | 0.402396 | 1_2:+4890828 | None:intergenic |
| GCATAAATCTGTATGATTTA+CGG | 0.406292 | 1_2:-4892326 | Msa0050860:CDS |
| TGGATTCCAAGCTATAGAAT+TGG | 0.408247 | 1_2:+4892012 | None:intergenic |
| GTAAAATTTATGGGTTCCAT+TGG | 0.408971 | 1_2:+4891992 | None:intergenic |
| GCTAAGAGATTTGGTTCTCC+TGG | 0.410192 | 1_2:+4892928 | None:intergenic |
| CAGGGGTTAGGGTTCGGAAT+TGG | 0.410437 | 1_2:+4896626 | None:intergenic |
| ACTGCTATAGTTATGATTCC+AGG | 0.417229 | 1_2:-4891820 | Msa0050860:CDS |
| ATGATACTAACCTCAGACTT+TGG | 0.421940 | 1_2:-4891222 | Msa0050860:CDS |
| GAAGAATTGGATCGTAATTA+CGG | 0.423302 | 1_2:+4896102 | None:intergenic |
| GGATTGGCGGTGGTGCACAC+AGG | 0.426225 | 1_2:+4896607 | None:intergenic |
| AGTTATGATTCCAGGAAATT+GGG | 0.427023 | 1_2:-4891812 | Msa0050860:CDS |
| AATGAATTACCTGAAGGTCT+TGG | 0.427414 | 1_2:+4896242 | None:intergenic |
| GGTGGTGCACACAGGGGTTA+GGG | 0.430634 | 1_2:+4896615 | None:intergenic |
| AGGAAAGCTCACAGTGCCCC+AGG | 0.436680 | 1_2:-4890762 | Msa0050860:CDS |
| GGCCATCTGTCGATGCTGTC+AGG | 0.439615 | 1_2:+4893616 | None:intergenic |
| GGCGGTGAGCTGTGGTGGAT+TGG | 0.439996 | 1_2:+4896591 | None:intergenic |
| TGCACACAGGGGTTAGGGTT+CGG | 0.441760 | 1_2:+4896620 | None:intergenic |
| GTGAGAATCTTCCCTTATAA+TGG | 0.443627 | 1_2:-4891516 | Msa0050860:CDS |
| TGCTGTGACCACCATTATAA+GGG | 0.445472 | 1_2:+4891505 | None:intergenic |
| TCCTCCGTTCGCCGTTGTAA+AGG | 0.448837 | 1_2:-4896555 | Msa0050860:intron |
| TGTTACAACAAAGCCGTTGC+GGG | 0.449730 | 1_2:-4890736 | Msa0050860:CDS |
| GAAGCCTTGTATATTGGTCT+TGG | 0.453460 | 1_2:+4890834 | None:intergenic |
| AAATCTTCAATTCAATCAAA+AGG | 0.456369 | 1_2:-4890419 | Msa0050860:three_prime_UTR |
| TGTTGAAGGTGAACTGAACT+AGG | 0.456544 | 1_2:+4896685 | None:intergenic |
| TAGATATATGGAATCACAAC+AGG | 0.461587 | 1_2:-4893109 | Msa0050860:intron |
| GATTGGCGGTGGTGCACACA+GGG | 0.462317 | 1_2:+4896608 | None:intergenic |
| TGTAGATGCAATTTCGTGTA+TGG | 0.462793 | 1_2:-4895864 | Msa0050860:CDS |
| CCAAAACCAATTCTATAGCT+TGG | 0.466953 | 1_2:-4892018 | Msa0050860:CDS |
| CTTGCAATACGGTTAACTTC+AGG | 0.470144 | 1_2:+4890870 | None:intergenic |
| TGCTCTCAATGCAGTGAAGT+TGG | 0.475144 | 1_2:-4896048 | Msa0050860:CDS |
| GATATTGACTACTCACCAAC+TGG | 0.479569 | 1_2:-4891661 | Msa0050860:CDS |
| ATTTCTGTCCGCTTTAATCC+AGG | 0.483582 | 1_2:-4892946 | Msa0050860:CDS |
| TGTGTCAAGTTCAGCGGCGA+TGG | 0.483997 | 1_2:-4891268 | Msa0050860:CDS |
| AACTGTTCTATCATAAGATC+CGG | 0.487930 | 1_2:+4891624 | None:intergenic |
| AGCCAGTAAATAGTTTCGTA+TGG | 0.495618 | 1_2:-4892984 | Msa0050860:CDS |
| ATAATTCTTCTTTCCCGCAA+CGG | 0.501061 | 1_2:+4890723 | None:intergenic |
| CAATGCAGTGAAGTTGGATA+AGG | 0.505068 | 1_2:-4896042 | Msa0050860:intron |
| TGAGCGGCGGTGAGCTGTGG+TGG | 0.509257 | 1_2:+4896586 | None:intergenic |
| CAAAGTTATATCACGCTCTA+CGG | 0.510796 | 1_2:-4896287 | Msa0050860:CDS |
| GCTTTGTTGTAACACTCCCT+GGG | 0.513233 | 1_2:+4890745 | None:intergenic |
| GGCCGCATTCTTGTTTCATG+TGG | 0.514047 | 1_2:-4893597 | Msa0050860:CDS |
| TTAGGGTTCGGAATTGGCAG+AGG | 0.514464 | 1_2:+4896632 | None:intergenic |
| GCCAGTAAATAGTTTCGTAT+GGG | 0.521326 | 1_2:-4892983 | Msa0050860:CDS |
| GGTGAGCTGTGGTGGATTGG+CGG | 0.521355 | 1_2:+4896594 | None:intergenic |
| TAGCGCTGTTGATCACCAAT+GGG | 0.521520 | 1_2:-4893165 | Msa0050860:CDS |
| AGTAAGGAAAATGATAATGA+TGG | 0.524836 | 1_2:-4892292 | Msa0050860:intron |
| CGGACTGTTTGTCAGTTCCC+TGG | 0.530233 | 1_2:-4893660 | Msa0050860:CDS |
| TCAGGCCTCGCACAGCACCT+TGG | 0.533050 | 1_2:+4893634 | None:intergenic |
| CAAAATGCTCGCCGTCCCAT+TGG | 0.535842 | 1_2:+4893150 | None:intergenic |
| CAATATATATATTTATGAAG+TGG | 0.537187 | 1_2:-4890652 | Msa0050860:three_prime_UTR |
| ATTATCAGAGAAGTTGAGTG+AGG | 0.539555 | 1_2:-4890705 | Msa0050860:exon |
| TTCTATAGCTTGGAATCCAA+TGG | 0.540411 | 1_2:-4892008 | Msa0050860:CDS |
| AGTGTCTATGCCTTGCAATA+CGG | 0.542864 | 1_2:+4890859 | None:intergenic |
| GGTTCGGAATTGGCAGAGGA+TGG | 0.545542 | 1_2:+4896636 | None:intergenic |
| TATTCCACCGCCTTCTCTTG+AGG | 0.547207 | 1_2:+4896077 | None:intergenic |
| TTAGCGCTGTTGATCACCAA+TGG | 0.548979 | 1_2:-4893166 | Msa0050860:intron |
| GGCCTGACAGCATCGACAGA+TGG | 0.550525 | 1_2:-4893618 | Msa0050860:CDS |
| TTTCGTATGGGGATCAGATA+CGG | 0.552827 | 1_2:-4892971 | Msa0050860:CDS |
| ACATCGCATAACATCGGCTC+CGG | 0.555583 | 1_2:-4896665 | Msa0050860:five_prime_UTR |
| GGCATGCAGGCAAATGAAGA+TGG | 0.559590 | 1_2:-4891845 | Msa0050860:intron |
| CTTTGGCCTTCCAAAGTCTG+AGG | 0.561645 | 1_2:+4891212 | None:intergenic |
| GCCAAAGCATCAGAACAACT+TGG | 0.571500 | 1_2:-4891196 | Msa0050860:CDS |
| TACGGATGGATACCCCAGTA+AGG | 0.575067 | 1_2:-4892308 | Msa0050860:CDS |
| TGGCAGAGGATGGTGCTAGC+CGG | 0.578600 | 1_2:+4896646 | None:intergenic |
| GTGTTACAACAAAGCCGTTG+CGG | 0.579532 | 1_2:-4890737 | Msa0050860:CDS |
| GAGCTGTGGTGGATTGGCGG+TGG | 0.580519 | 1_2:+4896597 | None:intergenic |
| CAATGAGCGGCGGTGAGCTG+TGG | 0.581863 | 1_2:+4896583 | None:intergenic |
| GCACAGCACCTTGGTGTCCA+GGG | 0.584408 | 1_2:+4893643 | None:intergenic |
| GGACACCAAGGTGCTGTGCG+AGG | 0.590155 | 1_2:-4893639 | Msa0050860:CDS |
| TACTAACCTCAGACTTTGGA+AGG | 0.594251 | 1_2:-4891218 | Msa0050860:CDS |
| AGGCCATAAAGAAACGCTAC+AGG | 0.594578 | 1_2:-4890899 | Msa0050860:CDS |
| CTTACCAAGACCAATATACA+AGG | 0.596333 | 1_2:-4890838 | Msa0050860:CDS |
| TGTCAGTTCCCTGGACACCA+AGG | 0.601209 | 1_2:-4893651 | Msa0050860:CDS |
| CACACCTTTACAACGGCGAA+CGG | 0.605066 | 1_2:+4896551 | None:intergenic |
| GGAAAGCTCACAGTGCCCCA+GGG | 0.606954 | 1_2:-4890761 | Msa0050860:CDS |
| AATTCTTCGTCCTCAAGAGA+AGG | 0.607045 | 1_2:-4896087 | Msa0050860:CDS |
| CTGAAGTTAACCGTATTGCA+AGG | 0.608965 | 1_2:-4890869 | Msa0050860:CDS |
| ATCTCTTAGCAAGCTCAGCT+AGG | 0.612178 | 1_2:-4892915 | Msa0050860:intron |
| ATCATACTAAAAGAATGCAA+AGG | 0.613308 | 1_2:-4891473 | Msa0050860:intron |
| TCGTCCTCAAGAGAAGGCGG+TGG | 0.613718 | 1_2:-4896081 | Msa0050860:CDS |
| GTGACAAATTCTCGACCAGT+TGG | 0.617530 | 1_2:+4891646 | None:intergenic |
| CCGATGTTATGCGATGTTGA+AGG | 0.618493 | 1_2:+4896671 | None:intergenic |
| TTGGTTCTCCTGGATTAAAG+CGG | 0.621177 | 1_2:+4892938 | None:intergenic |
| GTCTTTGGGATATAGCTGCT+AGG | 0.627694 | 1_2:-4894026 | Msa0050860:intron |
| TGATGCCACAGGTTCTTCCG+AGG | 0.628636 | 1_2:-4890947 | Msa0050860:intron |
