Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146580 | sp|Q5ZLK1|DCA13_CHICK | 45.618 | 445 | 201 | 2 | 1 | 404 | 1 | 445 | 2.03e-146 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146580 | G7I5C2 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003360 | Msa0146580 | 0.925318 | 2.158356e-90 | -8.615850e-47 |
| Msa0027590 | Msa0146580 | 0.804686 | 1.917652e-49 | -8.615850e-47 |
| Msa0040220 | Msa0146580 | 0.821681 | 3.547837e-53 | -8.615850e-47 |
| Msa0050860 | Msa0146580 | 0.932206 | 1.205638e-94 | -8.615850e-47 |
| Msa0079590 | Msa0146580 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0113920 | Msa0146580 | 0.807894 | 4.044667e-50 | -8.615850e-47 |
| Msa0146580 | Msa0191450 | 0.803044 | 4.206945e-49 | -8.615850e-47 |
| Msa0146580 | Msa0426090 | 0.839669 | 1.380252e-57 | -8.615850e-47 |
| Msa0146580 | Msa0426250 | 0.816338 | 5.821100e-52 | -8.615850e-47 |
| Msa0146580 | Msa0472480 | 0.841155 | 5.641108e-58 | -8.615850e-47 |
| Msa0146580 | Msa0475810 | 0.838690 | 2.475588e-57 | -8.615850e-47 |
| Msa0146580 | Msa0717380 | 0.805003 | 1.646109e-49 | -8.615850e-47 |
| Msa0146580 | Msa0758420 | 0.821468 | 3.973239e-53 | -8.615850e-47 |
| Msa0146580 | Msa0788380 | 0.805848 | 1.094701e-49 | -8.615850e-47 |
| Msa0146580 | Msa0799830 | 0.815759 | 7.841169e-52 | -8.615850e-47 |
| Msa0146580 | Msa1040160 | 0.825636 | 4.208147e-54 | -8.615850e-47 |
| Msa0146580 | Msa1041680 | 0.821008 | 5.071556e-53 | -8.615850e-47 |
| Msa0146580 | Msa1083370 | 0.830248 | 3.268332e-55 | -8.615850e-47 |
| Msa0146580 | Msa1166570 | 0.825828 | 3.787744e-54 | -8.615850e-47 |
| Msa0146580 | Msa1227080 | 0.901624 | 2.219974e-78 | -8.615850e-47 |
| Msa0146580 | Msa1237040 | 0.804245 | 2.369982e-49 | -8.615850e-47 |
| Msa0146580 | Msa1258540 | 0.814068 | 1.859973e-51 | -8.615850e-47 |
| Msa0146580 | Msa1278130 | 0.822400 | 2.417184e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146580 | MtrunA17_Chr1g0155601 | 88.717 | 452 | 3 | 2 | 1 | 404 | 1 | 452 | 0.0 | 789 |
| Msa0146580 | MtrunA17_Chr1g0185501 | 24.206 | 252 | 147 | 9 | 95 | 311 | 26 | 268 | 7.16e-13 | 68.9 |
| Msa0146580 | MtrunA17_Chr4g0067151 | 22.553 | 235 | 146 | 6 | 91 | 315 | 73 | 281 | 3.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146580 | AT4G28450.1 | 71.460 | 452 | 81 | 2 | 1 | 404 | 1 | 452 | 0.0 | 680 |
| Msa0146580 | AT4G02730.1 | 24.221 | 289 | 168 | 11 | 56 | 319 | 31 | 293 | 2.74e-15 | 77.0 |
| Msa0146580 | AT2G22040.1 | 25.940 | 266 | 148 | 10 | 73 | 318 | 58 | 294 | 3.44e-11 | 64.3 |
| Msa0146580 | AT3G49660.1 | 20.332 | 241 | 156 | 7 | 89 | 319 | 64 | 278 | 4.37e-11 | 63.9 |
| Msa0146580 | AT3G49660.1 | 24.454 | 229 | 151 | 6 | 95 | 319 | 23 | 233 | 4.53e-11 | 63.9 |
Find 132 sgRNAs with CRISPR-Local
Find 432 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACCACTGTAAAATTTA+TGG | 0.088636 | 1_4:+6272605 | None:intergenic |
| GAAATTGAAAAGAAAGATTT+AGG | 0.137973 | 1_4:-6271022 | Msa0146580:three_prime_UTR |
| TAGTTATGATTCCAGGAAAT+TGG | 0.212222 | 1_4:-6272436 | Msa0146580:CDS |
| GTGCCTGTAGCGTTTCTTTA+TGG | 0.227292 | 1_4:+6271521 | None:intergenic |
| CGGTGGTGCACACAGGGGTT+AGG | 0.235953 | 1_4:+6277284 | None:intergenic |
| CTGCTGTGACCACCATTATA+AGG | 0.244087 | 1_4:+6272127 | None:intergenic |
| CTTACCACTGTAAAATTTAT+GGG | 0.253800 | 1_4:+6272606 | None:intergenic |
| TGTGCCAATGCAAGAAATTT+TGG | 0.255111 | 1_4:-6271150 | Msa0146580:three_prime_UTR |
| TCCAAGTTGTTCTGATGCTT+TGG | 0.306051 | 1_4:+6271818 | None:intergenic |
| CCATCCATTGCTCCTATAAA+AGG | 0.319195 | 1_4:+6276563 | None:intergenic |
| GATGGAAGTTATGTAATTTC+AGG | 0.319874 | 1_4:-6271873 | Msa0146580:CDS |
| TTTGGCTTCACCCAATTTCC+TGG | 0.320487 | 1_4:+6272425 | None:intergenic |
| CCAAGCTATAGAATTGGTTT+TGG | 0.322631 | 1_4:+6272641 | None:intergenic |
| TGGGCTTGCTCTCTATGTTT+AGG | 0.331401 | 1_4:+6277387 | None:intergenic |
| TGTTTGCAGATATTCGTCTT+TGG | 0.331813 | 1_4:-6274714 | Msa0146580:intron |
| CCCCATACGAAACTATTTAC+TGG | 0.333180 | 1_4:+6273655 | None:intergenic |
| GCTGAGCTTGCTAAGAGATT+TGG | 0.339438 | 1_4:+6273592 | None:intergenic |
| GTTTGCAGATATTCGTCTTT+GGG | 0.344881 | 1_4:-6274713 | Msa0146580:intron |
| TTCTCTTGAGGACGAAGAAT+TGG | 0.350486 | 1_4:+6276759 | None:intergenic |
| GGCTTTGTTGTAACACTCCC+TGG | 0.358324 | 1_4:+6271369 | None:intergenic |
| GTGATCTTTATGAACACATT+TGG | 0.359886 | 1_4:+6272407 | None:intergenic |
| GTGGCGCTCAAGTAGATATA+TGG | 0.375359 | 1_4:-6273794 | Msa0146580:CDS |
| AGAACGAAGCCAAGACCTTC+AGG | 0.381853 | 1_4:-6276921 | Msa0146580:intron |
| CGCACAGCACCTTGGTGTCC+AGG | 0.391819 | 1_4:+6274315 | None:intergenic |
| AAATTGAAAAGAAAGATTTA+GGG | 0.397767 | 1_4:-6271021 | Msa0146580:three_prime_UTR |
| TACACCAAAATTTCTTGCAT+TGG | 0.399910 | 1_4:+6271146 | None:intergenic |
| AAAGAAGAAGCCTTGTATAT+TGG | 0.402396 | 1_4:+6271453 | None:intergenic |
| GCATAAATCTGTATGATTTA+CGG | 0.406292 | 1_4:-6272949 | Msa0146580:CDS |
| TGGATTCCAAGCTATAGAAT+TGG | 0.408247 | 1_4:+6272635 | None:intergenic |
| GTAAAATTTATGGGTTCCAT+TGG | 0.408971 | 1_4:+6272615 | None:intergenic |
| GCTAAGAGATTTGGTTCTCC+TGG | 0.410192 | 1_4:+6273601 | None:intergenic |
| CAGGGGTTAGGGTTCGGAAT+TGG | 0.410437 | 1_4:+6277296 | None:intergenic |
| ACTGCTATAGTTATGATTCC+AGG | 0.417229 | 1_4:-6272443 | Msa0146580:CDS |
| ATGATACTAACCTCAGACTT+TGG | 0.421940 | 1_4:-6271845 | Msa0146580:CDS |
| GAAGAATTGGATCGTAATTA+CGG | 0.423302 | 1_4:+6276772 | None:intergenic |
| GGATTGGCGGTGGTGCACAC+AGG | 0.426225 | 1_4:+6277277 | None:intergenic |
| AGTTATGATTCCAGGAAATT+GGG | 0.427023 | 1_4:-6272435 | Msa0146580:CDS |
| AATGAATTACCTGAAGGTCT+TGG | 0.427414 | 1_4:+6276912 | None:intergenic |
| GGTGGTGCACACAGGGGTTA+GGG | 0.430634 | 1_4:+6277285 | None:intergenic |
| AGGAAAGCTCACAGTGCCCC+AGG | 0.436680 | 1_4:-6271387 | Msa0146580:CDS |
| GGCCATCTGTCGATGCTGTC+AGG | 0.439615 | 1_4:+6274289 | None:intergenic |
| GGCGGTGAGCTGTGGTGGAT+TGG | 0.439996 | 1_4:+6277261 | None:intergenic |
| TGCACACAGGGGTTAGGGTT+CGG | 0.441760 | 1_4:+6277290 | None:intergenic |
| GTGAGAATCTTCCCTTATAA+TGG | 0.443627 | 1_4:-6272139 | Msa0146580:CDS |
| GGTTGAAGGTGAACTGAACT+AGG | 0.444004 | 1_4:+6277355 | None:intergenic |
| TGCTGTGACCACCATTATAA+GGG | 0.445472 | 1_4:+6272128 | None:intergenic |
| TCCTCCGTTCGCCGTTGTAA+AGG | 0.448837 | 1_4:-6277225 | Msa0146580:intron |
| TGTTACAACAAAGCCGTTGC+GGG | 0.449730 | 1_4:-6271361 | Msa0146580:CDS |
| GAAGCCTTGTATATTGGTCT+TGG | 0.453460 | 1_4:+6271459 | None:intergenic |
| AAATCTTCAATTCAATCAAA+AGG | 0.456369 | 1_4:-6271044 | Msa0146580:three_prime_UTR |
| TAGATATATGGAATCACAAC+AGG | 0.461587 | 1_4:-6273782 | Msa0146580:intron |
| GATTGGCGGTGGTGCACACA+GGG | 0.462317 | 1_4:+6277278 | None:intergenic |
| TGTAGATGCAATTTCGTGTA+TGG | 0.462793 | 1_4:-6276537 | Msa0146580:CDS |
| CCAAAACCAATTCTATAGCT+TGG | 0.466953 | 1_4:-6272641 | Msa0146580:CDS |
