AlfalfaGEDB | Msa0079590

M. sativa cultivar zhongmu-4 / Msa0079590

KEGG: K02974
GO: GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904
PFAM: PF01282.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079590	XP_003591024.1	100.000	137	0	0	1	137	1	137	2.18e-92	273

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079590	sp\|Q8LC83\|RS242_ARATH	87.121	132	17	0	1	132	1	132	4.08e-83	242

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079590	B7FMK4	100.000	137	0	0	1	137	1	137	1.04e-92	273

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003360	Msa0079590	0.822441	2.365635e-53	-8.615850e-47
Msa0027590	Msa0079590	0.800630	1.316720e-48	-8.615850e-47
Msa0040220	Msa0079590	0.806414	8.322605e-50	-8.615850e-47
Msa0042480	Msa0079590	0.991528	3.972263e-188	-8.615850e-47
Msa0050860	Msa0079590	0.853747	1.947949e-61	-8.615850e-47
Msa0072570	Msa0079590	0.830276	3.217795e-55	-8.615850e-47
Msa0075350	Msa0079590	0.812197	4.784768e-51	-8.615850e-47
Msa0079590	Msa0114570	0.829185	5.929853e-55	-8.615850e-47
Msa0079590	Msa0138890	0.803170	3.962010e-49	-8.615850e-47
Msa0079590	Msa0146580	0.806515	7.925177e-50	-8.615850e-47
Msa0079590	Msa0172930	0.835614	1.514155e-56	-8.615850e-47
Msa0079590	Msa0191450	0.829085	6.268576e-55	-8.615850e-47
Msa0079590	Msa0191550	0.810599	1.063906e-50	-8.615850e-47
Msa0079590	Msa0192750	0.821959	3.058799e-53	-8.615850e-47
Msa0079590	Msa0194940	0.825294	5.068939e-54	-8.615850e-47
Msa0079590	Msa0210360	0.826315	2.902744e-54	-8.615850e-47
Msa0079590	Msa0297830	0.851506	8.488977e-61	-8.615850e-47
Msa0079590	Msa0298870	0.830294	3.183781e-55	-8.615850e-47
Msa0079590	Msa0301220	0.824090	9.741996e-54	-8.615850e-47
Msa0079590	Msa0335840	0.852005	6.130121e-61	-8.615850e-47
Msa0079590	Msa0426090	0.857363	1.718063e-62	-8.615850e-47
Msa0079590	Msa0426250	0.820277	7.468594e-53	-8.615850e-47
Msa0079590	Msa0472480	0.860811	1.591883e-63	-8.615850e-47
Msa0079590	Msa0475810	0.825724	4.010372e-54	-8.615850e-47
Msa0079590	Msa0582320	0.818325	2.079581e-52	-8.615850e-47
Msa0079590	Msa0584030	0.829146	6.060557e-55	-8.615850e-47
Msa0079590	Msa0705800	0.819413	1.176884e-52	-8.615850e-47
Msa0079590	Msa0717380	0.830934	2.219763e-55	-8.615850e-47
Msa0079590	Msa0783630	0.821085	4.869091e-53	-8.615850e-47
Msa0079590	Msa0788380	0.831800	1.359656e-55	-8.615850e-47
Msa0079590	Msa0799830	0.819045	1.427179e-52	-8.615850e-47
Msa0079590	Msa0822580	0.805874	1.081438e-49	-8.615850e-47
Msa0079590	Msa0827380	0.826064	3.329937e-54	-8.615850e-47
Msa0079590	Msa0838070	0.835682	1.455308e-56	-8.615850e-47
Msa0079590	Msa0966670	0.805973	1.030583e-49	-8.615850e-47
Msa0079590	Msa1037290	0.862552	4.675632e-64	-8.615850e-47
Msa0079590	Msa1040160	0.820884	5.417994e-53	-8.615850e-47
Msa0079590	Msa1041680	0.872145	3.981977e-67	-8.615850e-47
Msa0079590	Msa1042100	0.850193	1.989648e-60	-8.615850e-47
Msa0079590	Msa1078870	0.810382	1.184916e-50	-8.615850e-47
Msa0079590	Msa1078980	0.821934	3.100165e-53	-8.615850e-47
Msa0079590	Msa1083370	0.818372	2.028321e-52	-8.615850e-47
Msa0079590	Msa1126520	0.843256	1.567429e-58	-8.615850e-47
Msa0079590	Msa1164150	0.854781	9.793607e-62	-8.615850e-47
Msa0079590	Msa1166570	0.873449	1.458446e-67	-8.615850e-47
Msa0079590	Msa1169180	0.810898	9.169379e-51	-8.615850e-47
Msa0079590	Msa1186030	0.807166	5.772668e-50	-8.615850e-47
Msa0079590	Msa1206240	0.825621	4.243006e-54	-8.615850e-47
Msa0079590	Msa1218170	0.824001	1.022430e-53	-8.615850e-47
Msa0079590	Msa1311400	0.848087	7.663870e-60	-8.615850e-47
Msa0079590	Msa1332250	0.825835	3.774730e-54	-8.615850e-47
Msa0079590	Msa1368920	0.861620	9.029077e-64	-8.615850e-47
Msa0079590	Msa1374240	0.813571	2.392391e-51	-8.615850e-47
Msa0079590	Msa1403910	0.802345	5.864202e-49	-8.615850e-47
Msa0079590	Msa1406080	0.837933	3.879421e-57	-8.615850e-47
Msa0079590	Msa1426120	0.819976	8.753175e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079590	MtrunA17_Chr1g0190961	100.000	137	0	0	1	137	1	137	2.00e-96	273
Msa0079590	MtrunA17_Chr7g0273831	85.401	137	19	1	1	137	1	136	4.90e-80	232

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079590	AT5G28060.1	87.121	132	17	0	1	132	1	132	4.14e-84	242
Msa0079590	AT3G04920.1	90.152	132	13	0	1	132	1	132	9.01e-77	224
Msa0079590	AT3G04920.2	85.437	103	14	1	1	102	1	103	7.60e-53	162

Find 50 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTGTTGGTCATGAACTTTC+TGG	0.100542	1_2:-57532639	None:intergenic
TTCAAGTTCAGAACTCATTT+TGG	0.214352	1_2:+57533176	Msa0079590:CDS
TTTAACAGAATTCTCAAAAT+TGG	0.248098	1_2:-57534583	None:intergenic
TTGGAAACATTTGCCCTTCC+AGG	0.258852	1_2:-57532950	None:intergenic
GGCGGCAAGTCCACTGGTTT+TGG	0.272758	1_2:+57533200	Msa0079590:CDS
ACCCTAACAAGTCTGTATTT+TGG	0.279167	1_2:-57533263	None:intergenic
TTGCTGTTGGTAGTTTCTTA+AGG	0.335656	1_2:+57534448	Msa0079590:three_prime_UTR
GAAACTCACGAATTGCTTCC+TGG	0.351970	1_2:-57532669	None:intergenic
AACCAAAATACAGACTTGTT+AGG	0.354436	1_2:+57533261	Msa0079590:CDS
CTAACAATCTACAATCAAAA+AGG	0.369954	1_2:-57534652	None:intergenic
AAATGAAGGAAAGAAAGAAC+AGG	0.391792	1_2:+57534228	Msa0079590:CDS
CTTGGCAGCATCACCAGCCT+TGG	0.412083	1_2:-57534372	None:intergenic
GCTGGTGATGCTGCCAAGGC+TGG	0.425056	1_2:+57534377	Msa0079590:CDS
GTCATTGATGTTCTTCATCC+TGG	0.431746	1_2:+57532932	Msa0079590:CDS
CAACACTATAACCATGTAAA+CGG	0.433061	1_2:-57534708	None:intergenic
AACAACAACAATGGCAGACA+AGG	0.443820	1_2:+57532601	Msa0079590:exon
TGCTTCAATTCTCTCATCTC+AGG	0.447361	1_2:+57532552	Msa0079590:five_prime_UTR
TTCTCAAAATTGGTCACTGC+TGG	0.474339	1_2:-57534573	None:intergenic
TTATTTCTTCTTGCCAGCCT+TGG	0.476966	1_2:-57534390	None:intergenic
TGCAAGCTTCTCCTTTAGCT+CGG	0.485383	1_2:-57533114	None:intergenic
TGACCAACAGGCTTCTCTCC+AGG	0.487847	1_2:+57532651	Msa0079590:CDS
CCAGAAAGTTCATGACCAAC+AGG	0.493715	1_2:+57532639	Msa0079590:CDS
GTAGAATGGACTTGATACTA+AGG	0.495750	1_2:+57534187	Msa0079590:intron
CAAGGCTGGTGATGCTGCCA+AGG	0.500785	1_2:+57534373	Msa0079590:CDS
TGGTGTGAAGGCCGAGCTAA+AGG	0.502934	1_2:+57533103	Msa0079590:intron
TTTGGAGGCGGCAAGTCCAC+TGG	0.503274	1_2:+57533194	Msa0079590:CDS
GCTCTATAGAACCGTTTACA+TGG	0.506580	1_2:+57534697	Msa0079590:three_prime_UTR
ACCAAAATACAGACTTGTTA+GGG	0.511637	1_2:+57533262	Msa0079590:CDS
GAAGATCCGTGGAGTTAAGA+AGG	0.518538	1_2:+57534256	Msa0079590:CDS
ATTGAAGCAGCTCTGAGAGT+TGG	0.523143	1_2:-57532538	None:intergenic
TCTCATCTCAGGTAGACAAC+CGG	0.528063	1_2:+57532563	Msa0079590:five_prime_UTR
CATGAACTTTCTGGTTCTGA+TGG	0.533482	1_2:-57532630	None:intergenic
GCTCTGAGAGTTGGAACGAA+GGG	0.534348	1_2:-57532529	None:intergenic
TGTTGTTGAGTTGCGGCCGC+CGG	0.540908	1_2:-57532582	None:intergenic
TTGATGTTCTTCATCCTGGA+AGG	0.545793	1_2:+57532936	Msa0079590:CDS
ATACTAAGGTTGAAAAGTCA+AGG	0.557383	1_2:+57534201	Msa0079590:CDS
TTTGGACAAGATCAAACAGT+TGG	0.560959	1_2:-57534767	None:intergenic
GCTTTACCTTCTTAACTCCA+CGG	0.569745	1_2:-57534262	None:intergenic
CTTTCTGGTTCTGATGGTAA+CGG	0.571013	1_2:-57532624	None:intergenic
TGCAAGGATTTACGATGTGA+AGG	0.571848	1_2:+57533133	Msa0079590:CDS
AAAGTCAAGGAAGCAAATGA+AGG	0.574321	1_2:+57534214	Msa0079590:CDS
AGCTAAAGGAGAAGCTTGCA+AGG	0.575032	1_2:+57533117	Msa0079590:CDS
CTTCCTGGAGAGAAGCCTGT+TGG	0.575264	1_2:-57532654	None:intergenic
TGATGTTCTTCATCCTGGAA+GGG	0.593002	1_2:+57532937	Msa0079590:CDS
AGCTCTGAGAGTTGGAACGA+AGG	0.595174	1_2:-57532530	None:intergenic
TGGAAGGGCAAATGTTTCCA+AGG	0.598113	1_2:+57532952	Msa0079590:CDS
AACAGGGCAAAGAAGATCCG+TGG	0.612698	1_2:+57534245	Msa0079590:CDS
ATAGATCAAACCAAAACCAG+TGG	0.662445	1_2:-57533210	None:intergenic
AATGAAGGAAAGAAAGAACA+GGG	0.674567	1_2:+57534229	Msa0079590:CDS
CATCTCAGGTAGACAACCGG+CGG	0.767907	1_2:+57532566	Msa0079590:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTATGTCGAATTATTTTT+AGG	+	chr1_2:57532873-57532892	Msa0079590:intron	15.0%
!!	CTTGAAAAAAATAAATGAAT+AGG	-	chr1_2:57533630-57533649	None:intergenic	15.0%
!!	AATGATTGAAATTAAATGTA+GGG	-	chr1_2:57533785-57533804	None:intergenic	15.0%
!!	AAATGATTGAAATTAAATGT+AGG	-	chr1_2:57533786-57533805	None:intergenic	15.0%
!!!	TATAATAGTTTTTTCTAGAA+TGG	+	chr1_2:57534485-57534504	Msa0079590:three_prime_UTR	15.0%
!!!	ATTTATGTCGAATTATTTTT+AGG	+	chr1_2:57532873-57532892	Msa0079590:intron	15.0%
!!	CTTGAAAAAAATAAATGAAT+AGG	-	chr1_2:57533630-57533649	None:intergenic	15.0%
!!	AATGATTGAAATTAAATGTA+GGG	-	chr1_2:57533785-57533804	None:intergenic	15.0%
!!	AAATGATTGAAATTAAATGT+AGG	-	chr1_2:57533786-57533805	None:intergenic	15.0%
!!!	TATAATAGTTTTTTCTAGAA+TGG	+	chr1_2:57534485-57534504	Msa0079590:three_prime_UTR	15.0%
!!	ATACAGATCTAATAAAGAAA+GGG	-	chr1_2:57532700-57532719	None:intergenic	20.0%
!!	TATACAGATCTAATAAAGAA+AGG	-	chr1_2:57532701-57532720	None:intergenic	20.0%
!!	TAGTATGATTAGAATTAGTA+TGG	+	chr1_2:57532847-57532866	Msa0079590:intron	20.0%
!!	CATCACACAATAAAAAAAAT+CGG	-	chr1_2:57532909-57532928	None:intergenic	20.0%
!!!	TTTTTTTTATTGTGTGATGA+AGG	+	chr1_2:57532910-57532929	Msa0079590:intron	20.0%
!!	ACAAATAAACCACAAAAAAA+AGG	-	chr1_2:57533335-57533354	None:intergenic	20.0%
!!	AAAAAACAAACAAATCCATT+TGG	-	chr1_2:57533469-57533488	None:intergenic	20.0%
!!!	AATGGATTTGTTTGTTTTTT+CGG	+	chr1_2:57533469-57533488	Msa0079590:intron	20.0%
!!!	TTTTCTTTTCTATTGTAGAA+TGG	+	chr1_2:57534173-57534192	Msa0079590:intron	20.0%
!!	TTTAACAGAATTCTCAAAAT+TGG	-	chr1_2:57534586-57534605	None:intergenic	20.0%
!!	ATACAGATCTAATAAAGAAA+GGG	-	chr1_2:57532700-57532719	None:intergenic	20.0%
!!	TATACAGATCTAATAAAGAA+AGG	-	chr1_2:57532701-57532720	None:intergenic	20.0%
!!	TAGTATGATTAGAATTAGTA+TGG	+	chr1_2:57532847-57532866	Msa0079590:intron	20.0%
!!	CATCACACAATAAAAAAAAT+CGG	-	chr1_2:57532909-57532928	None:intergenic	20.0%
!!!	TTTTTTTTATTGTGTGATGA+AGG	+	chr1_2:57532910-57532929	Msa0079590:intron	20.0%
!!	ACAAATAAACCACAAAAAAA+AGG	-	chr1_2:57533335-57533354	None:intergenic	20.0%
!!	AAAAAACAAACAAATCCATT+TGG	-	chr1_2:57533469-57533488	None:intergenic	20.0%
!!!	AATGGATTTGTTTGTTTTTT+CGG	+	chr1_2:57533469-57533488	Msa0079590:intron	20.0%
!!!	TTTTCTTTTCTATTGTAGAA+TGG	+	chr1_2:57534173-57534192	Msa0079590:intron	20.0%
!!	TTTAACAGAATTCTCAAAAT+TGG	-	chr1_2:57534586-57534605	None:intergenic	20.0%
!	GATACAAATAACAAATACCT+TGG	-	chr1_2:57532972-57532991	None:intergenic	25.0%
!	ATAAGCTATGAATGTTAGAT+AGG	+	chr1_2:57532994-57533013	Msa0079590:intron	25.0%
!	CTGAAACTTACGTTATATTA+TGG	+	chr1_2:57533044-57533063	Msa0079590:intron	25.0%
!	TACGTTATATTATGGTGTAT+TGG	+	chr1_2:57533052-57533071	Msa0079590:intron	25.0%
!!!	TTGTTTGTTTTTTCGGAATT+TGG	+	chr1_2:57533476-57533495	Msa0079590:intron	25.0%
!	ACTAAATTCACAAGTAAATG+AGG	-	chr1_2:57533596-57533615	None:intergenic	25.0%
!!	TATTTCTGTTAAATAGTTCC+TGG	+	chr1_2:57533716-57533735	Msa0079590:intron	25.0%
!	TAGTTTAGAGATAATTTAGC+TGG	+	chr1_2:57533854-57533873	Msa0079590:intron	25.0%
!!	CAAGAGAGTACATAATTATA+GGG	-	chr1_2:57533890-57533909	None:intergenic	25.0%
!!	TCAAGAGAGTACATAATTAT+AGG	-	chr1_2:57533891-57533910	None:intergenic	25.0%
!!!	GTCATTTTGTTATGATATCA+AGG	+	chr1_2:57534420-57534439	Msa0079590:three_prime_UTR	25.0%
!!!	AATAGTTTTTTCTAGAATGG+AGG	+	chr1_2:57534488-57534507	Msa0079590:three_prime_UTR	25.0%
!	CTAACAATCTACAATCAAAA+AGG	-	chr1_2:57534655-57534674	None:intergenic	25.0%
!	GATACAAATAACAAATACCT+TGG	-	chr1_2:57532972-57532991	None:intergenic	25.0%
!	ATAAGCTATGAATGTTAGAT+AGG	+	chr1_2:57532994-57533013	Msa0079590:intron	25.0%
!	CTGAAACTTACGTTATATTA+TGG	+	chr1_2:57533044-57533063	Msa0079590:intron	25.0%
!	TACGTTATATTATGGTGTAT+TGG	+	chr1_2:57533052-57533071	Msa0079590:intron	25.0%
!!!	TTGTTTGTTTTTTCGGAATT+TGG	+	chr1_2:57533476-57533495	Msa0079590:intron	25.0%
!	ACTAAATTCACAAGTAAATG+AGG	-	chr1_2:57533596-57533615	None:intergenic	25.0%
!!	TATTTCTGTTAAATAGTTCC+TGG	+	chr1_2:57533716-57533735	Msa0079590:intron	25.0%
!	TAGTTTAGAGATAATTTAGC+TGG	+	chr1_2:57533854-57533873	Msa0079590:intron	25.0%
!!	CAAGAGAGTACATAATTATA+GGG	-	chr1_2:57533890-57533909	None:intergenic	25.0%
!!	TCAAGAGAGTACATAATTAT+AGG	-	chr1_2:57533891-57533910	None:intergenic	25.0%
!!!	GTCATTTTGTTATGATATCA+AGG	+	chr1_2:57534420-57534439	Msa0079590:three_prime_UTR	25.0%
!!!	AATAGTTTTTTCTAGAATGG+AGG	+	chr1_2:57534488-57534507	Msa0079590:three_prime_UTR	25.0%
!	CTAACAATCTACAATCAAAA+AGG	-	chr1_2:57534655-57534674	None:intergenic	25.0%
	GATGATTTATATTGTCTCAG+AGG	+	chr1_2:57533021-57533040	Msa0079590:intron	30.0%
!!	GATTTATCGTTTGTTGTGTT+TGG	+	chr1_2:57533083-57533102	Msa0079590:intron	30.0%
	TGAACACAAAAACAGTGTTT+GGG	-	chr1_2:57533160-57533179	None:intergenic	30.0%
	TTGAACACAAAAACAGTGTT+TGG	-	chr1_2:57533161-57533180	None:intergenic	30.0%
!!	TTCAAGTTCAGAACTCATTT+TGG	+	chr1_2:57533176-57533195	Msa0079590:CDS	30.0%
!	AACCAAAATACAGACTTGTT+AGG	+	chr1_2:57533261-57533280	Msa0079590:CDS	30.0%
!!	ACCAAAATACAGACTTGTTA+GGG	+	chr1_2:57533262-57533281	Msa0079590:CDS	30.0%
!	GTTAATTCTGTCTTTTCTCT+TGG	+	chr1_2:57533288-57533307	Msa0079590:intron	30.0%
!	TGTCTTTTCTCTTGGATAAT+TGG	+	chr1_2:57533296-57533315	Msa0079590:intron	30.0%
!!!	GCTTTGTAACCTTTTTTTTG+TGG	+	chr1_2:57533323-57533342	Msa0079590:intron	30.0%
!!	TGATTTAGTTTGCTATTTCC+TGG	+	chr1_2:57533404-57533423	Msa0079590:intron	30.0%
	GATTGAAATTAAATGTAGGG+TGG	-	chr1_2:57533782-57533801	None:intergenic	30.0%
!	TTTGCTTGTAGTGTTGTTAT+TGG	+	chr1_2:57533990-57534009	Msa0079590:intron	30.0%
!!!	ACTTTTCTGAAATTTGCCAA+GGG	+	chr1_2:57534059-57534078	Msa0079590:intron	30.0%
	GATTCATCAACTACATTAAC+AGG	-	chr1_2:57534094-57534113	None:intergenic	30.0%
	ATACTAAGGTTGAAAAGTCA+AGG	+	chr1_2:57534201-57534220	Msa0079590:CDS	30.0%
	AAATGAAGGAAAGAAAGAAC+AGG	+	chr1_2:57534228-57534247	Msa0079590:CDS	30.0%
	AATGAAGGAAAGAAAGAACA+GGG	+	chr1_2:57534229-57534248	Msa0079590:CDS	30.0%
!!	TATCAAGGTTATTTTGCTGT+TGG	+	chr1_2:57534435-57534454	Msa0079590:three_prime_UTR	30.0%
	CAACACTATAACCATGTAAA+CGG	-	chr1_2:57534711-57534730	None:intergenic	30.0%
	GATGATTTATATTGTCTCAG+AGG	+	chr1_2:57533021-57533040	Msa0079590:intron	30.0%
!!	GATTTATCGTTTGTTGTGTT+TGG	+	chr1_2:57533083-57533102	Msa0079590:intron	30.0%
	TGAACACAAAAACAGTGTTT+GGG	-	chr1_2:57533160-57533179	None:intergenic	30.0%
	TTGAACACAAAAACAGTGTT+TGG	-	chr1_2:57533161-57533180	None:intergenic	30.0%
!!	TTCAAGTTCAGAACTCATTT+TGG	+	chr1_2:57533176-57533195	Msa0079590:CDS	30.0%
!	AACCAAAATACAGACTTGTT+AGG	+	chr1_2:57533261-57533280	Msa0079590:CDS	30.0%
!!	ACCAAAATACAGACTTGTTA+GGG	+	chr1_2:57533262-57533281	Msa0079590:CDS	30.0%
!	GTTAATTCTGTCTTTTCTCT+TGG	+	chr1_2:57533288-57533307	Msa0079590:intron	30.0%
!	TGTCTTTTCTCTTGGATAAT+TGG	+	chr1_2:57533296-57533315	Msa0079590:intron	30.0%
!!!	GCTTTGTAACCTTTTTTTTG+TGG	+	chr1_2:57533323-57533342	Msa0079590:intron	30.0%
!!	TGATTTAGTTTGCTATTTCC+TGG	+	chr1_2:57533404-57533423	Msa0079590:intron	30.0%
	GATTGAAATTAAATGTAGGG+TGG	-	chr1_2:57533782-57533801	None:intergenic	30.0%
!	TTTGCTTGTAGTGTTGTTAT+TGG	+	chr1_2:57533990-57534009	Msa0079590:intron	30.0%
!!!	ACTTTTCTGAAATTTGCCAA+GGG	+	chr1_2:57534059-57534078	Msa0079590:intron	30.0%
	GATTCATCAACTACATTAAC+AGG	-	chr1_2:57534094-57534113	None:intergenic	30.0%
	ATACTAAGGTTGAAAAGTCA+AGG	+	chr1_2:57534201-57534220	Msa0079590:CDS	30.0%
	AAATGAAGGAAAGAAAGAAC+AGG	+	chr1_2:57534228-57534247	Msa0079590:CDS	30.0%
	AATGAAGGAAAGAAAGAACA+GGG	+	chr1_2:57534229-57534248	Msa0079590:CDS	30.0%
!!	TATCAAGGTTATTTTGCTGT+TGG	+	chr1_2:57534435-57534454	Msa0079590:three_prime_UTR	30.0%
	CAACACTATAACCATGTAAA+CGG	-	chr1_2:57534711-57534730	None:intergenic	30.0%
!	TTGTTGTTGTTGTTGAGTTG+CGG	-	chr1_2:57532592-57532611	None:intergenic	35.0%
	CAACTCAACAACAACAACAA+TGG	+	chr1_2:57532592-57532611	Msa0079590:exon	35.0%
!	AAGTTCAGAACTCATTTTGG+AGG	+	chr1_2:57533179-57533198	Msa0079590:CDS	35.0%
	ATAGATCAAACCAAAACCAG+TGG	-	chr1_2:57533213-57533232	None:intergenic	35.0%
!	ACCCTAACAAGTCTGTATTT+TGG	-	chr1_2:57533266-57533285	None:intergenic	35.0%
	TTTCTCTTGGATAATTGGAC+TGG	+	chr1_2:57533301-57533320	Msa0079590:intron	35.0%
	CAACATCAATGTTAACAACC+AGG	-	chr1_2:57533425-57533444	None:intergenic	35.0%
	CTGGTTGTTAACATTGATGT+TGG	+	chr1_2:57533423-57533442	Msa0079590:intron	35.0%
!!	ACATCAGTGTTTTTGCCAAA+TGG	+	chr1_2:57533451-57533470	Msa0079590:intron	35.0%
!!!	TGCACTTCCTTTTGATTTGA+CGG	+	chr1_2:57533676-57533695	Msa0079590:intron	35.0%
!	CGTGTTTGTTAACAAGTGAA+GGG	+	chr1_2:57533751-57533770	Msa0079590:intron	35.0%
	TAGTTATTTGTATTGCCTGC+TGG	+	chr1_2:57534016-57534035	Msa0079590:intron	35.0%
	AGTTATTTGTATTGCCTGCT+GGG	+	chr1_2:57534017-57534036	Msa0079590:intron	35.0%
!!!	CACTTTTCTGAAATTTGCCA+AGG	+	chr1_2:57534058-57534077	Msa0079590:intron	35.0%
	CAACTACATTAACAGGCAAA+AGG	-	chr1_2:57534087-57534106	None:intergenic	35.0%
!	GTAGAATGGACTTGATACTA+AGG	+	chr1_2:57534187-57534206	Msa0079590:intron	35.0%
	AAAGTCAAGGAAGCAAATGA+AGG	+	chr1_2:57534214-57534233	Msa0079590:CDS	35.0%
!!	CATTGTATTTTTGCAGACCA+AGG	+	chr1_2:57534355-57534374	Msa0079590:intron	35.0%
!!	TTGCTGTTGGTAGTTTCTTA+AGG	+	chr1_2:57534448-57534467	Msa0079590:three_prime_UTR	35.0%
!	TTTGAGATCAACCAACTGTT+TGG	+	chr1_2:57534756-57534775	Msa0079590:three_prime_UTR	35.0%
!	TTGTTGTTGTTGTTGAGTTG+CGG	-	chr1_2:57532592-57532611	None:intergenic	35.0%
	CAACTCAACAACAACAACAA+TGG	+	chr1_2:57532592-57532611	Msa0079590:exon	35.0%
!	AAGTTCAGAACTCATTTTGG+AGG	+	chr1_2:57533179-57533198	Msa0079590:CDS	35.0%
	ATAGATCAAACCAAAACCAG+TGG	-	chr1_2:57533213-57533232	None:intergenic	35.0%
!	ACCCTAACAAGTCTGTATTT+TGG	-	chr1_2:57533266-57533285	None:intergenic	35.0%
	TTTCTCTTGGATAATTGGAC+TGG	+	chr1_2:57533301-57533320	Msa0079590:intron	35.0%
	CAACATCAATGTTAACAACC+AGG	-	chr1_2:57533425-57533444	None:intergenic	35.0%
	CTGGTTGTTAACATTGATGT+TGG	+	chr1_2:57533423-57533442	Msa0079590:intron	35.0%
!!	ACATCAGTGTTTTTGCCAAA+TGG	+	chr1_2:57533451-57533470	Msa0079590:intron	35.0%
!!!	TGCACTTCCTTTTGATTTGA+CGG	+	chr1_2:57533676-57533695	Msa0079590:intron	35.0%
!	CGTGTTTGTTAACAAGTGAA+GGG	+	chr1_2:57533751-57533770	Msa0079590:intron	35.0%
	TAGTTATTTGTATTGCCTGC+TGG	+	chr1_2:57534016-57534035	Msa0079590:intron	35.0%
	AGTTATTTGTATTGCCTGCT+GGG	+	chr1_2:57534017-57534036	Msa0079590:intron	35.0%
!!!	CACTTTTCTGAAATTTGCCA+AGG	+	chr1_2:57534058-57534077	Msa0079590:intron	35.0%
	CAACTACATTAACAGGCAAA+AGG	-	chr1_2:57534087-57534106	None:intergenic	35.0%
!	GTAGAATGGACTTGATACTA+AGG	+	chr1_2:57534187-57534206	Msa0079590:intron	35.0%
	AAAGTCAAGGAAGCAAATGA+AGG	+	chr1_2:57534214-57534233	Msa0079590:CDS	35.0%
!!	CATTGTATTTTTGCAGACCA+AGG	+	chr1_2:57534355-57534374	Msa0079590:intron	35.0%
!!	TTGCTGTTGGTAGTTTCTTA+AGG	+	chr1_2:57534448-57534467	Msa0079590:three_prime_UTR	35.0%
	TGCTTCAATTCTCTCATCTC+AGG	+	chr1_2:57532552-57532571	Msa0079590:five_prime_UTR	40.0%
	AACAACAACAATGGCAGACA+AGG	+	chr1_2:57532601-57532620	Msa0079590:exon	40.0%
!!	CTTTCTGGTTCTGATGGTAA+CGG	-	chr1_2:57532627-57532646	None:intergenic	40.0%
!!	CATGAACTTTCTGGTTCTGA+TGG	-	chr1_2:57532633-57532652	None:intergenic	40.0%
	GTCATTGATGTTCTTCATCC+TGG	+	chr1_2:57532932-57532951	Msa0079590:CDS	40.0%
	TTGATGTTCTTCATCCTGGA+AGG	+	chr1_2:57532936-57532955	Msa0079590:CDS	40.0%
	TGATGTTCTTCATCCTGGAA+GGG	+	chr1_2:57532937-57532956	Msa0079590:CDS	40.0%
!!	GTTTGTTGTGTTTGGTGTGA+AGG	+	chr1_2:57533091-57533110	Msa0079590:intron	40.0%
	TGCAAGGATTTACGATGTGA+AGG	+	chr1_2:57533133-57533152	Msa0079590:CDS	40.0%
!!	TTCAGAACTCATTTTGGAGG+CGG	+	chr1_2:57533182-57533201	Msa0079590:CDS	40.0%
	TGGCAAAAACACTGATGTTG+AGG	-	chr1_2:57533449-57533468	None:intergenic	40.0%
!!!	GCACTTCCTTTTGATTTGAC+GGG	+	chr1_2:57533677-57533696	Msa0079590:intron	40.0%
!	GCGTGTTTGTTAACAAGTGA+AGG	+	chr1_2:57533750-57533769	Msa0079590:intron	40.0%
	ACAAATTCAAACGTGAGCAC+TGG	-	chr1_2:57533923-57533942	None:intergenic	40.0%
	TCACGTTTGAATTTGTCCAG+TGG	+	chr1_2:57533927-57533946	Msa0079590:intron	40.0%
	GCTTTACCTTCTTAACTCCA+CGG	-	chr1_2:57534265-57534284	None:intergenic	40.0%
!	TTATTTCTTCTTGCCAGCCT+TGG	-	chr1_2:57534393-57534412	None:intergenic	40.0%
	TTCTCAAAATTGGTCACTGC+TGG	-	chr1_2:57534576-57534595	None:intergenic	40.0%
	GCTCTATAGAACCGTTTACA+TGG	+	chr1_2:57534697-57534716	Msa0079590:three_prime_UTR	40.0%
	TGCTTCAATTCTCTCATCTC+AGG	+	chr1_2:57532552-57532571	Msa0079590:five_prime_UTR	40.0%
	AACAACAACAATGGCAGACA+AGG	+	chr1_2:57532601-57532620	Msa0079590:exon	40.0%
!!	CTTTCTGGTTCTGATGGTAA+CGG	-	chr1_2:57532627-57532646	None:intergenic	40.0%
!!	CATGAACTTTCTGGTTCTGA+TGG	-	chr1_2:57532633-57532652	None:intergenic	40.0%
	GTCATTGATGTTCTTCATCC+TGG	+	chr1_2:57532932-57532951	Msa0079590:CDS	40.0%
	TTGATGTTCTTCATCCTGGA+AGG	+	chr1_2:57532936-57532955	Msa0079590:CDS	40.0%
	TGATGTTCTTCATCCTGGAA+GGG	+	chr1_2:57532937-57532956	Msa0079590:CDS	40.0%
!!	GTTTGTTGTGTTTGGTGTGA+AGG	+	chr1_2:57533091-57533110	Msa0079590:intron	40.0%
	TGCAAGGATTTACGATGTGA+AGG	+	chr1_2:57533133-57533152	Msa0079590:CDS	40.0%
!!	TTCAGAACTCATTTTGGAGG+CGG	+	chr1_2:57533182-57533201	Msa0079590:CDS	40.0%
	TGGCAAAAACACTGATGTTG+AGG	-	chr1_2:57533449-57533468	None:intergenic	40.0%
!!!	GCACTTCCTTTTGATTTGAC+GGG	+	chr1_2:57533677-57533696	Msa0079590:intron	40.0%
!	GCGTGTTTGTTAACAAGTGA+AGG	+	chr1_2:57533750-57533769	Msa0079590:intron	40.0%
	ACAAATTCAAACGTGAGCAC+TGG	-	chr1_2:57533923-57533942	None:intergenic	40.0%
	TCACGTTTGAATTTGTCCAG+TGG	+	chr1_2:57533927-57533946	Msa0079590:intron	40.0%
	GCTTTACCTTCTTAACTCCA+CGG	-	chr1_2:57534265-57534284	None:intergenic	40.0%
!	TTATTTCTTCTTGCCAGCCT+TGG	-	chr1_2:57534393-57534412	None:intergenic	40.0%
	TTCTCAAAATTGGTCACTGC+TGG	-	chr1_2:57534576-57534595	None:intergenic	40.0%
	GCTCTATAGAACCGTTTACA+TGG	+	chr1_2:57534697-57534716	Msa0079590:three_prime_UTR	40.0%
!!	ATTGAAGCAGCTCTGAGAGT+TGG	-	chr1_2:57532541-57532560	None:intergenic	45.0%
	TCTCATCTCAGGTAGACAAC+CGG	+	chr1_2:57532563-57532582	Msa0079590:five_prime_UTR	45.0%
	CCTGTTGGTCATGAACTTTC+TGG	-	chr1_2:57532642-57532661	None:intergenic	45.0%
	CCAGAAAGTTCATGACCAAC+AGG	+	chr1_2:57532639-57532658	Msa0079590:CDS	45.0%
	GAAACTCACGAATTGCTTCC+TGG	-	chr1_2:57532672-57532691	None:intergenic	45.0%
	TTGGAAACATTTGCCCTTCC+AGG	-	chr1_2:57532953-57532972	None:intergenic	45.0%
	TGGAAGGGCAAATGTTTCCA+AGG	+	chr1_2:57532952-57532971	Msa0079590:CDS	45.0%
	TGCAAGCTTCTCCTTTAGCT+CGG	-	chr1_2:57533117-57533136	None:intergenic	45.0%
	AGCTAAAGGAGAAGCTTGCA+AGG	+	chr1_2:57533117-57533136	Msa0079590:CDS	45.0%
	TACGCTCCCGTCAAATCAAA+AGG	-	chr1_2:57533686-57533705	None:intergenic	45.0%
!	TGATTTGACGGGAGCGTATT+TGG	+	chr1_2:57533688-57533707	Msa0079590:intron	45.0%
	AACACGCTTATAACAGCACC+AGG	-	chr1_2:57533737-57533756	None:intergenic	45.0%
	GAAGATCCGTGGAGTTAAGA+AGG	+	chr1_2:57534256-57534275	Msa0079590:CDS	45.0%
!!	GTATTTTTGCAGACCAAGGC+TGG	+	chr1_2:57534359-57534378	Msa0079590:intron	45.0%
!!	ATTGAAGCAGCTCTGAGAGT+TGG	-	chr1_2:57532541-57532560	None:intergenic	45.0%
	TCTCATCTCAGGTAGACAAC+CGG	+	chr1_2:57532563-57532582	Msa0079590:five_prime_UTR	45.0%
	CCTGTTGGTCATGAACTTTC+TGG	-	chr1_2:57532642-57532661	None:intergenic	45.0%
	CCAGAAAGTTCATGACCAAC+AGG	+	chr1_2:57532639-57532658	Msa0079590:CDS	45.0%
	GAAACTCACGAATTGCTTCC+TGG	-	chr1_2:57532672-57532691	None:intergenic	45.0%
	TTGGAAACATTTGCCCTTCC+AGG	-	chr1_2:57532953-57532972	None:intergenic	45.0%
	TGGAAGGGCAAATGTTTCCA+AGG	+	chr1_2:57532952-57532971	Msa0079590:CDS	45.0%
	TGCAAGCTTCTCCTTTAGCT+CGG	-	chr1_2:57533117-57533136	None:intergenic	45.0%
	AGCTAAAGGAGAAGCTTGCA+AGG	+	chr1_2:57533117-57533136	Msa0079590:CDS	45.0%
	TACGCTCCCGTCAAATCAAA+AGG	-	chr1_2:57533686-57533705	None:intergenic	45.0%
!	TGATTTGACGGGAGCGTATT+TGG	+	chr1_2:57533688-57533707	Msa0079590:intron	45.0%
	AACACGCTTATAACAGCACC+AGG	-	chr1_2:57533737-57533756	None:intergenic	45.0%
	GAAGATCCGTGGAGTTAAGA+AGG	+	chr1_2:57534256-57534275	Msa0079590:CDS	45.0%
!!	GTATTTTTGCAGACCAAGGC+TGG	+	chr1_2:57534359-57534378	Msa0079590:intron	45.0%
!!	GCTCTGAGAGTTGGAACGAA+GGG	-	chr1_2:57532532-57532551	None:intergenic	50.0%
!!	AGCTCTGAGAGTTGGAACGA+AGG	-	chr1_2:57532533-57532552	None:intergenic	50.0%
	ACTGACAGAACTGACACCAC+TGG	-	chr1_2:57533946-57533965	None:intergenic	50.0%
	AAGTAGAACATGTGCCCAGC+AGG	-	chr1_2:57534034-57534053	None:intergenic	50.0%
	TAACAGGCAAAAGGAGCCCT+TGG	-	chr1_2:57534078-57534097	None:intergenic	50.0%
	AACAGGGCAAAGAAGATCCG+TGG	+	chr1_2:57534245-57534264	Msa0079590:CDS	50.0%
!!	GCTCTGAGAGTTGGAACGAA+GGG	-	chr1_2:57532532-57532551	None:intergenic	50.0%
!!	AGCTCTGAGAGTTGGAACGA+AGG	-	chr1_2:57532533-57532552	None:intergenic	50.0%
	ACTGACAGAACTGACACCAC+TGG	-	chr1_2:57533946-57533965	None:intergenic	50.0%
	AAGTAGAACATGTGCCCAGC+AGG	-	chr1_2:57534034-57534053	None:intergenic	50.0%
	TAACAGGCAAAAGGAGCCCT+TGG	-	chr1_2:57534078-57534097	None:intergenic	50.0%
	AACAGGGCAAAGAAGATCCG+TGG	+	chr1_2:57534245-57534264	Msa0079590:CDS	50.0%
	CATCTCAGGTAGACAACCGG+CGG	+	chr1_2:57532566-57532585	Msa0079590:five_prime_UTR	55.0%
	TGACCAACAGGCTTCTCTCC+AGG	+	chr1_2:57532651-57532670	Msa0079590:CDS	55.0%
	CTTCCTGGAGAGAAGCCTGT+TGG	-	chr1_2:57532657-57532676	None:intergenic	55.0%
	TGGTGTGAAGGCCGAGCTAA+AGG	+	chr1_2:57533103-57533122	Msa0079590:intron	55.0%
	CATCTCAGGTAGACAACCGG+CGG	+	chr1_2:57532566-57532585	Msa0079590:five_prime_UTR	55.0%
	TGACCAACAGGCTTCTCTCC+AGG	+	chr1_2:57532651-57532670	Msa0079590:CDS	55.0%
	CTTCCTGGAGAGAAGCCTGT+TGG	-	chr1_2:57532657-57532676	None:intergenic	55.0%
	TGGTGTGAAGGCCGAGCTAA+AGG	+	chr1_2:57533103-57533122	Msa0079590:intron	55.0%
!	TGTTGTTGAGTTGCGGCCGC+CGG	-	chr1_2:57532585-57532604	None:intergenic	60.0%
	TTTGGAGGCGGCAAGTCCAC+TGG	+	chr1_2:57533194-57533213	Msa0079590:CDS	60.0%
!!!	GGCGGCAAGTCCACTGGTTT+TGG	+	chr1_2:57533200-57533219	Msa0079590:CDS	60.0%
	CTTGGCAGCATCACCAGCCT+TGG	-	chr1_2:57534375-57534394	None:intergenic	60.0%
!	CAAGGCTGGTGATGCTGCCA+AGG	+	chr1_2:57534373-57534392	Msa0079590:CDS	60.0%
!	TGTTGTTGAGTTGCGGCCGC+CGG	-	chr1_2:57532585-57532604	None:intergenic	60.0%
	TTTGGAGGCGGCAAGTCCAC+TGG	+	chr1_2:57533194-57533213	Msa0079590:CDS	60.0%
!!!	GGCGGCAAGTCCACTGGTTT+TGG	+	chr1_2:57533200-57533219	Msa0079590:CDS	60.0%
	CTTGGCAGCATCACCAGCCT+TGG	-	chr1_2:57534375-57534394	None:intergenic	60.0%
!	CAAGGCTGGTGATGCTGCCA+AGG	+	chr1_2:57534373-57534392	Msa0079590:CDS	60.0%
!	GCTGGTGATGCTGCCAAGGC+TGG	+	chr1_2:57534377-57534396	Msa0079590:CDS	65.0%
!	GCTGGTGATGCTGCCAAGGC+TGG	+	chr1_2:57534377-57534396	Msa0079590:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57532520	57534777	57532520	ID=Msa0079590;Name=Msa0079590
chr1_2	mRNA	57532520	57534777	57532520	ID=Msa0079590-mRNA-1;Parent=Msa0079590;Name=Msa0079590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91\|1\|1\|1\|1\|1\|5\|365\|137
chr1_2	exon	57532520	57532682	57532520	ID=Msa0079590-mRNA-1:exon:18218;Parent=Msa0079590-mRNA-1
chr1_2	exon	57532932	57532973	57532932	ID=Msa0079590-mRNA-1:exon:18219;Parent=Msa0079590-mRNA-1
chr1_2	exon	57533113	57533283	57533113	ID=Msa0079590-mRNA-1:exon:18220;Parent=Msa0079590-mRNA-1
chr1_2	exon	57534191	57534277	57534191	ID=Msa0079590-mRNA-1:exon:18221;Parent=Msa0079590-mRNA-1
chr1_2	exon	57534371	57534777	57534371	ID=Msa0079590-mRNA-1:exon:18222;Parent=Msa0079590-mRNA-1
chr1_2	five_prime_UTR	57532520	57532610	57532520	ID=Msa0079590-mRNA-1:five_prime_utr;Parent=Msa0079590-mRNA-1
chr1_2	CDS	57532611	57532682	57532611	ID=Msa0079590-mRNA-1:cds;Parent=Msa0079590-mRNA-1
chr1_2	CDS	57532932	57532973	57532932	ID=Msa0079590-mRNA-1:cds;Parent=Msa0079590-mRNA-1
chr1_2	CDS	57533113	57533283	57533113	ID=Msa0079590-mRNA-1:cds;Parent=Msa0079590-mRNA-1
chr1_2	CDS	57534191	57534277	57534191	ID=Msa0079590-mRNA-1:cds;Parent=Msa0079590-mRNA-1
chr1_2	CDS	57534371	57534412	57534371	ID=Msa0079590-mRNA-1:cds;Parent=Msa0079590-mRNA-1
chr1_2	three_prime_UTR	57534413	57534777	57534413	ID=Msa0079590-mRNA-1:three_prime_utr;Parent=Msa0079590-mRNA-1

Gene Sequence

>Msa0079590

ATGGCAGACAAGGCCGTTACCATCAGAACCAGAAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCATCCTGGAAGGGCAAATGTTTCCAAGGCCGAGCTAAAGGAGAAGCTTGCAAGGATTTACGATGTGAAGGACCCAAACACTGTTTTTGTGTTCAAGTTCAGAACTCATTTTGGAGGCGGCAAGTCCACTGGTTTTGGTTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTATGAACCAAAATACAGACTTGTTAGGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACAGGGCAAAGAAGATCCGTGGAGTTAAGAAGACCAAGGCTGGTGATGCTGCCAAGGCTGGCAAGAAGAAATAA

Protein sequence

>Msa0079590

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK*