AlfalfaGEDB | Msa0042480

M. sativa cultivar zhongmu-4 / Msa0042480

KEGG: K02974
GO: GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904
PFAM: PF01282.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0042480	sp\|Q8LC83\|RS242_ARATH	87.121	132	17	0	1	132	1	132	4.08e-83	242

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003360	Msa0042480	0.809704	1.659234e-50	-8.615850e-47
Msa0042480	Msa0050860	0.841000	6.195222e-58	-8.615850e-47
Msa0042480	Msa0072570	0.823467	1.363672e-53	-8.615850e-47
Msa0042480	Msa0075350	0.802736	4.869145e-49	-8.615850e-47
Msa0042480	Msa0079590	0.991528	3.972263e-188	-8.615850e-47
Msa0042480	Msa0114570	0.821011	5.064787e-53	-8.615850e-47
Msa0042480	Msa0116670	0.804906	1.724778e-49	-8.615850e-47
Msa0042480	Msa0138890	0.816935	4.277722e-52	-8.615850e-47
Msa0042480	Msa0172930	0.835311	1.806788e-56	-8.615850e-47
Msa0042480	Msa0173530	0.803224	3.861071e-49	-8.615850e-47
Msa0042480	Msa0191450	0.815930	7.180888e-52	-8.615850e-47
Msa0042480	Msa0192750	0.815977	7.010966e-52	-8.615850e-47
Msa0042480	Msa0194940	0.811437	7.005734e-51	-8.615850e-47
Msa0042480	Msa0210360	0.840957	6.357662e-58	-8.615850e-47
Msa0042480	Msa0265250	0.801319	9.521858e-49	-8.615850e-47
Msa0042480	Msa0297830	0.859898	3.007172e-63	-8.615850e-47
Msa0042480	Msa0298870	0.839190	1.837619e-57	-8.615850e-47
Msa0042480	Msa0301220	0.811983	5.327755e-51	-8.615850e-47
Msa0042480	Msa0335840	0.857899	1.191491e-62	-8.615850e-47
Msa0042480	Msa0426090	0.835089	2.055174e-56	-8.615850e-47
Msa0042480	Msa0463520	0.801516	8.679071e-49	-8.615850e-47
Msa0042480	Msa0472480	0.837975	3.785132e-57	-8.615850e-47
Msa0042480	Msa0475810	0.816521	5.298205e-52	-8.615850e-47
Msa0042480	Msa0582320	0.814104	1.825773e-51	-8.615850e-47
Msa0042480	Msa0584030	0.844529	7.146281e-59	-8.615850e-47
Msa0042480	Msa0705800	0.822267	2.595996e-53	-8.615850e-47
Msa0042480	Msa0717380	0.831517	1.595776e-55	-8.615850e-47
Msa0042480	Msa0781080	0.805063	1.599844e-49	-8.615850e-47
Msa0042480	Msa0783630	0.831972	1.232629e-55	-8.615850e-47
Msa0042480	Msa0786660	0.804813	1.803879e-49	-8.615850e-47
Msa0042480	Msa0788380	0.832959	7.016689e-56	-8.615850e-47
Msa0042480	Msa0799830	0.813506	2.473071e-51	-8.615850e-47
Msa0042480	Msa0827380	0.829764	4.288040e-55	-8.615850e-47
Msa0042480	Msa0838070	0.823210	1.565806e-53	-8.615850e-47
Msa0042480	Msa0966670	0.808311	3.296947e-50	-8.615850e-47
Msa0042480	Msa1037290	0.860212	2.418258e-63	-8.615850e-47
Msa0042480	Msa1040160	0.816058	6.726377e-52	-8.615850e-47
Msa0042480	Msa1041680	0.870956	9.858254e-67	-8.615850e-47
Msa0042480	Msa1042100	0.847336	1.233308e-59	-8.615850e-47
Msa0042480	Msa1078870	0.811372	7.234381e-51	-8.615850e-47
Msa0042480	Msa1078980	0.823383	1.427039e-53	-8.615850e-47
Msa0042480	Msa1083370	0.809870	1.528104e-50	-8.615850e-47
Msa0042480	Msa1089220	0.805557	1.260040e-49	-8.615850e-47
Msa0042480	Msa1126520	0.840562	8.071434e-58	-8.615850e-47
Msa0042480	Msa1164150	0.844475	7.390103e-59	-8.615850e-47
Msa0042480	Msa1166570	0.871601	6.036070e-67	-8.615850e-47
Msa0042480	Msa1169180	0.810221	1.283703e-50	-8.615850e-47
Msa0042480	Msa1218170	0.821973	3.036281e-53	-8.615850e-47
Msa0042480	Msa1311400	0.848397	6.292713e-60	-8.615850e-47
Msa0042480	Msa1332250	0.832070	1.165624e-55	-8.615850e-47
Msa0042480	Msa1368920	0.859259	4.679312e-63	-8.615850e-47
Msa0042480	Msa1374240	0.827511	1.502558e-54	-8.615850e-47
Msa0042480	Msa1392590	0.808249	3.398341e-50	-8.615850e-47
Msa0042480	Msa1403910	0.807376	5.209629e-50	-8.615850e-47
Msa0042480	Msa1406080	0.841016	6.134202e-58	-8.615850e-47
Msa0042480	Msa1418770	0.803998	2.667022e-49	-8.615850e-47
Msa0042480	Msa1426120	0.823335	1.464263e-53	-8.615850e-47
Msa0042480	Msa1426370	0.827066	1.920221e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0042480	MtrunA17_Chr1g0190961	100.000	137	0	0	1	137	1	137	2.00e-96	273
Msa0042480	MtrunA17_Chr7g0273831	85.401	137	19	1	1	137	1	136	4.90e-80	232

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0042480	AT5G28060.1	87.121	132	17	0	1	132	1	132	4.14e-84	242
Msa0042480	AT3G04920.1	90.152	132	13	0	1	132	1	132	9.01e-77	224
Msa0042480	AT3G04920.2	85.437	103	14	1	1	102	1	103	7.60e-53	162

Find 50 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTGTTGGTCATGAACTTTC+TGG	0.100542	1_1:+73337002	None:intergenic
TTCAAGTTCAGAACTCATTT+TGG	0.214352	1_1:-73336464	Msa0042480:CDS
TTTAACAGAATTCTCAAAAT+TGG	0.248098	1_1:+73335057	None:intergenic
TTGGAAACATTTGCCCTTCC+AGG	0.258852	1_1:+73336690	None:intergenic
GGCGGCAAGTCCACTGGTTT+TGG	0.272758	1_1:-73336440	Msa0042480:CDS
ACCCTAACAAGTCTGTATTT+TGG	0.279167	1_1:+73336377	None:intergenic
GAAACTCACGAATTGCTTCC+TGG	0.336108	1_1:+73336972	None:intergenic
AACCAAAATACAGACTTGTT+AGG	0.354436	1_1:-73336379	Msa0042480:CDS
CTAACAATCCACAATCAAAA+AGG	0.377651	1_1:+73334988	None:intergenic
AAATGAAGGAAAGAAAGAAC+AGG	0.391792	1_1:-73335412	Msa0042480:CDS
CTTGGCAGCATCACCAGCCT+TGG	0.412083	1_1:+73335268	None:intergenic
GCTGGTGATGCTGCCAAGGC+TGG	0.425056	1_1:-73335263	Msa0042480:CDS
GTCATTGATGTTCTTCATCC+TGG	0.431746	1_1:-73336708	Msa0042480:CDS
CAACACTATAACCATGTAAA+CGG	0.433061	1_1:+73334932	None:intergenic
AACAACAACAATGGCAGACA+AGG	0.443820	1_1:-73337040	Msa0042480:exon
TGCTTCAATTCTCTCATCTC+AGG	0.447361	1_1:-73337089	Msa0042480:five_prime_UTR
TTGCTGTTGGTAGTTTCTGA+AGG	0.466164	1_1:-73335192	Msa0042480:three_prime_UTR
TTCTCAAAATTGGTCACTGC+TGG	0.474339	1_1:+73335067	None:intergenic
TTATTTCTTCTTGCCAGCCT+TGG	0.476966	1_1:+73335250	None:intergenic
TGCAAGCTTCTCCTTTAGCT+CGG	0.485383	1_1:+73336526	None:intergenic
TGACCAACAGGCTTCTCTCC+AGG	0.487847	1_1:-73336990	Msa0042480:CDS
CCAGAAAGTTCATGACCAAC+AGG	0.493715	1_1:-73337002	Msa0042480:CDS
GTAGAATGGACTTGATACTA+AGG	0.495750	1_1:-73335453	Msa0042480:intron
CAAGGCTGGTGATGCTGCCA+AGG	0.500785	1_1:-73335267	Msa0042480:CDS
TGGTGTGAAGGCCGAGCTAA+AGG	0.502934	1_1:-73336537	Msa0042480:intron
TTTGGAGGCGGCAAGTCCAC+TGG	0.503274	1_1:-73336446	Msa0042480:CDS
ACCAAAATACAGACTTGTTA+GGG	0.511637	1_1:-73336378	Msa0042480:intron
GAAGATCCGTGGAGTTAAGA+AGG	0.518538	1_1:-73335384	Msa0042480:intron
ATTGAAGCAGCTCTGAGAGT+TGG	0.523143	1_1:+73337103	None:intergenic
GCTCTGTAGAACCGTTTACA+TGG	0.523340	1_1:-73334943	Msa0042480:three_prime_UTR
TCTCATCTCAGGTAGACAAC+CGG	0.528063	1_1:-73337078	Msa0042480:five_prime_UTR
CATGAACTTTCTGGTTCTGA+TGG	0.533482	1_1:+73337011	None:intergenic
GCTCTGAGAGTTGGAACGAA+GGG	0.534348	1_1:+73337112	None:intergenic
TGTTGTTGAGTTGCGGCCGC+CGG	0.540908	1_1:+73337059	None:intergenic
TTGATGTTCTTCATCCTGGA+AGG	0.545793	1_1:-73336704	Msa0042480:CDS
ATACTAAGGTTGAAAAGTCA+AGG	0.557383	1_1:-73335439	Msa0042480:CDS
TTTGGACAAGATCAAACAGT+TGG	0.560959	1_1:+73334873	None:intergenic
GCTTTACCTTCTTAACTCCA+CGG	0.569745	1_1:+73335378	None:intergenic
CTTTCTGGTTCTGATGGTAA+CGG	0.571013	1_1:+73337017	None:intergenic
TGCAAGGATTTACGATGTGA+AGG	0.571848	1_1:-73336507	Msa0042480:CDS
AAAGTCAAGGAAGCAAATGA+AGG	0.574321	1_1:-73335426	Msa0042480:CDS
AGCTAAAGGAGAAGCTTGCA+AGG	0.575032	1_1:-73336523	Msa0042480:CDS
CTTCCTGGAGAGAAGCCTGT+TGG	0.575264	1_1:+73336987	None:intergenic