| AGAATCTTCCCTTATAATGG+TGG | 0.629250 | 1_2:-4891513 | Msa0050860:CDS |
| ACCTTTACAACGGCGAACGG+AGG | 0.630519 | 1_2:+4896554 | None:intergenic |
| AAATCTGTATGATTTACGGA+TGG | 0.631713 | 1_2:-4892322 | Msa0050860:CDS |
| ATCTACTTGAGCGCCACCTG+TGG | 0.634797 | 1_2:+4893127 | None:intergenic |
| GATGCCACAGGTTCTTCCGA+GGG | 0.636446 | 1_2:-4890946 | Msa0050860:intron |
| ATATATGCACACCTTTACAA+CGG | 0.636759 | 1_2:+4896544 | None:intergenic |
| CCAGTAAATAGTTTCGTATG+GGG | 0.638122 | 1_2:-4892982 | Msa0050860:CDS |
| GTATTCTGTGTCAAGTTCAG+CGG | 0.646929 | 1_2:-4891274 | Msa0050860:CDS |
| ACTGGTCGAGAATTTGTCAC+CGG | 0.649767 | 1_2:-4891643 | Msa0050860:CDS |
| AGTTATATCACGCTCTACGG+AGG | 0.657642 | 1_2:-4896284 | Msa0050860:CDS |
| GCTGTTGATCACCAATGGGA+CGG | 0.667148 | 1_2:-4893161 | Msa0050860:CDS |
| CCTTCAACATCGCATAACAT+CGG | 0.670795 | 1_2:-4896671 | Msa0050860:five_prime_UTR |
| ATTGGCGGTGGTGCACACAG+GGG | 0.672431 | 1_2:+4896609 | None:intergenic |
| CAATACGGTTAACTTCAGGA+AGG | 0.681036 | 1_2:+4890874 | None:intergenic |
| TCTTCGTCCTCAAGAGAAGG+CGG | 0.682148 | 1_2:-4896084 | Msa0050860:CDS |
| TTCCACATGAAACAAGAATG+CGG | 0.692579 | 1_2:+4893595 | None:intergenic |
| ACGGAGGAAGTAGCAATGAG+CGG | 0.696929 | 1_2:+4896570 | None:intergenic |
| CTTTGTTGTAACACTCCCTG+GGG | 0.701621 | 1_2:+4890746 | None:intergenic |
| GAGGAAGTAGCAATGAGCGG+CGG | 0.735597 | 1_2:+4896573 | None:intergenic |
| GAAGAAGCATGACTATCACG+AGG | 0.736007 | 1_2:-4890919 | Msa0050860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTTTTTTTTTTTTTG+TGG | - | chr1_2:4891136-4891155 | Msa0050860:intron | 10.0% |
| !! | AAATAAATAAGAAATTAGAA+TGG | - | chr1_2:4891676-4891695 | Msa0050860:intron | 10.0% |
| !!! | TAATTATGATATATTTTAAC+TGG | - | chr1_2:4892125-4892144 | Msa0050860:intron | 10.0% |
| !!! | AATTATGATATATTTTAACT+GGG | - | chr1_2:4892126-4892145 | Msa0050860:intron | 10.0% |
| !!! | TTTTTTGTAAAATTTTCTTT+TGG | - | chr1_2:4893707-4893726 | Msa0050860:intron | 10.0% |
| !! | TAATCAAAAGAAAAATAATA+AGG | + | chr1_2:4894888-4894907 | None:intergenic | 10.0% |
| !!! | TTTATTTATCATTTTGTGAT+AGG | + | chr1_2:4890643-4890662 | None:intergenic | 15.0% |
| !!! | TATTGTGAATATGATTTTAT+AGG | - | chr1_2:4891074-4891093 | Msa0050860:intron | 15.0% |
| !!! | ATATGTATAAACTATTTCTA+TGG | - | chr1_2:4891332-4891351 | Msa0050860:intron | 15.0% |
| !!! | TTTTAAATCAATCTATCAAA+TGG | + | chr1_2:4891646-4891665 | None:intergenic | 15.0% |
| !!! | GATTGATTTAAAATGATATT+TGG | - | chr1_2:4891653-4891672 | Msa0050860:CDS | 15.0% |
| !!! | ACAATTTTCAAAATATAAGT+TGG | - | chr1_2:4892013-4892032 | Msa0050860:CDS | 15.0% |
| !!! | ACAAGATTATTTTAGTTTAA+AGG | - | chr1_2:4892086-4892105 | Msa0050860:intron | 15.0% |
| !! | AATTTACCAAAATTAAAGTT+TGG | + | chr1_2:4892264-4892283 | None:intergenic | 15.0% |
| !! | GTTAATATAGTAGTTTAAAA+CGG | + | chr1_2:4892992-4893011 | None:intergenic | 15.0% |
| !!! | CATTTAAAATTGAAAGAAAA+AGG | + | chr1_2:4893076-4893095 | None:intergenic | 15.0% |
| !!! | TAATATTGTCATTTTGTTTA+TGG | - | chr1_2:4893376-4893395 | Msa0050860:intron | 15.0% |
| !! | GATTATATAATTAACACTAA+GGG | - | chr1_2:4894220-4894239 | Msa0050860:intron | 15.0% |
| !! | ATTATATAATTAACACTAAG+GGG | - | chr1_2:4894221-4894240 | Msa0050860:intron | 15.0% |
| !!! | GGTTTTTATTTAGTTAAATA+TGG | - | chr1_2:4894561-4894580 | Msa0050860:intron | 15.0% |
| !!! | GAACTGATTTATATTTATTT+TGG | - | chr1_2:4894632-4894651 | Msa0050860:intron | 15.0% |
| !!! | ATTATCATTAGTTTAAATCA+TGG | - | chr1_2:4894814-4894833 | Msa0050860:intron | 15.0% |
| !! | TTGTAATTATTATTAAACTG+AGG | - | chr1_2:4894861-4894880 | Msa0050860:intron | 15.0% |
| !! | TAAGAATATTTCAATAAACT+CGG | + | chr1_2:4895732-4895751 | None:intergenic | 15.0% |
| !! | CAATATATATATTTATGAAG+TGG | - | chr1_2:4896415-4896434 | Msa0050860:intron | 15.0% |
| !! | AAATTGAAAAGAAAGATTTA+GGG | - | chr1_2:4896671-4896690 | Msa0050860:five_prime_UTR | 15.0% |
| !! | TTCACAATAAAAAACACATA+GGG | + | chr1_2:4891063-4891082 | None:intergenic | 20.0% |
| !! | ATTCACAATAAAAAACACAT+AGG | + | chr1_2:4891064-4891083 | None:intergenic | 20.0% |
| !!! | TGAATATGATTTTATAGGAT+AGG | - | chr1_2:4891079-4891098 | Msa0050860:intron | 20.0% |
| !! | AAAAATTTAGAAGAGAAGAT+AGG | - | chr1_2:4891607-4891626 | Msa0050860:intron | 20.0% |
| !! | AAAATTTAGAAGAGAAGATA+GGG | - | chr1_2:4891608-4891627 | Msa0050860:intron | 20.0% |
| !! | ATAAGAAATTAGAATGGTTA+TGG | - | chr1_2:4891682-4891701 | Msa0050860:intron | 20.0% |
| !!! | TTCTAGTTAACATTTCTTTA+AGG | - | chr1_2:4892293-4892312 | Msa0050860:CDS | 20.0% |
| !! | TCTAGTTAACATTTCTTTAA+GGG | - | chr1_2:4892294-4892313 | Msa0050860:CDS | 20.0% |
| !!! | ATCTAAACAATTTTGTTTAC+AGG | + | chr1_2:4892369-4892388 | None:intergenic | 20.0% |
| !!! | TTTGAAGATTCTTTAGTTTT+GGG | + | chr1_2:4892537-4892556 | None:intergenic | 20.0% |
| !!! | ATTTGAAGATTCTTTAGTTT+TGG | + | chr1_2:4892538-4892557 | None:intergenic | 20.0% |
| !! | TAAAGAATCTTCAAATTACA+GGG | - | chr1_2:4892542-4892561 | Msa0050860:intron | 20.0% |
| !! | CCAGTAAAAAAAAATTGTTT+CGG | + | chr1_2:4892574-4892593 | None:intergenic | 20.0% |
| !!! | CGAAACAATTTTTTTTTACT+GGG | - | chr1_2:4892572-4892591 | Msa0050860:intron | 20.0% |
| !!! | GAAACAATTTTTTTTTACTG+GGG | - | chr1_2:4892573-4892592 | Msa0050860:intron | 20.0% |
| !!! | AAACAATTTTTTTTTACTGG+GGG | - | chr1_2:4892574-4892593 | Msa0050860:intron | 20.0% |
| !!! | TTTAACCTCTAAATGTTTTA+TGG | + | chr1_2:4892817-4892836 | None:intergenic | 20.0% |
| !!! | TTAGCAATTTTAAATGTTCT+GGG | - | chr1_2:4893147-4893166 | Msa0050860:CDS | 20.0% |
| !!! | ACTTTTATCATATAAGAAAC+AGG | + | chr1_2:4893209-4893228 | None:intergenic | 20.0% |
| !!! | AATACATCAAACTTTTGTTA+TGG | - | chr1_2:4893236-4893255 | Msa0050860:intron | 20.0% |
| !! | GTTATGGATAAGAAAAATAT+TGG | - | chr1_2:4893252-4893271 | Msa0050860:intron | 20.0% |
| !! | ATAAGAAAAATATTGGTGAA+TGG | - | chr1_2:4893259-4893278 | Msa0050860:intron | 20.0% |
| !! | AGCTTATTTAATTAGACTTT+AGG | - | chr1_2:4893291-4893310 | Msa0050860:intron | 20.0% |
| !!! | TTTTGTTTATGGAAAAAAGA+CGG | - | chr1_2:4893387-4893406 | Msa0050860:intron | 20.0% |
| !!! | TTTTTATGCTTACAAAACAT+TGG | - | chr1_2:4893860-4893879 | Msa0050860:intron | 20.0% |
| !! | TGCTAAAAATAGAATAAACA+CGG | - | chr1_2:4894197-4894216 | Msa0050860:intron | 20.0% |
| !! | GGATTATATAATTAACACTA+AGG | - | chr1_2:4894219-4894238 | Msa0050860:intron | 20.0% |
| !! | ATGTTAATCATCTTACTTAT+AGG | - | chr1_2:4894590-4894609 | Msa0050860:intron | 20.0% |
| !! | AGGAAGGAATTTATTTAATA+AGG | - | chr1_2:4894610-4894629 | Msa0050860:intron | 20.0% |
| !!! | TTTATTTTGGTTAGTAACAT+TGG | - | chr1_2:4894645-4894664 | Msa0050860:intron | 20.0% |
| !! | ACTCACGAATATAATATATT+TGG | + | chr1_2:4894995-4895014 | None:intergenic | 20.0% |
| !! | TAGTGATATTTAAATTCTTG+TGG | - | chr1_2:4895187-4895206 | Msa0050860:intron | 20.0% |
| !! | ATTAACAATTTCTCATTTGT+AGG | - | chr1_2:4895529-4895548 | Msa0050860:intron | 20.0% |
| !! | AATATTCTTATCATGCTTTA+TGG | - | chr1_2:4895742-4895761 | Msa0050860:intron | 20.0% |
| !!! | TTGTTATTCAATTAGTTAGT+TGG | - | chr1_2:4896023-4896042 | Msa0050860:intron | 20.0% |
| !! | AAATCTTCAATTCAATCAAA+AGG | - | chr1_2:4896648-4896667 | Msa0050860:five_prime_UTR | 20.0% |
| !! | GAAATTGAAAAGAAAGATTT+AGG | - | chr1_2:4896670-4896689 | Msa0050860:five_prime_UTR | 20.0% |
| !! | AAACAAAAACTATTTCAAAC+AGG | + | chr1_2:4896697-4896716 | None:intergenic | 20.0% |
| !! | GAATAGATTTTACATAAGCA+AGG | + | chr1_2:4890621-4890640 | None:intergenic | 25.0% |
| ! | AGTGAAATATTCTCTCTTTA+TGG | - | chr1_2:4890733-4890752 | Msa0050860:CDS | 25.0% |
| ! | TGAAGAGGTTTAACAATAAA+GGG | + | chr1_2:4890870-4890889 | None:intergenic | 25.0% |
| ! | ATGAAGAGGTTTAACAATAA+AGG | + | chr1_2:4890871-4890890 | None:intergenic | 25.0% |
| ! | ATGAATTAAGAAGAATGAAG+AGG | + | chr1_2:4890885-4890904 | None:intergenic | 25.0% |
| ! | ACACGCTAAAAAAAACAAAA+GGG | + | chr1_2:4890942-4890961 | None:intergenic | 25.0% |
| !! | ATTTTTGCTAGACCTTTTAT+AGG | - | chr1_2:4891165-4891184 | Msa0050860:intron | 25.0% |
| ! | ATATCTCTTTCAATTGACTA+GGG | + | chr1_2:4891236-4891255 | None:intergenic | 25.0% |
| ! | AATATCTCTTTCAATTGACT+AGG | + | chr1_2:4891237-4891256 | None:intergenic | 25.0% |
| ! | ATTAAATCGTTCATCCAAAA+AGG | + | chr1_2:4891305-4891324 | None:intergenic | 25.0% |
| ! | ATTGAAGCAACATGATTAAA+GGG | + | chr1_2:4891533-4891552 | None:intergenic | 25.0% |
| ! | AATTGAAGCAACATGATTAA+AGG | + | chr1_2:4891534-4891553 | None:intergenic | 25.0% |
| ! | TATTGTTGTACACTTGATAT+AGG | - | chr1_2:4891579-4891598 | Msa0050860:intron | 25.0% |
| ! | TGAACTCCTGAAATTAAAAT+CGG | + | chr1_2:4892043-4892062 | None:intergenic | 25.0% |
| ! | TAAAATAATCTTGTTCTTCC+TGG | + | chr1_2:4892080-4892099 | None:intergenic | 25.0% |
| !! | TCACTCAAGAAAAAGAATTT+TGG | + | chr1_2:4892166-4892185 | None:intergenic | 25.0% |
| ! | ATCAGTTAACTATTAGATAG+AGG | - | chr1_2:4892206-4892225 | Msa0050860:intron | 25.0% |
| !!! | AAACAGCCAAACTTTAATTT+TGG | - | chr1_2:4892255-4892274 | Msa0050860:intron | 25.0% |
| !!! | AAACAATTTTGTTTACAGGA+GGG | + | chr1_2:4892365-4892384 | None:intergenic | 25.0% |
| !!! | TAAACAATTTTGTTTACAGG+AGG | + | chr1_2:4892366-4892385 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTTGACGTCATA+AGG | + | chr1_2:4892428-4892447 | None:intergenic | 25.0% |
| ! | ACGTCAAATTTCAAAATTGA+AGG | - | chr1_2:4892432-4892451 | Msa0050860:intron | 25.0% |
| ! | AAAATCGATGATATGATAGA+GGG | + | chr1_2:4892492-4892511 | None:intergenic | 25.0% |
| ! | CTAAAGAATCTTCAAATTAC+AGG | - | chr1_2:4892541-4892560 | Msa0050860:intron | 25.0% |
| !!! | CCGAAACAATTTTTTTTTAC+TGG | - | chr1_2:4892571-4892590 | Msa0050860:intron | 25.0% |
| ! | ATGCTACAAAGTTAAAGAAA+GGG | + | chr1_2:4892645-4892664 | None:intergenic | 25.0% |
| ! | AATGCTACAAAGTTAAAGAA+AGG | + | chr1_2:4892646-4892665 | None:intergenic | 25.0% |
| ! | TTTCATGCTTATTATGAAAG+TGG | - | chr1_2:4892731-4892750 | Msa0050860:intron | 25.0% |
| ! | GACAGTTGTTTAAACTATAA+TGG | - | chr1_2:4892753-4892772 | Msa0050860:intron | 25.0% |
| ! | AACAACCATAAAACATTTAG+AGG | - | chr1_2:4892809-4892828 | Msa0050860:intron | 25.0% |
| !! | CTTAGCAATTTTAAATGTTC+TGG | - | chr1_2:4893146-4893165 | Msa0050860:CDS | 25.0% |
| ! | TAATTAAATAAGCTGATGCA+TGG | + | chr1_2:4893285-4893304 | None:intergenic | 25.0% |
| ! | AGTAAAAGAAAAACGAAAAG+AGG | + | chr1_2:4893519-4893538 | None:intergenic | 25.0% |
| ! | GCTAAAAATAGAATAAACAC+GGG | - | chr1_2:4894198-4894217 | Msa0050860:intron | 25.0% |
| ! | TAATCATCTTACTTATAGGA+AGG | - | chr1_2:4894594-4894613 | Msa0050860:intron | 25.0% |
| !!! | TTTTTTGTTTTTTCAGTGAC+AGG | - | chr1_2:4894717-4894736 | Msa0050860:intron | 25.0% |
| ! | GCATAAATCTGTATGATTTA+CGG | - | chr1_2:4894741-4894760 | Msa0050860:intron | 25.0% |
| !! | TCATTATCATTTTCCTTACT+GGG | + | chr1_2:4894775-4894794 | None:intergenic | 25.0% |
| !! | ATCATTATCATTTTCCTTAC+TGG | + | chr1_2:4894776-4894795 | None:intergenic | 25.0% |
| !! | AGTAAGGAAAATGATAATGA+TGG | - | chr1_2:4894775-4894794 | Msa0050860:intron | 25.0% |
| !!! | CTTTTGATTATACATATCCT+TGG | - | chr1_2:4894898-4894917 | Msa0050860:intron | 25.0% |
| !! | TTTTTCTGCTTCATATCTTT+TGG | - | chr1_2:4894961-4894980 | Msa0050860:intron | 25.0% |
| ! | CTTACCACTGTAAAATTTAT+GGG | + | chr1_2:4895087-4895106 | None:intergenic | 25.0% |
| ! | ACTTACCACTGTAAAATTTA+TGG | + | chr1_2:4895088-4895107 | None:intergenic | 25.0% |
| !! | TTCTTGTGGACAAATTTTAT+TGG | - | chr1_2:4895201-4895220 | Msa0050860:intron | 25.0% |
| ! | AGTAAGAAGATAAAATGACA+AGG | + | chr1_2:4895492-4895511 | None:intergenic | 25.0% |
| ! | ATCATACTAAAAGAATGCAA+AGG | - | chr1_2:4895594-4895613 | Msa0050860:intron | 25.0% |
| !! | AATCTTTATCTTTTGTACAC+AGG | - | chr1_2:4895770-4895789 | Msa0050860:intron | 25.0% |
| !! | ATCTTTATCTTTTGTACACA+GGG | - | chr1_2:4895771-4895790 | Msa0050860:intron | 25.0% |
| ! | AAACTGTCATCTATTAATTG+TGG | - | chr1_2:4895958-4895977 | Msa0050860:intron | 25.0% |
| !! | AGTTTATATACTGTTTTCTC+AGG | - | chr1_2:4896442-4896461 | Msa0050860:intron | 25.0% |
| !! | GAAATCAATAGCTAATTTTG+TGG | - | chr1_2:4896494-4896513 | Msa0050860:intron | 25.0% |
| !! | CTGAACTAGGTTTTATAACT+GGG | + | chr1_2:4890372-4890391 | None:intergenic | 30.0% |
| !! | ACTGAACTAGGTTTTATAAC+TGG | + | chr1_2:4890373-4890392 | None:intergenic | 30.0% |
| ATATATGCACACCTTTACAA+CGG | + | chr1_2:4890526-4890545 | None:intergenic | 30.0% | |
| ATTGACACTTCTACTGAATT+TGG | - | chr1_2:4890699-4890718 | Msa0050860:exon | 30.0% | |
| GACACGCTAAAAAAAACAAA+AGG | + | chr1_2:4890943-4890962 | None:intergenic | 30.0% | |
| GAAGAATTGGATCGTAATTA+CGG | + | chr1_2:4890968-4890987 | None:intergenic | 30.0% | |
| CAATTGAAAGAGATATTCTC+TGG | - | chr1_2:4891240-4891259 | Msa0050860:CDS | 30.0% | |
| ! | TACTTCAATTTTCCTTACTC+AGG | - | chr1_2:4891278-4891297 | Msa0050860:CDS | 30.0% |
| !! | GTTTATAAGCACTTTTGAGA+CGG | + | chr1_2:4891494-4891513 | None:intergenic | 30.0% |
| TCAATTTCATGCTTAGCTAA+TGG | - | chr1_2:4891548-4891567 | Msa0050860:intron | 30.0% | |
| TTGTACACTTGATATAGGAT+TGG | - | chr1_2:4891584-4891603 | Msa0050860:intron | 30.0% | |
| AATGGTTATGGTTATGCTAA+TGG | - | chr1_2:4891694-4891713 | Msa0050860:intron | 30.0% | |
| ATGGTTATGGTTATGCTAAT+GGG | - | chr1_2:4891695-4891714 | Msa0050860:intron | 30.0% | |
| GAACTCCTGAAATTAAAATC+GGG | + | chr1_2:4892042-4892061 | None:intergenic | 30.0% | |
| !! | AACAATTTTGTTTACAGGAG+GGG | + | chr1_2:4892364-4892383 | None:intergenic | 30.0% |
| CAAAGAATCTTCAAACTACA+GGG | + | chr1_2:4892397-4892416 | None:intergenic | 30.0% | |
| !! | GTTTGAAGATTCTTTGGTTT+TGG | - | chr1_2:4892401-4892420 | Msa0050860:intron | 30.0% |
| CAAAATCGATGATATGATAG+AGG | + | chr1_2:4892493-4892512 | None:intergenic | 30.0% | |
| TGTACAGTCAAAATTCATGA+AGG | - | chr1_2:4892511-4892530 | Msa0050860:intron | 30.0% | |
| TGTAGCATTACACATGTAAT+TGG | - | chr1_2:4892657-4892676 | Msa0050860:intron | 30.0% | |
| CTTTGCATAATTCTCATAGA+TGG | - | chr1_2:4892780-4892799 | Msa0050860:intron | 30.0% | |
| ! | TATATTTGCTTTCTGAAGAG+TGG | - | chr1_2:4893171-4893190 | Msa0050860:intron | 30.0% |
| AATTAGACTTTAGGCAATGA+TGG | - | chr1_2:4893300-4893319 | Msa0050860:intron | 30.0% | |
| !! | TTTTCATGTTGGTTACAACT+TGG | - | chr1_2:4893332-4893351 | Msa0050860:intron | 30.0% |
| ! | TTTCATGTTGGTTACAACTT+GGG | - | chr1_2:4893333-4893352 | Msa0050860:intron | 30.0% |
| AAAGAAAAACGAAAAGAGGT+TGG | + | chr1_2:4893515-4893534 | None:intergenic | 30.0% | |
| CTCAATTAAGACAACTATTG+AGG | - | chr1_2:4893661-4893680 | Msa0050860:CDS | 30.0% | |
| AATTAAGACAACTATTGAGG+TGG | - | chr1_2:4893664-4893683 | Msa0050860:CDS | 30.0% | |
| ! | ATGTTTGGAAGAATGCATTT+TGG | - | chr1_2:4893779-4893798 | Msa0050860:intron | 30.0% |
| !! | AATGCATTTTGGTAAGTCAT+AGG | - | chr1_2:4893790-4893809 | Msa0050860:intron | 30.0% |
| !! | ATGCATTTTGGTAAGTCATA+GGG | - | chr1_2:4893791-4893810 | Msa0050860:intron | 30.0% |
| ! | ATAGGGCTGTTATTTATTTC+AGG | - | chr1_2:4893808-4893827 | Msa0050860:intron | 30.0% |
| TAGATATATGGAATCACAAC+AGG | - | chr1_2:4893958-4893977 | Msa0050860:intron | 30.0% | |
| TAAGAGTCTACAAAAGTAGT+CGG | + | chr1_2:4894026-4894045 | None:intergenic | 30.0% | |
| ATATAACCTCCTTGTAGAAA+TGG | - | chr1_2:4894292-4894311 | Msa0050860:intron | 30.0% | |
| TTAGATGTACCATTTCTACA+AGG | + | chr1_2:4894304-4894323 | None:intergenic | 30.0% | |
| ACTAGGGAAAATAACTGAAA+GGG | + | chr1_2:4894425-4894444 | None:intergenic | 30.0% | |
| ATTAAGGTCAATGTTCTCAA+TGG | + | chr1_2:4894529-4894548 | None:intergenic | 30.0% | |
| AACCAAGACTAACTAGATTA+AGG | + | chr1_2:4894545-4894564 | None:intergenic | 30.0% | |
| AAATCTGTATGATTTACGGA+TGG | - | chr1_2:4894745-4894764 | Msa0050860:intron | 30.0% | |
| ! | CATTATCATTTTCCTTACTG+GGG | + | chr1_2:4894774-4894793 | None:intergenic | 30.0% |
| GTAAAATTTATGGGTTCCAT+TGG | + | chr1_2:4895078-4895097 | None:intergenic | 30.0% | |
| TAGTTATGATTCCAGGAAAT+TGG | - | chr1_2:4895254-4895273 | Msa0050860:intron | 30.0% | |
| AGTTATGATTCCAGGAAATT+GGG | - | chr1_2:4895255-4895274 | Msa0050860:intron | 30.0% | |
| GTGATCTTTATGAACACATT+TGG | + | chr1_2:4895286-4895305 | None:intergenic | 30.0% | |
| ! | ATTTTCATGTTTCACTCTAC+AGG | - | chr1_2:4895380-4895399 | Msa0050860:intron | 30.0% |
| AACTGTTCTATCATAAGATC+CGG | + | chr1_2:4895446-4895465 | None:intergenic | 30.0% | |
| AAGGTTATAATGAAGTCCAA+GGG | + | chr1_2:4895473-4895492 | None:intergenic | 30.0% | |
| ! | AGAAATCTTTTAAACAGCTG+AGG | + | chr1_2:4895696-4895715 | None:intergenic | 30.0% |
| GATGGAAGTTATGTAATTTC+AGG | - | chr1_2:4895817-4895836 | Msa0050860:intron | 30.0% | |
| TTCAATTAGTTAGTTGGCTA+TGG | - | chr1_2:4896029-4896048 | Msa0050860:intron | 30.0% | |
| CTCAGAAGAGAAATTATTAG+AGG | + | chr1_2:4896060-4896079 | None:intergenic | 30.0% | |
| CTAATAATTTCTCTTCTGAG+AGG | - | chr1_2:4896060-4896079 | Msa0050860:CDS | 30.0% | |
| ! | AAAGAAGAAGCCTTGTATAT+TGG | + | chr1_2:4896242-4896261 | None:intergenic | 30.0% |
| TACACCAAAATTTCTTGCAT+TGG | + | chr1_2:4896549-4896568 | None:intergenic | 30.0% | |
| CAAAGTTATATCACGCTCTA+CGG | - | chr1_2:4890780-4890799 | Msa0050860:CDS | 35.0% | |
| AATGAATTACCTGAAGGTCT+TGG | + | chr1_2:4890828-4890847 | None:intergenic | 35.0% | |
| GCATTGAATGAATTACCTGA+AGG | + | chr1_2:4890834-4890853 | None:intergenic | 35.0% | |
| ! | TAGACCTTTTATAGGAGCAA+TGG | - | chr1_2:4891173-4891192 | Msa0050860:intron | 35.0% |
| TGTAGATGCAATTTCGTGTA+TGG | - | chr1_2:4891203-4891222 | Msa0050860:CDS | 35.0% | |
| ! | AGAGATATTCTCTGGTTCAA+TGG | - | chr1_2:4891248-4891267 | Msa0050860:CDS | 35.0% |
| ! | ATATTCTCTGGTTCAATGGA+TGG | - | chr1_2:4891252-4891271 | Msa0050860:CDS | 35.0% |
| ! | CTTATTTCCACAAGCTTTTC+AGG | + | chr1_2:4891419-4891438 | None:intergenic | 35.0% |
| CTGAAAAGCTTGTGGAAATA+AGG | - | chr1_2:4891417-4891436 | Msa0050860:intron | 35.0% | |
| AGAAAGATTGGAAGAGTGAT+GGG | - | chr1_2:4891721-4891740 | Msa0050860:intron | 35.0% | |
| ATGCTGTTGAAAGTTTGGTT+TGG | - | chr1_2:4891747-4891766 | Msa0050860:intron | 35.0% | |
| AAAAACCACCAATGAAACAC+GGG | + | chr1_2:4891795-4891814 | None:intergenic | 35.0% | |
| GAAAAACCACCAATGAAACA+CGG | + | chr1_2:4891796-4891815 | None:intergenic | 35.0% | |
| ATTACAAATAGCCTAGCAGA+GGG | + | chr1_2:4891836-4891855 | None:intergenic | 35.0% | |
| GCTAGGCTATTTGTAATCTT+TGG | - | chr1_2:4891839-4891858 | Msa0050860:CDS | 35.0% | |
| TGTCTACAAGTTTCTTGACT+GGG | + | chr1_2:4891913-4891932 | None:intergenic | 35.0% | |
| !!! | GGATACCCGATTTTAATTTC+AGG | - | chr1_2:4892034-4892053 | Msa0050860:intron | 35.0% |
| TTCAGTAGATAGTAAGATCC+AGG | - | chr1_2:4892059-4892078 | Msa0050860:intron | 35.0% | |
| CTAGAAATCGCTAATGTTAC+AGG | + | chr1_2:4892337-4892356 | None:intergenic | 35.0% | |
| CCAAAGAATCTTCAAACTAC+AGG | + | chr1_2:4892398-4892417 | None:intergenic | 35.0% | |
| CCTGTAGTTTGAAGATTCTT+TGG | - | chr1_2:4892395-4892414 | Msa0050860:intron | 35.0% | |
| AAAATCCGCTCAAATTACAG+GGG | + | chr1_2:4892468-4892487 | None:intergenic | 35.0% | |
| CAAAATCCGCTCAAATTACA+GGG | + | chr1_2:4892469-4892488 | None:intergenic | 35.0% | |
| ACTGTAATATTAGCGGTTTC+TGG | + | chr1_2:4892604-4892623 | None:intergenic | 35.0% | |
| AGAAACCGCTAATATTACAG+TGG | - | chr1_2:4892603-4892622 | Msa0050860:intron | 35.0% | |
| GAAACCGCTAATATTACAGT+GGG | - | chr1_2:4892604-4892623 | Msa0050860:intron | 35.0% | |
| AAACCGCTAATATTACAGTG+GGG | - | chr1_2:4892605-4892624 | Msa0050860:intron | 35.0% | |
| TTACCCCACTGTAATATTAG+CGG | + | chr1_2:4892611-4892630 | None:intergenic | 35.0% | |
| ! | TTTTCCAACCTCCTTATAAG+TGG | - | chr1_2:4892687-4892706 | Msa0050860:intron | 35.0% |
| TTTCCAACCTCCTTATAAGT+GGG | - | chr1_2:4892688-4892707 | Msa0050860:intron | 35.0% | |
| TAATGGCACTAGTATAGAGA+GGG | + | chr1_2:4892943-4892962 | None:intergenic | 35.0% | |
| ! | CAAGTAAGGAAAAGGTGTAA+TGG | + | chr1_2:4892960-4892979 | None:intergenic | 35.0% |
| TTGAGCATCAAGTAAGGAAA+AGG | + | chr1_2:4892968-4892987 | None:intergenic | 35.0% | |
| TGTTTGCAGATATTCGTCTT+TGG | - | chr1_2:4893026-4893045 | Msa0050860:intron | 35.0% | |
| GTTTGCAGATATTCGTCTTT+GGG | - | chr1_2:4893027-4893046 | Msa0050860:intron | 35.0% | |
| ! | TTCATGTTGGTTACAACTTG+GGG | - | chr1_2:4893334-4893353 | Msa0050860:intron | 35.0% |
| TTCCACATGAAACAAGAATG+CGG | + | chr1_2:4893475-4893494 | None:intergenic | 35.0% | |
| ! | AACTTTTCTGATGTGTGAAC+TGG | - | chr1_2:4893576-4893595 | Msa0050860:intron | 35.0% |
| TTATGTTCAGTGTCAGACTT+TGG | - | chr1_2:4893603-4893622 | Msa0050860:CDS | 35.0% | |
| !! | AATGTTCCTGTTGCTTCTTT+TGG | - | chr1_2:4893626-4893645 | Msa0050860:CDS | 35.0% |
| !! | ATGTTCCTGTTGCTTCTTTT+GGG | - | chr1_2:4893627-4893646 | Msa0050860:CDS | 35.0% |
| !!! | TTTGAACTTTTTTCCCTAGC+CGG | - | chr1_2:4893747-4893766 | Msa0050860:intron | 35.0% |
| TTCCAAACATAAACACTTGC+CGG | + | chr1_2:4893769-4893788 | None:intergenic | 35.0% | |
| AGCCAGTAAATAGTTTCGTA+TGG | - | chr1_2:4894083-4894102 | Msa0050860:intron | 35.0% | |
| GCCAGTAAATAGTTTCGTAT+GGG | - | chr1_2:4894084-4894103 | Msa0050860:intron | 35.0% | |
| CCAGTAAATAGTTTCGTATG+GGG | - | chr1_2:4894085-4894104 | Msa0050860:intron | 35.0% | |
| CTGCAATTACAATACAACAG+TGG | - | chr1_2:4894250-4894269 | Msa0050860:intron | 35.0% | |
| CTAGGGAAAATAACTGAAAG+GGG | + | chr1_2:4894424-4894443 | None:intergenic | 35.0% | |
| GACTAGGGAAAATAACTGAA+AGG | + | chr1_2:4894426-4894445 | None:intergenic | 35.0% | |
| ATTGATGGGAGTTGAGTTAA+CGG | + | chr1_2:4894503-4894522 | None:intergenic | 35.0% | |
| GTTCTCAATGGTGAATTGAT+GGG | + | chr1_2:4894517-4894536 | None:intergenic | 35.0% | |
| TGTTCTCAATGGTGAATTGA+TGG | + | chr1_2:4894518-4894537 | None:intergenic | 35.0% | |
| ! | GACCTTAATCTAGTTAGTCT+TGG | - | chr1_2:4894540-4894559 | Msa0050860:intron | 35.0% |
| !!! | CATGGCACATGTTTTGATTT+TGG | - | chr1_2:4894832-4894851 | Msa0050860:intron | 35.0% |
| !! | CCAAGCTATAGAATTGGTTT+TGG | + | chr1_2:4895052-4895071 | None:intergenic | 35.0% |
| CCAAAACCAATTCTATAGCT+TGG | - | chr1_2:4895049-4895068 | Msa0050860:intron | 35.0% | |
| TGGATTCCAAGCTATAGAAT+TGG | + | chr1_2:4895058-4895077 | None:intergenic | 35.0% | |
| TTCTATAGCTTGGAATCCAA+TGG | - | chr1_2:4895059-4895078 | Msa0050860:intron | 35.0% | |
| ! | GGAACCCATAAATTTTACAG+TGG | - | chr1_2:4895080-4895099 | Msa0050860:intron | 35.0% |
| !! | AATAAAAGCATCAGAACCAC+TGG | + | chr1_2:4895128-4895147 | None:intergenic | 35.0% |
| ! | GACAAATTTTATTGGCATGC+AGG | - | chr1_2:4895209-4895228 | Msa0050860:intron | 35.0% |
| ACTGCTATAGTTATGATTCC+AGG | - | chr1_2:4895247-4895266 | Msa0050860:intron | 35.0% | |
| ACGTTTCTGCAGTGTAATTA+TGG | - | chr1_2:4895304-4895323 | Msa0050860:intron | 35.0% | |
| CAAGGTTATAATGAAGTCCA+AGG | + | chr1_2:4895474-4895493 | None:intergenic | 35.0% | |
| GTGAGAATCTTCCCTTATAA+TGG | - | chr1_2:4895551-4895570 | Msa0050860:intron | 35.0% | |
| AGAATCTTCCCTTATAATGG+TGG | - | chr1_2:4895554-4895573 | Msa0050860:intron | 35.0% | |
| ATGATACTAACCTCAGACTT+TGG | - | chr1_2:4895845-4895864 | Msa0050860:intron | 35.0% | |
| ATCTCAGGGAATGAATTGAA+GGG | + | chr1_2:4896086-4896105 | None:intergenic | 35.0% | |
| AATCTCAGGGAATGAATTGA+AGG | + | chr1_2:4896087-4896106 | None:intergenic | 35.0% | |
| CTTACCAAGACCAATATACA+AGG | - | chr1_2:4896229-4896248 | Msa0050860:intron | 35.0% | |
| AGCTGATGCTAAGAAAAAGA+AGG | - | chr1_2:4896274-4896293 | Msa0050860:CDS | 35.0% | |
| CTAAGAAAAAGAAGGAAGAG+AGG | - | chr1_2:4896282-4896301 | Msa0050860:CDS | 35.0% | |
| ATAATTCTTCTTTCCCGCAA+CGG | + | chr1_2:4896347-4896366 | None:intergenic | 35.0% | |
| ATTATCAGAGAAGTTGAGTG+AGG | - | chr1_2:4896362-4896381 | Msa0050860:intron | 35.0% | |
| !! | TTGCATTTTTCAGTATGCAC+TGG | + | chr1_2:4896398-4896417 | None:intergenic | 35.0% |
| ! | ATACTGTTTTCTCAGGCAAA+TGG | - | chr1_2:4896449-4896468 | Msa0050860:intron | 35.0% |
| ! | TTTTGTGGTGTTTTACTGCT+TGG | - | chr1_2:4896509-4896528 | Msa0050860:intron | 35.0% |
| ! | TGTGCCAATGCAAGAAATTT+TGG | - | chr1_2:4896542-4896561 | Msa0050860:intron | 35.0% |
| TGTTGAAGGTGAACTGAACT+AGG | + | chr1_2:4890385-4890404 | None:intergenic | 40.0% | |
| CCTTCAACATCGCATAACAT+CGG | - | chr1_2:4890396-4890415 | Msa0050860:three_prime_UTR | 40.0% | |
| TTCTCTTGAGGACGAAGAAT+TGG | + | chr1_2:4890981-4891000 | None:intergenic | 40.0% | |
| AATTCTTCGTCCTCAAGAGA+AGG | - | chr1_2:4890980-4890999 | Msa0050860:intron | 40.0% | |
| CAATGCAGTGAAGTTGGATA+AGG | - | chr1_2:4891025-4891044 | Msa0050860:intron | 40.0% | |
| CCATCCATTGCTCCTATAAA+AGG | + | chr1_2:4891180-4891199 | None:intergenic | 40.0% | |
| ! | CCTTTTATAGGAGCAATGGA+TGG | - | chr1_2:4891177-4891196 | Msa0050860:intron | 40.0% |
| ! | TTCCTTACTCAGGTCCTTTT+TGG | - | chr1_2:4891288-4891307 | Msa0050860:intron | 40.0% |
| ATCCAAAAAGGACCTGAGTA+AGG | + | chr1_2:4891293-4891312 | None:intergenic | 40.0% | |
| AAGCTATCCTGAAAAGCTTG+TGG | - | chr1_2:4891409-4891428 | Msa0050860:intron | 40.0% | |
| !!! | AAGCACTTTTGAGACGGTTT+TGG | + | chr1_2:4891488-4891507 | None:intergenic | 40.0% |
| !! | GCTAATGGGTTGAGAAAGAT+TGG | - | chr1_2:4891709-4891728 | Msa0050860:intron | 40.0% |
| GAGAAAGATTGGAAGAGTGA+TGG | - | chr1_2:4891720-4891739 | Msa0050860:intron | 40.0% | |
| ! | GGTTGATGCTGTTGAAAGTT+TGG | - | chr1_2:4891742-4891761 | Msa0050860:intron | 40.0% |
| !! | GGTTTTTCAACACGTCTACT+TGG | - | chr1_2:4891808-4891827 | Msa0050860:CDS | 40.0% |
| TTACAAATAGCCTAGCAGAG+GGG | + | chr1_2:4891835-4891854 | None:intergenic | 40.0% | |
| GATTACAAATAGCCTAGCAG+AGG | + | chr1_2:4891837-4891856 | None:intergenic | 40.0% | |
| CTTGACTGGGAGTAAAATTG+TGG | + | chr1_2:4891900-4891919 | None:intergenic | 40.0% | |
| CTGTCTACAAGTTTCTTGAC+TGG | + | chr1_2:4891914-4891933 | None:intergenic | 40.0% | |
| GAAATCGCTAATGTTACAGG+AGG | + | chr1_2:4892334-4892353 | None:intergenic | 40.0% | |
| GAATCTTCAAACTACAGGGT+TGG | + | chr1_2:4892393-4892412 | None:intergenic | 40.0% | |
| GCAAAATCCGCTCAAATTAC+AGG | + | chr1_2:4892470-4892489 | None:intergenic | 40.0% | |
| TTCCAACCTCCTTATAAGTG+GGG | - | chr1_2:4892689-4892708 | Msa0050860:intron | 40.0% | |
| TGATTCTTGCCCCACTTATA+AGG | + | chr1_2:4892701-4892720 | None:intergenic | 40.0% | |
| !! | ATTCTGGTGCTTGTTTTCAC+TGG | - | chr1_2:4892901-4892920 | Msa0050860:intron | 40.0% |
| AATGGCACTAGTATAGAGAG+GGG | + | chr1_2:4892942-4892961 | None:intergenic | 40.0% | |
| GTAATGGCACTAGTATAGAG+AGG | + | chr1_2:4892944-4892963 | None:intergenic | 40.0% | |
| !! | AACGGATTGAGCATCAAGTA+AGG | + | chr1_2:4892974-4892993 | None:intergenic | 40.0% |
| TCTGCAAACACAATAAACGC+AGG | + | chr1_2:4893016-4893035 | None:intergenic | 40.0% | |
| AGACTTTAGGCAATGATGGT+AGG | - | chr1_2:4893304-4893323 | Msa0050860:intron | 40.0% | |
| TTTAGGCAATGATGGTAGGA+AGG | - | chr1_2:4893308-4893327 | Msa0050860:intron | 40.0% | |
| ! | GGTAGGAAGGATTTTCATGT+TGG | - | chr1_2:4893321-4893340 | Msa0050860:intron | 40.0% |
| ! | TCATGTTGGTTACAACTTGG+GGG | - | chr1_2:4893335-4893354 | Msa0050860:intron | 40.0% |
| !! | AAAAGAGGTTGGTACTTACG+TGG | + | chr1_2:4893504-4893523 | None:intergenic | 40.0% |
| !! | TGTTCCTGTTGCTTCTTTTG+GGG | - | chr1_2:4893628-4893647 | Msa0050860:CDS | 40.0% |
| ! | ATTGAGGTGGAATTTTGTGC+TGG | - | chr1_2:4893677-4893696 | Msa0050860:intron | 40.0% |
| CCCCATACGAAACTATTTAC+TGG | + | chr1_2:4894088-4894107 | None:intergenic | 40.0% | |
| TTTCGTATGGGGATCAGATA+CGG | - | chr1_2:4894096-4894115 | Msa0050860:intron | 40.0% | |
| ATTTCTGTCCGCTTTAATCC+AGG | - | chr1_2:4894121-4894140 | Msa0050860:intron | 40.0% | |
| ! | TTGGTTCTCCTGGATTAAAG+CGG | + | chr1_2:4894132-4894151 | None:intergenic | 40.0% |
| CAGTGGCTGATTACAATGAA+TGG | - | chr1_2:4894267-4894286 | Msa0050860:intron | 40.0% | |
| GATGTACCATTTCTACAAGG+AGG | + | chr1_2:4894301-4894320 | None:intergenic | 40.0% | |
| TATCTGATCAGTTTGTCCAG+TGG | - | chr1_2:4895109-4895128 | Msa0050860:intron | 40.0% | |
| TCATGTTTCACTCTACAGGA+TGG | - | chr1_2:4895384-4895403 | Msa0050860:intron | 40.0% | |
| ! | GATATTGACTACTCACCAAC+TGG | - | chr1_2:4895406-4895425 | Msa0050860:intron | 40.0% |
| GATAGAACAGTTAGTTCCCT+TGG | - | chr1_2:4895454-4895473 | Msa0050860:intron | 40.0% | |
| TGCTGTGACCACCATTATAA+GGG | + | chr1_2:4895565-4895584 | None:intergenic | 40.0% | |
| GTATTCTGTGTCAAGTTCAG+CGG | - | chr1_2:4895793-4895812 | Msa0050860:intron | 40.0% | |
| TACTAACCTCAGACTTTGGA+AGG | - | chr1_2:4895849-4895868 | Msa0050860:intron | 40.0% | |
| TCCAAGTTGTTCTGATGCTT+TGG | + | chr1_2:4895875-4895894 | None:intergenic | 40.0% | |
| TCGTAAACAGGTGAATCTCA+GGG | + | chr1_2:4896100-4896119 | None:intergenic | 40.0% | |
| ATCGTAAACAGGTGAATCTC+AGG | + | chr1_2:4896101-4896120 | None:intergenic | 40.0% | |
| ! | TCATGCTTCTTCTTTTCCCT+CGG | + | chr1_2:4896140-4896159 | None:intergenic | 40.0% |
| CAATACGGTTAACTTCAGGA+AGG | + | chr1_2:4896196-4896215 | None:intergenic | 40.0% | |
| CTTGCAATACGGTTAACTTC+AGG | + | chr1_2:4896200-4896219 | None:intergenic | 40.0% | |
| CTGAAGTTAACCGTATTGCA+AGG | - | chr1_2:4896198-4896217 | Msa0050860:intron | 40.0% | |
| AGTGTCTATGCCTTGCAATA+CGG | + | chr1_2:4896211-4896230 | None:intergenic | 40.0% | |
| ! | GAAGCCTTGTATATTGGTCT+TGG | + | chr1_2:4896236-4896255 | None:intergenic | 40.0% |
| AGAAAAAGAAGGAAGAGAGG+AGG | - | chr1_2:4896285-4896304 | Msa0050860:CDS | 40.0% | |
| ! | ATAACTGGGCTTGCTCTCTA+TGG | + | chr1_2:4890358-4890377 | None:intergenic | 45.0% |
| CCGATGTTATGCGATGTTGA+AGG | + | chr1_2:4890399-4890418 | None:intergenic | 45.0% | |
| AGTTATATCACGCTCTACGG+AGG | - | chr1_2:4890783-4890802 | Msa0050860:CDS | 45.0% | |
| TGCTCTCAATGCAGTGAAGT+TGG | - | chr1_2:4891019-4891038 | Msa0050860:intron | 45.0% | |
| ! | TTCTCTGGTTCAATGGATGG+AGG | - | chr1_2:4891255-4891274 | Msa0050860:CDS | 45.0% |
| AATGAAACACGGGTCTGGTT+CGG | + | chr1_2:4891785-4891804 | None:intergenic | 45.0% | |
| ! | GTGGTTGATGTATCGTCTCT+AGG | + | chr1_2:4891881-4891900 | None:intergenic | 45.0% |
| TCACACCCCTGTAATTTGAG+CGG | - | chr1_2:4892460-4892479 | Msa0050860:intron | 45.0% | |
| TTCTTGCCCCACTTATAAGG+AGG | + | chr1_2:4892698-4892717 | None:intergenic | 45.0% | |
| GGGACAAAAAGGAGGAGTAA+TGG | + | chr1_2:4892864-4892883 | None:intergenic | 45.0% | |
| AGAATGACACAGCCAGATGT+GGG | + | chr1_2:4892886-4892905 | None:intergenic | 45.0% | |
| !! | GTCTTTGGGATATAGCTGCT+AGG | - | chr1_2:4893041-4893060 | Msa0050860:intron | 45.0% |
| ! | ACATAAACACTTGCCGGCTA+GGG | + | chr1_2:4893763-4893782 | None:intergenic | 45.0% |
| ! | AACATAAACACTTGCCGGCT+AGG | + | chr1_2:4893764-4893783 | None:intergenic | 45.0% |
| AGCCGGCAAGTGTTTATGTT+TGG | - | chr1_2:4893764-4893783 | Msa0050860:intron | 45.0% | |
| TTAGCGCTGTTGATCACCAA+TGG | - | chr1_2:4893901-4893920 | Msa0050860:intron | 45.0% | |
| TAGCGCTGTTGATCACCAAT+GGG | - | chr1_2:4893902-4893921 | Msa0050860:intron | 45.0% | |
| GTGGCGCTCAAGTAGATATA+TGG | - | chr1_2:4893946-4893965 | Msa0050860:intron | 45.0% | |
| TGTTGTTACCTCCTTTCTGC+AGG | - | chr1_2:4894056-4894075 | Msa0050860:intron | 45.0% | |
| !! | GCTAAGAGATTTGGTTCTCC+TGG | + | chr1_2:4894142-4894161 | None:intergenic | 45.0% |
| !! | GCTGAGCTTGCTAAGAGATT+TGG | + | chr1_2:4894151-4894170 | None:intergenic | 45.0% |
| ATCTCTTAGCAAGCTCAGCT+AGG | - | chr1_2:4894152-4894171 | Msa0050860:intron | 45.0% | |
| ACACGGGTAAGGATTTGGAA+GGG | + | chr1_2:4894386-4894405 | None:intergenic | 45.0% | |
| ! | TACTATCTGAGACACGGGTA+AGG | + | chr1_2:4894397-4894416 | None:intergenic | 45.0% |
| !! | GAGAGTACTATCTGAGACAC+GGG | + | chr1_2:4894402-4894421 | None:intergenic | 45.0% |
| !! | GGAGAGTACTATCTGAGACA+CGG | + | chr1_2:4894403-4894422 | None:intergenic | 45.0% |
| GGGAATCATGAGAGAGACTA+GGG | + | chr1_2:4894441-4894460 | None:intergenic | 45.0% | |
| TGGGAATCATGAGAGAGACT+AGG | + | chr1_2:4894442-4894461 | None:intergenic | 45.0% | |
| GAGTTAACGGAATTGCCAGA+TGG | + | chr1_2:4894490-4894509 | None:intergenic | 45.0% | |
| TGCAGTTACGAAATGTGCCA+AGG | + | chr1_2:4894918-4894937 | None:intergenic | 45.0% | |
| ! | TTTGGCTTCACCCAATTTCC+TGG | + | chr1_2:4895268-4895287 | None:intergenic | 45.0% |
| GTGACAAATTCTCGACCAGT+TGG | + | chr1_2:4895424-4895443 | None:intergenic | 45.0% | |
| ACTGGTCGAGAATTTGTCAC+CGG | - | chr1_2:4895424-4895443 | Msa0050860:intron | 45.0% | |
| CTGCTGTGACCACCATTATA+AGG | + | chr1_2:4895566-4895585 | None:intergenic | 45.0% | |
| ! | GCCAAAGCATCAGAACAACT+TGG | - | chr1_2:4895871-4895890 | Msa0050860:CDS | 45.0% |
| TGTGTGTGTGTGGAGAAAGA+CGG | + | chr1_2:4895919-4895938 | None:intergenic | 45.0% | |
| ! | GAAGAAGCATGACTATCACG+AGG | - | chr1_2:4896148-4896167 | Msa0050860:intron | 45.0% |
| AGGCCATAAAGAAACGCTAC+AGG | - | chr1_2:4896168-4896187 | Msa0050860:intron | 45.0% | |
| GTGCCTGTAGCGTTTCTTTA+TGG | + | chr1_2:4896174-4896193 | None:intergenic | 45.0% | |
| ! | CTTTGTTGTAACACTCCCTG+GGG | + | chr1_2:4896324-4896343 | None:intergenic | 45.0% |
| ! | GCTTTGTTGTAACACTCCCT+GGG | + | chr1_2:4896325-4896344 | None:intergenic | 45.0% |
| GTGTTACAACAAAGCCGTTG+CGG | - | chr1_2:4896330-4896349 | Msa0050860:intron | 45.0% | |
| TGTTACAACAAAGCCGTTGC+GGG | - | chr1_2:4896331-4896350 | Msa0050860:intron | 45.0% | |
| !! | ACATCGCATAACATCGGCTC+CGG | - | chr1_2:4890402-4890421 | Msa0050860:three_prime_UTR | 50.0% |
| TTAGGGTTCGGAATTGGCAG+AGG | + | chr1_2:4890438-4890457 | None:intergenic | 50.0% | |
| ACGGAGGAAGTAGCAATGAG+CGG | + | chr1_2:4890500-4890519 | None:intergenic | 50.0% | |
| CACACCTTTACAACGGCGAA+CGG | + | chr1_2:4890519-4890538 | None:intergenic | 50.0% | |
| AGAACGAAGCCAAGACCTTC+AGG | - | chr1_2:4890816-4890835 | Msa0050860:CDS | 50.0% | |
| TCTTCGTCCTCAAGAGAAGG+CGG | - | chr1_2:4890983-4891002 | Msa0050860:intron | 50.0% | |
| TATTCCACCGCCTTCTCTTG+AGG | + | chr1_2:4890993-4891012 | None:intergenic | 50.0% | |
| GAACCAGACCCGTGTTTCAT+TGG | - | chr1_2:4891784-4891803 | Msa0050860:CDS | 50.0% | |
| TGCCCCACTTATAAGGAGGT+TGG | + | chr1_2:4892694-4892713 | None:intergenic | 50.0% | |
| AGATGTGGGGGACAAAAAGG+AGG | + | chr1_2:4892872-4892891 | None:intergenic | 50.0% | |
| ! | TCCTTTTTGTCCCCCACATC+TGG | - | chr1_2:4892871-4892890 | Msa0050860:intron | 50.0% |
| AATGACACAGCCAGATGTGG+GGG | + | chr1_2:4892884-4892903 | None:intergenic | 50.0% | |
| GAATGACACAGCCAGATGTG+GGG | + | chr1_2:4892885-4892904 | None:intergenic | 50.0% | |
| CAGAATGACACAGCCAGATG+TGG | + | chr1_2:4892887-4892906 | None:intergenic | 50.0% | |
| ! | CACATCTGGCTGTGTCATTC+TGG | - | chr1_2:4892885-4892904 | Msa0050860:intron | 50.0% |
| ! | GGCCGCATTCTTGTTTCATG+TGG | - | chr1_2:4893470-4893489 | Msa0050860:intron | 50.0% |
| GAGTCCCCAAAAGAAGCAAC+AGG | + | chr1_2:4893635-4893654 | None:intergenic | 50.0% | |
| !! | GCTTCTTTTGGGGACTCAGA+TGG | - | chr1_2:4893638-4893657 | Msa0050860:CDS | 50.0% |
| ! | GAGGTGGAATTTTGTGCTGG+AGG | - | chr1_2:4893680-4893699 | Msa0050860:intron | 50.0% |
| GCTGTTGATCACCAATGGGA+CGG | - | chr1_2:4893906-4893925 | Msa0050860:intron | 50.0% | |
| GACACGGGTAAGGATTTGGA+AGG | + | chr1_2:4894387-4894406 | None:intergenic | 50.0% | |
| CTGAGACACGGGTAAGGATT+TGG | + | chr1_2:4894391-4894410 | None:intergenic | 50.0% | |
| AGGAGGAATGAAGAGGACGT+GGG | + | chr1_2:4894461-4894480 | None:intergenic | 50.0% | |
| GCAAGTGAGGAGGAATGAAG+AGG | + | chr1_2:4894468-4894487 | None:intergenic | 50.0% | |
| ATTCCTCCTCACTTGCCATC+TGG | - | chr1_2:4894472-4894491 | Msa0050860:intron | 50.0% | |
| GAATTGCCAGATGGCAAGTG+AGG | + | chr1_2:4894481-4894500 | None:intergenic | 50.0% | |
| TACGGATGGATACCCCAGTA+AGG | - | chr1_2:4894759-4894778 | Msa0050860:intron | 50.0% | |
| GGCATGCAGGCAAATGAAGA+TGG | - | chr1_2:4895222-4895241 | Msa0050860:intron | 50.0% | |
| ! | CTTTGGCCTTCCAAAGTCTG+AGG | + | chr1_2:4895858-4895877 | None:intergenic | 50.0% |
| TGTGTGTGTGTGTGTGTGTG+TGG | + | chr1_2:4895927-4895946 | None:intergenic | 50.0% | |
| CCTGTGGCATCATCGTAAAC+AGG | + | chr1_2:4896112-4896131 | None:intergenic | 50.0% | |
| CCTGTTTACGATGATGCCAC+AGG | - | chr1_2:4896109-4896128 | Msa0050860:CDS | 50.0% | |
| ! | TTTTCCCTCGGAAGAACCTG+TGG | + | chr1_2:4896128-4896147 | None:intergenic | 50.0% |
| !! | GGCTTTGTTGTAACACTCCC+TGG | + | chr1_2:4896326-4896345 | None:intergenic | 50.0% |
| GGTTCGGAATTGGCAGAGGA+TGG | + | chr1_2:4890434-4890453 | None:intergenic | 55.0% | |
| CAGGGGTTAGGGTTCGGAAT+TGG | + | chr1_2:4890444-4890463 | None:intergenic | 55.0% | |
| TGCACACAGGGGTTAGGGTT+CGG | + | chr1_2:4890450-4890469 | None:intergenic | 55.0% | |
| GAGGAAGTAGCAATGAGCGG+CGG | + | chr1_2:4890497-4890516 | None:intergenic | 55.0% | |
| TCCTCCGTTCGCCGTTGTAA+AGG | - | chr1_2:4890512-4890531 | Msa0050860:three_prime_UTR | 55.0% | |
| ACCTTTACAACGGCGAACGG+AGG | + | chr1_2:4890516-4890535 | None:intergenic | 55.0% | |
| !! | GGGTCTGGTTCGGTATGGTA+TGG | + | chr1_2:4891775-4891794 | None:intergenic | 55.0% |
| !! | AACACGGGTCTGGTTCGGTA+TGG | + | chr1_2:4891780-4891799 | None:intergenic | 55.0% |
| CCACCAATGAAACACGGGTC+TGG | + | chr1_2:4891790-4891809 | None:intergenic | 55.0% | |
| CCAGACCCGTGTTTCATTGG+TGG | - | chr1_2:4891787-4891806 | Msa0050860:CDS | 55.0% | |
| TCTACTTGGACCCCTCTGCT+AGG | - | chr1_2:4891822-4891841 | Msa0050860:CDS | 55.0% | |
| GCCAGATGTGGGGGACAAAA+AGG | + | chr1_2:4892875-4892894 | None:intergenic | 55.0% | |
| ACTAGTATAGAGAGGGGCGG+GGG | + | chr1_2:4892936-4892955 | None:intergenic | 55.0% | |
| CACTAGTATAGAGAGGGGCG+GGG | + | chr1_2:4892937-4892956 | None:intergenic | 55.0% | |
| GCACTAGTATAGAGAGGGGC+GGG | + | chr1_2:4892938-4892957 | None:intergenic | 55.0% | |
| GGCACTAGTATAGAGAGGGG+CGG | + | chr1_2:4892939-4892958 | None:intergenic | 55.0% | |
| CGGACTGTTTGTCAGTTCCC+TGG | - | chr1_2:4893407-4893426 | Msa0050860:intron | 55.0% | |
| TGTCAGTTCCCTGGACACCA+AGG | - | chr1_2:4893416-4893435 | Msa0050860:intron | 55.0% | |
| CAAAATGCTCGCCGTCCCAT+TGG | + | chr1_2:4893920-4893939 | None:intergenic | 55.0% | |
| ATCTACTTGAGCGCCACCTG+TGG | + | chr1_2:4893943-4893962 | None:intergenic | 55.0% | |
| ACTGGCTGAGACCTGCAGAA+AGG | + | chr1_2:4894070-4894089 | None:intergenic | 55.0% | |
| GAGGAGGAATGAAGAGGACG+TGG | + | chr1_2:4894462-4894481 | None:intergenic | 55.0% | |
| TTGCCAGATGGCAAGTGAGG+AGG | + | chr1_2:4894478-4894497 | None:intergenic | 55.0% | |
| TGTGTCAAGTTCAGCGGCGA+TGG | - | chr1_2:4895799-4895818 | Msa0050860:intron | 55.0% | |
| TGATGCCACAGGTTCTTCCG+AGG | - | chr1_2:4896120-4896139 | Msa0050860:intron | 55.0% | |
| GATGCCACAGGTTCTTCCGA+GGG | - | chr1_2:4896121-4896140 | Msa0050860:intron | 55.0% | |
| ! | TGGCAGAGGATGGTGCTAGC+CGG | + | chr1_2:4890424-4890443 | None:intergenic | 60.0% |
| GGTGGTGCACACAGGGGTTA+GGG | + | chr1_2:4890455-4890474 | None:intergenic | 60.0% | |
| ATTGGCGGTGGTGCACACAG+GGG | + | chr1_2:4890461-4890480 | None:intergenic | 60.0% | |
| GATTGGCGGTGGTGCACACA+GGG | + | chr1_2:4890462-4890481 | None:intergenic | 60.0% | |
| !! | GGTGAGCTGTGGTGGATTGG+CGG | + | chr1_2:4890476-4890495 | None:intergenic | 60.0% |
| TCGTCCTCAAGAGAAGGCGG+TGG | - | chr1_2:4890986-4891005 | Msa0050860:intron | 60.0% | |
| CTAGTATAGAGAGGGGCGGG+GGG | + | chr1_2:4892935-4892954 | None:intergenic | 60.0% | |
| !! | GCACAGCACCTTGGTGTCCA+GGG | + | chr1_2:4893427-4893446 | None:intergenic | 60.0% |
| !! | GGCCTGACAGCATCGACAGA+TGG | - | chr1_2:4893449-4893468 | Msa0050860:intron | 60.0% |
| GGCCATCTGTCGATGCTGTC+AGG | + | chr1_2:4893454-4893473 | None:intergenic | 60.0% | |
| ! | GACGGCGAGCATTTTGCCAC+AGG | - | chr1_2:4893924-4893943 | Msa0050860:intron | 60.0% |
| ! | GGCGAGCATTTTGCCACAGG+TGG | - | chr1_2:4893927-4893946 | Msa0050860:intron | 60.0% |
| GGCTGAGACCTGCAGAAAGG+AGG | + | chr1_2:4894067-4894086 | None:intergenic | 60.0% | |
| AGGAAAGCTCACAGTGCCCC+AGG | - | chr1_2:4896305-4896324 | Msa0050860:intron | 60.0% | |
| GGAAAGCTCACAGTGCCCCA+GGG | - | chr1_2:4896306-4896325 | Msa0050860:intron | 60.0% | |
| CGGTGGTGCACACAGGGGTT+AGG | + | chr1_2:4890456-4890475 | None:intergenic | 65.0% | |
| ! | GGATTGGCGGTGGTGCACAC+AGG | + | chr1_2:4890463-4890482 | None:intergenic | 65.0% |
| !! | GAGCTGTGGTGGATTGGCGG+TGG | + | chr1_2:4890473-4890492 | None:intergenic | 65.0% |
| !! | GGCGGTGAGCTGTGGTGGAT+TGG | + | chr1_2:4890479-4890498 | None:intergenic | 65.0% |
| CAATGAGCGGCGGTGAGCTG+TGG | + | chr1_2:4890487-4890506 | None:intergenic | 65.0% | |
| !! | CGCACAGCACCTTGGTGTCC+AGG | + | chr1_2:4893428-4893447 | None:intergenic | 65.0% |
| !! | GGACACCAAGGTGCTGTGCG+AGG | - | chr1_2:4893428-4893447 | Msa0050860:intron | 65.0% |
| TCAGGCCTCGCACAGCACCT+TGG | + | chr1_2:4893436-4893455 | None:intergenic | 65.0% | |
| TGAGCGGCGGTGAGCTGTGG+TGG | + | chr1_2:4890484-4890503 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4890352 | 4896737 | 4890352 | ID=Msa0050860;Name=Msa0050860 |
| chr1_2 | mRNA | 4890352 | 4896737 | 4890352 | ID=Msa0050860-mRNA-1;Parent=Msa0050860;Name=Msa0050860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=185|0.85|0.93|1|0.85|0.86|15|355|404 |
| chr1_2 | exon | 4890352 | 4890958 | 4890352 | ID=Msa0050860-mRNA-1:exon:1387;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4891192 | 4891297 | 4891192 | ID=Msa0050860-mRNA-1:exon:1386;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4891474 | 4891538 | 4891474 | ID=Msa0050860-mRNA-1:exon:1385;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4891627 | 4891687 | 4891627 | ID=Msa0050860-mRNA-1:exon:1384;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4891773 | 4891858 | 4891773 | ID=Msa0050860-mRNA-1:exon:1383;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4891988 | 4892041 | 4891988 | ID=Msa0050860-mRNA-1:exon:1382;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4892293 | 4892356 | 4892293 | ID=Msa0050860-mRNA-1:exon:1381;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4892916 | 4893011 | 4892916 | ID=Msa0050860-mRNA-1:exon:1380;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4893110 | 4893184 | 4893110 | ID=Msa0050860-mRNA-1:exon:1379;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4893585 | 4893683 | 4893585 | ID=Msa0050860-mRNA-1:exon:1378;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4894027 | 4894054 | 4894027 | ID=Msa0050860-mRNA-1:exon:1377;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4895852 | 4895924 | 4895852 | ID=Msa0050860-mRNA-1:exon:1376;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4896043 | 4896132 | 4896043 | ID=Msa0050860-mRNA-1:exon:1375;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4896252 | 4896320 | 4896252 | ID=Msa0050860-mRNA-1:exon:1374;Parent=Msa0050860-mRNA-1 |
| chr1_2 | exon | 4896556 | 4896737 | 4896556 | ID=Msa0050860-mRNA-1:exon:1373;Parent=Msa0050860-mRNA-1 |
| chr1_2 | five_prime_UTR | 4896556 | 4896737 | 4896556 | ID=Msa0050860-mRNA-1:five_prime_utr;Parent=Msa0050860-mRNA-1 |
| chr1_2 | five_prime_UTR | 4896318 | 4896320 | 4896318 | ID=Msa0050860-mRNA-1:five_prime_utr;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4896252 | 4896317 | 4896252 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4896043 | 4896132 | 4896043 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4895852 | 4895924 | 4895852 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4894027 | 4894054 | 4894027 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4893585 | 4893683 | 4893585 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4893110 | 4893184 | 4893110 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4892916 | 4893011 | 4892916 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4892293 | 4892356 | 4892293 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4891988 | 4892041 | 4891988 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4891773 | 4891858 | 4891773 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4891627 | 4891687 | 4891627 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4891474 | 4891538 | 4891474 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4891192 | 4891297 | 4891192 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | CDS | 4890707 | 4890958 | 4890707 | ID=Msa0050860-mRNA-1:cds;Parent=Msa0050860-mRNA-1 |
| chr1_2 | three_prime_UTR | 4890352 | 4890706 | 4890352 | ID=Msa0050860-mRNA-1:three_prime_utr;Parent=Msa0050860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