| CTTGCAATACGGTTAACTTC+AGG | 0.470144 | 1_4:+6271495 | None:intergenic |
| TGCTCTCAATGCAGTGAAGT+TGG | 0.475144 | 1_4:-6276718 | Msa0146580:CDS |
| GATATTGACTACTCACCAAC+TGG | 0.479569 | 1_4:-6272284 | Msa0146580:CDS |
| ATTTCTGTCCGCTTTAATCC+AGG | 0.483582 | 1_4:-6273619 | Msa0146580:CDS |
| TGTGTCAAGTTCAGCGGCGA+TGG | 0.483997 | 1_4:-6271891 | Msa0146580:CDS |
| AACTGTTCTATCATAAGATC+CGG | 0.487930 | 1_4:+6272247 | None:intergenic |
| AGCCAGTAAATAGTTTCGTA+TGG | 0.495618 | 1_4:-6273657 | Msa0146580:CDS |
| ATAATTCTTCTTTCCCGCAA+CGG | 0.501061 | 1_4:+6271348 | None:intergenic |
| CAATGCAGTGAAGTTGGATA+AGG | 0.505068 | 1_4:-6276712 | Msa0146580:intron |
| TGAGCGGCGGTGAGCTGTGG+TGG | 0.509257 | 1_4:+6277256 | None:intergenic |
| CAAAGTTATATCACGCTCTA+CGG | 0.510796 | 1_4:-6276957 | Msa0146580:CDS |
| GCTTTGTTGTAACACTCCCT+GGG | 0.513233 | 1_4:+6271370 | None:intergenic |
| GGCCGCATTCTTGTTTCATG+TGG | 0.514047 | 1_4:-6274270 | Msa0146580:CDS |
| TTAGGGTTCGGAATTGGCAG+AGG | 0.514464 | 1_4:+6277302 | None:intergenic |
| CAAAATGCTCGCCGTCCCAC+TGG | 0.516418 | 1_4:+6273823 | None:intergenic |
| GCCAGTAAATAGTTTCGTAT+GGG | 0.521326 | 1_4:-6273656 | Msa0146580:CDS |
| GGTGAGCTGTGGTGGATTGG+CGG | 0.521355 | 1_4:+6277264 | None:intergenic |
| AGTAAGGAAAATGATAATGA+TGG | 0.524836 | 1_4:-6272915 | Msa0146580:intron |
| CGGACTGTTTGTCAGTTCCC+TGG | 0.530233 | 1_4:-6274333 | Msa0146580:CDS |
| TCAGGCCTCGCACAGCACCT+TGG | 0.533050 | 1_4:+6274307 | None:intergenic |
| CAATATATATATTTATGAAG+TGG | 0.537187 | 1_4:-6271277 | Msa0146580:three_prime_UTR |
| ATTATCAGAGAAGTTGAGTG+AGG | 0.539555 | 1_4:-6271330 | Msa0146580:exon |
| TTCTATAGCTTGGAATCCAA+TGG | 0.540411 | 1_4:-6272631 | Msa0146580:CDS |
| AGTGTCTATGCCTTGCAATA+CGG | 0.542864 | 1_4:+6271484 | None:intergenic |
| GGTTCGGAATTGGCAGAGGA+TGG | 0.545542 | 1_4:+6277306 | None:intergenic |
| CCGATGTTATGCGAGGTTGA+AGG | 0.546222 | 1_4:+6277341 | None:intergenic |
| TATTCCACCGCCTTCTCTTG+AGG | 0.547207 | 1_4:+6276747 | None:intergenic |
| GGCCTGACAGCATCGACAGA+TGG | 0.550525 | 1_4:-6274291 | Msa0146580:CDS |
| TTTCGTATGGGGATCAGATA+CGG | 0.552827 | 1_4:-6273644 | Msa0146580:CDS |
| GGCATGCAGGCAAATGAAGA+TGG | 0.559590 | 1_4:-6272468 | Msa0146580:intron |
| CTTTGGCCTTCCAAAGTCTG+AGG | 0.561645 | 1_4:+6271835 | None:intergenic |
| GCCAAAGCATCAGAACAACT+TGG | 0.571500 | 1_4:-6271819 | Msa0146580:CDS |
| TACGGATGGATACCCCAGTA+AGG | 0.575067 | 1_4:-6272931 | Msa0146580:CDS |
| ACCTCGCATAACATCGGCTC+CGG | 0.576790 | 1_4:-6277335 | Msa0146580:five_prime_UTR |
| TGGCAGAGGATGGTGCTAGC+CGG | 0.578600 | 1_4:+6277316 | None:intergenic |
| GTGTTACAACAAAGCCGTTG+CGG | 0.579532 | 1_4:-6271362 | Msa0146580:CDS |
| GAGCTGTGGTGGATTGGCGG+TGG | 0.580519 | 1_4:+6277267 | None:intergenic |
| CAATGAGCGGCGGTGAGCTG+TGG | 0.581863 | 1_4:+6277253 | None:intergenic |
| GCACAGCACCTTGGTGTCCA+GGG | 0.584408 | 1_4:+6274316 | None:intergenic |
| GGACACCAAGGTGCTGTGCG+AGG | 0.590155 | 1_4:-6274312 | Msa0146580:CDS |
| TACTAACCTCAGACTTTGGA+AGG | 0.594251 | 1_4:-6271841 | Msa0146580:CDS |
| AGGCCATAAAGAAACGCTAC+AGG | 0.594578 | 1_4:-6271524 | Msa0146580:CDS |
| CTTACCAAGACCAATATACA+AGG | 0.596333 | 1_4:-6271463 | Msa0146580:CDS |
| TAGCGCTGTTGATCACCAGT+GGG | 0.597150 | 1_4:-6273838 | Msa0146580:CDS |
| TTAGCGCTGTTGATCACCAG+TGG | 0.600322 | 1_4:-6273839 | Msa0146580:intron |
| TGTCAGTTCCCTGGACACCA+AGG | 0.601209 | 1_4:-6274324 | Msa0146580:CDS |
| CACACCTTTACAACGGCGAA+CGG | 0.605066 | 1_4:+6277221 | None:intergenic |
| GGAAAGCTCACAGTGCCCCA+GGG | 0.606954 | 1_4:-6271386 | Msa0146580:CDS |
| AATTCTTCGTCCTCAAGAGA+AGG | 0.607045 | 1_4:-6276757 | Msa0146580:CDS |
| CTGAAGTTAACCGTATTGCA+AGG | 0.608965 | 1_4:-6271494 | Msa0146580:CDS |
| ATCTCTTAGCAAGCTCAGCT+AGG | 0.612178 | 1_4:-6273588 | Msa0146580:intron |
| ATCATACTAAAAGAATGCAA+AGG | 0.613308 | 1_4:-6272096 | Msa0146580:intron |
| TCGTCCTCAAGAGAAGGCGG+TGG | 0.613718 | 1_4:-6276751 | Msa0146580:CDS |
| GTGACAAATTCTCGACCAGT+TGG | 0.617530 | 1_4:+6272269 | None:intergenic |
| CCTTCAACCTCGCATAACAT+CGG | 0.617607 | 1_4:-6277341 | Msa0146580:five_prime_UTR |
| TTGGTTCTCCTGGATTAAAG+CGG | 0.621177 | 1_4:+6273611 | None:intergenic |
| GTCTTTGGGATATAGCTGCT+AGG | 0.627694 | 1_4:-6274699 | Msa0146580:intron |
| TGATGCCACAGGTTCTTCCG+AGG | 0.628636 | 1_4:-6271572 | Msa0146580:intron |
| AGAATCTTCCCTTATAATGG+TGG | 0.629250 | 1_4:-6272136 | Msa0146580:CDS |
| ACCTTTACAACGGCGAACGG+AGG | 0.630519 | 1_4:+6277224 | None:intergenic |
| AAATCTGTATGATTTACGGA+TGG | 0.631713 | 1_4:-6272945 | Msa0146580:CDS |
| ATCTACTTGAGCGCCACCTG+TGG | 0.634797 | 1_4:+6273800 | None:intergenic |
| GATGCCACAGGTTCTTCCGA+GGG | 0.636446 | 1_4:-6271571 | Msa0146580:intron |
| ATATATGCACACCTTTACAA+CGG | 0.636759 | 1_4:+6277214 | None:intergenic |
| CCAGTAAATAGTTTCGTATG+GGG | 0.638122 | 1_4:-6273655 | Msa0146580:CDS |
| GCTGTTGATCACCAGTGGGA+CGG | 0.644849 | 1_4:-6273834 | Msa0146580:CDS |
| GTATTCTGTGTCAAGTTCAG+CGG | 0.646929 | 1_4:-6271897 | Msa0146580:CDS |
| ACTGGTCGAGAATTTGTCAC+CGG | 0.649767 | 1_4:-6272266 | Msa0146580:CDS |
| AGTTATATCACGCTCTACGG+AGG | 0.657642 | 1_4:-6276954 | Msa0146580:CDS |
| ATTGGCGGTGGTGCACACAG+GGG | 0.672431 | 1_4:+6277279 | None:intergenic |
| GCCGGAGCCGATGTTATGCG+AGG | 0.673465 | 1_4:+6277334 | None:intergenic |
| CAATACGGTTAACTTCAGGA+AGG | 0.681036 | 1_4:+6271499 | None:intergenic |
| TCTTCGTCCTCAAGAGAAGG+CGG | 0.682148 | 1_4:-6276754 | Msa0146580:CDS |
| TTCCACATGAAACAAGAATG+CGG | 0.692579 | 1_4:+6274268 | None:intergenic |
| ACGGAGGAAGTAGCAATGAG+CGG | 0.696929 | 1_4:+6277240 | None:intergenic |
| CTTTGTTGTAACACTCCCTG+GGG | 0.701621 | 1_4:+6271371 | None:intergenic |
| GAGGAAGTAGCAATGAGCGG+CGG | 0.735597 | 1_4:+6277243 | None:intergenic |
| GAAGAAGCATGACTATCACG+AGG | 0.736007 | 1_4:-6271544 | Msa0146580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATCATTTTGTTAT+AGG | + | chr1_4:6271267-6271286 | None:intergenic | 10.0% |
| !!! | TTTTAGTTTTTTTTTTTTTG+TGG | - | chr1_4:6271757-6271776 | Msa0146580:intron | 10.0% |
| !! | AAATAAATAAGAAATTAGAA+TGG | - | chr1_4:6272297-6272316 | Msa0146580:intron | 10.0% |
| !!! | TAATTATGATATATTTTAAC+TGG | - | chr1_4:6272746-6272765 | Msa0146580:intron | 10.0% |
| !!! | AATTATGATATATTTTAACT+GGG | - | chr1_4:6272747-6272766 | Msa0146580:intron | 10.0% |
| !!! | TTTTTTGTAAAATTTTCTTT+TGG | - | chr1_4:6274328-6274347 | Msa0146580:CDS | 10.0% |
| !!! | TAGTTTTATTTAGTTAAATA+TGG | - | chr1_4:6275192-6275211 | Msa0146580:intron | 10.0% |
| !! | TAATCAAAAGAAAAATAATA+AGG | + | chr1_4:6275559-6275578 | None:intergenic | 10.0% |
| !!! | TATTGTGAATATGATTTTAT+AGG | - | chr1_4:6271698-6271717 | Msa0146580:intron | 15.0% |
| !!! | ATATGTATAAACTATTTCTA+TGG | - | chr1_4:6271953-6271972 | Msa0146580:intron | 15.0% |
| !!! | TTTTAAATCAATCTATCAAA+TGG | + | chr1_4:6272267-6272286 | None:intergenic | 15.0% |
| !!! | GATTGATTTAAAATGATATT+TGG | - | chr1_4:6272274-6272293 | Msa0146580:CDS | 15.0% |
| !!! | ACAATTTTCAAAATATAAGT+TGG | - | chr1_4:6272634-6272653 | Msa0146580:CDS | 15.0% |
| !!! | ACAAGATTATTTTAGTTTAA+AGG | - | chr1_4:6272707-6272726 | Msa0146580:intron | 15.0% |
| !! | AATTTACCAAAATTAAAGTT+TGG | + | chr1_4:6272885-6272904 | None:intergenic | 15.0% |
| !! | GTTAATATAGTAGTTTAAAA+CGG | + | chr1_4:6273613-6273632 | None:intergenic | 15.0% |
| !!! | CATTTAAAATTGAAAGAAAA+AGG | + | chr1_4:6273697-6273716 | None:intergenic | 15.0% |
| !!! | TAATATTGTCATTTTGTTTA+TGG | - | chr1_4:6273997-6274016 | Msa0146580:intron | 15.0% |
| !! | GATTATATAATTAACACTAA+GGG | - | chr1_4:6274841-6274860 | Msa0146580:intron | 15.0% |
| !! | ATTATATAATTAACACTAAG+GGG | - | chr1_4:6274842-6274861 | Msa0146580:intron | 15.0% |
| !!! | GAACTGATTTATATTTATTT+TGG | - | chr1_4:6275263-6275282 | Msa0146580:intron | 15.0% |
| !!! | ATTATCATTAGTTTAAATCA+TGG | - | chr1_4:6275485-6275504 | Msa0146580:intron | 15.0% |
| !! | TTGTAATTATTATTAAACTG+AGG | - | chr1_4:6275532-6275551 | Msa0146580:intron | 15.0% |
| !! | TAAGAATATTTCAATAAACT+CGG | + | chr1_4:6276403-6276422 | None:intergenic | 15.0% |
| !! | CAATATATATATTTATGAAG+TGG | - | chr1_4:6277084-6277103 | Msa0146580:intron | 15.0% |
| !! | AAATTGAAAAGAAAGATTTA+GGG | - | chr1_4:6277340-6277359 | Msa0146580:five_prime_UTR | 15.0% |
| !! | TTCACAATAAAAAACACATA+GGG | + | chr1_4:6271687-6271706 | None:intergenic | 20.0% |
| !! | ATTCACAATAAAAAACACAT+AGG | + | chr1_4:6271688-6271707 | None:intergenic | 20.0% |
| !!! | TGAATATGATTTTATAGGAT+AGG | - | chr1_4:6271703-6271722 | Msa0146580:intron | 20.0% |
| !! | AAAAATTTAGAAGAGAAGAT+AGG | - | chr1_4:6272228-6272247 | Msa0146580:intron | 20.0% |
| !! | AAAATTTAGAAGAGAAGATA+GGG | - | chr1_4:6272229-6272248 | Msa0146580:intron | 20.0% |
| !! | ATAAGAAATTAGAATGGTTA+TGG | - | chr1_4:6272303-6272322 | Msa0146580:intron | 20.0% |
| !!! | TTCTAGTTAACATTTCTTTA+AGG | - | chr1_4:6272914-6272933 | Msa0146580:intron | 20.0% |
| !! | TCTAGTTAACATTTCTTTAA+GGG | - | chr1_4:6272915-6272934 | Msa0146580:intron | 20.0% |
| !!! | ATCTAAACAATTTTGTTTAC+AGG | + | chr1_4:6272990-6273009 | None:intergenic | 20.0% |
| !!! | TTTGAAGATTCTTTAGTTTT+GGG | + | chr1_4:6273158-6273177 | None:intergenic | 20.0% |
| !!! | ATTTGAAGATTCTTTAGTTT+TGG | + | chr1_4:6273159-6273178 | None:intergenic | 20.0% |
| !! | TAAAGAATCTTCAAATTACA+GGG | - | chr1_4:6273163-6273182 | Msa0146580:intron | 20.0% |
| !! | CCAGTAAAAAAAAATTGTTT+CGG | + | chr1_4:6273195-6273214 | None:intergenic | 20.0% |
| !!! | CGAAACAATTTTTTTTTACT+GGG | - | chr1_4:6273193-6273212 | Msa0146580:intron | 20.0% |
| !!! | GAAACAATTTTTTTTTACTG+GGG | - | chr1_4:6273194-6273213 | Msa0146580:intron | 20.0% |
| !!! | AAACAATTTTTTTTTACTGG+GGG | - | chr1_4:6273195-6273214 | Msa0146580:intron | 20.0% |
| !!! | TTTAACCTCTAAATGTTTTA+TGG | + | chr1_4:6273438-6273457 | None:intergenic | 20.0% |
| !!! | TTAGCAATTTTAAATGTTCT+GGG | - | chr1_4:6273768-6273787 | Msa0146580:intron | 20.0% |
| !!! | ACTTTTATCATATAAGAAAC+AGG | + | chr1_4:6273830-6273849 | None:intergenic | 20.0% |
| !!! | AATACATCAAACTTTTGTTA+TGG | - | chr1_4:6273857-6273876 | Msa0146580:intron | 20.0% |
| !! | GTTATGGATAAGAAAAATAT+TGG | - | chr1_4:6273873-6273892 | Msa0146580:intron | 20.0% |
| !! | ATAAGAAAAATATTGGTGAA+TGG | - | chr1_4:6273880-6273899 | Msa0146580:intron | 20.0% |
| !! | AGCTTATTTAATTAGACTTT+AGG | - | chr1_4:6273912-6273931 | Msa0146580:intron | 20.0% |
| !!! | TTTTGTTTATGGAAAAAAGA+CGG | - | chr1_4:6274008-6274027 | Msa0146580:intron | 20.0% |
| !!! | TTTTTATGCTTACAAAACAT+TGG | - | chr1_4:6274481-6274500 | Msa0146580:intron | 20.0% |
| !! | TGCTAAAAATAGAATAAACA+CGG | - | chr1_4:6274818-6274837 | Msa0146580:intron | 20.0% |
| !! | GGATTATATAATTAACACTA+AGG | - | chr1_4:6274840-6274859 | Msa0146580:intron | 20.0% |
| !! | ATGTTAATCATCTTACTTAT+AGG | - | chr1_4:6275221-6275240 | Msa0146580:intron | 20.0% |
| !! | AGGAAGGAATTTATTTAATA+AGG | - | chr1_4:6275241-6275260 | Msa0146580:intron | 20.0% |
| !! | ACTCACGAATATAATATATT+TGG | + | chr1_4:6275666-6275685 | None:intergenic | 20.0% |
| !! | TAGTGATATTTAAATTCTTG+TGG | - | chr1_4:6275858-6275877 | Msa0146580:intron | 20.0% |
| !! | ATTAACAATTTCTCATTTGT+AGG | - | chr1_4:6276200-6276219 | Msa0146580:intron | 20.0% |
| !! | AATATTCTTATCATGCTTTA+TGG | - | chr1_4:6276413-6276432 | Msa0146580:intron | 20.0% |
| !!! | TTGTTATTCAATTAGTTAGT+TGG | - | chr1_4:6276692-6276711 | Msa0146580:intron | 20.0% |
| !! | AAATCTTCAATTCAATCAAA+AGG | - | chr1_4:6277317-6277336 | Msa0146580:five_prime_UTR | 20.0% |
| !! | GAAATTGAAAAGAAAGATTT+AGG | - | chr1_4:6277339-6277358 | Msa0146580:five_prime_UTR | 20.0% |
| !! | AAACAAAAACTATTTCAAAC+AGG | + | chr1_4:6277366-6277385 | None:intergenic | 20.0% |
| !! | GAATAGATTTTACATAAGCA+AGG | + | chr1_4:6271245-6271264 | None:intergenic | 25.0% |
| ! | AGTGAAATATTCTCTCTTTA+TGG | - | chr1_4:6271357-6271376 | Msa0146580:CDS | 25.0% |
| ! | TGAAGAGGTTTAACAATAAA+GGG | + | chr1_4:6271494-6271513 | None:intergenic | 25.0% |
| ! | ATGAAGAGGTTTAACAATAA+AGG | + | chr1_4:6271495-6271514 | None:intergenic | 25.0% |
| ! | ATGAATTAAGAAGAATGAAG+AGG | + | chr1_4:6271509-6271528 | None:intergenic | 25.0% |
| ! | ACACGCTAAAAAAAACAAAA+GGG | + | chr1_4:6271566-6271585 | None:intergenic | 25.0% |
| !! | ATTTTTGCTAGACCTTTTAT+AGG | - | chr1_4:6271786-6271805 | Msa0146580:intron | 25.0% |
| ! | ATATCTCTTTCAATTGACTA+GGG | + | chr1_4:6271857-6271876 | None:intergenic | 25.0% |
| ! | AATATCTCTTTCAATTGACT+AGG | + | chr1_4:6271858-6271877 | None:intergenic | 25.0% |
| ! | ATTAAATCGTTCATCCAAAA+AGG | + | chr1_4:6271926-6271945 | None:intergenic | 25.0% |
| ! | ATTGAAGCAACATGATTAAA+GGG | + | chr1_4:6272154-6272173 | None:intergenic | 25.0% |
| ! | AATTGAAGCAACATGATTAA+AGG | + | chr1_4:6272155-6272174 | None:intergenic | 25.0% |
| ! | TATTGTTGTACACTTGATAT+AGG | - | chr1_4:6272200-6272219 | Msa0146580:intron | 25.0% |
| ! | TGAACTCCTGAAATTAAAAT+CGG | + | chr1_4:6272664-6272683 | None:intergenic | 25.0% |
| ! | TAAAATAATCTTGTTCTTCC+TGG | + | chr1_4:6272701-6272720 | None:intergenic | 25.0% |
| !! | TCACTCAAGAAAAAGAATTT+TGG | + | chr1_4:6272787-6272806 | None:intergenic | 25.0% |
| ! | ATCAGTTAACTATTAGATAG+AGG | - | chr1_4:6272827-6272846 | Msa0146580:intron | 25.0% |
| !!! | AAACAGCCAAACTTTAATTT+TGG | - | chr1_4:6272876-6272895 | Msa0146580:intron | 25.0% |
| !!! | AAACAATTTTGTTTACAGGA+GGG | + | chr1_4:6272986-6273005 | None:intergenic | 25.0% |
| !!! | TAAACAATTTTGTTTACAGG+AGG | + | chr1_4:6272987-6273006 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTTGACGTCATA+AGG | + | chr1_4:6273049-6273068 | None:intergenic | 25.0% |
| ! | ACGTCAAATTTCAAAATTGA+AGG | - | chr1_4:6273053-6273072 | Msa0146580:intron | 25.0% |
| ! | AAAATCGATGATATGATAGA+GGG | + | chr1_4:6273113-6273132 | None:intergenic | 25.0% |
| ! | CTAAAGAATCTTCAAATTAC+AGG | - | chr1_4:6273162-6273181 | Msa0146580:intron | 25.0% |
| !!! | CCGAAACAATTTTTTTTTAC+TGG | - | chr1_4:6273192-6273211 | Msa0146580:intron | 25.0% |
| ! | ATGCTACAAAGTTAAAGAAA+GGG | + | chr1_4:6273266-6273285 | None:intergenic | 25.0% |
| ! | AATGCTACAAAGTTAAAGAA+AGG | + | chr1_4:6273267-6273286 | None:intergenic | 25.0% |
| ! | TTTCATGCTTATTATGAAAG+TGG | - | chr1_4:6273352-6273371 | Msa0146580:intron | 25.0% |
| ! | GACAGTTGTTTAAACTATAA+TGG | - | chr1_4:6273374-6273393 | Msa0146580:intron | 25.0% |
| ! | AACAACCATAAAACATTTAG+AGG | - | chr1_4:6273430-6273449 | Msa0146580:intron | 25.0% |
| !! | CTTAGCAATTTTAAATGTTC+TGG | - | chr1_4:6273767-6273786 | Msa0146580:intron | 25.0% |
| ! | TAATTAAATAAGCTGATGCA+TGG | + | chr1_4:6273906-6273925 | None:intergenic | 25.0% |
| ! | AGTAAAAGAAAAACGAAAAG+AGG | + | chr1_4:6274140-6274159 | None:intergenic | 25.0% |
| ! | GCTAAAAATAGAATAAACAC+GGG | - | chr1_4:6274819-6274838 | Msa0146580:intron | 25.0% |
| ! | TAATCATCTTACTTATAGGA+AGG | - | chr1_4:6275225-6275244 | Msa0146580:intron | 25.0% |
| !! | TTTTGATCTACTACTTACAT+TGG | - | chr1_4:6275316-6275335 | Msa0146580:intron | 25.0% |
| !!! | TTTTTTGTTTTTTCAGTGAC+AGG | - | chr1_4:6275388-6275407 | Msa0146580:intron | 25.0% |
| ! | GCATAAATCTGTATGATTTA+CGG | - | chr1_4:6275412-6275431 | Msa0146580:intron | 25.0% |
| !! | TCATTATCATTTTCCTTACT+GGG | + | chr1_4:6275446-6275465 | None:intergenic | 25.0% |
| !! | ATCATTATCATTTTCCTTAC+TGG | + | chr1_4:6275447-6275466 | None:intergenic | 25.0% |
| !! | AGTAAGGAAAATGATAATGA+TGG | - | chr1_4:6275446-6275465 | Msa0146580:intron | 25.0% |
| !!! | CTTTTGATTATACATATCCT+TGG | - | chr1_4:6275569-6275588 | Msa0146580:intron | 25.0% |
| !! | TTTTTCTGCTTCATATCTTT+TGG | - | chr1_4:6275632-6275651 | Msa0146580:intron | 25.0% |
| ! | CTTACCACTGTAAAATTTAT+GGG | + | chr1_4:6275758-6275777 | None:intergenic | 25.0% |
| ! | ACTTACCACTGTAAAATTTA+TGG | + | chr1_4:6275759-6275778 | None:intergenic | 25.0% |
| !! | TTCTTGTGGACAAATTTTAT+TGG | - | chr1_4:6275872-6275891 | Msa0146580:intron | 25.0% |
| ! | AGTAAGAAGATAAAATGACA+AGG | + | chr1_4:6276163-6276182 | None:intergenic | 25.0% |
| ! | ATCATACTAAAAGAATGCAA+AGG | - | chr1_4:6276265-6276284 | Msa0146580:intron | 25.0% |
| !! | AATCTTTATCTTTTGTACAC+AGG | - | chr1_4:6276441-6276460 | Msa0146580:intron | 25.0% |
| !! | ATCTTTATCTTTTGTACACA+GGG | - | chr1_4:6276442-6276461 | Msa0146580:intron | 25.0% |
| ! | AAACTGTCATCTATTAATTG+TGG | - | chr1_4:6276627-6276646 | Msa0146580:intron | 25.0% |
| !! | AGTTTATATACTGTTTTCTC+AGG | - | chr1_4:6277111-6277130 | Msa0146580:intron | 25.0% |
| !! | GAAATCAATAGCTAATTTTG+TGG | - | chr1_4:6277163-6277182 | Msa0146580:intron | 25.0% |
| !! | CTGAACTAGGTTTTATAACT+GGG | + | chr1_4:6270996-6271015 | None:intergenic | 30.0% |
| !! | ACTGAACTAGGTTTTATAAC+TGG | + | chr1_4:6270997-6271016 | None:intergenic | 30.0% |
| ATATATGCACACCTTTACAA+CGG | + | chr1_4:6271150-6271169 | None:intergenic | 30.0% | |
| ATTGACACTTCTACTGAATT+TGG | - | chr1_4:6271323-6271342 | Msa0146580:exon | 30.0% | |
| GACACGCTAAAAAAAACAAA+AGG | + | chr1_4:6271567-6271586 | None:intergenic | 30.0% | |
| GAAGAATTGGATCGTAATTA+CGG | + | chr1_4:6271592-6271611 | None:intergenic | 30.0% | |
| CAATTGAAAGAGATATTCTC+TGG | - | chr1_4:6271861-6271880 | Msa0146580:CDS | 30.0% | |
| ! | TACTTCAATTTTCCTTACTC+AGG | - | chr1_4:6271899-6271918 | Msa0146580:CDS | 30.0% |
| !! | GTTTATAAGCACTTTTGAGA+CGG | + | chr1_4:6272115-6272134 | None:intergenic | 30.0% |
| TCAATTTCATGCTTAGCTAA+TGG | - | chr1_4:6272169-6272188 | Msa0146580:intron | 30.0% | |
| TTGTACACTTGATATAGGAT+TGG | - | chr1_4:6272205-6272224 | Msa0146580:intron | 30.0% | |
| AATGGTTATGGTTATGCTAA+TGG | - | chr1_4:6272315-6272334 | Msa0146580:intron | 30.0% | |
| ATGGTTATGGTTATGCTAAT+GGG | - | chr1_4:6272316-6272335 | Msa0146580:intron | 30.0% | |
| GAACTCCTGAAATTAAAATC+GGG | + | chr1_4:6272663-6272682 | None:intergenic | 30.0% | |
| !! | AACAATTTTGTTTACAGGAG+GGG | + | chr1_4:6272985-6273004 | None:intergenic | 30.0% |
| CAAAGAATCTTCAAACTACA+GGG | + | chr1_4:6273018-6273037 | None:intergenic | 30.0% | |
| !! | GTTTGAAGATTCTTTGGTTT+TGG | - | chr1_4:6273022-6273041 | Msa0146580:intron | 30.0% |
| CAAAATCGATGATATGATAG+AGG | + | chr1_4:6273114-6273133 | None:intergenic | 30.0% | |
| TGTACAGTCAAAATTCATGA+AGG | - | chr1_4:6273132-6273151 | Msa0146580:intron | 30.0% | |
| TGTAGCATTACACATGTAAT+TGG | - | chr1_4:6273278-6273297 | Msa0146580:intron | 30.0% | |
| CTTTGCATAATTCTCATAGA+TGG | - | chr1_4:6273401-6273420 | Msa0146580:intron | 30.0% | |
| ! | TATATTTGCTTTCTGAAGAG+TGG | - | chr1_4:6273792-6273811 | Msa0146580:CDS | 30.0% |
| AATTAGACTTTAGGCAATGA+TGG | - | chr1_4:6273921-6273940 | Msa0146580:intron | 30.0% | |
| AAAGAAAAACGAAAAGAGGT+TGG | + | chr1_4:6274136-6274155 | None:intergenic | 30.0% | |
| CTCAATTAAGACAACTATTG+AGG | - | chr1_4:6274282-6274301 | Msa0146580:CDS | 30.0% | |
| AATTAAGACAACTATTGAGG+TGG | - | chr1_4:6274285-6274304 | Msa0146580:CDS | 30.0% | |
| ! | ATGTTTGGAAGAATGCATTT+TGG | - | chr1_4:6274400-6274419 | Msa0146580:intron | 30.0% |
| !! | AATGCATTTTGGTAAGTCAT+AGG | - | chr1_4:6274411-6274430 | Msa0146580:intron | 30.0% |
| !! | ATGCATTTTGGTAAGTCATA+GGG | - | chr1_4:6274412-6274431 | Msa0146580:intron | 30.0% |
| ! | ATAGGGCTGTTATTTATTTC+AGG | - | chr1_4:6274429-6274448 | Msa0146580:intron | 30.0% |
| TAGATATATGGAATCACAAC+AGG | - | chr1_4:6274579-6274598 | Msa0146580:intron | 30.0% | |
| TAAGAGTCTACAAAAGTAGT+CGG | + | chr1_4:6274647-6274666 | None:intergenic | 30.0% | |
| ATATAACCTCCTTGTAGAAA+TGG | - | chr1_4:6274913-6274932 | Msa0146580:intron | 30.0% | |
| TTAGATGTACCATTTCTACA+AGG | + | chr1_4:6274925-6274944 | None:intergenic | 30.0% | |
| ACTAGGGAAAATAACTGAAA+GGG | + | chr1_4:6275046-6275065 | None:intergenic | 30.0% | |
| ATTAAGGTCAATGTTCTCAA+TGG | + | chr1_4:6275150-6275169 | None:intergenic | 30.0% | |
| AACCAAGACTAACTAGATTA+AGG | + | chr1_4:6275166-6275185 | None:intergenic | 30.0% | |
| AAATCTGTATGATTTACGGA+TGG | - | chr1_4:6275416-6275435 | Msa0146580:intron | 30.0% | |
| ! | CATTATCATTTTCCTTACTG+GGG | + | chr1_4:6275445-6275464 | None:intergenic | 30.0% |
| GTAAAATTTATGGGTTCCAT+TGG | + | chr1_4:6275749-6275768 | None:intergenic | 30.0% | |
| TAGTTATGATTCCAGGAAAT+TGG | - | chr1_4:6275925-6275944 | Msa0146580:intron | 30.0% | |
| AGTTATGATTCCAGGAAATT+GGG | - | chr1_4:6275926-6275945 | Msa0146580:intron | 30.0% | |
| GTGATCTTTATGAACACATT+TGG | + | chr1_4:6275957-6275976 | None:intergenic | 30.0% | |
| ! | ATTTTCATGTTTCACTCTAC+AGG | - | chr1_4:6276051-6276070 | Msa0146580:intron | 30.0% |
| AACTGTTCTATCATAAGATC+CGG | + | chr1_4:6276117-6276136 | None:intergenic | 30.0% | |
| AAGGTTATAATGAAGTCCAA+GGG | + | chr1_4:6276144-6276163 | None:intergenic | 30.0% | |
| ! | AGAAATCTTTTAAACAGCTG+AGG | + | chr1_4:6276367-6276386 | None:intergenic | 30.0% |
| GATGGAAGTTATGTAATTTC+AGG | - | chr1_4:6276488-6276507 | Msa0146580:intron | 30.0% | |
| TTCAATTAGTTAGTTGGCTA+TGG | - | chr1_4:6276698-6276717 | Msa0146580:intron | 30.0% | |
| CTCAGAAGAGAAATTATTAG+AGG | + | chr1_4:6276729-6276748 | None:intergenic | 30.0% | |
| CTAATAATTTCTCTTCTGAG+AGG | - | chr1_4:6276729-6276748 | Msa0146580:CDS | 30.0% | |
| ! | AAAGAAGAAGCCTTGTATAT+TGG | + | chr1_4:6276911-6276930 | None:intergenic | 30.0% |
| TACACCAAAATTTCTTGCAT+TGG | + | chr1_4:6277218-6277237 | None:intergenic | 30.0% | |
| CAAAGTTATATCACGCTCTA+CGG | - | chr1_4:6271404-6271423 | Msa0146580:CDS | 35.0% | |
| AATGAATTACCTGAAGGTCT+TGG | + | chr1_4:6271452-6271471 | None:intergenic | 35.0% | |
| GCATTGAATGAATTACCTGA+AGG | + | chr1_4:6271458-6271477 | None:intergenic | 35.0% | |
| ! | TAGACCTTTTATAGGAGCAA+TGG | - | chr1_4:6271794-6271813 | Msa0146580:intron | 35.0% |
| TGTAGATGCAATTTCGTGTA+TGG | - | chr1_4:6271824-6271843 | Msa0146580:CDS | 35.0% | |
| ! | AGAGATATTCTCTGGTTCAA+TGG | - | chr1_4:6271869-6271888 | Msa0146580:CDS | 35.0% |
| ! | ATATTCTCTGGTTCAATGGA+TGG | - | chr1_4:6271873-6271892 | Msa0146580:CDS | 35.0% |
| ! | CTTATTTCCACAAGCTTTTC+AGG | + | chr1_4:6272040-6272059 | None:intergenic | 35.0% |
| CTGAAAAGCTTGTGGAAATA+AGG | - | chr1_4:6272038-6272057 | Msa0146580:intron | 35.0% | |
| AGAAAGATTGGAAGAGTGAT+GGG | - | chr1_4:6272342-6272361 | Msa0146580:intron | 35.0% | |
| ATGCTGTTGAAAGTTTGGTT+TGG | - | chr1_4:6272368-6272387 | Msa0146580:intron | 35.0% | |
| AAAAACCACCAATGAAACAC+GGG | + | chr1_4:6272416-6272435 | None:intergenic | 35.0% | |
| GAAAAACCACCAATGAAACA+CGG | + | chr1_4:6272417-6272436 | None:intergenic | 35.0% | |
| ATTACAAATAGCCTAGCAGA+GGG | + | chr1_4:6272457-6272476 | None:intergenic | 35.0% | |
| GCTAGGCTATTTGTAATCTT+TGG | - | chr1_4:6272460-6272479 | Msa0146580:CDS | 35.0% | |
| TGTCTACAAGTTTCTTGACT+GGG | + | chr1_4:6272534-6272553 | None:intergenic | 35.0% | |
| !!! | GGATACCCGATTTTAATTTC+AGG | - | chr1_4:6272655-6272674 | Msa0146580:intron | 35.0% |
| TTCAGTAGATAGTAAGATCC+AGG | - | chr1_4:6272680-6272699 | Msa0146580:intron | 35.0% | |
| CTAGAAATCGCTAATGTTAC+AGG | + | chr1_4:6272958-6272977 | None:intergenic | 35.0% | |
| CCAAAGAATCTTCAAACTAC+AGG | + | chr1_4:6273019-6273038 | None:intergenic | 35.0% | |
| CCTGTAGTTTGAAGATTCTT+TGG | - | chr1_4:6273016-6273035 | Msa0146580:intron | 35.0% | |
| AAAATCCGCTCAAATTACAG+GGG | + | chr1_4:6273089-6273108 | None:intergenic | 35.0% | |
| CAAAATCCGCTCAAATTACA+GGG | + | chr1_4:6273090-6273109 | None:intergenic | 35.0% | |
| ACTGTAATATTAGCGGTTTC+TGG | + | chr1_4:6273225-6273244 | None:intergenic | 35.0% | |
| AGAAACCGCTAATATTACAG+TGG | - | chr1_4:6273224-6273243 | Msa0146580:intron | 35.0% | |
| GAAACCGCTAATATTACAGT+GGG | - | chr1_4:6273225-6273244 | Msa0146580:intron | 35.0% | |
| AAACCGCTAATATTACAGTG+GGG | - | chr1_4:6273226-6273245 | Msa0146580:intron | 35.0% | |
| TTACCCCACTGTAATATTAG+CGG | + | chr1_4:6273232-6273251 | None:intergenic | 35.0% | |
| ! | TTTTCCAACCTCCTTATAAG+TGG | - | chr1_4:6273308-6273327 | Msa0146580:intron | 35.0% |
| TTTCCAACCTCCTTATAAGT+GGG | - | chr1_4:6273309-6273328 | Msa0146580:intron | 35.0% | |
| TAATGGCACTAGTATAGAGA+GGG | + | chr1_4:6273564-6273583 | None:intergenic | 35.0% | |
| ! | CAAGTAAGGAAAAGGTGTAA+TGG | + | chr1_4:6273581-6273600 | None:intergenic | 35.0% |
| TTGAGCATCAAGTAAGGAAA+AGG | + | chr1_4:6273589-6273608 | None:intergenic | 35.0% | |
| TGTTTGCAGATATTCGTCTT+TGG | - | chr1_4:6273647-6273666 | Msa0146580:CDS | 35.0% | |
| GTTTGCAGATATTCGTCTTT+GGG | - | chr1_4:6273648-6273667 | Msa0146580:CDS | 35.0% | |
| ! | TTCATGTTGGTTACAACTTG+TGG | - | chr1_4:6273955-6273974 | Msa0146580:intron | 35.0% |
| ! | TCATGTTGGTTACAACTTGT+GGG | - | chr1_4:6273956-6273975 | Msa0146580:intron | 35.0% |
| TTCCACATGAAACAAGAATG+CGG | + | chr1_4:6274096-6274115 | None:intergenic | 35.0% | |
| ! | AACTTTTCTGATGTGTGAAC+TGG | - | chr1_4:6274197-6274216 | Msa0146580:intron | 35.0% |
| TTATGTTCAGTGTCAGACTT+TGG | - | chr1_4:6274224-6274243 | Msa0146580:intron | 35.0% | |
| !! | AATGTTCCTGTTGCTTCTTT+TGG | - | chr1_4:6274247-6274266 | Msa0146580:intron | 35.0% |
| !! | ATGTTCCTGTTGCTTCTTTT+GGG | - | chr1_4:6274248-6274267 | Msa0146580:intron | 35.0% |
| !!! | TTTGAACTTTTTTCCCTAGC+CGG | - | chr1_4:6274368-6274387 | Msa0146580:intron | 35.0% |
| TTCCAAACATAAACACTTGC+CGG | + | chr1_4:6274390-6274409 | None:intergenic | 35.0% | |
| AGCCAGTAAATAGTTTCGTA+TGG | - | chr1_4:6274704-6274723 | Msa0146580:CDS | 35.0% | |
| GCCAGTAAATAGTTTCGTAT+GGG | - | chr1_4:6274705-6274724 | Msa0146580:CDS | 35.0% | |
| CCAGTAAATAGTTTCGTATG+GGG | - | chr1_4:6274706-6274725 | Msa0146580:CDS | 35.0% | |
| CTGCAATTACAATACAACAG+TGG | - | chr1_4:6274871-6274890 | Msa0146580:intron | 35.0% | |
| CTAGGGAAAATAACTGAAAG+GGG | + | chr1_4:6275045-6275064 | None:intergenic | 35.0% | |
| GACTAGGGAAAATAACTGAA+AGG | + | chr1_4:6275047-6275066 | None:intergenic | 35.0% | |
| ATTGATGGGAGTTGAGTTAA+CGG | + | chr1_4:6275124-6275143 | None:intergenic | 35.0% | |
| GTTCTCAATGGTGAATTGAT+GGG | + | chr1_4:6275138-6275157 | None:intergenic | 35.0% | |
| TGTTCTCAATGGTGAATTGA+TGG | + | chr1_4:6275139-6275158 | None:intergenic | 35.0% | |
| ! | GACCTTAATCTAGTTAGTCT+TGG | - | chr1_4:6275161-6275180 | Msa0146580:intron | 35.0% |
| !!! | CATGGCACATGTTTTGATTT+TGG | - | chr1_4:6275503-6275522 | Msa0146580:intron | 35.0% |
| !! | CCAAGCTATAGAATTGGTTT+TGG | + | chr1_4:6275723-6275742 | None:intergenic | 35.0% |
| CCAAAACCAATTCTATAGCT+TGG | - | chr1_4:6275720-6275739 | Msa0146580:intron | 35.0% | |
| TGGATTCCAAGCTATAGAAT+TGG | + | chr1_4:6275729-6275748 | None:intergenic | 35.0% | |
| TTCTATAGCTTGGAATCCAA+TGG | - | chr1_4:6275730-6275749 | Msa0146580:intron | 35.0% | |
| ! | GGAACCCATAAATTTTACAG+TGG | - | chr1_4:6275751-6275770 | Msa0146580:intron | 35.0% |
| !! | AATAAAAGCATCAGAACCAC+TGG | + | chr1_4:6275799-6275818 | None:intergenic | 35.0% |
| ! | GACAAATTTTATTGGCATGC+AGG | - | chr1_4:6275880-6275899 | Msa0146580:intron | 35.0% |
| ACTGCTATAGTTATGATTCC+AGG | - | chr1_4:6275918-6275937 | Msa0146580:intron | 35.0% | |
| ACGTTTCTGCAGTGTAATTA+TGG | - | chr1_4:6275975-6275994 | Msa0146580:intron | 35.0% | |
| CAAGGTTATAATGAAGTCCA+AGG | + | chr1_4:6276145-6276164 | None:intergenic | 35.0% | |
| GTGAGAATCTTCCCTTATAA+TGG | - | chr1_4:6276222-6276241 | Msa0146580:intron | 35.0% | |
| AGAATCTTCCCTTATAATGG+TGG | - | chr1_4:6276225-6276244 | Msa0146580:intron | 35.0% | |
| ATGATACTAACCTCAGACTT+TGG | - | chr1_4:6276516-6276535 | Msa0146580:intron | 35.0% | |
| ATCTCAGGGAATGAATTGAA+GGG | + | chr1_4:6276755-6276774 | None:intergenic | 35.0% | |
| AATCTCAGGGAATGAATTGA+AGG | + | chr1_4:6276756-6276775 | None:intergenic | 35.0% | |
| CTTACCAAGACCAATATACA+AGG | - | chr1_4:6276898-6276917 | Msa0146580:intron | 35.0% | |
| AGCTGATGCTAAGAAAAAGA+AGG | - | chr1_4:6276943-6276962 | Msa0146580:CDS | 35.0% | |
| CTAAGAAAAAGAAGGAAGAG+AGG | - | chr1_4:6276951-6276970 | Msa0146580:CDS | 35.0% | |
| ATAATTCTTCTTTCCCGCAA+CGG | + | chr1_4:6277016-6277035 | None:intergenic | 35.0% | |
| ATTATCAGAGAAGTTGAGTG+AGG | - | chr1_4:6277031-6277050 | Msa0146580:intron | 35.0% | |
| !! | TTGCATTTTTCAGTATGCAC+TGG | + | chr1_4:6277067-6277086 | None:intergenic | 35.0% |
| ! | ATACTGTTTTCTCAGGCAAA+TGG | - | chr1_4:6277118-6277137 | Msa0146580:intron | 35.0% |
| ! | TTTTGTGGTGTTTTACTGCT+TGG | - | chr1_4:6277178-6277197 | Msa0146580:intron | 35.0% |
| ! | TGTGCCAATGCAAGAAATTT+TGG | - | chr1_4:6277211-6277230 | Msa0146580:intron | 35.0% |
| TTCTCTTGAGGACGAAGAAT+TGG | + | chr1_4:6271605-6271624 | None:intergenic | 40.0% | |
| AATTCTTCGTCCTCAAGAGA+AGG | - | chr1_4:6271604-6271623 | Msa0146580:intron | 40.0% | |
| CAATGCAGTGAAGTTGGATA+AGG | - | chr1_4:6271649-6271668 | Msa0146580:intron | 40.0% | |
| CCATCCATTGCTCCTATAAA+AGG | + | chr1_4:6271801-6271820 | None:intergenic | 40.0% | |
| ! | CCTTTTATAGGAGCAATGGA+TGG | - | chr1_4:6271798-6271817 | Msa0146580:intron | 40.0% |
| ! | TTCCTTACTCAGGTCCTTTT+TGG | - | chr1_4:6271909-6271928 | Msa0146580:intron | 40.0% |
| ATCCAAAAAGGACCTGAGTA+AGG | + | chr1_4:6271914-6271933 | None:intergenic | 40.0% | |
| AAGCTATCCTGAAAAGCTTG+TGG | - | chr1_4:6272030-6272049 | Msa0146580:intron | 40.0% | |
| !!! | AAGCACTTTTGAGACGGTTT+TGG | + | chr1_4:6272109-6272128 | None:intergenic | 40.0% |
| !! | GCTAATGGGTTGAGAAAGAT+TGG | - | chr1_4:6272330-6272349 | Msa0146580:intron | 40.0% |
| GAGAAAGATTGGAAGAGTGA+TGG | - | chr1_4:6272341-6272360 | Msa0146580:intron | 40.0% | |
| ! | GGTTGATGCTGTTGAAAGTT+TGG | - | chr1_4:6272363-6272382 | Msa0146580:intron | 40.0% |
| !! | GGTTTTTCAACACGTCTACT+TGG | - | chr1_4:6272429-6272448 | Msa0146580:CDS | 40.0% |
| TTACAAATAGCCTAGCAGAG+GGG | + | chr1_4:6272456-6272475 | None:intergenic | 40.0% | |
| GATTACAAATAGCCTAGCAG+AGG | + | chr1_4:6272458-6272477 | None:intergenic | 40.0% | |
| CTTGACTGGGAGTAAAATTG+TGG | + | chr1_4:6272521-6272540 | None:intergenic | 40.0% | |
| CTGTCTACAAGTTTCTTGAC+TGG | + | chr1_4:6272535-6272554 | None:intergenic | 40.0% | |
| GAAATCGCTAATGTTACAGG+AGG | + | chr1_4:6272955-6272974 | None:intergenic | 40.0% | |
| GAATCTTCAAACTACAGGGT+TGG | + | chr1_4:6273014-6273033 | None:intergenic | 40.0% | |
| GCAAAATCCGCTCAAATTAC+AGG | + | chr1_4:6273091-6273110 | None:intergenic | 40.0% | |
| TTCCAACCTCCTTATAAGTG+GGG | - | chr1_4:6273310-6273329 | Msa0146580:intron | 40.0% | |
| TGATTCTTGCCCCACTTATA+AGG | + | chr1_4:6273322-6273341 | None:intergenic | 40.0% | |
| !! | ATTCTGGTGCTTGTTTTCAC+TGG | - | chr1_4:6273522-6273541 | Msa0146580:intron | 40.0% |
| AATGGCACTAGTATAGAGAG+GGG | + | chr1_4:6273563-6273582 | None:intergenic | 40.0% | |
| GTAATGGCACTAGTATAGAG+AGG | + | chr1_4:6273565-6273584 | None:intergenic | 40.0% | |
| !! | AACGGATTGAGCATCAAGTA+AGG | + | chr1_4:6273595-6273614 | None:intergenic | 40.0% |
| AGACTTTAGGCAATGATGGT+AGG | - | chr1_4:6273925-6273944 | Msa0146580:intron | 40.0% | |
| TTTAGGCAATGATGGTAGGA+AGG | - | chr1_4:6273929-6273948 | Msa0146580:intron | 40.0% | |
| ! | GGTAGGAAGGATTTTCATGT+TGG | - | chr1_4:6273942-6273961 | Msa0146580:intron | 40.0% |
| !! | AAAAGAGGTTGGTACTTACG+TGG | + | chr1_4:6274125-6274144 | None:intergenic | 40.0% |
| !! | TGTTCCTGTTGCTTCTTTTG+GGG | - | chr1_4:6274249-6274268 | Msa0146580:intron | 40.0% |
| ! | ATTGAGGTGGAATTTTGTGC+TGG | - | chr1_4:6274298-6274317 | Msa0146580:CDS | 40.0% |
| CCCCATACGAAACTATTTAC+TGG | + | chr1_4:6274709-6274728 | None:intergenic | 40.0% | |
| TTTCGTATGGGGATCAGATA+CGG | - | chr1_4:6274717-6274736 | Msa0146580:intron | 40.0% | |
| ATTTCTGTCCGCTTTAATCC+AGG | - | chr1_4:6274742-6274761 | Msa0146580:intron | 40.0% | |
| ! | TTGGTTCTCCTGGATTAAAG+CGG | + | chr1_4:6274753-6274772 | None:intergenic | 40.0% |
| CAGTGGCTGATTACAATGAA+TGG | - | chr1_4:6274888-6274907 | Msa0146580:intron | 40.0% | |
| GATGTACCATTTCTACAAGG+AGG | + | chr1_4:6274922-6274941 | None:intergenic | 40.0% | |
| TATCTGATCAGTTTGTCCAG+TGG | - | chr1_4:6275780-6275799 | Msa0146580:intron | 40.0% | |
| TCATGTTTCACTCTACAGGA+TGG | - | chr1_4:6276055-6276074 | Msa0146580:intron | 40.0% | |
| ! | GATATTGACTACTCACCAAC+TGG | - | chr1_4:6276077-6276096 | Msa0146580:intron | 40.0% |
| GATAGAACAGTTAGTTCCCT+TGG | - | chr1_4:6276125-6276144 | Msa0146580:intron | 40.0% | |
| TGCTGTGACCACCATTATAA+GGG | + | chr1_4:6276236-6276255 | None:intergenic | 40.0% | |
| GTATTCTGTGTCAAGTTCAG+CGG | - | chr1_4:6276464-6276483 | Msa0146580:intron | 40.0% | |
| TACTAACCTCAGACTTTGGA+AGG | - | chr1_4:6276520-6276539 | Msa0146580:intron | 40.0% | |
| TCCAAGTTGTTCTGATGCTT+TGG | + | chr1_4:6276546-6276565 | None:intergenic | 40.0% | |
| TCGTAAACAGGTGAATCTCA+GGG | + | chr1_4:6276769-6276788 | None:intergenic | 40.0% | |
| ATCGTAAACAGGTGAATCTC+AGG | + | chr1_4:6276770-6276789 | None:intergenic | 40.0% | |
| ! | TCATGCTTCTTCTTTTCCCT+CGG | + | chr1_4:6276809-6276828 | None:intergenic | 40.0% |
| CAATACGGTTAACTTCAGGA+AGG | + | chr1_4:6276865-6276884 | None:intergenic | 40.0% | |
| CTTGCAATACGGTTAACTTC+AGG | + | chr1_4:6276869-6276888 | None:intergenic | 40.0% | |
| CTGAAGTTAACCGTATTGCA+AGG | - | chr1_4:6276867-6276886 | Msa0146580:intron | 40.0% | |
| AGTGTCTATGCCTTGCAATA+CGG | + | chr1_4:6276880-6276899 | None:intergenic | 40.0% | |
| ! | GAAGCCTTGTATATTGGTCT+TGG | + | chr1_4:6276905-6276924 | None:intergenic | 40.0% |
| AGAAAAAGAAGGAAGAGAGG+AGG | - | chr1_4:6276954-6276973 | Msa0146580:CDS | 40.0% | |
| GGTTGAAGGTGAACTGAACT+AGG | + | chr1_4:6271009-6271028 | None:intergenic | 45.0% | |
| CCTTCAACCTCGCATAACAT+CGG | - | chr1_4:6271020-6271039 | Msa0146580:three_prime_UTR | 45.0% | |
| AGTTATATCACGCTCTACGG+AGG | - | chr1_4:6271407-6271426 | Msa0146580:CDS | 45.0% | |
| TGCTCTCAATGCAGTGAAGT+TGG | - | chr1_4:6271643-6271662 | Msa0146580:intron | 45.0% | |
| ! | TTCTCTGGTTCAATGGATGG+AGG | - | chr1_4:6271876-6271895 | Msa0146580:CDS | 45.0% |
| AATGAAACACGGGTCTGGTT+CGG | + | chr1_4:6272406-6272425 | None:intergenic | 45.0% | |
| ! | GTGGTTGATGTATCGTCTCT+AGG | + | chr1_4:6272502-6272521 | None:intergenic | 45.0% |
| TCACTCCCCTGTAATTTGAG+CGG | - | chr1_4:6273081-6273100 | Msa0146580:intron | 45.0% | |
| TTCTTGCCCCACTTATAAGG+AGG | + | chr1_4:6273319-6273338 | None:intergenic | 45.0% | |
| GGGACAAAAAGGAGGAGTAA+TGG | + | chr1_4:6273485-6273504 | None:intergenic | 45.0% | |
| AGAATGACACAGCCAGATGT+GGG | + | chr1_4:6273507-6273526 | None:intergenic | 45.0% | |
| !! | GTCTTTGGGATATAGCTGCT+AGG | - | chr1_4:6273662-6273681 | Msa0146580:CDS | 45.0% |
| ! | ACATAAACACTTGCCGGCTA+GGG | + | chr1_4:6274384-6274403 | None:intergenic | 45.0% |
| ! | AACATAAACACTTGCCGGCT+AGG | + | chr1_4:6274385-6274404 | None:intergenic | 45.0% |
| AGCCGGCAAGTGTTTATGTT+TGG | - | chr1_4:6274385-6274404 | Msa0146580:intron | 45.0% | |
| GTGGCGCTCAAGTAGATATA+TGG | - | chr1_4:6274567-6274586 | Msa0146580:intron | 45.0% | |
| TGTTGTTACCTCCTTTCTGC+AGG | - | chr1_4:6274677-6274696 | Msa0146580:intron | 45.0% | |
| !! | GCTAAGAGATTTGGTTCTCC+TGG | + | chr1_4:6274763-6274782 | None:intergenic | 45.0% |
| !! | GCTGAGCTTGCTAAGAGATT+TGG | + | chr1_4:6274772-6274791 | None:intergenic | 45.0% |
| ATCTCTTAGCAAGCTCAGCT+AGG | - | chr1_4:6274773-6274792 | Msa0146580:intron | 45.0% | |
| ACACGGGTAAGGATTTGGAA+GGG | + | chr1_4:6275007-6275026 | None:intergenic | 45.0% | |
| ! | TACTATCTGAGACACGGGTA+AGG | + | chr1_4:6275018-6275037 | None:intergenic | 45.0% |
| !! | GAGAGTACTATCTGAGACAC+GGG | + | chr1_4:6275023-6275042 | None:intergenic | 45.0% |
| !! | GGAGAGTACTATCTGAGACA+CGG | + | chr1_4:6275024-6275043 | None:intergenic | 45.0% |
| GGGAATCATGAGAGAGACTA+GGG | + | chr1_4:6275062-6275081 | None:intergenic | 45.0% | |
| TGGGAATCATGAGAGAGACT+AGG | + | chr1_4:6275063-6275082 | None:intergenic | 45.0% | |
| GAGTTAACGGAATTGCCAGA+TGG | + | chr1_4:6275111-6275130 | None:intergenic | 45.0% | |
| TGCAGTTACGAAATGTGCCA+AGG | + | chr1_4:6275589-6275608 | None:intergenic | 45.0% | |
| ! | TTTGGCTTCACCCAATTTCC+TGG | + | chr1_4:6275939-6275958 | None:intergenic | 45.0% |
| GTGACAAATTCTCGACCAGT+TGG | + | chr1_4:6276095-6276114 | None:intergenic | 45.0% | |
| ACTGGTCGAGAATTTGTCAC+CGG | - | chr1_4:6276095-6276114 | Msa0146580:intron | 45.0% | |
| CTGCTGTGACCACCATTATA+AGG | + | chr1_4:6276237-6276256 | None:intergenic | 45.0% | |
| ! | GCCAAAGCATCAGAACAACT+TGG | - | chr1_4:6276542-6276561 | Msa0146580:CDS | 45.0% |
| TGTGTGTGTGTGGAGAAAGA+CGG | + | chr1_4:6276590-6276609 | None:intergenic | 45.0% | |
| TTTGTGTGTGTGTGTGTGTG+TGG | + | chr1_4:6276600-6276619 | None:intergenic | 45.0% | |
| ! | GAAGAAGCATGACTATCACG+AGG | - | chr1_4:6276817-6276836 | Msa0146580:intron | 45.0% |
| AGGCCATAAAGAAACGCTAC+AGG | - | chr1_4:6276837-6276856 | Msa0146580:intron | 45.0% | |
| GTGCCTGTAGCGTTTCTTTA+TGG | + | chr1_4:6276843-6276862 | None:intergenic | 45.0% | |
| ! | CTTTGTTGTAACACTCCCTG+GGG | + | chr1_4:6276993-6277012 | None:intergenic | 45.0% |
| ! | GCTTTGTTGTAACACTCCCT+GGG | + | chr1_4:6276994-6277013 | None:intergenic | 45.0% |
| GTGTTACAACAAAGCCGTTG+CGG | - | chr1_4:6276999-6277018 | Msa0146580:intron | 45.0% | |
| TGTTACAACAAAGCCGTTGC+GGG | - | chr1_4:6277000-6277019 | Msa0146580:intron | 45.0% | |
| CCGATGTTATGCGAGGTTGA+AGG | + | chr1_4:6271023-6271042 | None:intergenic | 50.0% | |
| TTAGGGTTCGGAATTGGCAG+AGG | + | chr1_4:6271062-6271081 | None:intergenic | 50.0% | |
| ACGGAGGAAGTAGCAATGAG+CGG | + | chr1_4:6271124-6271143 | None:intergenic | 50.0% | |
| CACACCTTTACAACGGCGAA+CGG | + | chr1_4:6271143-6271162 | None:intergenic | 50.0% | |
| AGAACGAAGCCAAGACCTTC+AGG | - | chr1_4:6271440-6271459 | Msa0146580:CDS | 50.0% | |
| TCTTCGTCCTCAAGAGAAGG+CGG | - | chr1_4:6271607-6271626 | Msa0146580:intron | 50.0% | |
| TATTCCACCGCCTTCTCTTG+AGG | + | chr1_4:6271617-6271636 | None:intergenic | 50.0% | |
| GAACCAGACCCGTGTTTCAT+TGG | - | chr1_4:6272405-6272424 | Msa0146580:CDS | 50.0% | |
| TGCCCCACTTATAAGGAGGT+TGG | + | chr1_4:6273315-6273334 | None:intergenic | 50.0% | |
| AGATGTGGGGGACAAAAAGG+AGG | + | chr1_4:6273493-6273512 | None:intergenic | 50.0% | |
| ! | TCCTTTTTGTCCCCCACATC+TGG | - | chr1_4:6273492-6273511 | Msa0146580:intron | 50.0% |
| AATGACACAGCCAGATGTGG+GGG | + | chr1_4:6273505-6273524 | None:intergenic | 50.0% | |
| GAATGACACAGCCAGATGTG+GGG | + | chr1_4:6273506-6273525 | None:intergenic | 50.0% | |
| CAGAATGACACAGCCAGATG+TGG | + | chr1_4:6273508-6273527 | None:intergenic | 50.0% | |
| ! | CACATCTGGCTGTGTCATTC+TGG | - | chr1_4:6273506-6273525 | Msa0146580:intron | 50.0% |
| ! | GGCCGCATTCTTGTTTCATG+TGG | - | chr1_4:6274091-6274110 | Msa0146580:intron | 50.0% |
| GAGTCCCCAAAAGAAGCAAC+AGG | + | chr1_4:6274256-6274275 | None:intergenic | 50.0% | |
| !! | GCTTCTTTTGGGGACTCAGA+TGG | - | chr1_4:6274259-6274278 | Msa0146580:CDS | 50.0% |
| ! | GAGGTGGAATTTTGTGCTGG+AGG | - | chr1_4:6274301-6274320 | Msa0146580:CDS | 50.0% |
| TTAGCGCTGTTGATCACCAG+TGG | - | chr1_4:6274522-6274541 | Msa0146580:intron | 50.0% | |
| TAGCGCTGTTGATCACCAGT+GGG | - | chr1_4:6274523-6274542 | Msa0146580:intron | 50.0% | |
| GACACGGGTAAGGATTTGGA+AGG | + | chr1_4:6275008-6275027 | None:intergenic | 50.0% | |
| CTGAGACACGGGTAAGGATT+TGG | + | chr1_4:6275012-6275031 | None:intergenic | 50.0% | |
| AGGAGGAATGAAGAGGACGT+GGG | + | chr1_4:6275082-6275101 | None:intergenic | 50.0% | |
| GCAAGTGAGGAGGAATGAAG+AGG | + | chr1_4:6275089-6275108 | None:intergenic | 50.0% | |
| ATTCCTCCTCACTTGCCATC+TGG | - | chr1_4:6275093-6275112 | Msa0146580:intron | 50.0% | |
| GAATTGCCAGATGGCAAGTG+AGG | + | chr1_4:6275102-6275121 | None:intergenic | 50.0% | |
| TACGGATGGATACCCCAGTA+AGG | - | chr1_4:6275430-6275449 | Msa0146580:intron | 50.0% | |
| GGCATGCAGGCAAATGAAGA+TGG | - | chr1_4:6275893-6275912 | Msa0146580:intron | 50.0% | |
| ! | CTTTGGCCTTCCAAAGTCTG+AGG | + | chr1_4:6276529-6276548 | None:intergenic | 50.0% |
| CCTGTGGCATCATCGTAAAC+AGG | + | chr1_4:6276781-6276800 | None:intergenic | 50.0% | |
| CCTGTTTACGATGATGCCAC+AGG | - | chr1_4:6276778-6276797 | Msa0146580:CDS | 50.0% | |
| ! | TTTTCCCTCGGAAGAACCTG+TGG | + | chr1_4:6276797-6276816 | None:intergenic | 50.0% |
| !! | GGCTTTGTTGTAACACTCCC+TGG | + | chr1_4:6276995-6277014 | None:intergenic | 50.0% |
| !! | ACCTCGCATAACATCGGCTC+CGG | - | chr1_4:6271026-6271045 | Msa0146580:three_prime_UTR | 55.0% |
| GGTTCGGAATTGGCAGAGGA+TGG | + | chr1_4:6271058-6271077 | None:intergenic | 55.0% | |
| CAGGGGTTAGGGTTCGGAAT+TGG | + | chr1_4:6271068-6271087 | None:intergenic | 55.0% | |
| TGCACACAGGGGTTAGGGTT+CGG | + | chr1_4:6271074-6271093 | None:intergenic | 55.0% | |
| GAGGAAGTAGCAATGAGCGG+CGG | + | chr1_4:6271121-6271140 | None:intergenic | 55.0% | |
| TCCTCCGTTCGCCGTTGTAA+AGG | - | chr1_4:6271136-6271155 | Msa0146580:three_prime_UTR | 55.0% | |
| ACCTTTACAACGGCGAACGG+AGG | + | chr1_4:6271140-6271159 | None:intergenic | 55.0% | |
| !! | GGGTCTGGTTCGGTATGGTA+TGG | + | chr1_4:6272396-6272415 | None:intergenic | 55.0% |
| !! | AACACGGGTCTGGTTCGGTA+TGG | + | chr1_4:6272401-6272420 | None:intergenic | 55.0% |
| CCACCAATGAAACACGGGTC+TGG | + | chr1_4:6272411-6272430 | None:intergenic | 55.0% | |
| CCAGACCCGTGTTTCATTGG+TGG | - | chr1_4:6272408-6272427 | Msa0146580:CDS | 55.0% | |
| TCTACTTGGACCCCTCTGCT+AGG | - | chr1_4:6272443-6272462 | Msa0146580:CDS | 55.0% | |
| GCCAGATGTGGGGGACAAAA+AGG | + | chr1_4:6273496-6273515 | None:intergenic | 55.0% | |
| ACTAGTATAGAGAGGGGCGG+GGG | + | chr1_4:6273557-6273576 | None:intergenic | 55.0% | |
| CACTAGTATAGAGAGGGGCG+GGG | + | chr1_4:6273558-6273577 | None:intergenic | 55.0% | |
| GCACTAGTATAGAGAGGGGC+GGG | + | chr1_4:6273559-6273578 | None:intergenic | 55.0% | |
| GGCACTAGTATAGAGAGGGG+CGG | + | chr1_4:6273560-6273579 | None:intergenic | 55.0% | |
| CGGACTGTTTGTCAGTTCCC+TGG | - | chr1_4:6274028-6274047 | Msa0146580:intron | 55.0% | |
| TGTCAGTTCCCTGGACACCA+AGG | - | chr1_4:6274037-6274056 | Msa0146580:intron | 55.0% | |
| GCTGTTGATCACCAGTGGGA+CGG | - | chr1_4:6274527-6274546 | Msa0146580:intron | 55.0% | |
| ATCTACTTGAGCGCCACCTG+TGG | + | chr1_4:6274564-6274583 | None:intergenic | 55.0% | |
| ACTGGCTGAGACCTGCAGAA+AGG | + | chr1_4:6274691-6274710 | None:intergenic | 55.0% | |
| GAGGAGGAATGAAGAGGACG+TGG | + | chr1_4:6275083-6275102 | None:intergenic | 55.0% | |
| TTGCCAGATGGCAAGTGAGG+AGG | + | chr1_4:6275099-6275118 | None:intergenic | 55.0% | |
| TGTGTCAAGTTCAGCGGCGA+TGG | - | chr1_4:6276470-6276489 | Msa0146580:intron | 55.0% | |
| TGATGCCACAGGTTCTTCCG+AGG | - | chr1_4:6276789-6276808 | Msa0146580:intron | 55.0% | |
| GATGCCACAGGTTCTTCCGA+GGG | - | chr1_4:6276790-6276809 | Msa0146580:intron | 55.0% | |
| ! | TGGCAGAGGATGGTGCTAGC+CGG | + | chr1_4:6271048-6271067 | None:intergenic | 60.0% |
| GGTGGTGCACACAGGGGTTA+GGG | + | chr1_4:6271079-6271098 | None:intergenic | 60.0% | |
| ATTGGCGGTGGTGCACACAG+GGG | + | chr1_4:6271085-6271104 | None:intergenic | 60.0% | |
| GATTGGCGGTGGTGCACACA+GGG | + | chr1_4:6271086-6271105 | None:intergenic | 60.0% | |
| !! | GGTGAGCTGTGGTGGATTGG+CGG | + | chr1_4:6271100-6271119 | None:intergenic | 60.0% |
| TCGTCCTCAAGAGAAGGCGG+TGG | - | chr1_4:6271610-6271629 | Msa0146580:intron | 60.0% | |
| CTAGTATAGAGAGGGGCGGG+GGG | + | chr1_4:6273556-6273575 | None:intergenic | 60.0% | |
| !! | GCACAGCACCTTGGTGTCCA+GGG | + | chr1_4:6274048-6274067 | None:intergenic | 60.0% |
| !! | GGCCTGACAGCATCGACAGA+TGG | - | chr1_4:6274070-6274089 | Msa0146580:intron | 60.0% |
| GGCCATCTGTCGATGCTGTC+AGG | + | chr1_4:6274075-6274094 | None:intergenic | 60.0% | |
| CAAAATGCTCGCCGTCCCAC+TGG | + | chr1_4:6274541-6274560 | None:intergenic | 60.0% | |
| ! | GACGGCGAGCATTTTGCCAC+AGG | - | chr1_4:6274545-6274564 | Msa0146580:intron | 60.0% |
| ! | GGCGAGCATTTTGCCACAGG+TGG | - | chr1_4:6274548-6274567 | Msa0146580:intron | 60.0% |
| GGCTGAGACCTGCAGAAAGG+AGG | + | chr1_4:6274688-6274707 | None:intergenic | 60.0% | |
| AGGAAAGCTCACAGTGCCCC+AGG | - | chr1_4:6276974-6276993 | Msa0146580:intron | 60.0% | |
| GGAAAGCTCACAGTGCCCCA+GGG | - | chr1_4:6276975-6276994 | Msa0146580:intron | 60.0% | |
| GCCGGAGCCGATGTTATGCG+AGG | + | chr1_4:6271030-6271049 | None:intergenic | 65.0% | |
| CGGTGGTGCACACAGGGGTT+AGG | + | chr1_4:6271080-6271099 | None:intergenic | 65.0% | |
| ! | GGATTGGCGGTGGTGCACAC+AGG | + | chr1_4:6271087-6271106 | None:intergenic | 65.0% |
| !! | GAGCTGTGGTGGATTGGCGG+TGG | + | chr1_4:6271097-6271116 | None:intergenic | 65.0% |
| !! | GGCGGTGAGCTGTGGTGGAT+TGG | + | chr1_4:6271103-6271122 | None:intergenic | 65.0% |
| CAATGAGCGGCGGTGAGCTG+TGG | + | chr1_4:6271111-6271130 | None:intergenic | 65.0% | |
| !! | CGCACAGCACCTTGGTGTCC+AGG | + | chr1_4:6274049-6274068 | None:intergenic | 65.0% |
| !! | GGACACCAAGGTGCTGTGCG+AGG | - | chr1_4:6274049-6274068 | Msa0146580:intron | 65.0% |
| TCAGGCCTCGCACAGCACCT+TGG | + | chr1_4:6274057-6274076 | None:intergenic | 65.0% | |
| TGAGCGGCGGTGAGCTGTGG+TGG | + | chr1_4:6271108-6271127 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6270977 | 6277406 | 6270977 | ID=Msa0146580;Name=Msa0146580 |
| chr1_4 | mRNA | 6270977 | 6277406 | 6270977 | ID=Msa0146580-mRNA-1;Parent=Msa0146580;Name=Msa0146580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=184|0.85|0.93|1|0.85|0.86|15|355|404 |
| chr1_4 | exon | 6270977 | 6271583 | 6270977 | ID=Msa0146580-mRNA-1:exon:2754;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6271815 | 6271920 | 6271815 | ID=Msa0146580-mRNA-1:exon:2753;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6272097 | 6272161 | 6272097 | ID=Msa0146580-mRNA-1:exon:2752;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6272250 | 6272310 | 6272250 | ID=Msa0146580-mRNA-1:exon:2751;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6272396 | 6272481 | 6272396 | ID=Msa0146580-mRNA-1:exon:2750;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6272611 | 6272664 | 6272611 | ID=Msa0146580-mRNA-1:exon:2749;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6272916 | 6272979 | 6272916 | ID=Msa0146580-mRNA-1:exon:2748;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6273589 | 6273684 | 6273589 | ID=Msa0146580-mRNA-1:exon:2747;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6273783 | 6273857 | 6273783 | ID=Msa0146580-mRNA-1:exon:2746;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6274258 | 6274356 | 6274258 | ID=Msa0146580-mRNA-1:exon:2745;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6274700 | 6274727 | 6274700 | ID=Msa0146580-mRNA-1:exon:2744;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6276525 | 6276597 | 6276525 | ID=Msa0146580-mRNA-1:exon:2743;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6276713 | 6276802 | 6276713 | ID=Msa0146580-mRNA-1:exon:2742;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6276922 | 6276990 | 6276922 | ID=Msa0146580-mRNA-1:exon:2741;Parent=Msa0146580-mRNA-1 |
| chr1_4 | exon | 6277226 | 6277406 | 6277226 | ID=Msa0146580-mRNA-1:exon:2740;Parent=Msa0146580-mRNA-1 |
| chr1_4 | five_prime_UTR | 6277226 | 6277406 | 6277226 | ID=Msa0146580-mRNA-1:five_prime_utr;Parent=Msa0146580-mRNA-1 |
| chr1_4 | five_prime_UTR | 6276988 | 6276990 | 6276988 | ID=Msa0146580-mRNA-1:five_prime_utr;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6276922 | 6276987 | 6276922 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6276713 | 6276802 | 6276713 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6276525 | 6276597 | 6276525 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6274700 | 6274727 | 6274700 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6274258 | 6274356 | 6274258 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6273783 | 6273857 | 6273783 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6273589 | 6273684 | 6273589 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6272916 | 6272979 | 6272916 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6272611 | 6272664 | 6272611 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6272396 | 6272481 | 6272396 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6272250 | 6272310 | 6272250 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6272097 | 6272161 | 6272097 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6271815 | 6271920 | 6271815 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | CDS | 6271332 | 6271583 | 6271332 | ID=Msa0146580-mRNA-1:cds;Parent=Msa0146580-mRNA-1 |
| chr1_4 | three_prime_UTR | 6270977 | 6271331 | 6270977 | ID=Msa0146580-mRNA-1:three_prime_utr;Parent=Msa0146580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