TGATGTTCTTCATCCTGGAA+GGG	0.593002	1_1:-73336703	Msa0042480:CDS
AGCTCTGAGAGTTGGAACGA+AGG	0.595174	1_1:+73337111	None:intergenic
TGGAAGGGCAAATGTTTCCA+AGG	0.598113	1_1:-73336688	Msa0042480:intron
AACAGGGCAAAGAAGATCCG+TGG	0.612698	1_1:-73335395	Msa0042480:CDS
ATAGATCAAACCAAAACCAG+TGG	0.662445	1_1:+73336430	None:intergenic
AATGAAGGAAAGAAAGAACA+GGG	0.674567	1_1:-73335411	Msa0042480:CDS
CATCTCAGGTAGACAACCGG+CGG	0.767907	1_1:-73337075	Msa0042480:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTATGTCGAATTATTTTT+AGG	-	chr1_1:73335239-73335258	Msa0042480:exon	15.0%
!!	AAAAAAAAAACAAATCCATT+TGG	+	chr1_1:73335835-73335854	None:intergenic	15.0%
!!!	AATGGATTTGTTTTTTTTTT+CGG	-	chr1_1:73335835-73335854	Msa0042480:intron	15.0%
!!	CTTGAAAAAAATAAATGAAT+AGG	+	chr1_1:73335996-73336015	None:intergenic	15.0%
!!	AATGATTGAAATTAAATGTA+GGG	+	chr1_1:73336151-73336170	None:intergenic	15.0%
!!	AAATGATTGAAATTAAATGT+AGG	+	chr1_1:73336152-73336171	None:intergenic	15.0%
!!!	TATAATAGTTTTTTCTAGAA+TGG	-	chr1_1:73336851-73336870	Msa0042480:intron	15.0%
!!!	ATTTATGTCGAATTATTTTT+AGG	-	chr1_1:73335239-73335258	Msa0042480:exon	15.0%
!!	AAAAAAAAAACAAATCCATT+TGG	+	chr1_1:73335835-73335854	None:intergenic	15.0%
!!!	AATGGATTTGTTTTTTTTTT+CGG	-	chr1_1:73335835-73335854	Msa0042480:intron	15.0%
!!	CTTGAAAAAAATAAATGAAT+AGG	+	chr1_1:73335996-73336015	None:intergenic	15.0%
!!	AATGATTGAAATTAAATGTA+GGG	+	chr1_1:73336151-73336170	None:intergenic	15.0%
!!	AAATGATTGAAATTAAATGT+AGG	+	chr1_1:73336152-73336171	None:intergenic	15.0%
!!!	TATAATAGTTTTTTCTAGAA+TGG	-	chr1_1:73336851-73336870	Msa0042480:intron	15.0%
!!	ATACAGATCTAATAAAGAAA+GGG	+	chr1_1:73335066-73335085	None:intergenic	20.0%
!!	TATACAGATCTAATAAAGAA+AGG	+	chr1_1:73335067-73335086	None:intergenic	20.0%
!!	TAGTATGATTAGAATTAGTA+TGG	-	chr1_1:73335213-73335232	Msa0042480:three_prime_UTR	20.0%
!!	CATCACACAATAAAAAAAAT+CGG	+	chr1_1:73335275-73335294	None:intergenic	20.0%
!!!	TTTTTTTTATTGTGTGATGA+AGG	-	chr1_1:73335276-73335295	Msa0042480:intron	20.0%
!!	ACAAATAAACCACAAAAAAA+AGG	+	chr1_1:73335701-73335720	None:intergenic	20.0%
!!!	TTGTTTTTTTTTTCGGAATT+TGG	-	chr1_1:73335842-73335861	Msa0042480:intron	20.0%
!!!	TTTTCTTTTCTATTGTAGAA+TGG	-	chr1_1:73336539-73336558	Msa0042480:intron	20.0%
!!	TTTAACAGAATTCTCAAAAT+TGG	+	chr1_1:73336952-73336971	None:intergenic	20.0%
!!	ATACAGATCTAATAAAGAAA+GGG	+	chr1_1:73335066-73335085	None:intergenic	20.0%
!!	TATACAGATCTAATAAAGAA+AGG	+	chr1_1:73335067-73335086	None:intergenic	20.0%
!!	TAGTATGATTAGAATTAGTA+TGG	-	chr1_1:73335213-73335232	Msa0042480:three_prime_UTR	20.0%
!!	CATCACACAATAAAAAAAAT+CGG	+	chr1_1:73335275-73335294	None:intergenic	20.0%
!!!	TTTTTTTTATTGTGTGATGA+AGG	-	chr1_1:73335276-73335295	Msa0042480:intron	20.0%
!!	ACAAATAAACCACAAAAAAA+AGG	+	chr1_1:73335701-73335720	None:intergenic	20.0%
!!!	TTGTTTTTTTTTTCGGAATT+TGG	-	chr1_1:73335842-73335861	Msa0042480:intron	20.0%
!!!	TTTTCTTTTCTATTGTAGAA+TGG	-	chr1_1:73336539-73336558	Msa0042480:intron	20.0%
!!	TTTAACAGAATTCTCAAAAT+TGG	+	chr1_1:73336952-73336971	None:intergenic	20.0%
!	GATACAAATAACAAATACCT+TGG	+	chr1_1:73335338-73335357	None:intergenic	25.0%
!	ATATGCTATGAATGTTAGAT+AGG	-	chr1_1:73335360-73335379	Msa0042480:intron	25.0%
!	CTGAAACTTACGTTATATTA+TGG	-	chr1_1:73335410-73335429	Msa0042480:CDS	25.0%
!	TACGTTATATTATGGTGTAT+TGG	-	chr1_1:73335418-73335437	Msa0042480:CDS	25.0%
!!	TATTTCTGTTAAATAGTTCC+TGG	-	chr1_1:73336082-73336101	Msa0042480:intron	25.0%
!	TAGTTTAGAGATAATTTAGC+TGG	-	chr1_1:73336220-73336239	Msa0042480:intron	25.0%
!!	CAAGAGAGTACATAATTATA+GGG	+	chr1_1:73336256-73336275	None:intergenic	25.0%
!!	TCAAGAGAGTACATAATTAT+AGG	+	chr1_1:73336257-73336276	None:intergenic	25.0%
!!!	GTCATTTTGTTATGATATCA+AGG	-	chr1_1:73336786-73336805	Msa0042480:intron	25.0%
!!!	AATAGTTTTTTCTAGAATGG+AGG	-	chr1_1:73336854-73336873	Msa0042480:intron	25.0%
!	GATACAAATAACAAATACCT+TGG	+	chr1_1:73335338-73335357	None:intergenic	25.0%
!	ATATGCTATGAATGTTAGAT+AGG	-	chr1_1:73335360-73335379	Msa0042480:intron	25.0%
!	CTGAAACTTACGTTATATTA+TGG	-	chr1_1:73335410-73335429	Msa0042480:CDS	25.0%
!	TACGTTATATTATGGTGTAT+TGG	-	chr1_1:73335418-73335437	Msa0042480:CDS	25.0%
!!	TATTTCTGTTAAATAGTTCC+TGG	-	chr1_1:73336082-73336101	Msa0042480:intron	25.0%
!	TAGTTTAGAGATAATTTAGC+TGG	-	chr1_1:73336220-73336239	Msa0042480:intron	25.0%
!!	CAAGAGAGTACATAATTATA+GGG	+	chr1_1:73336256-73336275	None:intergenic	25.0%
!!	TCAAGAGAGTACATAATTAT+AGG	+	chr1_1:73336257-73336276	None:intergenic	25.0%
!!!	GTCATTTTGTTATGATATCA+AGG	-	chr1_1:73336786-73336805	Msa0042480:intron	25.0%
!!!	AATAGTTTTTTCTAGAATGG+AGG	-	chr1_1:73336854-73336873	Msa0042480:intron	25.0%
	TCTAATAAAGAAAGGGAAGA+AGG	+	chr1_1:73335059-73335078	None:intergenic	30.0%
	GATGATTTATATTGTCTCAG+AGG	-	chr1_1:73335387-73335406	Msa0042480:CDS	30.0%
!!	GATTTATCGTTTGTTGTGTT+TGG	-	chr1_1:73335449-73335468	Msa0042480:CDS	30.0%
	TGAACACAAAAACAGTGTTT+GGG	+	chr1_1:73335526-73335545	None:intergenic	30.0%
	TTGAACACAAAAACAGTGTT+TGG	+	chr1_1:73335527-73335546	None:intergenic	30.0%
!!	TTCAAGTTCAGAACTCATTT+TGG	-	chr1_1:73335542-73335561	Msa0042480:intron	30.0%
!	AACCAAAATACAGACTTGTT+AGG	-	chr1_1:73335627-73335646	Msa0042480:intron	30.0%
!!	ACCAAAATACAGACTTGTTA+GGG	-	chr1_1:73335628-73335647	Msa0042480:intron	30.0%
!	GTTAATTCTGTCTTTTCTCT+TGG	-	chr1_1:73335654-73335673	Msa0042480:intron	30.0%
!	TGTCTTTTCTCTTGGATAAT+TGG	-	chr1_1:73335662-73335681	Msa0042480:intron	30.0%
!!!	GCTTTGTAACCTTTTTTTTG+TGG	-	chr1_1:73335689-73335708	Msa0042480:intron	30.0%
!!	TGATTTAGTTTGCTATTTCC+TGG	-	chr1_1:73335770-73335789	Msa0042480:intron	30.0%
	ACTAAATTCACAAGCAAATG+AGG	+	chr1_1:73335962-73335981	None:intergenic	30.0%
!	TGTGTTTGTTAACAAGTGAA+GGG	-	chr1_1:73336117-73336136	Msa0042480:intron	30.0%
	GATTGAAATTAAATGTAGGG+TGG	+	chr1_1:73336148-73336167	None:intergenic	30.0%
!	TTTGCTTGTAGTGTTGTTAT+TGG	-	chr1_1:73336356-73336375	Msa0042480:intron	30.0%
!!!	ACTTTTCTGAAATTTGCCAA+GGG	-	chr1_1:73336425-73336444	Msa0042480:CDS	30.0%
	GATTCATCAACTACATTAAC+AGG	+	chr1_1:73336460-73336479	None:intergenic	30.0%
	ATACTAAGGTTGAAAAGTCA+AGG	-	chr1_1:73336567-73336586	Msa0042480:intron	30.0%
	AAATGAAGGAAAGAAAGAAC+AGG	-	chr1_1:73336594-73336613	Msa0042480:intron	30.0%
	AATGAAGGAAAGAAAGAACA+GGG	-	chr1_1:73336595-73336614	Msa0042480:intron	30.0%
!!	TATCAAGGTTATTTTGCTGT+TGG	-	chr1_1:73336801-73336820	Msa0042480:intron	30.0%
!!	CTTAATCTCCTTTTTGATTG+TGG	-	chr1_1:73337010-73337029	Msa0042480:CDS	30.0%
	CTAACAATCCACAATCAAAA+AGG	+	chr1_1:73337021-73337040	None:intergenic	30.0%
	CAACACTATAACCATGTAAA+CGG	+	chr1_1:73337077-73337096	None:intergenic	30.0%
	TCTAATAAAGAAAGGGAAGA+AGG	+	chr1_1:73335059-73335078	None:intergenic	30.0%
	GATGATTTATATTGTCTCAG+AGG	-	chr1_1:73335387-73335406	Msa0042480:CDS	30.0%
!!	GATTTATCGTTTGTTGTGTT+TGG	-	chr1_1:73335449-73335468	Msa0042480:CDS	30.0%
	TGAACACAAAAACAGTGTTT+GGG	+	chr1_1:73335526-73335545	None:intergenic	30.0%
	TTGAACACAAAAACAGTGTT+TGG	+	chr1_1:73335527-73335546	None:intergenic	30.0%
!!	TTCAAGTTCAGAACTCATTT+TGG	-	chr1_1:73335542-73335561	Msa0042480:intron	30.0%
!	AACCAAAATACAGACTTGTT+AGG	-	chr1_1:73335627-73335646	Msa0042480:intron	30.0%
!!	ACCAAAATACAGACTTGTTA+GGG	-	chr1_1:73335628-73335647	Msa0042480:intron	30.0%
!	GTTAATTCTGTCTTTTCTCT+TGG	-	chr1_1:73335654-73335673	Msa0042480:intron	30.0%
!	TGTCTTTTCTCTTGGATAAT+TGG	-	chr1_1:73335662-73335681	Msa0042480:intron	30.0%
!!!	GCTTTGTAACCTTTTTTTTG+TGG	-	chr1_1:73335689-73335708	Msa0042480:intron	30.0%
!!	TGATTTAGTTTGCTATTTCC+TGG	-	chr1_1:73335770-73335789	Msa0042480:intron	30.0%
	ACTAAATTCACAAGCAAATG+AGG	+	chr1_1:73335962-73335981	None:intergenic	30.0%
!	TGTGTTTGTTAACAAGTGAA+GGG	-	chr1_1:73336117-73336136	Msa0042480:intron	30.0%
	GATTGAAATTAAATGTAGGG+TGG	+	chr1_1:73336148-73336167	None:intergenic	30.0%
!	TTTGCTTGTAGTGTTGTTAT+TGG	-	chr1_1:73336356-73336375	Msa0042480:intron	30.0%
!!!	ACTTTTCTGAAATTTGCCAA+GGG	-	chr1_1:73336425-73336444	Msa0042480:CDS	30.0%
	GATTCATCAACTACATTAAC+AGG	+	chr1_1:73336460-73336479	None:intergenic	30.0%
	ATACTAAGGTTGAAAAGTCA+AGG	-	chr1_1:73336567-73336586	Msa0042480:intron	30.0%
	AAATGAAGGAAAGAAAGAAC+AGG	-	chr1_1:73336594-73336613	Msa0042480:intron	30.0%
	AATGAAGGAAAGAAAGAACA+GGG	-	chr1_1:73336595-73336614	Msa0042480:intron	30.0%
!!	TATCAAGGTTATTTTGCTGT+TGG	-	chr1_1:73336801-73336820	Msa0042480:intron	30.0%
!!	CTTAATCTCCTTTTTGATTG+TGG	-	chr1_1:73337010-73337029	Msa0042480:CDS	30.0%
	CTAACAATCCACAATCAAAA+AGG	+	chr1_1:73337021-73337040	None:intergenic	30.0%
	CAACACTATAACCATGTAAA+CGG	+	chr1_1:73337077-73337096	None:intergenic	30.0%
!	TTGTTGTTGTTGTTGAGTTG+CGG	+	chr1_1:73334957-73334976	None:intergenic	35.0%
	CAACTCAACAACAACAACAA+TGG	-	chr1_1:73334957-73334976	Msa0042480:three_prime_UTR	35.0%
!	AAGTTCAGAACTCATTTTGG+AGG	-	chr1_1:73335545-73335564	Msa0042480:intron	35.0%
	ATAGATCAAACCAAAACCAG+TGG	+	chr1_1:73335579-73335598	None:intergenic	35.0%
!	ACCCTAACAAGTCTGTATTT+TGG	+	chr1_1:73335632-73335651	None:intergenic	35.0%
	TTTCTCTTGGATAATTGGAC+TGG	-	chr1_1:73335667-73335686	Msa0042480:intron	35.0%
	CAACATCAATGTTAACAACC+AGG	+	chr1_1:73335791-73335810	None:intergenic	35.0%
	CTGGTTGTTAACATTGATGT+TGG	-	chr1_1:73335789-73335808	Msa0042480:intron	35.0%
!!	ACATCAGTGTTTTTGCCAAA+TGG	-	chr1_1:73335817-73335836	Msa0042480:intron	35.0%
!!!	TGCACTTCCTTTTGATTTGA+CGG	-	chr1_1:73336042-73336061	Msa0042480:intron	35.0%
!	GTGTGTTTGTTAACAAGTGA+AGG	-	chr1_1:73336116-73336135	Msa0042480:intron	35.0%
	TAGTTATTTGTATTGCCTGC+TGG	-	chr1_1:73336382-73336401	Msa0042480:CDS	35.0%
	AGTTATTTGTATTGCCTGCT+GGG	-	chr1_1:73336383-73336402	Msa0042480:CDS	35.0%
!!!	CACTTTTCTGAAATTTGCCA+AGG	-	chr1_1:73336424-73336443	Msa0042480:CDS	35.0%
	CAACTACATTAACAGGCAAA+AGG	+	chr1_1:73336453-73336472	None:intergenic	35.0%
!	GTAGAATGGACTTGATACTA+AGG	-	chr1_1:73336553-73336572	Msa0042480:intron	35.0%
	AAAGTCAAGGAAGCAAATGA+AGG	-	chr1_1:73336580-73336599	Msa0042480:intron	35.0%
!!	CATTGTATTTTTGCAGACCA+AGG	-	chr1_1:73336721-73336740	Msa0042480:intron	35.0%
!	TTTGAGATCAACCAACTGTT+TGG	-	chr1_1:73337122-73337141	Msa0042480:five_prime_UTR	35.0%
!	TTGTTGTTGTTGTTGAGTTG+CGG	+	chr1_1:73334957-73334976	None:intergenic	35.0%
	CAACTCAACAACAACAACAA+TGG	-	chr1_1:73334957-73334976	Msa0042480:three_prime_UTR	35.0%
!	AAGTTCAGAACTCATTTTGG+AGG	-	chr1_1:73335545-73335564	Msa0042480:intron	35.0%
	ATAGATCAAACCAAAACCAG+TGG	+	chr1_1:73335579-73335598	None:intergenic	35.0%
!	ACCCTAACAAGTCTGTATTT+TGG	+	chr1_1:73335632-73335651	None:intergenic	35.0%
	TTTCTCTTGGATAATTGGAC+TGG	-	chr1_1:73335667-73335686	Msa0042480:intron	35.0%
	CAACATCAATGTTAACAACC+AGG	+	chr1_1:73335791-73335810	None:intergenic	35.0%
	CTGGTTGTTAACATTGATGT+TGG	-	chr1_1:73335789-73335808	Msa0042480:intron	35.0%
!!	ACATCAGTGTTTTTGCCAAA+TGG	-	chr1_1:73335817-73335836	Msa0042480:intron	35.0%
!!!	TGCACTTCCTTTTGATTTGA+CGG	-	chr1_1:73336042-73336061	Msa0042480:intron	35.0%
!	GTGTGTTTGTTAACAAGTGA+AGG	-	chr1_1:73336116-73336135	Msa0042480:intron	35.0%
	TAGTTATTTGTATTGCCTGC+TGG	-	chr1_1:73336382-73336401	Msa0042480:CDS	35.0%
	AGTTATTTGTATTGCCTGCT+GGG	-	chr1_1:73336383-73336402	Msa0042480:CDS	35.0%
!!!	CACTTTTCTGAAATTTGCCA+AGG	-	chr1_1:73336424-73336443	Msa0042480:CDS	35.0%
	CAACTACATTAACAGGCAAA+AGG	+	chr1_1:73336453-73336472	None:intergenic	35.0%
!	GTAGAATGGACTTGATACTA+AGG	-	chr1_1:73336553-73336572	Msa0042480:intron	35.0%
	AAAGTCAAGGAAGCAAATGA+AGG	-	chr1_1:73336580-73336599	Msa0042480:intron	35.0%
!!	CATTGTATTTTTGCAGACCA+AGG	-	chr1_1:73336721-73336740	Msa0042480:intron	35.0%
	TGCTTCAATTCTCTCATCTC+AGG	-	chr1_1:73334917-73334936	Msa0042480:three_prime_UTR	40.0%
	AACAACAACAATGGCAGACA+AGG	-	chr1_1:73334966-73334985	Msa0042480:three_prime_UTR	40.0%
!!	CTTTCTGGTTCTGATGGTAA+CGG	+	chr1_1:73334992-73335011	None:intergenic	40.0%
!!	CATGAACTTTCTGGTTCTGA+TGG	+	chr1_1:73334998-73335017	None:intergenic	40.0%
	GTCATTGATGTTCTTCATCC+TGG	-	chr1_1:73335298-73335317	Msa0042480:intron	40.0%
	TTGATGTTCTTCATCCTGGA+AGG	-	chr1_1:73335302-73335321	Msa0042480:intron	40.0%
	TGATGTTCTTCATCCTGGAA+GGG	-	chr1_1:73335303-73335322	Msa0042480:intron	40.0%
!!	GTTTGTTGTGTTTGGTGTGA+AGG	-	chr1_1:73335457-73335476	Msa0042480:intron	40.0%
	TGCAAGGATTTACGATGTGA+AGG	-	chr1_1:73335499-73335518	Msa0042480:intron	40.0%
!!	TTCAGAACTCATTTTGGAGG+CGG	-	chr1_1:73335548-73335567	Msa0042480:intron	40.0%
	TGGCAAAAACACTGATGTTG+AGG	+	chr1_1:73335815-73335834	None:intergenic	40.0%
!	GGAAGTGCAAAGTCAAACAT+CGG	+	chr1_1:73336031-73336050	None:intergenic	40.0%
!!!	GCACTTCCTTTTGATTTGAC+GGG	-	chr1_1:73336043-73336062	Msa0042480:intron	40.0%
	AACACACTTATAACAGCACC+AGG	+	chr1_1:73336103-73336122	None:intergenic	40.0%
	ACAAATTCAAACGTGAGCAC+TGG	+	chr1_1:73336289-73336308	None:intergenic	40.0%
	TCACGTTTGAATTTGTCCAG+TGG	-	chr1_1:73336293-73336312	Msa0042480:intron	40.0%
	GCTTTACCTTCTTAACTCCA+CGG	+	chr1_1:73336631-73336650	None:intergenic	40.0%
!	TTATTTCTTCTTGCCAGCCT+TGG	+	chr1_1:73336759-73336778	None:intergenic	40.0%
!!	TTGCTGTTGGTAGTTTCTGA+AGG	-	chr1_1:73336814-73336833	Msa0042480:intron	40.0%
	TTCTCAAAATTGGTCACTGC+TGG	+	chr1_1:73336942-73336961	None:intergenic	40.0%
	TGCTTCAATTCTCTCATCTC+AGG	-	chr1_1:73334917-73334936	Msa0042480:three_prime_UTR	40.0%
	AACAACAACAATGGCAGACA+AGG	-	chr1_1:73334966-73334985	Msa0042480:three_prime_UTR	40.0%
!!	CTTTCTGGTTCTGATGGTAA+CGG	+	chr1_1:73334992-73335011	None:intergenic	40.0%
!!	CATGAACTTTCTGGTTCTGA+TGG	+	chr1_1:73334998-73335017	None:intergenic	40.0%
	GTCATTGATGTTCTTCATCC+TGG	-	chr1_1:73335298-73335317	Msa0042480:intron	40.0%
	TTGATGTTCTTCATCCTGGA+AGG	-	chr1_1:73335302-73335321	Msa0042480:intron	40.0%
	TGATGTTCTTCATCCTGGAA+GGG	-	chr1_1:73335303-73335322	Msa0042480:intron	40.0%
!!	GTTTGTTGTGTTTGGTGTGA+AGG	-	chr1_1:73335457-73335476	Msa0042480:intron	40.0%
	TGCAAGGATTTACGATGTGA+AGG	-	chr1_1:73335499-73335518	Msa0042480:intron	40.0%
!!	TTCAGAACTCATTTTGGAGG+CGG	-	chr1_1:73335548-73335567	Msa0042480:intron	40.0%
	TGGCAAAAACACTGATGTTG+AGG	+	chr1_1:73335815-73335834	None:intergenic	40.0%
!	GGAAGTGCAAAGTCAAACAT+CGG	+	chr1_1:73336031-73336050	None:intergenic	40.0%
!!!	GCACTTCCTTTTGATTTGAC+GGG	-	chr1_1:73336043-73336062	Msa0042480:intron	40.0%
	AACACACTTATAACAGCACC+AGG	+	chr1_1:73336103-73336122	None:intergenic	40.0%
	ACAAATTCAAACGTGAGCAC+TGG	+	chr1_1:73336289-73336308	None:intergenic	40.0%
	TCACGTTTGAATTTGTCCAG+TGG	-	chr1_1:73336293-73336312	Msa0042480:intron	40.0%
	GCTTTACCTTCTTAACTCCA+CGG	+	chr1_1:73336631-73336650	None:intergenic	40.0%
!	TTATTTCTTCTTGCCAGCCT+TGG	+	chr1_1:73336759-73336778	None:intergenic	40.0%
!!	TTGCTGTTGGTAGTTTCTGA+AGG	-	chr1_1:73336814-73336833	Msa0042480:intron	40.0%
	TTCTCAAAATTGGTCACTGC+TGG	+	chr1_1:73336942-73336961	None:intergenic	40.0%
!!	ATTGAAGCAGCTCTGAGAGT+TGG	+	chr1_1:73334906-73334925	None:intergenic	45.0%
	TCTCATCTCAGGTAGACAAC+CGG	-	chr1_1:73334928-73334947	Msa0042480:three_prime_UTR	45.0%
	CCTGTTGGTCATGAACTTTC+TGG	+	chr1_1:73335007-73335026	None:intergenic	45.0%
	CCAGAAAGTTCATGACCAAC+AGG	-	chr1_1:73335004-73335023	Msa0042480:three_prime_UTR	45.0%
	GAAACTCACGAATTGCTTCC+TGG	+	chr1_1:73335037-73335056	None:intergenic	45.0%
	TTGGAAACATTTGCCCTTCC+AGG	+	chr1_1:73335319-73335338	None:intergenic	45.0%
	TGGAAGGGCAAATGTTTCCA+AGG	-	chr1_1:73335318-73335337	Msa0042480:intron	45.0%
	TGCAAGCTTCTCCTTTAGCT+CGG	+	chr1_1:73335483-73335502	None:intergenic	45.0%
	AGCTAAAGGAGAAGCTTGCA+AGG	-	chr1_1:73335483-73335502	Msa0042480:intron	45.0%
	TACGCTCCCGTCAAATCAAA+AGG	+	chr1_1:73336052-73336071	None:intergenic	45.0%
!	TGATTTGACGGGAGCGTATT+TGG	-	chr1_1:73336054-73336073	Msa0042480:intron	45.0%
	GAAGATCCGTGGAGTTAAGA+AGG	-	chr1_1:73336622-73336641	Msa0042480:intron	45.0%
!!	GTATTTTTGCAGACCAAGGC+TGG	-	chr1_1:73336725-73336744	Msa0042480:intron	45.0%
	GCTCTGTAGAACCGTTTACA+TGG	-	chr1_1:73337063-73337082	Msa0042480:five_prime_UTR	45.0%
!!	ATTGAAGCAGCTCTGAGAGT+TGG	+	chr1_1:73334906-73334925	None:intergenic	45.0%
	TCTCATCTCAGGTAGACAAC+CGG	-	chr1_1:73334928-73334947	Msa0042480:three_prime_UTR	45.0%
	CCTGTTGGTCATGAACTTTC+TGG	+	chr1_1:73335007-73335026	None:intergenic	45.0%
	CCAGAAAGTTCATGACCAAC+AGG	-	chr1_1:73335004-73335023	Msa0042480:three_prime_UTR	45.0%
	GAAACTCACGAATTGCTTCC+TGG	+	chr1_1:73335037-73335056	None:intergenic	45.0%
	TTGGAAACATTTGCCCTTCC+AGG	+	chr1_1:73335319-73335338	None:intergenic	45.0%
	TGGAAGGGCAAATGTTTCCA+AGG	-	chr1_1:73335318-73335337	Msa0042480:intron	45.0%
	TGCAAGCTTCTCCTTTAGCT+CGG	+	chr1_1:73335483-73335502	None:intergenic	45.0%
	AGCTAAAGGAGAAGCTTGCA+AGG	-	chr1_1:73335483-73335502	Msa0042480:intron	45.0%
	TACGCTCCCGTCAAATCAAA+AGG	+	chr1_1:73336052-73336071	None:intergenic	45.0%
!	TGATTTGACGGGAGCGTATT+TGG	-	chr1_1:73336054-73336073	Msa0042480:intron	45.0%
	GAAGATCCGTGGAGTTAAGA+AGG	-	chr1_1:73336622-73336641	Msa0042480:intron	45.0%
!!	GTATTTTTGCAGACCAAGGC+TGG	-	chr1_1:73336725-73336744	Msa0042480:intron	45.0%
	GCTCTGTAGAACCGTTTACA+TGG	-	chr1_1:73337063-73337082	Msa0042480:five_prime_UTR	45.0%
!!	GCTCTGAGAGTTGGAACGAA+GGG	+	chr1_1:73334897-73334916	None:intergenic	50.0%
!!	AGCTCTGAGAGTTGGAACGA+AGG	+	chr1_1:73334898-73334917	None:intergenic	50.0%
	ACTGACAGAACTGACACCAC+TGG	+	chr1_1:73336312-73336331	None:intergenic	50.0%
	AAGTAGAACATGTGCCCAGC+AGG	+	chr1_1:73336400-73336419	None:intergenic	50.0%
	TAACAGGCAAAAGGAGCCCT+TGG	+	chr1_1:73336444-73336463	None:intergenic	50.0%
	AACAGGGCAAAGAAGATCCG+TGG	-	chr1_1:73336611-73336630	Msa0042480:intron	50.0%
!!	GCTCTGAGAGTTGGAACGAA+GGG	+	chr1_1:73334897-73334916	None:intergenic	50.0%
!!	AGCTCTGAGAGTTGGAACGA+AGG	+	chr1_1:73334898-73334917	None:intergenic	50.0%
	ACTGACAGAACTGACACCAC+TGG	+	chr1_1:73336312-73336331	None:intergenic	50.0%
	AAGTAGAACATGTGCCCAGC+AGG	+	chr1_1:73336400-73336419	None:intergenic	50.0%
	TAACAGGCAAAAGGAGCCCT+TGG	+	chr1_1:73336444-73336463	None:intergenic	50.0%
	AACAGGGCAAAGAAGATCCG+TGG	-	chr1_1:73336611-73336630	Msa0042480:intron	50.0%
	CATCTCAGGTAGACAACCGG+CGG	-	chr1_1:73334931-73334950	Msa0042480:three_prime_UTR	55.0%
	TGACCAACAGGCTTCTCTCC+AGG	-	chr1_1:73335016-73335035	Msa0042480:three_prime_UTR	55.0%
	CTTCCTGGAGAGAAGCCTGT+TGG	+	chr1_1:73335022-73335041	None:intergenic	55.0%
	TGGTGTGAAGGCCGAGCTAA+AGG	-	chr1_1:73335469-73335488	Msa0042480:intron	55.0%
	CATCTCAGGTAGACAACCGG+CGG	-	chr1_1:73334931-73334950	Msa0042480:three_prime_UTR	55.0%
	TGACCAACAGGCTTCTCTCC+AGG	-	chr1_1:73335016-73335035	Msa0042480:three_prime_UTR	55.0%
	CTTCCTGGAGAGAAGCCTGT+TGG	+	chr1_1:73335022-73335041	None:intergenic	55.0%
	TGGTGTGAAGGCCGAGCTAA+AGG	-	chr1_1:73335469-73335488	Msa0042480:intron	55.0%
!	TGTTGTTGAGTTGCGGCCGC+CGG	+	chr1_1:73334950-73334969	None:intergenic	60.0%
	TTTGGAGGCGGCAAGTCCAC+TGG	-	chr1_1:73335560-73335579	Msa0042480:intron	60.0%
!!!	GGCGGCAAGTCCACTGGTTT+TGG	-	chr1_1:73335566-73335585	Msa0042480:intron	60.0%
	CTTGGCAGCATCACCAGCCT+TGG	+	chr1_1:73336741-73336760	None:intergenic	60.0%
!	CAAGGCTGGTGATGCTGCCA+AGG	-	chr1_1:73336739-73336758	Msa0042480:intron	60.0%
!	TGTTGTTGAGTTGCGGCCGC+CGG	+	chr1_1:73334950-73334969	None:intergenic	60.0%
	TTTGGAGGCGGCAAGTCCAC+TGG	-	chr1_1:73335560-73335579	Msa0042480:intron	60.0%
!!!	GGCGGCAAGTCCACTGGTTT+TGG	-	chr1_1:73335566-73335585	Msa0042480:intron	60.0%
	CTTGGCAGCATCACCAGCCT+TGG	+	chr1_1:73336741-73336760	None:intergenic	60.0%
!	CAAGGCTGGTGATGCTGCCA+AGG	-	chr1_1:73336739-73336758	Msa0042480:intron	60.0%
!	GCTGGTGATGCTGCCAAGGC+TGG	-	chr1_1:73336743-73336762	Msa0042480:intron	65.0%
!	GCTGGTGATGCTGCCAAGGC+TGG	-	chr1_1:73336743-73336762	Msa0042480:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	73334885	73337143	73334885	ID=Msa0042480;Name=Msa0042480
chr1_1	mRNA	73334885	73337143	73334885	ID=Msa0042480-mRNA-1;Parent=Msa0042480;Name=Msa0042480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91\|1\|1\|1\|1\|1\|5\|365\|137
chr1_1	exon	73334885	73335291	73334885	ID=Msa0042480-mRNA-1:exon:24563;Parent=Msa0042480-mRNA-1
chr1_1	exon	73335385	73335471	73335385	ID=Msa0042480-mRNA-1:exon:24562;Parent=Msa0042480-mRNA-1
chr1_1	exon	73336379	73336549	73336379	ID=Msa0042480-mRNA-1:exon:24561;Parent=Msa0042480-mRNA-1
chr1_1	exon	73336689	73336730	73336689	ID=Msa0042480-mRNA-1:exon:24560;Parent=Msa0042480-mRNA-1
chr1_1	exon	73336981	73337143	73336981	ID=Msa0042480-mRNA-1:exon:24559;Parent=Msa0042480-mRNA-1
chr1_1	five_prime_UTR	73337053	73337143	73337053	ID=Msa0042480-mRNA-1:five_prime_utr;Parent=Msa0042480-mRNA-1
chr1_1	CDS	73336981	73337052	73336981	ID=Msa0042480-mRNA-1:cds;Parent=Msa0042480-mRNA-1
chr1_1	CDS	73336689	73336730	73336689	ID=Msa0042480-mRNA-1:cds;Parent=Msa0042480-mRNA-1
chr1_1	CDS	73336379	73336549	73336379	ID=Msa0042480-mRNA-1:cds;Parent=Msa0042480-mRNA-1
chr1_1	CDS	73335385	73335471	73335385	ID=Msa0042480-mRNA-1:cds;Parent=Msa0042480-mRNA-1
chr1_1	CDS	73335250	73335291	73335250	ID=Msa0042480-mRNA-1:cds;Parent=Msa0042480-mRNA-1
chr1_1	three_prime_UTR	73334885	73335249	73334885	ID=Msa0042480-mRNA-1:three_prime_utr;Parent=Msa0042480-mRNA-1

Gene Sequence

>Msa0042480

ATGGCAGACAAGGCCGTTACCATCAGAACCAGAAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCATCCTGGAAGGGCAAATGTTTCCAAGGCCGAGCTAAAGGAGAAGCTTGCAAGGATTTACGATGTGAAGGACCCAAACACTGTTTTTGTGTTCAAGTTCAGAACTCATTTTGGAGGCGGCAAGTCCACTGGTTTTGGTTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTATGAACCAAAATACAGACTTGTTAGGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACAGGGCAAAGAAGATCCGTGGAGTTAAGAAGACCAAGGCTGGTGATGCTGCCAAGGCTGGCAAGAAGAAATAA

Protein sequence

>Msa0042480

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK*