Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003360 | sp|Q5ZLK1|DCA13_CHICK | 45.618 | 445 | 201 | 2 | 1 | 404 | 1 | 445 | 2.03e-146 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003360 | Msa0027590 | 0.800568 | 1.356230e-48 | -8.615850e-47 |
| Msa0003360 | Msa0040220 | 0.810011 | 1.424912e-50 | -8.615850e-47 |
| Msa0003360 | Msa0042480 | 0.809704 | 1.659234e-50 | -8.615850e-47 |
| Msa0003360 | Msa0050860 | 0.931070 | 6.497232e-94 | -8.615850e-47 |
| Msa0003360 | Msa0079590 | 0.822441 | 2.365635e-53 | -8.615850e-47 |
| Msa0003360 | Msa0134580 | 0.802209 | 6.254758e-49 | -8.615850e-47 |
| Msa0003360 | Msa0146580 | 0.925318 | 2.158356e-90 | -8.615850e-47 |
| Msa0003360 | Msa0191450 | 0.807595 | 4.680695e-50 | -8.615850e-47 |
| Msa0003360 | Msa0191550 | 0.804196 | 2.426007e-49 | -8.615850e-47 |
| Msa0003360 | Msa0426090 | 0.831875 | 1.302505e-55 | -8.615850e-47 |
| Msa0003360 | Msa0426250 | 0.803549 | 3.306644e-49 | -8.615850e-47 |
| Msa0003360 | Msa0472480 | 0.835589 | 1.536543e-56 | -8.615850e-47 |
| Msa0003360 | Msa0475810 | 0.826629 | 2.442105e-54 | -8.615850e-47 |
| Msa0003360 | Msa0582070 | 0.805464 | 1.318050e-49 | -8.615850e-47 |
| Msa0003360 | Msa1037290 | 0.810217 | 1.286114e-50 | -8.615850e-47 |
| Msa0003360 | Msa1040160 | 0.803377 | 3.588309e-49 | -8.615850e-47 |
| Msa0003360 | Msa1041680 | 0.829210 | 5.847010e-55 | -8.615850e-47 |
| Msa0003360 | Msa1083370 | 0.816015 | 6.876114e-52 | -8.615850e-47 |
| Msa0003360 | Msa1166570 | 0.834185 | 3.469015e-56 | -8.615850e-47 |
| Msa0003360 | Msa1227080 | 0.927671 | 8.493112e-92 | -8.615850e-47 |
| Msa0003360 | Msa1368920 | 0.811372 | 7.234381e-51 | -8.615850e-47 |
| Msa0003360 | Msa1449160 | 0.804071 | 2.575348e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003360 | MtrunA17_Chr1g0155601 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
| Msa0003360 | MtrunA17_Chr1g0185501 | 24.206 | 252 | 147 | 9 | 95 | 311 | 26 | 268 | 7.16e-13 | 68.9 |
| Msa0003360 | MtrunA17_Chr4g0067151 | 22.553 | 235 | 146 | 6 | 91 | 315 | 73 | 281 | 3.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003360 | AT4G28450.1 | 71.460 | 452 | 81 | 2 | 1 | 404 | 1 | 452 | 0.0 | 680 |
| Msa0003360 | AT4G02730.1 | 24.221 | 289 | 168 | 11 | 56 | 319 | 31 | 293 | 2.74e-15 | 77.0 |
| Msa0003360 | AT2G22040.1 | 25.940 | 266 | 148 | 10 | 73 | 318 | 58 | 294 | 3.44e-11 | 64.3 |
| Msa0003360 | AT3G49660.1 | 20.332 | 241 | 156 | 7 | 89 | 319 | 64 | 278 | 4.37e-11 | 63.9 |
| Msa0003360 | AT3G49660.1 | 24.454 | 229 | 151 | 6 | 95 | 319 | 23 | 233 | 4.53e-11 | 63.9 |
Find 127 sgRNAs with CRISPR-Local
Find 431 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACCACTGTAAAATTTA+TGG | 0.088636 | 1_1:-5877869 | None:intergenic |
| GAAATTGAAAAGAAAGATTT+AGG | 0.137973 | 1_1:+5879452 | Msa0003360:three_prime_UTR |
| TAGTTATGATTCCAGGAAAT+TGG | 0.212222 | 1_1:+5878038 | Msa0003360:CDS |
| GTGCCTGTAGCGTTTCTTTA+TGG | 0.227292 | 1_1:-5878953 | None:intergenic |
| CGGTGGTGCACACAGGGGTT+AGG | 0.235953 | 1_1:-5873186 | None:intergenic |
| CTGCTGTGACCACCATTATA+AGG | 0.244087 | 1_1:-5878347 | None:intergenic |
| CTTACCACTGTAAAATTTAT+GGG | 0.253800 | 1_1:-5877868 | None:intergenic |
| TGTGCCAATGCAAGAAATTT+TGG | 0.255111 | 1_1:+5879324 | Msa0003360:three_prime_UTR |
| TCCAAGTTGTTCTGATGCTT+TGG | 0.306051 | 1_1:-5878656 | None:intergenic |
| CCATCCATTGCTCCTATAAA+AGG | 0.319195 | 1_1:-5873912 | None:intergenic |
| GATGGAAGTTATGTAATTTC+AGG | 0.319874 | 1_1:+5878601 | Msa0003360:CDS |
| TTTGGCTTCACCCAATTTCC+TGG | 0.320487 | 1_1:-5878049 | None:intergenic |
| CCCCATACAAAACTATTTAC+TGG | 0.321342 | 1_1:-5876819 | None:intergenic |
| CCAAGCTATAGAATTGGTTT+TGG | 0.322631 | 1_1:-5877833 | None:intergenic |
| TGGGCTTGCTCTCTATGTTT+AGG | 0.331401 | 1_1:-5873083 | None:intergenic |
| TGTTTGCAGATATTCGTCTT+TGG | 0.331813 | 1_1:+5875761 | Msa0003360:intron |
| GCTGAGCTTGCTAAGAGATT+TGG | 0.339438 | 1_1:-5876882 | None:intergenic |
| GTTTGCAGATATTCGTCTTT+GGG | 0.344881 | 1_1:+5875762 | Msa0003360:intron |
| TTCTCTTGAGGACGAAGAAT+TGG | 0.350486 | 1_1:-5873711 | None:intergenic |
| GGCTTTGTTGTAACACTCCC+TGG | 0.358324 | 1_1:-5879105 | None:intergenic |
| GTGATCTTTATGAACACATT+TGG | 0.359886 | 1_1:-5878067 | None:intergenic |
| GTGGCGCTCAAGTAGATATA+TGG | 0.375359 | 1_1:+5876680 | Msa0003360:CDS |
| AGAACGAAGCCAAGACCTTC+AGG | 0.381853 | 1_1:+5873549 | Msa0003360:CDS |
| CGCACAGCACCTTGGTGTCC+AGG | 0.391819 | 1_1:-5876160 | None:intergenic |
| AAATTGAAAAGAAAGATTTA+GGG | 0.397767 | 1_1:+5879453 | Msa0003360:three_prime_UTR |
| TACACCAAAATTTCTTGCAT+TGG | 0.399910 | 1_1:-5879328 | None:intergenic |
| AAAGAAGAAGCCTTGTATAT+TGG | 0.402396 | 1_1:-5879021 | None:intergenic |
| GCATAAATCTGTATGATTTA+CGG | 0.406292 | 1_1:+5877525 | Msa0003360:CDS |
| TGGATTCCAAGCTATAGAAT+TGG | 0.408247 | 1_1:-5877839 | None:intergenic |
| GTAAAATTTATGGGTTCCAT+TGG | 0.408971 | 1_1:-5877859 | None:intergenic |
| GCTAAGAGATTTGGTTCTCC+TGG | 0.410192 | 1_1:-5876873 | None:intergenic |
| CAGGGGTTAGGGTTCGGAAT+TGG | 0.410437 | 1_1:-5873174 | None:intergenic |
| ACTGCTATAGTTATGATTCC+AGG | 0.417229 | 1_1:+5878031 | Msa0003360:CDS |
| ATGATACTAACCTCAGACTT+TGG | 0.421940 | 1_1:+5878629 | Msa0003360:CDS |
| GAAGAATTGGATCGTAATTA+CGG | 0.423302 | 1_1:-5873698 | None:intergenic |
| GGATTGGCGGTGGTGCACAC+AGG | 0.426225 | 1_1:-5873193 | None:intergenic |
| AGTTATGATTCCAGGAAATT+GGG | 0.427023 | 1_1:+5878039 | Msa0003360:CDS |
| AATGAATTACCTGAAGGTCT+TGG | 0.427414 | 1_1:-5873558 | None:intergenic |
| GGTGGTGCACACAGGGGTTA+GGG | 0.430634 | 1_1:-5873185 | None:intergenic |
| AGGAAAGCTCACAGTGCCCC+AGG | 0.436680 | 1_1:+5879087 | Msa0003360:CDS |
| GGCCATCTGTCGATGCTGTC+AGG | 0.439615 | 1_1:-5876186 | None:intergenic |
| GGCGGTGAGCTGTGGTGGAT+TGG | 0.439996 | 1_1:-5873209 | None:intergenic |
| TGCACACAGGGGTTAGGGTT+CGG | 0.441760 | 1_1:-5873180 | None:intergenic |
| GTGAGAATCTTCCCTTATAA+TGG | 0.443627 | 1_1:+5878335 | Msa0003360:CDS |
| TGCTGTGACCACCATTATAA+GGG | 0.445472 | 1_1:-5878346 | None:intergenic |
| TCCTCCGTTCGCCGTTGTAA+AGG | 0.448837 | 1_1:+5873245 | Msa0003360:five_prime_UTR |
| TGTTACAACAAAGCCGTTGC+GGG | 0.449730 | 1_1:+5879113 | Msa0003360:CDS |
| GAAGCCTTGTATATTGGTCT+TGG | 0.453460 | 1_1:-5879015 | None:intergenic |
| AAATCTTCAATTCAATCAAA+AGG | 0.456369 | 1_1:+5879430 | Msa0003360:three_prime_UTR |
| TGTTGAAGGTCAACTGAACT+AGG | 0.456544 | 1_1:-5873115 | None:intergenic |
| TAGATATATGGAATCACAAC+AGG | 0.461587 | 1_1:+5876692 | Msa0003360:CDS |
| GATTGGCGGTGGTGCACACA+GGG | 0.462317 | 1_1:-5873192 | None:intergenic |
| TGTAGATGCAATTTCGTGTA+TGG | 0.462793 | 1_1:+5873938 | Msa0003360:CDS |
| CCAAAACCAATTCTATAGCT+TGG | 0.466953 | 1_1:+5877833 | Msa0003360:CDS |
| CTTGCAATACGGTTAACTTC+AGG | 0.470144 | 1_1:-5878979 | None:intergenic |
| TGCTCTCAATGCAGTGAAGT+TGG | 0.475144 | 1_1:+5873752 | Msa0003360:CDS |
| GATATTGACTACTCACCAAC+TGG | 0.479569 | 1_1:+5878190 | Msa0003360:CDS |
| ATTTCTGTCCGCTTTAATCC+AGG | 0.483582 | 1_1:+5876855 | Msa0003360:CDS |
| TGTGTCAAGTTCAGCGGCGA+TGG | 0.483997 | 1_1:+5878583 | Msa0003360:CDS |
| AACTGTTCTATCATAAGATC+CGG | 0.487930 | 1_1:-5878227 | None:intergenic |
| ATAATTCTTCTTTCCCGCAA+CGG | 0.501061 | 1_1:-5879126 | None:intergenic |
| CAATGCAGTGAAGTTGGATA+AGG | 0.505068 | 1_1:+5873758 | Msa0003360:CDS |
| TGAGCGGCGGTGAGCTGTGG+TGG | 0.509257 | 1_1:-5873214 | None:intergenic |
| CAAAGTTATATCACGCTCTA+CGG | 0.510796 | 1_1:+5873513 | Msa0003360:CDS |
| GCTTTGTTGTAACACTCCCT+GGG | 0.513233 | 1_1:-5879104 | None:intergenic |
| GGCCGCATTCTTGTTTCATG+TGG | 0.514047 | 1_1:+5876205 | Msa0003360:CDS |
| TTAGGGTTCGGAATTGGCAG+AGG | 0.514464 | 1_1:-5873168 | None:intergenic |
| CAAAATGCTCGCCGTCCCAC+TGG | 0.516418 | 1_1:-5876651 | None:intergenic |
| GGTGAGCTGTGGTGGATTGG+CGG | 0.521355 | 1_1:-5873206 | None:intergenic |
| AGTAAGGAAAATGATAATGA+TGG | 0.524836 | 1_1:+5877559 | Msa0003360:CDS |
| CGGACTGTTTGTCAGTTCCC+TGG | 0.530233 | 1_1:+5876142 | Msa0003360:CDS |
| TCAGGCCTCGCACAGCACCT+TGG | 0.533050 | 1_1:-5876168 | None:intergenic |
| CAATATATATATTTATGAAG+TGG | 0.537187 | 1_1:+5879197 | Msa0003360:three_prime_UTR |
| ATTATCAGAGAAGTTGAGTG+AGG | 0.539555 | 1_1:+5879144 | Msa0003360:CDS |
| TTCTATAGCTTGGAATCCAA+TGG | 0.540411 | 1_1:+5877843 | Msa0003360:CDS |
| AGTGTCTATGCCTTGCAATA+CGG | 0.542864 | 1_1:-5878990 | None:intergenic |
| GGTTCGGAATTGGCAGAGGA+TGG | 0.545542 | 1_1:-5873164 | None:intergenic |
| TATTCCACCGCCTTCTCTTG+AGG | 0.547207 | 1_1:-5873723 | None:intergenic |
| GGCCTGACAGCATCGACAGA+TGG | 0.550525 | 1_1:+5876184 | Msa0003360:CDS |
| ACATCGCATAACATCGGCTC+CGG | 0.555583 | 1_1:+5873135 | Msa0003360:five_prime_UTR |
| GGCATGCAGGCAAATGAAGA+TGG | 0.559590 | 1_1:+5878006 | Msa0003360:intron |
| CTTTGGCCTTCCAAAGTCTG+AGG | 0.561645 | 1_1:-5878639 | None:intergenic |
| GCCAAAGCATCAGAACAACT+TGG | 0.571500 | 1_1:+5878655 | Msa0003360:CDS |
| TACGGATGGATACCCCAGTA+AGG | 0.575067 | 1_1:+5877543 | Msa0003360:CDS |
| CCGATGTTATGCGATGTTGA+AGG | 0.577095 | 1_1:-5873129 | None:intergenic |
| TGGCAGAGGATGGTGCTAGC+CGG | 0.578600 | 1_1:-5873154 | None:intergenic |
| GTGTTACAACAAAGCCGTTG+CGG | 0.579532 | 1_1:+5879112 | Msa0003360:CDS |
| GAGCTGTGGTGGATTGGCGG+TGG | 0.580519 | 1_1:-5873203 | None:intergenic |
| CAATGAGCGGCGGTGAGCTG+TGG | 0.581863 | 1_1:-5873217 | None:intergenic |
| GCACAGCACCTTGGTGTCCA+GGG | 0.584408 | 1_1:-5876159 | None:intergenic |
| GGACACCAAGGTGCTGTGCG+AGG | 0.590155 | 1_1:+5876163 | Msa0003360:CDS |
| TACTAACCTCAGACTTTGGA+AGG | 0.594251 | 1_1:+5878633 | Msa0003360:CDS |
| AGGCCATAAAGAAACGCTAC+AGG | 0.594578 | 1_1:+5878950 | Msa0003360:CDS |
| CTTACCAAGACCAATATACA+AGG | 0.596333 | 1_1:+5879011 | Msa0003360:CDS |
| TAGCGCTGTTGATCACCAGT+GGG | 0.597150 | 1_1:+5876636 | Msa0003360:intron |
| TTAGCGCTGTTGATCACCAG+TGG | 0.600322 | 1_1:+5876635 | Msa0003360:intron |
| TGTCAGTTCCCTGGACACCA+AGG | 0.601209 | 1_1:+5876151 | Msa0003360:CDS |
| CACACCTTTACAACGGCGAA+CGG | 0.605066 | 1_1:-5873249 | None:intergenic |
| GGAAAGCTCACAGTGCCCCA+GGG | 0.606954 | 1_1:+5879088 | Msa0003360:CDS |
| AATTCTTCGTCCTCAAGAGA+AGG | 0.607045 | 1_1:+5873713 | Msa0003360:CDS |
| CTGAAGTTAACCGTATTGCA+AGG | 0.608965 | 1_1:+5878980 | Msa0003360:CDS |
| ATCTCTTAGCAAGCTCAGCT+AGG | 0.612178 | 1_1:+5876886 | Msa0003360:CDS |
| ATCATACTAAAAGAATGCAA+AGG | 0.613308 | 1_1:+5878378 | Msa0003360:CDS |
| TCGTCCTCAAGAGAAGGCGG+TGG | 0.613718 | 1_1:+5873719 | Msa0003360:CDS |
| GTGACAAATTCTCGACCAGT+TGG | 0.617530 | 1_1:-5878205 | None:intergenic |
| TTGGTTCTCCTGGATTAAAG+CGG | 0.621177 | 1_1:-5876863 | None:intergenic |
| GTCTTTGGGATATAGCTGCT+AGG | 0.627694 | 1_1:+5875776 | Msa0003360:CDS |
| TGATGCCACAGGTTCTTCCG+AGG | 0.628636 | 1_1:+5878902 | Msa0003360:intron |
| AGAATCTTCCCTTATAATGG+TGG | 0.629250 | 1_1:+5878338 | Msa0003360:CDS |
| ACCTTTACAACGGCGAACGG+AGG | 0.630519 | 1_1:-5873246 | None:intergenic |
| AAATCTGTATGATTTACGGA+TGG | 0.631713 | 1_1:+5877529 | Msa0003360:CDS |
| ATCTACTTGAGCGCCACCTG+TGG | 0.634797 | 1_1:-5876674 | None:intergenic |
| GATGCCACAGGTTCTTCCGA+GGG | 0.636446 | 1_1:+5878903 | Msa0003360:intron |
| ATATATGCACACCTTTACAA+CGG | 0.636759 | 1_1:-5873256 | None:intergenic |
| GCTGTTGATCACCAGTGGGA+CGG | 0.644849 | 1_1:+5876640 | Msa0003360:CDS |
| GTATTCTGTGTCAAGTTCAG+CGG | 0.646929 | 1_1:+5878577 | Msa0003360:CDS |
| ACTGGTCGAGAATTTGTCAC+CGG | 0.649767 | 1_1:+5878208 | Msa0003360:CDS |
| AGTTATATCACGCTCTACGG+AGG | 0.657642 | 1_1:+5873516 | Msa0003360:CDS |
| ATTGGCGGTGGTGCACACAG+GGG | 0.672431 | 1_1:-5873191 | None:intergenic |
| CCTTCAACATCGCATAACAT+CGG | 0.675434 | 1_1:+5873129 | Msa0003360:five_prime_UTR |
| CAATACGGTTAACTTCAGGA+AGG | 0.681036 | 1_1:-5878975 | None:intergenic |
| TCTTCGTCCTCAAGAGAAGG+CGG | 0.682148 | 1_1:+5873716 | Msa0003360:CDS |
| TTCCACATGAAACAAGAATG+CGG | 0.692579 | 1_1:-5876207 | None:intergenic |
| ACGGAGGAAGTAGCAATGAG+CGG | 0.696929 | 1_1:-5873230 | None:intergenic |
| CTTTGTTGTAACACTCCCTG+GGG | 0.701621 | 1_1:-5879103 | None:intergenic |
| GAGGAAGTAGCAATGAGCGG+CGG | 0.735597 | 1_1:-5873227 | None:intergenic |
| GAAGAAGCATGACTATCACG+AGG | 0.736007 | 1_1:+5878930 | Msa0003360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATCATTTTGTTAT+AGG | - | chr1_1:5873376-5873395 | None:intergenic | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTTG+TGG | + | chr1_1:5873871-5873890 | Msa0003360:intron | 10.0% |
| !! | AAATAAATAAGAAATTAGAA+TGG | + | chr1_1:5874411-5874430 | Msa0003360:intron | 10.0% |
| !!! | TAATTATGATATATTTTAAC+TGG | + | chr1_1:5874860-5874879 | Msa0003360:intron | 10.0% |
| !!! | AATTATGATATATTTTAACT+GGG | + | chr1_1:5874861-5874880 | Msa0003360:intron | 10.0% |
| !!! | TTTTTTGTAAAATTTTCTTT+TGG | + | chr1_1:5876442-5876461 | Msa0003360:intron | 10.0% |
| !!! | TAGTTTTATTTAGTTAAATA+TGG | + | chr1_1:5877305-5877324 | Msa0003360:intron | 10.0% |
| !! | TAATCAAAAGAAAAATAATA+AGG | - | chr1_1:5877672-5877691 | None:intergenic | 10.0% |
| !!! | TATTGTGAATATGATTTTAT+AGG | + | chr1_1:5873808-5873827 | Msa0003360:intron | 15.0% |
| !!! | ATATGTATAAACTATTTCTA+TGG | + | chr1_1:5874067-5874086 | Msa0003360:intron | 15.0% |
| !!! | TTTTAAATCAATCTATCAAA+TGG | - | chr1_1:5874381-5874400 | None:intergenic | 15.0% |
| !!! | GATTGATTTAAAATGATATT+TGG | + | chr1_1:5874388-5874407 | Msa0003360:intron | 15.0% |
| !!! | ACAATTTTCAAAATATAAGT+TGG | + | chr1_1:5874748-5874767 | Msa0003360:intron | 15.0% |
| !!! | ACAAGATTATTTTAGTTTAA+AGG | + | chr1_1:5874821-5874840 | Msa0003360:intron | 15.0% |
| !! | AATTTACCAAAATTAAAGTT+TGG | - | chr1_1:5874999-5875018 | None:intergenic | 15.0% |
| !! | GTTAATATAGTAGTTTAAAA+CGG | - | chr1_1:5875727-5875746 | None:intergenic | 15.0% |
| !!! | CATTTAAAATTGAAAGAAAA+AGG | - | chr1_1:5875811-5875830 | None:intergenic | 15.0% |
| !!! | TAATATTGTCATTTTGTTTA+TGG | + | chr1_1:5876111-5876130 | Msa0003360:intron | 15.0% |
| !! | GATTATATAATTAACACTAA+GGG | + | chr1_1:5876954-5876973 | Msa0003360:intron | 15.0% |
| !! | ATTATATAATTAACACTAAG+GGG | + | chr1_1:5876955-5876974 | Msa0003360:intron | 15.0% |
| !!! | GAACTGATTTATATTTATTT+TGG | + | chr1_1:5877376-5877395 | Msa0003360:intron | 15.0% |
| !!! | ATTATCATTAGTTTAAATCA+TGG | + | chr1_1:5877598-5877617 | Msa0003360:intron | 15.0% |
| !! | TTGTAATTATTATTAAACTG+AGG | + | chr1_1:5877645-5877664 | Msa0003360:intron | 15.0% |
| !! | TAAGAATATTTCAATAAACT+CGG | - | chr1_1:5878516-5878535 | None:intergenic | 15.0% |
| !! | CAATATATATATTTATGAAG+TGG | + | chr1_1:5879197-5879216 | Msa0003360:three_prime_UTR | 15.0% |
| !! | AAATTGAAAAGAAAGATTTA+GGG | + | chr1_1:5879453-5879472 | Msa0003360:three_prime_UTR | 15.0% |
| !! | TCACAATAAAAAAACACATA+GGG | - | chr1_1:5873796-5873815 | None:intergenic | 20.0% |
| !! | TTCACAATAAAAAAACACAT+AGG | - | chr1_1:5873797-5873816 | None:intergenic | 20.0% |
| !!! | TGAATATGATTTTATAGGAT+AGG | + | chr1_1:5873813-5873832 | Msa0003360:intron | 20.0% |
| !! | AAAAATTTAGAAGAGAAGAT+AGG | + | chr1_1:5874342-5874361 | Msa0003360:intron | 20.0% |
| !! | AAAATTTAGAAGAGAAGATA+GGG | + | chr1_1:5874343-5874362 | Msa0003360:intron | 20.0% |
| !! | ATAAGAAATTAGAATGGTTA+TGG | + | chr1_1:5874417-5874436 | Msa0003360:intron | 20.0% |
| !!! | TTCTAGTTAACATTTCTTTA+AGG | + | chr1_1:5875028-5875047 | Msa0003360:intron | 20.0% |
| !! | TCTAGTTAACATTTCTTTAA+GGG | + | chr1_1:5875029-5875048 | Msa0003360:intron | 20.0% |
| !!! | ATCTAAACAATTTTGTTTAC+AGG | - | chr1_1:5875104-5875123 | None:intergenic | 20.0% |
| !!! | TTTGAAGATTCTTTAGTTTT+GGG | - | chr1_1:5875272-5875291 | None:intergenic | 20.0% |
| !!! | ATTTGAAGATTCTTTAGTTT+TGG | - | chr1_1:5875273-5875292 | None:intergenic | 20.0% |
| !! | TAAAGAATCTTCAAATTACA+GGG | + | chr1_1:5875277-5875296 | Msa0003360:intron | 20.0% |
| !! | CCAGTAAAAAAAAATTGTTT+CGG | - | chr1_1:5875309-5875328 | None:intergenic | 20.0% |
| !!! | CGAAACAATTTTTTTTTACT+GGG | + | chr1_1:5875307-5875326 | Msa0003360:intron | 20.0% |
| !!! | GAAACAATTTTTTTTTACTG+GGG | + | chr1_1:5875308-5875327 | Msa0003360:intron | 20.0% |
| !!! | AAACAATTTTTTTTTACTGG+GGG | + | chr1_1:5875309-5875328 | Msa0003360:intron | 20.0% |
| !!! | TTTAACCTCTAAATGTTTTA+TGG | - | chr1_1:5875552-5875571 | None:intergenic | 20.0% |
| !!! | TTAGCAATTTTAAATGTTCT+GGG | + | chr1_1:5875882-5875901 | Msa0003360:intron | 20.0% |
| !!! | ACTTTTATCATATAAGAAAC+AGG | - | chr1_1:5875944-5875963 | None:intergenic | 20.0% |
| !!! | AATACATCAAACTTTTGTTA+TGG | + | chr1_1:5875971-5875990 | Msa0003360:intron | 20.0% |
| !! | GTTATGGATAAGAAAAATAT+TGG | + | chr1_1:5875987-5876006 | Msa0003360:intron | 20.0% |
| !! | ATAAGAAAAATATTGGTGAA+TGG | + | chr1_1:5875994-5876013 | Msa0003360:intron | 20.0% |
| !! | AGCTTATTTAATTAGACTTT+AGG | + | chr1_1:5876026-5876045 | Msa0003360:intron | 20.0% |
| !!! | TTTTGTTTATGGAAAAAAGA+CGG | + | chr1_1:5876122-5876141 | Msa0003360:intron | 20.0% |
| !!! | TTTTTATGCTTACAAAACAT+TGG | + | chr1_1:5876595-5876614 | Msa0003360:intron | 20.0% |
| !! | TGCTAAAAATAGAATAAACA+CGG | + | chr1_1:5876931-5876950 | Msa0003360:intron | 20.0% |
| !! | GGATTATATAATTAACACTA+AGG | + | chr1_1:5876953-5876972 | Msa0003360:intron | 20.0% |
| !! | ATGTTAATCATCTTACTTAT+AGG | + | chr1_1:5877334-5877353 | Msa0003360:intron | 20.0% |
| !! | AGGAAGGAATTTATTTAATA+AGG | + | chr1_1:5877354-5877373 | Msa0003360:intron | 20.0% |
| !! | ACTCACGAATATAATATATT+TGG | - | chr1_1:5877779-5877798 | None:intergenic | 20.0% |
| !! | TAGTGATATTTAAATTCTTG+TGG | + | chr1_1:5877971-5877990 | Msa0003360:intron | 20.0% |
| !! | ATTAACAATTTCTCATTTGT+AGG | + | chr1_1:5878313-5878332 | Msa0003360:intron | 20.0% |
| !! | AATATTCTTATCATGCTTTA+TGG | + | chr1_1:5878526-5878545 | Msa0003360:intron | 20.0% |
| !!! | TTGTTATTCAATTAGTTAGT+TGG | + | chr1_1:5878805-5878824 | Msa0003360:intron | 20.0% |
| !! | AAATCTTCAATTCAATCAAA+AGG | + | chr1_1:5879430-5879449 | Msa0003360:three_prime_UTR | 20.0% |
| !! | GAAATTGAAAAGAAAGATTT+AGG | + | chr1_1:5879452-5879471 | Msa0003360:three_prime_UTR | 20.0% |
| !! | AAACAAAAACTATTTCAAAC+AGG | - | chr1_1:5879479-5879498 | None:intergenic | 20.0% |
| !! | GAATAGATTTTACATAAGCA+AGG | - | chr1_1:5873354-5873373 | None:intergenic | 25.0% |
| ! | AGTGAAATATTCTCTCTTTA+TGG | + | chr1_1:5873466-5873485 | Msa0003360:intron | 25.0% |
| ! | TGAAGAGGTTTAACAATAAA+GGG | - | chr1_1:5873603-5873622 | None:intergenic | 25.0% |
| ! | ATGAAGAGGTTTAACAATAA+AGG | - | chr1_1:5873604-5873623 | None:intergenic | 25.0% |
| ! | ATGAATTAAGAAGAATGAAG+AGG | - | chr1_1:5873618-5873637 | None:intergenic | 25.0% |
| ! | ACACGCTAAAAAAAACAAAA+GGG | - | chr1_1:5873675-5873694 | None:intergenic | 25.0% |
| !! | ATTTTTGCTAGACCTTTTAT+AGG | + | chr1_1:5873900-5873919 | Msa0003360:CDS | 25.0% |
| ! | ATATCTCTTTCAATTGACTA+GGG | - | chr1_1:5873971-5873990 | None:intergenic | 25.0% |
| ! | AATATCTCTTTCAATTGACT+AGG | - | chr1_1:5873972-5873991 | None:intergenic | 25.0% |
| ! | ATTAAATCGTTCATCCAAAA+AGG | - | chr1_1:5874040-5874059 | None:intergenic | 25.0% |
| ! | ATTGAAGCAACATGATTAAA+GGG | - | chr1_1:5874268-5874287 | None:intergenic | 25.0% |
| ! | AATTGAAGCAACATGATTAA+AGG | - | chr1_1:5874269-5874288 | None:intergenic | 25.0% |
| ! | TATTGTTGTACACTTGATAT+AGG | + | chr1_1:5874314-5874333 | Msa0003360:intron | 25.0% |
| ! | TGAACTCCTGAAATTAAAAT+CGG | - | chr1_1:5874778-5874797 | None:intergenic | 25.0% |
| ! | TAAAATAATCTTGTTCTTCC+TGG | - | chr1_1:5874815-5874834 | None:intergenic | 25.0% |
| !! | TCACTCAAGAAAAAGAATTT+TGG | - | chr1_1:5874901-5874920 | None:intergenic | 25.0% |
| ! | ATCAGTTAACTATTAGATAG+AGG | + | chr1_1:5874941-5874960 | Msa0003360:intron | 25.0% |
| !!! | AAACAGCCAAACTTTAATTT+TGG | + | chr1_1:5874990-5875009 | Msa0003360:intron | 25.0% |
| !!! | AAACAATTTTGTTTACAGGA+GGG | - | chr1_1:5875100-5875119 | None:intergenic | 25.0% |
| !!! | TAAACAATTTTGTTTACAGG+AGG | - | chr1_1:5875101-5875120 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTTGACGTCATA+AGG | - | chr1_1:5875163-5875182 | None:intergenic | 25.0% |
| ! | ACGTCAAATTTCAAAATTGA+AGG | + | chr1_1:5875167-5875186 | Msa0003360:intron | 25.0% |
| ! | AAAATCGATGATATGATAGA+GGG | - | chr1_1:5875227-5875246 | None:intergenic | 25.0% |
| ! | CTAAAGAATCTTCAAATTAC+AGG | + | chr1_1:5875276-5875295 | Msa0003360:intron | 25.0% |
| !!! | CCGAAACAATTTTTTTTTAC+TGG | + | chr1_1:5875306-5875325 | Msa0003360:intron | 25.0% |
| ! | ATGCTACAAAGTTAAAGAAA+GGG | - | chr1_1:5875380-5875399 | None:intergenic | 25.0% |
| ! | AATGCTACAAAGTTAAAGAA+AGG | - | chr1_1:5875381-5875400 | None:intergenic | 25.0% |
| ! | TTTCATGCTTATTATGAAAG+TGG | + | chr1_1:5875466-5875485 | Msa0003360:intron | 25.0% |
| ! | GACAGTTGTTTAAACTATAA+TGG | + | chr1_1:5875488-5875507 | Msa0003360:intron | 25.0% |
| ! | AACAACCATAAAACATTTAG+AGG | + | chr1_1:5875544-5875563 | Msa0003360:intron | 25.0% |
| !! | CTTAGCAATTTTAAATGTTC+TGG | + | chr1_1:5875881-5875900 | Msa0003360:intron | 25.0% |
| ! | TAATTAAATAAGCTGATGCA+TGG | - | chr1_1:5876020-5876039 | None:intergenic | 25.0% |
| ! | AGTAAAAGAAAAACGAAAAG+AGG | - | chr1_1:5876254-5876273 | None:intergenic | 25.0% |
| ! | GCTAAAAATAGAATAAACAC+GGG | + | chr1_1:5876932-5876951 | Msa0003360:intron | 25.0% |
| ! | TAATCATCTTACTTATAGGA+AGG | + | chr1_1:5877338-5877357 | Msa0003360:intron | 25.0% |
| !! | TTTTGATCTACTACTTACAT+TGG | + | chr1_1:5877429-5877448 | Msa0003360:intron | 25.0% |
| !!! | TTTTTTGTTTTTTCAGTGAC+AGG | + | chr1_1:5877501-5877520 | Msa0003360:intron | 25.0% |
| ! | GCATAAATCTGTATGATTTA+CGG | + | chr1_1:5877525-5877544 | Msa0003360:CDS | 25.0% |
| !! | TCATTATCATTTTCCTTACT+GGG | - | chr1_1:5877559-5877578 | None:intergenic | 25.0% |
| !! | ATCATTATCATTTTCCTTAC+TGG | - | chr1_1:5877560-5877579 | None:intergenic | 25.0% |
| !! | AGTAAGGAAAATGATAATGA+TGG | + | chr1_1:5877559-5877578 | Msa0003360:CDS | 25.0% |
| !!! | CTTTTGATTATACATATCCT+TGG | + | chr1_1:5877682-5877701 | Msa0003360:intron | 25.0% |
| !! | TTTTTCTGCTTCATATCTTT+TGG | + | chr1_1:5877745-5877764 | Msa0003360:intron | 25.0% |
| ! | CTTACCACTGTAAAATTTAT+GGG | - | chr1_1:5877871-5877890 | None:intergenic | 25.0% |
| ! | ACTTACCACTGTAAAATTTA+TGG | - | chr1_1:5877872-5877891 | None:intergenic | 25.0% |
| !! | TTCTTGTGGACAAATTTTAT+TGG | + | chr1_1:5877985-5878004 | Msa0003360:intron | 25.0% |
| ! | AGTAAGAAGATAAAATGACA+AGG | - | chr1_1:5878276-5878295 | None:intergenic | 25.0% |
| ! | ATCATACTAAAAGAATGCAA+AGG | + | chr1_1:5878378-5878397 | Msa0003360:CDS | 25.0% |
| !! | AATCTTTATCTTTTGTACAC+AGG | + | chr1_1:5878554-5878573 | Msa0003360:intron | 25.0% |
| !! | ATCTTTATCTTTTGTACACA+GGG | + | chr1_1:5878555-5878574 | Msa0003360:intron | 25.0% |
| ! | AAACTGTCATCTATTAATTG+TGG | + | chr1_1:5878740-5878759 | Msa0003360:intron | 25.0% |
| !! | AGTTTATATACTGTTTTCTC+AGG | + | chr1_1:5879224-5879243 | Msa0003360:three_prime_UTR | 25.0% |
| !! | GAAATCAATAGCTAATTTTG+TGG | + | chr1_1:5879276-5879295 | Msa0003360:three_prime_UTR | 25.0% |
| !! | CTGAACTAGGTTTTATAACT+GGG | - | chr1_1:5873105-5873124 | None:intergenic | 30.0% |
| !! | ACTGAACTAGGTTTTATAAC+TGG | - | chr1_1:5873106-5873125 | None:intergenic | 30.0% |
| ATATATGCACACCTTTACAA+CGG | - | chr1_1:5873259-5873278 | None:intergenic | 30.0% | |
| ATTGACACTTCTACTGAATT+TGG | + | chr1_1:5873432-5873451 | Msa0003360:intron | 30.0% | |
| GACACGCTAAAAAAAACAAA+AGG | - | chr1_1:5873676-5873695 | None:intergenic | 30.0% | |
| GAAGAATTGGATCGTAATTA+CGG | - | chr1_1:5873701-5873720 | None:intergenic | 30.0% | |
| CAATTGAAAGAGATATTCTC+TGG | + | chr1_1:5873975-5873994 | Msa0003360:intron | 30.0% | |
| ! | TACTTCAATTTTCCTTACTC+AGG | + | chr1_1:5874013-5874032 | Msa0003360:intron | 30.0% |
| !! | GTTTATAAGCACTTTTGAGA+CGG | - | chr1_1:5874229-5874248 | None:intergenic | 30.0% |
| TCAATTTCATGCTTAGCTAA+TGG | + | chr1_1:5874283-5874302 | Msa0003360:intron | 30.0% | |
| TTGTACACTTGATATAGGAT+TGG | + | chr1_1:5874319-5874338 | Msa0003360:intron | 30.0% | |
| AATGGTTATGGTTATGCTAA+TGG | + | chr1_1:5874429-5874448 | Msa0003360:intron | 30.0% | |
| ATGGTTATGGTTATGCTAAT+GGG | + | chr1_1:5874430-5874449 | Msa0003360:intron | 30.0% | |
| GAACTCCTGAAATTAAAATC+GGG | - | chr1_1:5874777-5874796 | None:intergenic | 30.0% | |
| !! | AACAATTTTGTTTACAGGAG+GGG | - | chr1_1:5875099-5875118 | None:intergenic | 30.0% |
| CAAAGAATCTTCAAACTACA+GGG | - | chr1_1:5875132-5875151 | None:intergenic | 30.0% | |
| !! | GTTTGAAGATTCTTTGGTTT+TGG | + | chr1_1:5875136-5875155 | Msa0003360:intron | 30.0% |
| CAAAATCGATGATATGATAG+AGG | - | chr1_1:5875228-5875247 | None:intergenic | 30.0% | |
| TGTACAGTCAAAATTCATGA+AGG | + | chr1_1:5875246-5875265 | Msa0003360:intron | 30.0% | |
| TGTAGCATTACACATGTAAT+TGG | + | chr1_1:5875392-5875411 | Msa0003360:intron | 30.0% | |
| CTTTGCATAATTCTCATAGA+TGG | + | chr1_1:5875515-5875534 | Msa0003360:intron | 30.0% | |
| ! | TATATTTGCTTTCTGAAGAG+TGG | + | chr1_1:5875906-5875925 | Msa0003360:intron | 30.0% |
| AATTAGACTTTAGGCAATGA+TGG | + | chr1_1:5876035-5876054 | Msa0003360:intron | 30.0% | |
| AAAGAAAAACGAAAAGAGGT+TGG | - | chr1_1:5876250-5876269 | None:intergenic | 30.0% | |
| CTCAATTAAGACAACTATTG+AGG | + | chr1_1:5876396-5876415 | Msa0003360:intron | 30.0% | |
| AATTAAGACAACTATTGAGG+TGG | + | chr1_1:5876399-5876418 | Msa0003360:intron | 30.0% | |
| ! | ATGTTTGGAAGAATGCATTT+TGG | + | chr1_1:5876514-5876533 | Msa0003360:intron | 30.0% |
| !! | AATGCATTTTGGTAAGTCAT+AGG | + | chr1_1:5876525-5876544 | Msa0003360:intron | 30.0% |
| !! | ATGCATTTTGGTAAGTCATA+GGG | + | chr1_1:5876526-5876545 | Msa0003360:intron | 30.0% |
| ! | ATAGGGCTGTTATTTATTTC+AGG | + | chr1_1:5876543-5876562 | Msa0003360:intron | 30.0% |
| TAGATATATGGAATCACAAC+AGG | + | chr1_1:5876692-5876711 | Msa0003360:CDS | 30.0% | |
| TAAGAGTCTACAAAAGTAGT+CGG | - | chr1_1:5876760-5876779 | None:intergenic | 30.0% | |
| !!! | AGCCAGTAAATAGTTTTGTA+TGG | + | chr1_1:5876817-5876836 | Msa0003360:CDS | 30.0% |
| !!! | GCCAGTAAATAGTTTTGTAT+GGG | + | chr1_1:5876818-5876837 | Msa0003360:CDS | 30.0% |
| !!! | CCAGTAAATAGTTTTGTATG+GGG | + | chr1_1:5876819-5876838 | Msa0003360:CDS | 30.0% |
| ATATAACCTCCTTGTAGAAA+TGG | + | chr1_1:5877026-5877045 | Msa0003360:intron | 30.0% | |
| TTAGATGTACCATTTCTACA+AGG | - | chr1_1:5877038-5877057 | None:intergenic | 30.0% | |
| ACTAGGGAAAATAACTGAAA+GGG | - | chr1_1:5877159-5877178 | None:intergenic | 30.0% | |
| ATTAAGGTCAATGTTCTCAA+TGG | - | chr1_1:5877263-5877282 | None:intergenic | 30.0% | |
| AACCAAGACTAACTAGATTA+AGG | - | chr1_1:5877279-5877298 | None:intergenic | 30.0% | |
| AAATCTGTATGATTTACGGA+TGG | + | chr1_1:5877529-5877548 | Msa0003360:CDS | 30.0% | |
| ! | CATTATCATTTTCCTTACTG+GGG | - | chr1_1:5877558-5877577 | None:intergenic | 30.0% |
| GTAAAATTTATGGGTTCCAT+TGG | - | chr1_1:5877862-5877881 | None:intergenic | 30.0% | |
| TAGTTATGATTCCAGGAAAT+TGG | + | chr1_1:5878038-5878057 | Msa0003360:CDS | 30.0% | |
| AGTTATGATTCCAGGAAATT+GGG | + | chr1_1:5878039-5878058 | Msa0003360:CDS | 30.0% | |
| GTGATCTTTATGAACACATT+TGG | - | chr1_1:5878070-5878089 | None:intergenic | 30.0% | |
| ! | ATTTTCATGTTTCACTCTAC+AGG | + | chr1_1:5878164-5878183 | Msa0003360:intron | 30.0% |
| AACTGTTCTATCATAAGATC+CGG | - | chr1_1:5878230-5878249 | None:intergenic | 30.0% | |
| AAGGTTATAATGAAGTCCAA+GGG | - | chr1_1:5878257-5878276 | None:intergenic | 30.0% | |
| ! | AGAAATCTTTTAAACAGCTG+AGG | - | chr1_1:5878480-5878499 | None:intergenic | 30.0% |
| GATGGAAGTTATGTAATTTC+AGG | + | chr1_1:5878601-5878620 | Msa0003360:CDS | 30.0% | |
| TTCAATTAGTTAGTTGGCTA+TGG | + | chr1_1:5878811-5878830 | Msa0003360:intron | 30.0% | |
| CTCAGAAGAGAAATTATTAG+AGG | - | chr1_1:5878842-5878861 | None:intergenic | 30.0% | |
| CTAATAATTTCTCTTCTGAG+AGG | + | chr1_1:5878842-5878861 | Msa0003360:intron | 30.0% | |
| ! | AAAGAAGAAGCCTTGTATAT+TGG | - | chr1_1:5879024-5879043 | None:intergenic | 30.0% |
| TACACCAAAATTTCTTGCAT+TGG | - | chr1_1:5879331-5879350 | None:intergenic | 30.0% | |
| CAAAGTTATATCACGCTCTA+CGG | + | chr1_1:5873513-5873532 | Msa0003360:CDS | 35.0% | |
| AATGAATTACCTGAAGGTCT+TGG | - | chr1_1:5873561-5873580 | None:intergenic | 35.0% | |
| GCATTGAATGAATTACCTGA+AGG | - | chr1_1:5873567-5873586 | None:intergenic | 35.0% | |
| ! | TAGACCTTTTATAGGAGCAA+TGG | + | chr1_1:5873908-5873927 | Msa0003360:CDS | 35.0% |
| TGTAGATGCAATTTCGTGTA+TGG | + | chr1_1:5873938-5873957 | Msa0003360:CDS | 35.0% | |
| ! | AGAGATATTCTCTGGTTCAA+TGG | + | chr1_1:5873983-5874002 | Msa0003360:intron | 35.0% |
| ! | ATATTCTCTGGTTCAATGGA+TGG | + | chr1_1:5873987-5874006 | Msa0003360:intron | 35.0% |
| ! | CTTATTTCCACAAGCTTTTC+AGG | - | chr1_1:5874154-5874173 | None:intergenic | 35.0% |
| CTGAAAAGCTTGTGGAAATA+AGG | + | chr1_1:5874152-5874171 | Msa0003360:intron | 35.0% | |
| AGAAAGATTGGAAGAGTGAT+GGG | + | chr1_1:5874456-5874475 | Msa0003360:intron | 35.0% | |
| ATGCTGTTGAAAGTTTGGTT+TGG | + | chr1_1:5874482-5874501 | Msa0003360:intron | 35.0% | |
| AAAAACCACCAATGAAACAC+GGG | - | chr1_1:5874530-5874549 | None:intergenic | 35.0% | |
| GAAAAACCACCAATGAAACA+CGG | - | chr1_1:5874531-5874550 | None:intergenic | 35.0% | |
| ATTACAAATAGCCTAGCAGA+GGG | - | chr1_1:5874571-5874590 | None:intergenic | 35.0% | |
| GCTAGGCTATTTGTAATCTT+TGG | + | chr1_1:5874574-5874593 | Msa0003360:intron | 35.0% | |
| TGTCTACAAGTTTCTTGACT+GGG | - | chr1_1:5874648-5874667 | None:intergenic | 35.0% | |
| !!! | GGATACCCGATTTTAATTTC+AGG | + | chr1_1:5874769-5874788 | Msa0003360:intron | 35.0% |
| TTCAGTAGATAGTAAGATCC+AGG | + | chr1_1:5874794-5874813 | Msa0003360:intron | 35.0% | |
| CTAGAAATCGCTAATGTTAC+AGG | - | chr1_1:5875072-5875091 | None:intergenic | 35.0% | |
| CCAAAGAATCTTCAAACTAC+AGG | - | chr1_1:5875133-5875152 | None:intergenic | 35.0% | |
| CCTGTAGTTTGAAGATTCTT+TGG | + | chr1_1:5875130-5875149 | Msa0003360:intron | 35.0% | |
| AAAATCCGCTCAAATTACAG+GGG | - | chr1_1:5875203-5875222 | None:intergenic | 35.0% | |
| CAAAATCCGCTCAAATTACA+GGG | - | chr1_1:5875204-5875223 | None:intergenic | 35.0% | |
| ACTGTAATATTAGCGGTTTC+TGG | - | chr1_1:5875339-5875358 | None:intergenic | 35.0% | |
| AGAAACCGCTAATATTACAG+TGG | + | chr1_1:5875338-5875357 | Msa0003360:intron | 35.0% | |
| GAAACCGCTAATATTACAGT+GGG | + | chr1_1:5875339-5875358 | Msa0003360:intron | 35.0% | |
| AAACCGCTAATATTACAGTG+GGG | + | chr1_1:5875340-5875359 | Msa0003360:intron | 35.0% | |
| TTACCCCACTGTAATATTAG+CGG | - | chr1_1:5875346-5875365 | None:intergenic | 35.0% | |
| ! | TTTTCCAACCTCCTTATAAG+TGG | + | chr1_1:5875422-5875441 | Msa0003360:intron | 35.0% |
| TTTCCAACCTCCTTATAAGT+GGG | + | chr1_1:5875423-5875442 | Msa0003360:intron | 35.0% | |
| TAATGGCACTAGTATAGAGA+GGG | - | chr1_1:5875678-5875697 | None:intergenic | 35.0% | |
| ! | CAAGTAAGGAAAAGGTGTAA+TGG | - | chr1_1:5875695-5875714 | None:intergenic | 35.0% |
| TTGAGCATCAAGTAAGGAAA+AGG | - | chr1_1:5875703-5875722 | None:intergenic | 35.0% | |
| TGTTTGCAGATATTCGTCTT+TGG | + | chr1_1:5875761-5875780 | Msa0003360:intron | 35.0% | |
| GTTTGCAGATATTCGTCTTT+GGG | + | chr1_1:5875762-5875781 | Msa0003360:intron | 35.0% | |
| ! | TTCATGTTGGTTACAACTTG+TGG | + | chr1_1:5876069-5876088 | Msa0003360:intron | 35.0% |
| ! | TCATGTTGGTTACAACTTGT+GGG | + | chr1_1:5876070-5876089 | Msa0003360:intron | 35.0% |
| TTCCACATGAAACAAGAATG+CGG | - | chr1_1:5876210-5876229 | None:intergenic | 35.0% | |
| ! | AACTTTTCTGATGTGTGAAC+TGG | + | chr1_1:5876311-5876330 | Msa0003360:intron | 35.0% |
| TTATGTTCAGTGTCAGACTT+TGG | + | chr1_1:5876338-5876357 | Msa0003360:intron | 35.0% | |
| !! | AATGTTCCTGTTGCTTCTTT+TGG | + | chr1_1:5876361-5876380 | Msa0003360:intron | 35.0% |
| !! | ATGTTCCTGTTGCTTCTTTT+GGG | + | chr1_1:5876362-5876381 | Msa0003360:intron | 35.0% |
| !!! | TTTGAACTTTTTTCCCTAGC+CGG | + | chr1_1:5876482-5876501 | Msa0003360:intron | 35.0% |
| TTCCAAACATAAACACTTGC+CGG | - | chr1_1:5876504-5876523 | None:intergenic | 35.0% | |
| CCCCATACAAAACTATTTAC+TGG | - | chr1_1:5876822-5876841 | None:intergenic | 35.0% | |
| ! | TTTTGTATGGGGATCAGATA+CGG | + | chr1_1:5876830-5876849 | Msa0003360:CDS | 35.0% |
| CTGCAATTACAATACAACAG+TGG | + | chr1_1:5876984-5877003 | Msa0003360:intron | 35.0% | |
| CTAGGGAAAATAACTGAAAG+GGG | - | chr1_1:5877158-5877177 | None:intergenic | 35.0% | |
| GACTAGGGAAAATAACTGAA+AGG | - | chr1_1:5877160-5877179 | None:intergenic | 35.0% | |
| ATTGATGGGAGTTGAGTTAA+CGG | - | chr1_1:5877237-5877256 | None:intergenic | 35.0% | |
| GTTCTCAATGGTGAATTGAT+GGG | - | chr1_1:5877251-5877270 | None:intergenic | 35.0% | |
| TGTTCTCAATGGTGAATTGA+TGG | - | chr1_1:5877252-5877271 | None:intergenic | 35.0% | |
| ! | GACCTTAATCTAGTTAGTCT+TGG | + | chr1_1:5877274-5877293 | Msa0003360:intron | 35.0% |
| !!! | CATGGCACATGTTTTGATTT+TGG | + | chr1_1:5877616-5877635 | Msa0003360:intron | 35.0% |
| !! | CCAAGCTATAGAATTGGTTT+TGG | - | chr1_1:5877836-5877855 | None:intergenic | 35.0% |
| CCAAAACCAATTCTATAGCT+TGG | + | chr1_1:5877833-5877852 | Msa0003360:CDS | 35.0% | |
| TGGATTCCAAGCTATAGAAT+TGG | - | chr1_1:5877842-5877861 | None:intergenic | 35.0% | |
| TTCTATAGCTTGGAATCCAA+TGG | + | chr1_1:5877843-5877862 | Msa0003360:CDS | 35.0% | |
| ! | GGAACCCATAAATTTTACAG+TGG | + | chr1_1:5877864-5877883 | Msa0003360:CDS | 35.0% |
| !! | AATAAAAGCATCAGAACCAC+TGG | - | chr1_1:5877912-5877931 | None:intergenic | 35.0% |
| ! | GACAAATTTTATTGGCATGC+AGG | + | chr1_1:5877993-5878012 | Msa0003360:intron | 35.0% |
| ACTGCTATAGTTATGATTCC+AGG | + | chr1_1:5878031-5878050 | Msa0003360:CDS | 35.0% | |
| ACGTTTCTGCAGTGTAATTA+TGG | + | chr1_1:5878088-5878107 | Msa0003360:intron | 35.0% | |
| CAAGGTTATAATGAAGTCCA+AGG | - | chr1_1:5878258-5878277 | None:intergenic | 35.0% | |
| GTGAGAATCTTCCCTTATAA+TGG | + | chr1_1:5878335-5878354 | Msa0003360:CDS | 35.0% | |
| AGAATCTTCCCTTATAATGG+TGG | + | chr1_1:5878338-5878357 | Msa0003360:CDS | 35.0% | |
| ATGATACTAACCTCAGACTT+TGG | + | chr1_1:5878629-5878648 | Msa0003360:CDS | 35.0% | |
| ATCTCAGGGAATGAATTGAA+GGG | - | chr1_1:5878868-5878887 | None:intergenic | 35.0% | |
| AATCTCAGGGAATGAATTGA+AGG | - | chr1_1:5878869-5878888 | None:intergenic | 35.0% | |
| CTTACCAAGACCAATATACA+AGG | + | chr1_1:5879011-5879030 | Msa0003360:CDS | 35.0% | |
| AGCTGATGCTAAGAAAAAGA+AGG | + | chr1_1:5879056-5879075 | Msa0003360:CDS | 35.0% | |
| CTAAGAAAAAGAAGGAAGAG+AGG | + | chr1_1:5879064-5879083 | Msa0003360:CDS | 35.0% | |
| ATAATTCTTCTTTCCCGCAA+CGG | - | chr1_1:5879129-5879148 | None:intergenic | 35.0% | |
| ATTATCAGAGAAGTTGAGTG+AGG | + | chr1_1:5879144-5879163 | Msa0003360:CDS | 35.0% | |
| !! | TTGCATTTTTCAGTATGCAC+TGG | - | chr1_1:5879180-5879199 | None:intergenic | 35.0% |
| ! | ATACTGTTTTCTCAGGCAAA+TGG | + | chr1_1:5879231-5879250 | Msa0003360:three_prime_UTR | 35.0% |
| ! | TTTTGTGGTGTTTTACTGCT+TGG | + | chr1_1:5879291-5879310 | Msa0003360:three_prime_UTR | 35.0% |
| ! | TGTGCCAATGCAAGAAATTT+TGG | + | chr1_1:5879324-5879343 | Msa0003360:three_prime_UTR | 35.0% |
| TGTTGAAGGTCAACTGAACT+AGG | - | chr1_1:5873118-5873137 | None:intergenic | 40.0% | |
| CCTTCAACATCGCATAACAT+CGG | + | chr1_1:5873129-5873148 | Msa0003360:five_prime_UTR | 40.0% | |
| TTCTCTTGAGGACGAAGAAT+TGG | - | chr1_1:5873714-5873733 | None:intergenic | 40.0% | |
| AATTCTTCGTCCTCAAGAGA+AGG | + | chr1_1:5873713-5873732 | Msa0003360:CDS | 40.0% | |
| CAATGCAGTGAAGTTGGATA+AGG | + | chr1_1:5873758-5873777 | Msa0003360:CDS | 40.0% | |
| CCATCCATTGCTCCTATAAA+AGG | - | chr1_1:5873915-5873934 | None:intergenic | 40.0% | |
| ! | CCTTTTATAGGAGCAATGGA+TGG | + | chr1_1:5873912-5873931 | Msa0003360:CDS | 40.0% |
| ! | TTCCTTACTCAGGTCCTTTT+TGG | + | chr1_1:5874023-5874042 | Msa0003360:intron | 40.0% |
| ATCCAAAAAGGACCTGAGTA+AGG | - | chr1_1:5874028-5874047 | None:intergenic | 40.0% | |
| AAGCTATCCTGAAAAGCTTG+TGG | + | chr1_1:5874144-5874163 | Msa0003360:intron | 40.0% | |
| !!! | AAGCACTTTTGAGACGGTTT+TGG | - | chr1_1:5874223-5874242 | None:intergenic | 40.0% |
| !! | GCTAATGGGTTGAGAAAGAT+TGG | + | chr1_1:5874444-5874463 | Msa0003360:intron | 40.0% |
| GAGAAAGATTGGAAGAGTGA+TGG | + | chr1_1:5874455-5874474 | Msa0003360:intron | 40.0% | |
| ! | GGTTGATGCTGTTGAAAGTT+TGG | + | chr1_1:5874477-5874496 | Msa0003360:intron | 40.0% |
| !! | GGTTTTTCAACACGTCTACT+TGG | + | chr1_1:5874543-5874562 | Msa0003360:intron | 40.0% |
| TTACAAATAGCCTAGCAGAG+GGG | - | chr1_1:5874570-5874589 | None:intergenic | 40.0% | |
| GATTACAAATAGCCTAGCAG+AGG | - | chr1_1:5874572-5874591 | None:intergenic | 40.0% | |
| CTTGACTGGGAGTAAAATTG+TGG | - | chr1_1:5874635-5874654 | None:intergenic | 40.0% | |
| CTGTCTACAAGTTTCTTGAC+TGG | - | chr1_1:5874649-5874668 | None:intergenic | 40.0% | |
| GAAATCGCTAATGTTACAGG+AGG | - | chr1_1:5875069-5875088 | None:intergenic | 40.0% | |
| GAATCTTCAAACTACAGGGT+TGG | - | chr1_1:5875128-5875147 | None:intergenic | 40.0% | |
| GCAAAATCCGCTCAAATTAC+AGG | - | chr1_1:5875205-5875224 | None:intergenic | 40.0% | |
| TTCCAACCTCCTTATAAGTG+GGG | + | chr1_1:5875424-5875443 | Msa0003360:intron | 40.0% | |
| TGATTCTTGCCCCACTTATA+AGG | - | chr1_1:5875436-5875455 | None:intergenic | 40.0% | |
| !! | ATTCTGGTGCTTGTTTTCAC+TGG | + | chr1_1:5875636-5875655 | Msa0003360:intron | 40.0% |
| AATGGCACTAGTATAGAGAG+GGG | - | chr1_1:5875677-5875696 | None:intergenic | 40.0% | |
| GTAATGGCACTAGTATAGAG+AGG | - | chr1_1:5875679-5875698 | None:intergenic | 40.0% | |
| !! | AACGGATTGAGCATCAAGTA+AGG | - | chr1_1:5875709-5875728 | None:intergenic | 40.0% |
| AGACTTTAGGCAATGATGGT+AGG | + | chr1_1:5876039-5876058 | Msa0003360:intron | 40.0% | |
| TTTAGGCAATGATGGTAGGA+AGG | + | chr1_1:5876043-5876062 | Msa0003360:intron | 40.0% | |
| ! | GGTAGGAAGGATTTTCATGT+TGG | + | chr1_1:5876056-5876075 | Msa0003360:intron | 40.0% |
| !! | AAAAGAGGTTGGTACTTACG+TGG | - | chr1_1:5876239-5876258 | None:intergenic | 40.0% |
| !! | TGTTCCTGTTGCTTCTTTTG+GGG | + | chr1_1:5876363-5876382 | Msa0003360:intron | 40.0% |
| ! | ATTGAGGTGGAATTTTGTGC+TGG | + | chr1_1:5876412-5876431 | Msa0003360:intron | 40.0% |
| ATTTCTGTCCGCTTTAATCC+AGG | + | chr1_1:5876855-5876874 | Msa0003360:CDS | 40.0% | |
| ! | TTGGTTCTCCTGGATTAAAG+CGG | - | chr1_1:5876866-5876885 | None:intergenic | 40.0% |
| CAGTGGCTGATTACAATGAA+TGG | + | chr1_1:5877001-5877020 | Msa0003360:intron | 40.0% | |
| GATGTACCATTTCTACAAGG+AGG | - | chr1_1:5877035-5877054 | None:intergenic | 40.0% | |
| TATCTGATCAGTTTGTCCAG+TGG | + | chr1_1:5877893-5877912 | Msa0003360:intron | 40.0% | |
| TCATGTTTCACTCTACAGGA+TGG | + | chr1_1:5878168-5878187 | Msa0003360:intron | 40.0% | |
| ! | GATATTGACTACTCACCAAC+TGG | + | chr1_1:5878190-5878209 | Msa0003360:CDS | 40.0% |
| GATAGAACAGTTAGTTCCCT+TGG | + | chr1_1:5878238-5878257 | Msa0003360:intron | 40.0% | |
| TGCTGTGACCACCATTATAA+GGG | - | chr1_1:5878349-5878368 | None:intergenic | 40.0% | |
| GTATTCTGTGTCAAGTTCAG+CGG | + | chr1_1:5878577-5878596 | Msa0003360:CDS | 40.0% | |
| TACTAACCTCAGACTTTGGA+AGG | + | chr1_1:5878633-5878652 | Msa0003360:CDS | 40.0% | |
| TCCAAGTTGTTCTGATGCTT+TGG | - | chr1_1:5878659-5878678 | None:intergenic | 40.0% | |
| TCGTAAACAGGTGAATCTCA+GGG | - | chr1_1:5878882-5878901 | None:intergenic | 40.0% | |
| ATCGTAAACAGGTGAATCTC+AGG | - | chr1_1:5878883-5878902 | None:intergenic | 40.0% | |
| ! | TCATGCTTCTTCTTTTCCCT+CGG | - | chr1_1:5878922-5878941 | None:intergenic | 40.0% |
| CAATACGGTTAACTTCAGGA+AGG | - | chr1_1:5878978-5878997 | None:intergenic | 40.0% | |
| CTTGCAATACGGTTAACTTC+AGG | - | chr1_1:5878982-5879001 | None:intergenic | 40.0% | |
| CTGAAGTTAACCGTATTGCA+AGG | + | chr1_1:5878980-5878999 | Msa0003360:CDS | 40.0% | |
| AGTGTCTATGCCTTGCAATA+CGG | - | chr1_1:5878993-5879012 | None:intergenic | 40.0% | |
| ! | GAAGCCTTGTATATTGGTCT+TGG | - | chr1_1:5879018-5879037 | None:intergenic | 40.0% |
| AGAAAAAGAAGGAAGAGAGG+AGG | + | chr1_1:5879067-5879086 | Msa0003360:CDS | 40.0% | |
| CCGATGTTATGCGATGTTGA+AGG | - | chr1_1:5873132-5873151 | None:intergenic | 45.0% | |
| AGTTATATCACGCTCTACGG+AGG | + | chr1_1:5873516-5873535 | Msa0003360:CDS | 45.0% | |
| TGCTCTCAATGCAGTGAAGT+TGG | + | chr1_1:5873752-5873771 | Msa0003360:CDS | 45.0% | |
| ! | TTCTCTGGTTCAATGGATGG+AGG | + | chr1_1:5873990-5874009 | Msa0003360:intron | 45.0% |
| AATGAAACACGGGTCTGGTT+CGG | - | chr1_1:5874520-5874539 | None:intergenic | 45.0% | |
| ! | GTGGTTGATGTATCGTCTCT+AGG | - | chr1_1:5874616-5874635 | None:intergenic | 45.0% |
| TCACTCCCCTGTAATTTGAG+CGG | + | chr1_1:5875195-5875214 | Msa0003360:intron | 45.0% | |
| TTCTTGCCCCACTTATAAGG+AGG | - | chr1_1:5875433-5875452 | None:intergenic | 45.0% | |
| GGGACAAAAAGGAGGAGTAA+TGG | - | chr1_1:5875599-5875618 | None:intergenic | 45.0% | |
| AGAATGACACAGCCAGATGT+GGG | - | chr1_1:5875621-5875640 | None:intergenic | 45.0% | |
| !! | GTCTTTGGGATATAGCTGCT+AGG | + | chr1_1:5875776-5875795 | Msa0003360:CDS | 45.0% |
| ! | ACATAAACACTTGCCGGCTA+GGG | - | chr1_1:5876498-5876517 | None:intergenic | 45.0% |
| ! | AACATAAACACTTGCCGGCT+AGG | - | chr1_1:5876499-5876518 | None:intergenic | 45.0% |
| AGCCGGCAAGTGTTTATGTT+TGG | + | chr1_1:5876499-5876518 | Msa0003360:intron | 45.0% | |
| GTGGCGCTCAAGTAGATATA+TGG | + | chr1_1:5876680-5876699 | Msa0003360:CDS | 45.0% | |
| TGTTGTTACCTCCTTTCTGC+AGG | + | chr1_1:5876790-5876809 | Msa0003360:intron | 45.0% | |
| !! | GCTAAGAGATTTGGTTCTCC+TGG | - | chr1_1:5876876-5876895 | None:intergenic | 45.0% |
| !! | GCTGAGCTTGCTAAGAGATT+TGG | - | chr1_1:5876885-5876904 | None:intergenic | 45.0% |
| ATCTCTTAGCAAGCTCAGCT+AGG | + | chr1_1:5876886-5876905 | Msa0003360:CDS | 45.0% | |
| ACACGGGTAAGGATTTGGAA+GGG | - | chr1_1:5877120-5877139 | None:intergenic | 45.0% | |
| ! | TACTATCTGAGACACGGGTA+AGG | - | chr1_1:5877131-5877150 | None:intergenic | 45.0% |
| !! | GAGAGTACTATCTGAGACAC+GGG | - | chr1_1:5877136-5877155 | None:intergenic | 45.0% |
| !! | GGAGAGTACTATCTGAGACA+CGG | - | chr1_1:5877137-5877156 | None:intergenic | 45.0% |
| GGGAATCATGAGAGAGACTA+GGG | - | chr1_1:5877175-5877194 | None:intergenic | 45.0% | |
| TGGGAATCATGAGAGAGACT+AGG | - | chr1_1:5877176-5877195 | None:intergenic | 45.0% | |
| GAGTTAACGGAATTGCCAGA+TGG | - | chr1_1:5877224-5877243 | None:intergenic | 45.0% | |
| TGCAGTTACGAAATGTGCCA+AGG | - | chr1_1:5877702-5877721 | None:intergenic | 45.0% | |
| ! | TTTGGCTTCACCCAATTTCC+TGG | - | chr1_1:5878052-5878071 | None:intergenic | 45.0% |
| GTGACAAATTCTCGACCAGT+TGG | - | chr1_1:5878208-5878227 | None:intergenic | 45.0% | |
| ACTGGTCGAGAATTTGTCAC+CGG | + | chr1_1:5878208-5878227 | Msa0003360:CDS | 45.0% | |
| CTGCTGTGACCACCATTATA+AGG | - | chr1_1:5878350-5878369 | None:intergenic | 45.0% | |
| ! | GCCAAAGCATCAGAACAACT+TGG | + | chr1_1:5878655-5878674 | Msa0003360:CDS | 45.0% |
| TGTGTGTGTGTGGAGAAAGA+CGG | - | chr1_1:5878703-5878722 | None:intergenic | 45.0% | |
| TTTGTGTGTGTGTGTGTGTG+TGG | - | chr1_1:5878713-5878732 | None:intergenic | 45.0% | |
| ! | GAAGAAGCATGACTATCACG+AGG | + | chr1_1:5878930-5878949 | Msa0003360:CDS | 45.0% |
| AGGCCATAAAGAAACGCTAC+AGG | + | chr1_1:5878950-5878969 | Msa0003360:CDS | 45.0% | |
| GTGCCTGTAGCGTTTCTTTA+TGG | - | chr1_1:5878956-5878975 | None:intergenic | 45.0% | |
| ! | CTTTGTTGTAACACTCCCTG+GGG | - | chr1_1:5879106-5879125 | None:intergenic | 45.0% |
| ! | GCTTTGTTGTAACACTCCCT+GGG | - | chr1_1:5879107-5879126 | None:intergenic | 45.0% |
| GTGTTACAACAAAGCCGTTG+CGG | + | chr1_1:5879112-5879131 | Msa0003360:CDS | 45.0% | |
| TGTTACAACAAAGCCGTTGC+GGG | + | chr1_1:5879113-5879132 | Msa0003360:CDS | 45.0% | |
| !! | ACATCGCATAACATCGGCTC+CGG | + | chr1_1:5873135-5873154 | Msa0003360:five_prime_UTR | 50.0% |
| TTAGGGTTCGGAATTGGCAG+AGG | - | chr1_1:5873171-5873190 | None:intergenic | 50.0% | |
| ACGGAGGAAGTAGCAATGAG+CGG | - | chr1_1:5873233-5873252 | None:intergenic | 50.0% | |
| CACACCTTTACAACGGCGAA+CGG | - | chr1_1:5873252-5873271 | None:intergenic | 50.0% | |
| AGAACGAAGCCAAGACCTTC+AGG | + | chr1_1:5873549-5873568 | Msa0003360:CDS | 50.0% | |
| TCTTCGTCCTCAAGAGAAGG+CGG | + | chr1_1:5873716-5873735 | Msa0003360:CDS | 50.0% | |
| TATTCCACCGCCTTCTCTTG+AGG | - | chr1_1:5873726-5873745 | None:intergenic | 50.0% | |
| GAACCAGACCCGTGTTTCAT+TGG | + | chr1_1:5874519-5874538 | Msa0003360:intron | 50.0% | |
| TGCCCCACTTATAAGGAGGT+TGG | - | chr1_1:5875429-5875448 | None:intergenic | 50.0% | |
| AGATGTGGGGGACAAAAAGG+AGG | - | chr1_1:5875607-5875626 | None:intergenic | 50.0% | |
| ! | TCCTTTTTGTCCCCCACATC+TGG | + | chr1_1:5875606-5875625 | Msa0003360:intron | 50.0% |
| AATGACACAGCCAGATGTGG+GGG | - | chr1_1:5875619-5875638 | None:intergenic | 50.0% | |
| GAATGACACAGCCAGATGTG+GGG | - | chr1_1:5875620-5875639 | None:intergenic | 50.0% | |
| CAGAATGACACAGCCAGATG+TGG | - | chr1_1:5875622-5875641 | None:intergenic | 50.0% | |
| ! | CACATCTGGCTGTGTCATTC+TGG | + | chr1_1:5875620-5875639 | Msa0003360:intron | 50.0% |
| ! | GGCCGCATTCTTGTTTCATG+TGG | + | chr1_1:5876205-5876224 | Msa0003360:CDS | 50.0% |
| GAGTCCCCAAAAGAAGCAAC+AGG | - | chr1_1:5876370-5876389 | None:intergenic | 50.0% | |
| !! | GCTTCTTTTGGGGACTCAGA+TGG | + | chr1_1:5876373-5876392 | Msa0003360:intron | 50.0% |
| ! | GAGGTGGAATTTTGTGCTGG+AGG | + | chr1_1:5876415-5876434 | Msa0003360:intron | 50.0% |
| TTAGCGCTGTTGATCACCAG+TGG | + | chr1_1:5876635-5876654 | Msa0003360:intron | 50.0% | |
| TAGCGCTGTTGATCACCAGT+GGG | + | chr1_1:5876636-5876655 | Msa0003360:intron | 50.0% | |
| GACACGGGTAAGGATTTGGA+AGG | - | chr1_1:5877121-5877140 | None:intergenic | 50.0% | |
| CTGAGACACGGGTAAGGATT+TGG | - | chr1_1:5877125-5877144 | None:intergenic | 50.0% | |
| AGGAGGAATGAAGAGGACGT+GGG | - | chr1_1:5877195-5877214 | None:intergenic | 50.0% | |
| GCAAGTGAGGAGGAATGAAG+AGG | - | chr1_1:5877202-5877221 | None:intergenic | 50.0% | |
| ATTCCTCCTCACTTGCCATC+TGG | + | chr1_1:5877206-5877225 | Msa0003360:intron | 50.0% | |
| GAATTGCCAGATGGCAAGTG+AGG | - | chr1_1:5877215-5877234 | None:intergenic | 50.0% | |
| TACGGATGGATACCCCAGTA+AGG | + | chr1_1:5877543-5877562 | Msa0003360:CDS | 50.0% | |
| GGCATGCAGGCAAATGAAGA+TGG | + | chr1_1:5878006-5878025 | Msa0003360:intron | 50.0% | |
| ! | CTTTGGCCTTCCAAAGTCTG+AGG | - | chr1_1:5878642-5878661 | None:intergenic | 50.0% |
| CCTGTGGCATCATCGTAAAC+AGG | - | chr1_1:5878894-5878913 | None:intergenic | 50.0% | |
| CCTGTTTACGATGATGCCAC+AGG | + | chr1_1:5878891-5878910 | Msa0003360:intron | 50.0% | |
| ! | TTTTCCCTCGGAAGAACCTG+TGG | - | chr1_1:5878910-5878929 | None:intergenic | 50.0% |
| !! | GGCTTTGTTGTAACACTCCC+TGG | - | chr1_1:5879108-5879127 | None:intergenic | 50.0% |
| GGTTCGGAATTGGCAGAGGA+TGG | - | chr1_1:5873167-5873186 | None:intergenic | 55.0% | |
| CAGGGGTTAGGGTTCGGAAT+TGG | - | chr1_1:5873177-5873196 | None:intergenic | 55.0% | |
| TGCACACAGGGGTTAGGGTT+CGG | - | chr1_1:5873183-5873202 | None:intergenic | 55.0% | |
| GAGGAAGTAGCAATGAGCGG+CGG | - | chr1_1:5873230-5873249 | None:intergenic | 55.0% | |
| TCCTCCGTTCGCCGTTGTAA+AGG | + | chr1_1:5873245-5873264 | Msa0003360:five_prime_UTR | 55.0% | |
| ACCTTTACAACGGCGAACGG+AGG | - | chr1_1:5873249-5873268 | None:intergenic | 55.0% | |
| !! | GGGTCTGGTTCGGTATGGTA+TGG | - | chr1_1:5874510-5874529 | None:intergenic | 55.0% |
| !! | AACACGGGTCTGGTTCGGTA+TGG | - | chr1_1:5874515-5874534 | None:intergenic | 55.0% |
| CCACCAATGAAACACGGGTC+TGG | - | chr1_1:5874525-5874544 | None:intergenic | 55.0% | |
| CCAGACCCGTGTTTCATTGG+TGG | + | chr1_1:5874522-5874541 | Msa0003360:intron | 55.0% | |
| TCTACTTGGACCCCTCTGCT+AGG | + | chr1_1:5874557-5874576 | Msa0003360:intron | 55.0% | |
| GCCAGATGTGGGGGACAAAA+AGG | - | chr1_1:5875610-5875629 | None:intergenic | 55.0% | |
| ACTAGTATAGAGAGGGGCGG+GGG | - | chr1_1:5875671-5875690 | None:intergenic | 55.0% | |
| CACTAGTATAGAGAGGGGCG+GGG | - | chr1_1:5875672-5875691 | None:intergenic | 55.0% | |
| GCACTAGTATAGAGAGGGGC+GGG | - | chr1_1:5875673-5875692 | None:intergenic | 55.0% | |
| GGCACTAGTATAGAGAGGGG+CGG | - | chr1_1:5875674-5875693 | None:intergenic | 55.0% | |
| CGGACTGTTTGTCAGTTCCC+TGG | + | chr1_1:5876142-5876161 | Msa0003360:CDS | 55.0% | |
| TGTCAGTTCCCTGGACACCA+AGG | + | chr1_1:5876151-5876170 | Msa0003360:CDS | 55.0% | |
| GCTGTTGATCACCAGTGGGA+CGG | + | chr1_1:5876640-5876659 | Msa0003360:CDS | 55.0% | |
| ATCTACTTGAGCGCCACCTG+TGG | - | chr1_1:5876677-5876696 | None:intergenic | 55.0% | |
| ACTGGCTGAGACCTGCAGAA+AGG | - | chr1_1:5876804-5876823 | None:intergenic | 55.0% | |
| GAGGAGGAATGAAGAGGACG+TGG | - | chr1_1:5877196-5877215 | None:intergenic | 55.0% | |
| TTGCCAGATGGCAAGTGAGG+AGG | - | chr1_1:5877212-5877231 | None:intergenic | 55.0% | |
| TGTGTCAAGTTCAGCGGCGA+TGG | + | chr1_1:5878583-5878602 | Msa0003360:CDS | 55.0% | |
| TGATGCCACAGGTTCTTCCG+AGG | + | chr1_1:5878902-5878921 | Msa0003360:intron | 55.0% | |
| GATGCCACAGGTTCTTCCGA+GGG | + | chr1_1:5878903-5878922 | Msa0003360:intron | 55.0% | |
| ! | TGGCAGAGGATGGTGCTAGC+CGG | - | chr1_1:5873157-5873176 | None:intergenic | 60.0% |
| GGTGGTGCACACAGGGGTTA+GGG | - | chr1_1:5873188-5873207 | None:intergenic | 60.0% | |
| ATTGGCGGTGGTGCACACAG+GGG | - | chr1_1:5873194-5873213 | None:intergenic | 60.0% | |
| GATTGGCGGTGGTGCACACA+GGG | - | chr1_1:5873195-5873214 | None:intergenic | 60.0% | |
| !! | GGTGAGCTGTGGTGGATTGG+CGG | - | chr1_1:5873209-5873228 | None:intergenic | 60.0% |
| TCGTCCTCAAGAGAAGGCGG+TGG | + | chr1_1:5873719-5873738 | Msa0003360:CDS | 60.0% | |
| CTAGTATAGAGAGGGGCGGG+GGG | - | chr1_1:5875670-5875689 | None:intergenic | 60.0% | |
| !! | GCACAGCACCTTGGTGTCCA+GGG | - | chr1_1:5876162-5876181 | None:intergenic | 60.0% |
| !! | GGCCTGACAGCATCGACAGA+TGG | + | chr1_1:5876184-5876203 | Msa0003360:CDS | 60.0% |
| GGCCATCTGTCGATGCTGTC+AGG | - | chr1_1:5876189-5876208 | None:intergenic | 60.0% | |
| CAAAATGCTCGCCGTCCCAC+TGG | - | chr1_1:5876654-5876673 | None:intergenic | 60.0% | |
| ! | GACGGCGAGCATTTTGCCAC+AGG | + | chr1_1:5876658-5876677 | Msa0003360:CDS | 60.0% |
| ! | GGCGAGCATTTTGCCACAGG+TGG | + | chr1_1:5876661-5876680 | Msa0003360:CDS | 60.0% |
| GGCTGAGACCTGCAGAAAGG+AGG | - | chr1_1:5876801-5876820 | None:intergenic | 60.0% | |
| AGGAAAGCTCACAGTGCCCC+AGG | + | chr1_1:5879087-5879106 | Msa0003360:CDS | 60.0% | |
| GGAAAGCTCACAGTGCCCCA+GGG | + | chr1_1:5879088-5879107 | Msa0003360:CDS | 60.0% | |
| CGGTGGTGCACACAGGGGTT+AGG | - | chr1_1:5873189-5873208 | None:intergenic | 65.0% | |
| ! | GGATTGGCGGTGGTGCACAC+AGG | - | chr1_1:5873196-5873215 | None:intergenic | 65.0% |
| !! | GAGCTGTGGTGGATTGGCGG+TGG | - | chr1_1:5873206-5873225 | None:intergenic | 65.0% |
| !! | GGCGGTGAGCTGTGGTGGAT+TGG | - | chr1_1:5873212-5873231 | None:intergenic | 65.0% |
| CAATGAGCGGCGGTGAGCTG+TGG | - | chr1_1:5873220-5873239 | None:intergenic | 65.0% | |
| !! | CGCACAGCACCTTGGTGTCC+AGG | - | chr1_1:5876163-5876182 | None:intergenic | 65.0% |
| !! | GGACACCAAGGTGCTGTGCG+AGG | + | chr1_1:5876163-5876182 | Msa0003360:CDS | 65.0% |
| TCAGGCCTCGCACAGCACCT+TGG | - | chr1_1:5876171-5876190 | None:intergenic | 65.0% | |
| TGAGCGGCGGTGAGCTGTGG+TGG | - | chr1_1:5873217-5873236 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5873086 | 5879519 | 5873086 | ID=Msa0003360;Name=Msa0003360 |
| chr1_1 | mRNA | 5873086 | 5879519 | 5873086 | ID=Msa0003360-mRNA-1;Parent=Msa0003360;Name=Msa0003360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=184|0.85|0.93|1|0.78|0.86|15|355|404 |
| chr1_1 | exon | 5873086 | 5873266 | 5873086 | ID=Msa0003360-mRNA-1:exon:1806;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5873502 | 5873570 | 5873502 | ID=Msa0003360-mRNA-1:exon:1807;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5873690 | 5873779 | 5873690 | ID=Msa0003360-mRNA-1:exon:1808;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5873900 | 5873972 | 5873900 | ID=Msa0003360-mRNA-1:exon:1809;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5875770 | 5875797 | 5875770 | ID=Msa0003360-mRNA-1:exon:1810;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5876141 | 5876239 | 5876141 | ID=Msa0003360-mRNA-1:exon:1811;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5876639 | 5876713 | 5876639 | ID=Msa0003360-mRNA-1:exon:1812;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5876812 | 5876907 | 5876812 | ID=Msa0003360-mRNA-1:exon:1813;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5877517 | 5877580 | 5877517 | ID=Msa0003360-mRNA-1:exon:1814;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5877832 | 5877885 | 5877832 | ID=Msa0003360-mRNA-1:exon:1815;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5878015 | 5878100 | 5878015 | ID=Msa0003360-mRNA-1:exon:1816;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5878186 | 5878246 | 5878186 | ID=Msa0003360-mRNA-1:exon:1817;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5878335 | 5878399 | 5878335 | ID=Msa0003360-mRNA-1:exon:1818;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5878576 | 5878681 | 5878576 | ID=Msa0003360-mRNA-1:exon:1819;Parent=Msa0003360-mRNA-1 |
| chr1_1 | exon | 5878913 | 5879519 | 5878913 | ID=Msa0003360-mRNA-1:exon:1820;Parent=Msa0003360-mRNA-1 |
| chr1_1 | five_prime_UTR | 5873086 | 5873266 | 5873086 | ID=Msa0003360-mRNA-1:five_prime_utr;Parent=Msa0003360-mRNA-1 |
| chr1_1 | five_prime_UTR | 5873502 | 5873504 | 5873502 | ID=Msa0003360-mRNA-1:five_prime_utr;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5873505 | 5873570 | 5873505 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5873690 | 5873779 | 5873690 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5873900 | 5873972 | 5873900 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5875770 | 5875797 | 5875770 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5876141 | 5876239 | 5876141 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5876639 | 5876713 | 5876639 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5876812 | 5876907 | 5876812 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5877517 | 5877580 | 5877517 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5877832 | 5877885 | 5877832 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5878015 | 5878100 | 5878015 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5878186 | 5878246 | 5878186 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5878335 | 5878399 | 5878335 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5878576 | 5878681 | 5878576 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | CDS | 5878913 | 5879164 | 5878913 | ID=Msa0003360-mRNA-1:cds;Parent=Msa0003360-mRNA-1 |
| chr1_1 | three_prime_UTR | 5879165 | 5879519 | 5879165 | ID=Msa0003360-mRNA-1:three_prime_utr;Parent=Msa0003360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
