Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359600 | XP_013459748.1 | 99.672 | 305 | 1 | 0 | 1 | 305 | 245 | 549 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359600 | sp|Q84K11|PPP5_SOLLC | 91.803 | 305 | 25 | 0 | 1 | 305 | 252 | 556 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359600 | A0A072UVB9 | 99.672 | 305 | 1 | 0 | 1 | 305 | 245 | 549 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0359600 | 0.819750 | 9.858008e-53 | -8.615850e-47 |
| Msa0007850 | Msa0359600 | 0.848719 | 5.123232e-60 | -8.615850e-47 |
| Msa0033880 | Msa0359600 | 0.843154 | 1.668727e-58 | -8.615850e-47 |
| Msa0038000 | Msa0359600 | 0.812580 | 3.946668e-51 | -8.615850e-47 |
| Msa0056270 | Msa0359600 | 0.850861 | 1.290896e-60 | -8.615850e-47 |
| Msa0069440 | Msa0359600 | 0.803855 | 2.856706e-49 | -8.615850e-47 |
| Msa0077010 | Msa0359600 | 0.833965 | 3.939245e-56 | -8.615850e-47 |
| Msa0097600 | Msa0359600 | 0.812490 | 4.130999e-51 | -8.615850e-47 |
| Msa0097950 | Msa0359600 | 0.819151 | 1.350228e-52 | -8.615850e-47 |
| Msa0108550 | Msa0359600 | 0.800094 | 1.693338e-48 | -8.615850e-47 |
| Msa0108870 | Msa0359600 | 0.806361 | 8.539073e-50 | -8.615850e-47 |
| Msa0113240 | Msa0359600 | 0.805098 | 1.572895e-49 | -8.615850e-47 |
| Msa0115370 | Msa0359600 | 0.805190 | 1.504725e-49 | -8.615850e-47 |
| Msa0126840 | Msa0359600 | 0.800807 | 1.212039e-48 | -8.615850e-47 |
| Msa0127850 | Msa0359600 | 0.853224 | 2.752056e-61 | -8.615850e-47 |
| Msa0136120 | Msa0359600 | 0.800798 | 1.217072e-48 | -8.615850e-47 |
| Msa0166750 | Msa0359600 | 0.836379 | 9.687248e-57 | -8.615850e-47 |
| Msa0174000 | Msa0359600 | 0.836617 | 8.425586e-57 | -8.615850e-47 |
| Msa0174770 | Msa0359600 | 0.802554 | 5.310396e-49 | -8.615850e-47 |
| Msa0177360 | Msa0359600 | 0.839030 | 2.021331e-57 | -8.615850e-47 |
| Msa0225150 | Msa0359600 | 0.805646 | 1.207303e-49 | -8.615850e-47 |
| Msa0245580 | Msa0359600 | 0.804807 | 1.809351e-49 | -8.615850e-47 |
| Msa0262480 | Msa0359600 | 0.805827 | 1.106101e-49 | -8.615850e-47 |
| Msa0280430 | Msa0359600 | 0.802947 | 4.405685e-49 | -8.615850e-47 |
| Msa0291520 | Msa0359600 | 0.828635 | 8.059346e-55 | -8.615850e-47 |
| Msa0300350 | Msa0359600 | 0.803624 | 3.189433e-49 | -8.615850e-47 |
| Msa0359600 | Msa0384880 | 0.805313 | 1.417779e-49 | -8.615850e-47 |
| Msa0359600 | Msa0474700 | 0.800120 | 1.672499e-48 | -8.615850e-47 |
| Msa0359600 | Msa0478580 | 0.805765 | 1.139827e-49 | -8.615850e-47 |
| Msa0359600 | Msa0534750 | 0.826927 | 2.073879e-54 | -8.615850e-47 |
| Msa0359600 | Msa0547990 | 0.809935 | 1.479306e-50 | -8.615850e-47 |
| Msa0359600 | Msa0550570 | 0.818149 | 2.279417e-52 | -8.615850e-47 |
| Msa0359600 | Msa0556790 | 0.804701 | 1.903772e-49 | -8.615850e-47 |
| Msa0359600 | Msa0581070 | 0.819855 | 9.327310e-53 | -8.615850e-47 |
| Msa0359600 | Msa0593700 | 0.824223 | 9.069658e-54 | -8.615850e-47 |
| Msa0359600 | Msa0604960 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
| Msa0359600 | Msa0618930 | 0.801097 | 1.057504e-48 | -8.615850e-47 |
| Msa0359600 | Msa0633570 | 0.827024 | 1.966052e-54 | -8.615850e-47 |
| Msa0359600 | Msa0654870 | 0.801430 | 9.036935e-49 | -8.615850e-47 |
| Msa0359600 | Msa0659030 | 0.827288 | 1.699340e-54 | -8.615850e-47 |
| Msa0359600 | Msa0659990 | 0.806813 | 6.854588e-50 | -8.615850e-47 |
| Msa0359600 | Msa0666230 | 0.800230 | 1.588832e-48 | -8.615850e-47 |
| Msa0359600 | Msa0683780 | 0.818071 | 2.372774e-52 | -8.615850e-47 |
| Msa0359600 | Msa0705000 | 0.838874 | 2.218878e-57 | -8.615850e-47 |
| Msa0359600 | Msa0705040 | 0.851307 | 9.663233e-61 | -8.615850e-47 |
| Msa0359600 | Msa0744100 | 0.813515 | 2.462055e-51 | -8.615850e-47 |
| Msa0359600 | Msa0766670 | 0.802114 | 6.541758e-49 | -8.615850e-47 |
| Msa0359600 | Msa0769590 | 0.801750 | 7.770083e-49 | -8.615850e-47 |
| Msa0359600 | Msa0785130 | 0.813270 | 2.786056e-51 | -8.615850e-47 |
| Msa0359600 | Msa0788120 | 0.804216 | 2.402688e-49 | -8.615850e-47 |
| Msa0359600 | Msa0819540 | 0.802954 | 4.389871e-49 | -8.615850e-47 |
| Msa0359600 | Msa0822180 | 0.805864 | 1.086724e-49 | -8.615850e-47 |
| Msa0359600 | Msa0825270 | 0.825677 | 4.113737e-54 | -8.615850e-47 |
| Msa0359600 | Msa0858440 | 0.813187 | 2.905616e-51 | -8.615850e-47 |
| Msa0359600 | Msa0864420 | 0.805182 | 1.510216e-49 | -8.615850e-47 |
| Msa0359600 | Msa0943170 | 0.828844 | 7.173596e-55 | -8.615850e-47 |
| Msa0359600 | Msa0963020 | 0.843330 | 1.497250e-58 | -8.615850e-47 |
| Msa0359600 | Msa0968440 | 0.840915 | 6.519350e-58 | -8.615850e-47 |
| Msa0359600 | Msa0980940 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0359600 | Msa0981430 | 0.801003 | 1.105060e-48 | -8.615850e-47 |
| Msa0359600 | Msa0994290 | 0.806956 | 6.394960e-50 | -8.615850e-47 |
| Msa0359600 | Msa1017510 | 0.812922 | 3.321410e-51 | -8.615850e-47 |
| Msa0359600 | Msa1025940 | 0.849883 | 2.428893e-60 | -8.615850e-47 |
| Msa0359600 | Msa1034720 | 0.808400 | 3.155311e-50 | -8.615850e-47 |
| Msa0359600 | Msa1037510 | 0.810478 | 1.129855e-50 | -8.615850e-47 |
| Msa0359600 | Msa1070390 | 0.829788 | 4.230896e-55 | -8.615850e-47 |
| Msa0359600 | Msa1083880 | 0.824758 | 6.787421e-54 | -8.615850e-47 |
| Msa0359600 | Msa1123350 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
| Msa0359600 | Msa1123830 | 0.816777 | 4.643284e-52 | -8.615850e-47 |
| Msa0359600 | Msa1125500 | 0.841202 | 5.483344e-58 | -8.615850e-47 |
| Msa0359600 | Msa1125580 | 0.827354 | 1.639026e-54 | -8.615850e-47 |
| Msa0359600 | Msa1145240 | 0.823555 | 1.300438e-53 | -8.615850e-47 |
| Msa0359600 | Msa1166870 | 0.815138 | 1.077914e-51 | -8.615850e-47 |
| Msa0359600 | Msa1179950 | 0.815177 | 1.056680e-51 | -8.615850e-47 |
| Msa0359600 | Msa1179980 | 0.827357 | 1.635945e-54 | -8.615850e-47 |
| Msa0359600 | Msa1184370 | 0.828628 | 8.086464e-55 | -8.615850e-47 |
| Msa0359600 | Msa1201830 | 0.839151 | 1.880481e-57 | -8.615850e-47 |
| Msa0359600 | Msa1206650 | 0.814149 | 1.784182e-51 | -8.615850e-47 |
| Msa0359600 | Msa1207730 | 0.813612 | 2.343736e-51 | -8.615850e-47 |
| Msa0359600 | Msa1227690 | 0.860855 | 1.543567e-63 | -8.615850e-47 |
| Msa0359600 | Msa1234980 | 0.829759 | 4.300167e-55 | -8.615850e-47 |
| Msa0359600 | Msa1241190 | 0.804850 | 1.772462e-49 | -8.615850e-47 |
| Msa0359600 | Msa1254710 | 0.800766 | 1.235758e-48 | -8.615850e-47 |
| Msa0359600 | Msa1256770 | 0.803260 | 3.795021e-49 | -8.615850e-47 |
| Msa0359600 | Msa1270620 | 0.819386 | 1.193336e-52 | -8.615850e-47 |
| Msa0359600 | Msa1270690 | 0.822662 | 2.100946e-53 | -8.615850e-47 |
| Msa0359600 | Msa1290450 | 0.816304 | 5.923952e-52 | -8.615850e-47 |
| Msa0359600 | Msa1294840 | 0.842349 | 2.730187e-58 | -8.615850e-47 |
| Msa0359600 | Msa1306990 | 0.815696 | 8.098711e-52 | -8.615850e-47 |
| Msa0359600 | Msa1310690 | 0.826220 | 3.056980e-54 | -8.615850e-47 |
| Msa0359600 | Msa1344310 | 0.802846 | 4.621992e-49 | -8.615850e-47 |
| Msa0359600 | Msa1344850 | 0.800259 | 1.567584e-48 | -8.615850e-47 |
| Msa0359600 | Msa1349570 | 0.809294 | 2.031375e-50 | -8.615850e-47 |
| Msa0359600 | Msa1363860 | 0.809376 | 1.950880e-50 | -8.615850e-47 |
| Msa0359600 | Msa1369190 | 0.819258 | 1.276536e-52 | -8.615850e-47 |
| Msa0359600 | Msa1372310 | 0.802891 | 4.523385e-49 | -8.615850e-47 |
| Msa0359600 | Msa1385810 | 0.810783 | 9.708309e-51 | -8.615850e-47 |
| Msa0359600 | Msa1409260 | 0.821611 | 3.683558e-53 | -8.615850e-47 |
| Msa0359600 | Msa1411950 | 0.807359 | 5.254668e-50 | -8.615850e-47 |
| Msa0359600 | Msa1432480 | 0.805059 | 1.602758e-49 | -8.615850e-47 |
| Msa0359600 | Msa1435440 | 0.824075 | 9.821903e-54 | -8.615850e-47 |
| Msa0359600 | Msa1435770 | 0.823830 | 1.121498e-53 | -8.615850e-47 |
| Msa0359600 | Msa1442850 | 0.809550 | 1.790060e-50 | -8.615850e-47 |
| Msa0359600 | Msa1462860 | 0.829010 | 6.538547e-55 | -8.615850e-47 |
| Msa0359600 | Msa1465080 | 0.815676 | 8.182876e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359600 | MtrunA17_Chr3g0097231 | 99.672 | 305 | 1 | 0 | 1 | 305 | 178 | 482 | 0.0 | 637 |
| Msa0359600 | MtrunA17_Chr2g0330311 | 83.660 | 306 | 48 | 2 | 1 | 305 | 205 | 509 | 0.0 | 534 |
| Msa0359600 | MtrunA17_Chr2g0330331 | 86.411 | 287 | 38 | 1 | 1 | 286 | 43 | 329 | 0.0 | 509 |
| Msa0359600 | MtrunA17_Chr1g0186811 | 43.939 | 264 | 141 | 4 | 7 | 269 | 22 | 279 | 5.04e-73 | 228 |
| Msa0359600 | MtrunA17_Chr7g0272371 | 43.182 | 264 | 143 | 4 | 7 | 269 | 24 | 281 | 5.06e-72 | 224 |
| Msa0359600 | MtrunA17_Chr1g0190121 | 42.803 | 264 | 144 | 4 | 7 | 269 | 22 | 279 | 1.71e-71 | 224 |
| Msa0359600 | MtrunA17_Chr7g0274931 | 43.561 | 264 | 142 | 4 | 7 | 269 | 22 | 279 | 1.83e-71 | 224 |
| Msa0359600 | MtrunA17_Chr5g0436061 | 43.182 | 264 | 143 | 4 | 7 | 269 | 39 | 296 | 1.50e-70 | 221 |
| Msa0359600 | MtrunA17_Chr8g0334361 | 42.857 | 252 | 137 | 4 | 19 | 269 | 32 | 277 | 1.70e-70 | 220 |
| Msa0359600 | MtrunA17_Chr8g0387541 | 43.750 | 256 | 137 | 4 | 18 | 272 | 34 | 283 | 6.93e-70 | 219 |
| Msa0359600 | MtrunA17_Chr1g0167751 | 41.897 | 253 | 140 | 4 | 18 | 269 | 33 | 279 | 3.10e-68 | 215 |
| Msa0359600 | MtrunA17_Chr8g0364041 | 42.857 | 245 | 134 | 5 | 45 | 287 | 50 | 290 | 3.64e-61 | 196 |
| Msa0359600 | MtrunA17_Chr5g0445011 | 38.754 | 289 | 168 | 6 | 2 | 288 | 8 | 289 | 3.69e-61 | 196 |
| Msa0359600 | MtrunA17_Chr5g0415261 | 42.276 | 246 | 136 | 5 | 45 | 288 | 50 | 291 | 6.94e-61 | 196 |
| Msa0359600 | MtrunA17_Chr7g0268381 | 38.113 | 265 | 157 | 4 | 9 | 272 | 25 | 283 | 3.29e-60 | 194 |
| Msa0359600 | MtrunA17_Chr8g0378521 | 39.683 | 252 | 145 | 4 | 22 | 272 | 33 | 278 | 3.90e-60 | 194 |
| Msa0359600 | MtrunA17_Chr1g0165341 | 45.106 | 235 | 125 | 4 | 39 | 271 | 40 | 272 | 3.94e-59 | 191 |
| Msa0359600 | MtrunA17_Chr8g0369981 | 36.982 | 338 | 151 | 11 | 18 | 293 | 100 | 437 | 7.11e-55 | 184 |
| Msa0359600 | MtrunA17_Chr2g0322121 | 37.121 | 264 | 139 | 9 | 24 | 269 | 677 | 931 | 3.61e-44 | 160 |
| Msa0359600 | MtrunA17_Chr4g0025471 | 36.742 | 264 | 140 | 9 | 24 | 269 | 682 | 936 | 1.24e-42 | 156 |
| Msa0359600 | MtrunA17_Chr1g0196211 | 35.556 | 180 | 100 | 5 | 101 | 268 | 5 | 180 | 6.46e-27 | 105 |
| Msa0359600 | MtrunA17_Chr2g0330011 | 46.429 | 84 | 43 | 1 | 48 | 129 | 265 | 348 | 1.01e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359600 | AT2G42810.2 | 90.492 | 305 | 29 | 0 | 1 | 305 | 234 | 538 | 0.0 | 592 |
| Msa0359600 | AT2G42810.3 | 90.492 | 305 | 29 | 0 | 1 | 305 | 233 | 537 | 0.0 | 592 |
| Msa0359600 | AT2G42810.1 | 90.492 | 305 | 29 | 0 | 1 | 305 | 180 | 484 | 0.0 | 592 |
| Msa0359600 | AT2G42810.5 | 90.492 | 305 | 29 | 0 | 1 | 305 | 180 | 484 | 0.0 | 592 |
| Msa0359600 | AT2G42810.4 | 90.492 | 305 | 29 | 0 | 1 | 305 | 180 | 484 | 0.0 | 592 |
| Msa0359600 | AT2G29400.1 | 43.233 | 266 | 145 | 3 | 7 | 272 | 39 | 298 | 1.18e-72 | 227 |
| Msa0359600 | AT5G27840.1 | 43.939 | 264 | 141 | 4 | 7 | 269 | 28 | 285 | 1.36e-72 | 226 |
| Msa0359600 | AT5G27840.2 | 43.939 | 264 | 141 | 4 | 7 | 269 | 28 | 285 | 1.61e-72 | 226 |
| Msa0359600 | AT5G27840.3 | 43.939 | 264 | 141 | 4 | 7 | 269 | 28 | 285 | 1.61e-72 | 226 |
| Msa0359600 | AT5G27840.4 | 43.939 | 264 | 141 | 4 | 7 | 269 | 28 | 285 | 1.82e-72 | 226 |
| Msa0359600 | AT5G59160.3 | 40.625 | 288 | 160 | 5 | 7 | 293 | 32 | 309 | 2.45e-72 | 226 |
| Msa0359600 | AT5G59160.2 | 40.625 | 288 | 160 | 5 | 7 | 293 | 32 | 309 | 2.45e-72 | 226 |
| Msa0359600 | AT5G59160.1 | 40.625 | 288 | 160 | 5 | 7 | 293 | 32 | 309 | 2.45e-72 | 226 |
| Msa0359600 | AT3G46820.1 | 42.803 | 264 | 144 | 4 | 7 | 269 | 32 | 289 | 5.34e-72 | 225 |
| Msa0359600 | AT2G39840.1 | 43.446 | 267 | 144 | 4 | 7 | 272 | 36 | 296 | 2.70e-70 | 221 |
| Msa0359600 | AT5G43380.3 | 43.083 | 253 | 137 | 4 | 18 | 269 | 33 | 279 | 2.89e-70 | 221 |
| Msa0359600 | AT5G43380.1 | 43.083 | 253 | 137 | 4 | 18 | 269 | 33 | 279 | 3.54e-70 | 221 |
| Msa0359600 | AT5G43380.2 | 43.083 | 253 | 137 | 4 | 18 | 269 | 33 | 279 | 3.83e-70 | 221 |
| Msa0359600 | AT3G05580.1 | 43.182 | 264 | 143 | 4 | 7 | 269 | 28 | 285 | 3.93e-70 | 220 |
| Msa0359600 | AT4G11240.1 | 42.424 | 264 | 145 | 4 | 7 | 269 | 23 | 280 | 1.17e-69 | 219 |
| Msa0359600 | AT1G64040.1 | 42.629 | 251 | 137 | 4 | 23 | 272 | 39 | 283 | 7.63e-67 | 212 |
| Msa0359600 | AT5G55260.1 | 37.838 | 296 | 175 | 6 | 2 | 295 | 8 | 296 | 2.39e-62 | 200 |
| Msa0359600 | AT2G42500.1 | 38.868 | 265 | 155 | 4 | 9 | 272 | 25 | 283 | 3.31e-62 | 200 |
| Msa0359600 | AT4G26720.1 | 39.427 | 279 | 160 | 6 | 19 | 295 | 25 | 296 | 4.23e-62 | 199 |
| Msa0359600 | AT1G10430.2 | 42.683 | 246 | 135 | 5 | 45 | 288 | 50 | 291 | 2.44e-61 | 197 |
| Msa0359600 | AT1G10430.1 | 42.683 | 246 | 135 | 5 | 45 | 288 | 50 | 291 | 2.44e-61 | 197 |
| Msa0359600 | AT1G59830.1 | 42.683 | 246 | 135 | 5 | 45 | 288 | 50 | 291 | 5.19e-61 | 196 |
| Msa0359600 | AT3G58500.1 | 38.113 | 265 | 157 | 4 | 9 | 272 | 25 | 283 | 2.00e-60 | 195 |
| Msa0359600 | AT1G69960.1 | 42.449 | 245 | 135 | 5 | 45 | 287 | 51 | 291 | 5.76e-60 | 194 |
| Msa0359600 | AT3G05580.2 | 43.290 | 231 | 124 | 4 | 7 | 236 | 28 | 252 | 6.09e-60 | 192 |
| Msa0359600 | AT1G50370.1 | 45.852 | 229 | 120 | 4 | 45 | 271 | 46 | 272 | 5.44e-59 | 191 |
| Msa0359600 | AT3G19980.1 | 44.255 | 235 | 127 | 4 | 39 | 271 | 40 | 272 | 1.68e-57 | 187 |
| Msa0359600 | AT5G63870.1 | 38.361 | 305 | 131 | 11 | 46 | 293 | 81 | 385 | 6.65e-56 | 186 |
| Msa0359600 | AT5G63870.2 | 38.361 | 305 | 131 | 11 | 46 | 293 | 81 | 385 | 6.65e-56 | 186 |
| Msa0359600 | AT5G55260.2 | 33.531 | 337 | 174 | 8 | 2 | 295 | 8 | 337 | 2.90e-55 | 183 |
| Msa0359600 | AT2G42500.2 | 39.111 | 225 | 135 | 2 | 49 | 272 | 13 | 236 | 1.61e-52 | 173 |
| Msa0359600 | AT1G59830.2 | 45.226 | 199 | 104 | 4 | 45 | 241 | 50 | 245 | 1.61e-51 | 171 |
| Msa0359600 | AT1G03445.2 | 39.785 | 279 | 143 | 9 | 31 | 295 | 496 | 763 | 1.06e-49 | 176 |
| Msa0359600 | AT1G03445.1 | 42.688 | 253 | 125 | 8 | 31 | 269 | 496 | 742 | 1.28e-49 | 176 |
| Msa0359600 | AT4G03080.1 | 39.004 | 241 | 126 | 6 | 46 | 269 | 581 | 817 | 8.65e-43 | 157 |
| Msa0359600 | AT2G27210.2 | 35.741 | 263 | 144 | 8 | 24 | 269 | 683 | 937 | 4.41e-41 | 152 |
| Msa0359600 | AT2G27210.1 | 35.741 | 263 | 144 | 8 | 24 | 269 | 688 | 942 | 4.42e-41 | 152 |
| Msa0359600 | AT1G08420.2 | 36.719 | 256 | 137 | 8 | 31 | 269 | 701 | 948 | 1.69e-40 | 150 |
| Msa0359600 | AT1G08420.1 | 36.719 | 256 | 137 | 8 | 31 | 269 | 706 | 953 | 1.69e-40 | 150 |
| Msa0359600 | AT1G48120.1 | 33.022 | 321 | 150 | 8 | 18 | 275 | 630 | 948 | 2.00e-39 | 147 |
| Msa0359600 | AT5G63870.3 | 36.937 | 222 | 106 | 6 | 43 | 230 | 78 | 299 | 5.44e-39 | 139 |
| Msa0359600 | AT5G10900.3 | 34.586 | 266 | 137 | 6 | 46 | 275 | 227 | 491 | 2.48e-36 | 137 |
| Msa0359600 | AT5G10900.2 | 34.586 | 266 | 137 | 6 | 46 | 275 | 227 | 491 | 2.52e-36 | 137 |
| Msa0359600 | AT5G10900.1 | 34.586 | 266 | 137 | 6 | 46 | 275 | 227 | 491 | 2.76e-36 | 137 |
| Msa0359600 | AT2G42500.4 | 40.541 | 111 | 63 | 2 | 45 | 152 | 57 | 167 | 2.04e-21 | 89.7 |
| Msa0359600 | AT2G42500.3 | 40.708 | 113 | 64 | 2 | 39 | 148 | 51 | 163 | 2.43e-21 | 89.4 |
| Msa0359600 | AT2G42500.5 | 42.056 | 107 | 59 | 2 | 45 | 148 | 57 | 163 | 3.72e-21 | 89.0 |
Find 83 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACCTGATCACAGTAATT+TGG | 0.220828 | 3_1:-47584660 | None:intergenic |
| TTTAGGATGCATTTGGAAAT+TGG | 0.227878 | 3_1:+47585747 | Msa0359600:three_prime_UTR |
| AAGCCCTAAGGGCAACATTT+TGG | 0.258401 | 3_1:+47585416 | Msa0359600:three_prime_UTR |
| CGCTTGCTAGGTCCTCTTCC+AGG | 0.271139 | 3_1:-47584420 | None:intergenic |
| TTCTTGAAGGATAATAATTT+AGG | 0.289596 | 3_1:+47584483 | Msa0359600:CDS |
| GAAAATCCATATCTATTTAA+TGG | 0.291516 | 3_1:+47583672 | Msa0359600:CDS |
| GATAGATTTATTTGAAGTTT+AGG | 0.299108 | 3_1:+47585730 | Msa0359600:three_prime_UTR |
| AGAAGGGGATACTATTACTT+TGG | 0.310255 | 3_1:+47582928 | Msa0359600:five_prime_UTR |
| GATGGTGACTAGAGAAGATT+TGG | 0.332455 | 3_1:+47585438 | Msa0359600:three_prime_UTR |
| GATTATGGTTTAGTTTAAAC+TGG | 0.333624 | 3_1:+47585627 | Msa0359600:three_prime_UTR |
| GTAATGTTGGGTTTCAAATC+AGG | 0.336999 | 3_1:-47584860 | None:intergenic |
| TTGTATCTTCATTGGCTTCA+TGG | 0.337816 | 3_1:+47585593 | Msa0359600:three_prime_UTR |
| TTTGAAGTTTAGGATGCATT+TGG | 0.343201 | 3_1:+47585740 | Msa0359600:three_prime_UTR |
| TATTCAGGAGCAAGAATAGA+AGG | 0.343533 | 3_1:+47582911 | Msa0359600:five_prime_UTR |
| GTCAAACAAAGATAAGTAAA+AGG | 0.344869 | 3_1:-47585677 | None:intergenic |
| CAAAAGAAAGTGGCATCATT+TGG | 0.356170 | 3_1:-47585532 | None:intergenic |
| CTGAAATCCGATCAATTAAT+CGG | 0.356487 | 3_1:+47584235 | Msa0359600:CDS |
| AACAGAAGTGCTTGCATAAA+CGG | 0.363037 | 3_1:+47582984 | Msa0359600:CDS |
| GATGTCGAGCCACAGTATTC+AGG | 0.365324 | 3_1:+47582896 | None:intergenic |
| CATCCAAAATGTTGCCCTTA+GGG | 0.366099 | 3_1:-47585419 | None:intergenic |
| AAGGAAACTTGTATCTTCAT+TGG | 0.372881 | 3_1:+47585585 | Msa0359600:three_prime_UTR |
| TAAGCCATTGGCTTGACATC+AGG | 0.385233 | 3_1:-47585293 | None:intergenic |
| TCTATTTAATGGTGACTTTG+TGG | 0.389007 | 3_1:+47583683 | Msa0359600:CDS |
| CCTCTTCCAGGGAGAGGTTG+TGG | 0.389634 | 3_1:-47584408 | None:intergenic |
| AGTATTCTGCTGTTTACCTT+TGG | 0.392555 | 3_1:+47584143 | Msa0359600:CDS |
| CGTGGTGTAGGCCTTTCTTT+CGG | 0.405811 | 3_1:+47584441 | Msa0359600:CDS |
| AACATTTGTTGAACTATTTG+CGG | 0.408597 | 3_1:+47584119 | Msa0359600:CDS |
| AAGTCACCATTAAATAGATA+TGG | 0.408912 | 3_1:-47583678 | None:intergenic |
| CCATCCAAAATGTTGCCCTT+AGG | 0.410743 | 3_1:-47585420 | None:intergenic |
| TGCTCCAAATTACTGTGATC+AGG | 0.411289 | 3_1:+47584656 | Msa0359600:CDS |
| AAGAGCATGAACAAGATATA+TGG | 0.417540 | 3_1:+47584063 | Msa0359600:CDS |
| AATGGTGACTTTGTGGATAG+AGG | 0.418839 | 3_1:+47583690 | Msa0359600:CDS |
| TCGGTGGTGATGTTACAAAA+AGG | 0.423551 | 3_1:+47584460 | Msa0359600:CDS |
| AGGCGCTTCAAATCGAATAA+AGG | 0.429523 | 3_1:-47584840 | None:intergenic |
| TGAGCTCAACGGGCTGCCTT+CGG | 0.437951 | 3_1:+47583647 | Msa0359600:CDS |
| AGTAAAGGACGAGGGTTATG+AGG | 0.450555 | 3_1:+47584599 | Msa0359600:CDS |
| TGTATCTTCATTGGCTTCAT+GGG | 0.464653 | 3_1:+47585594 | Msa0359600:three_prime_UTR |
| CGGTGCATCTATACCTTCCT+CGG | 0.467541 | 3_1:-47584271 | None:intergenic |
| GGTTGATGTGTGAGTTGCTA+TGG | 0.470365 | 3_1:+47584379 | Msa0359600:CDS |
| CACAAAACCGATTAATTGAT+CGG | 0.472508 | 3_1:-47584242 | None:intergenic |
| GGATTTCGTAAAGAAAATGA+TGG | 0.477932 | 3_1:+47582949 | Msa0359600:exon |
| CATTACTACATTTGCAGCAG+TGG | 0.484793 | 3_1:+47584877 | Msa0359600:CDS |
| CTAGGTCCTCTTCCAGGGAG+AGG | 0.499390 | 3_1:-47584414 | None:intergenic |
| AGGCCTACACCACGCTTGCT+AGG | 0.500648 | 3_1:-47584432 | None:intergenic |
| TAACATCACCACCGAAAGAA+AGG | 0.508338 | 3_1:-47584452 | None:intergenic |
| TGCTGCAAATGTAGTAATGT+TGG | 0.520819 | 3_1:-47584873 | None:intergenic |
| GAAATCAAATCAACAATACT+AGG | 0.521136 | 3_1:-47585699 | None:intergenic |
| TTTAAGTGCATGTCTCCATC+AGG | 0.524892 | 3_1:+47583750 | Msa0359600:CDS |
| CCACAACCTCTCCCTGGAAG+AGG | 0.528098 | 3_1:+47584408 | Msa0359600:CDS |
| AGTGATCCACAACCTCTCCC+TGG | 0.533336 | 3_1:+47584402 | Msa0359600:CDS |
| TTCAAAGCAGCACCAACCAT+TGG | 0.535762 | 3_1:-47585380 | None:intergenic |
| GGACCTAGCAAGCGTGGTGT+AGG | 0.541640 | 3_1:+47584429 | Msa0359600:CDS |
| AAGTTGTTTGCATAAGCCAT+TGG | 0.542638 | 3_1:-47585305 | None:intergenic |
| GGTGCATCTATACCTTCCTC+GGG | 0.543952 | 3_1:-47584270 | None:intergenic |
| AAGCCATTGGCTTGACATCA+GGG | 0.553710 | 3_1:-47585292 | None:intergenic |
| TTGTGGCGATGTGCATGGTC+AGG | 0.553831 | 3_1:+47583195 | Msa0359600:CDS |
| GCTGCAAATGTAGTAATGTT+GGG | 0.558396 | 3_1:-47584872 | None:intergenic |
| AATCTAGAACTGCCAATGGT+TGG | 0.561144 | 3_1:+47585368 | Msa0359600:three_prime_UTR |
| GGTGTAGGCCTTTCTTTCGG+TGG | 0.561941 | 3_1:+47584444 | Msa0359600:CDS |
| ATTCAGGAGCAAGAATAGAA+GGG | 0.564418 | 3_1:+47582912 | Msa0359600:five_prime_UTR |
| ACAGTTATGTCGACAAGAGA+AGG | 0.566155 | 3_1:-47583148 | None:intergenic |
| GCTTGCTAGGTCCTCTTCCA+GGG | 0.567459 | 3_1:-47584419 | None:intergenic |
| TGTGCGATCTCATGAAGTAA+AGG | 0.569085 | 3_1:+47584584 | Msa0359600:CDS |
| ATCTCATGAAGTAAAGGACG+AGG | 0.570634 | 3_1:+47584590 | Msa0359600:CDS |
| TCGTTTATCACATGAGCCAA+AGG | 0.573998 | 3_1:-47584159 | None:intergenic |
| ACTGGTTACATGAATAGCAT+AGG | 0.576466 | 3_1:+47585645 | Msa0359600:three_prime_UTR |
| ACTGTTTGTGGCGATGTGCA+TGG | 0.587689 | 3_1:+47583190 | Msa0359600:CDS |
| GTCGACATAACTGTTCCTCA+TGG | 0.591645 | 3_1:+47583157 | Msa0359600:CDS |
| ATTGGCTTGACATCAGGGTG+TGG | 0.600031 | 3_1:-47585287 | None:intergenic |
| TTCAGGAGCAAGAATAGAAG+GGG | 0.604663 | 3_1:+47582913 | Msa0359600:five_prime_UTR |
| ATTCTTGCTCCTGAATACTG+TGG | 0.606734 | 3_1:-47582905 | None:intergenic |
| TCAGCTATATATCTAGCTAG+AGG | 0.610124 | 3_1:+47584027 | Msa0359600:intron |
| ACACCCTGATGTCAAGCCAA+TGG | 0.616964 | 3_1:+47585289 | Msa0359600:CDS |
| GGAAGAGGACCTAGCAAGCG+TGG | 0.624373 | 3_1:+47584423 | Msa0359600:CDS |
| ACTTAAATGCAAACAAAGTG+AGG | 0.624984 | 3_1:-47583734 | None:intergenic |
| TTGATTATGAGAACATTCTG+AGG | 0.627087 | 3_1:-47585328 | None:intergenic |
| GAAAGTGGCATCATTTGGAG+AGG | 0.631480 | 3_1:-47585527 | None:intergenic |
| GCATCTATACCTTCCTCGGG+AGG | 0.634980 | 3_1:-47584267 | None:intergenic |
| AAAGTGGCATCATTTGGAGA+GGG | 0.638466 | 3_1:-47585526 | None:intergenic |
| TTTCTGTAGATGGGTAACAA+AGG | 0.644956 | 3_1:+47584815 | Msa0359600:intron |
| TAGCAATCTAGAACTGCCAA+TGG | 0.647447 | 3_1:+47585364 | Msa0359600:three_prime_UTR |
| GGTTATGAGGTTGATCATGA+CGG | 0.656315 | 3_1:+47584612 | Msa0359600:CDS |
| TCTCATGAAGTAAAGGACGA+GGG | 0.727443 | 3_1:+47584591 | Msa0359600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAAAAAA+TGG | - | chr3_1:47583483-47583502 | None:intergenic | 0.0% |
| !!! | GTTTTAATAAAAAATGAAAA+GGG | + | chr3_1:47584949-47584968 | Msa0359600:intron | 10.0% |
| !!! | TTTTGTTTTGTATAATATTT+TGG | + | chr3_1:47585475-47585494 | Msa0359600:three_prime_UTR | 10.0% |
| !! | CATGAAAAATAAAATTGAAA+GGG | - | chr3_1:47583594-47583613 | None:intergenic | 15.0% |
| !! | TCATGAAAAATAAAATTGAA+AGG | - | chr3_1:47583595-47583614 | None:intergenic | 15.0% |
| !! | ATATATAGCTGAAAATAATA+TGG | - | chr3_1:47584019-47584038 | None:intergenic | 15.0% |
| !! | TTTGTTAATGTATATATGTT+CGG | + | chr3_1:47584347-47584366 | Msa0359600:intron | 15.0% |
| !! | ATAAAATTATTCAAGAAAGA+AGG | - | chr3_1:47584705-47584724 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTGAATAATTTTA+TGG | + | chr3_1:47584704-47584723 | Msa0359600:intron | 15.0% |
| !!! | CGTTTTAATAAAAAATGAAA+AGG | + | chr3_1:47584948-47584967 | Msa0359600:intron | 15.0% |
| !! | AATTGTTGCTAATATCTTAA+AGG | + | chr3_1:47583244-47583263 | Msa0359600:intron | 20.0% |
| !! | TAAATTCACTTTATGAAGAA+TGG | - | chr3_1:47583335-47583354 | None:intergenic | 20.0% |
| !! | GAAAATCCATATCTATTTAA+TGG | + | chr3_1:47583672-47583691 | Msa0359600:CDS | 20.0% |
| !!! | ATACTATTTTTGATACATCA+TGG | + | chr3_1:47583814-47583833 | Msa0359600:intron | 20.0% |
| !! | AATCACACAATAAACATTAT+TGG | - | chr3_1:47583922-47583941 | None:intergenic | 20.0% |
| !! | AGATCAATTGAAGAAAAAAA+CGG | - | chr3_1:47584294-47584313 | None:intergenic | 20.0% |
| !! | TTCTTGAAGGATAATAATTT+AGG | + | chr3_1:47584483-47584502 | Msa0359600:CDS | 20.0% |
| !!! | TAGCTTAAAATGTTGAATTT+TGG | + | chr3_1:47585092-47585111 | Msa0359600:intron | 20.0% |
| !!! | AGCTTAAAATGTTGAATTTT+GGG | + | chr3_1:47585093-47585112 | Msa0359600:intron | 20.0% |
| !!! | TTTGTACTTTTTGTTTCTTT+TGG | + | chr3_1:47585551-47585570 | Msa0359600:three_prime_UTR | 20.0% |
| !!! | GTTGATTTGATTTCATTTTT+TGG | + | chr3_1:47585708-47585727 | Msa0359600:three_prime_UTR | 20.0% |
| !!! | GATAGATTTATTTGAAGTTT+AGG | + | chr3_1:47585730-47585749 | Msa0359600:three_prime_UTR | 20.0% |
| !! | CAGGTAATTGGTTTATTATA+TGG | + | chr3_1:47583214-47583233 | Msa0359600:intron | 25.0% |
| ! | GAATTTATTTGACCATTATG+TGG | + | chr3_1:47583348-47583367 | Msa0359600:intron | 25.0% |
| ! | AAGTCACCATTAAATAGATA+TGG | - | chr3_1:47583681-47583700 | None:intergenic | 25.0% |
| !!! | TCTTTCTTTATTAGCTTGTT+AGG | + | chr3_1:47583784-47583803 | Msa0359600:intron | 25.0% |
| ! | AATACATTAAGCATCTAATC+AGG | - | chr3_1:47583868-47583887 | None:intergenic | 25.0% |
| !!! | AACAAGATATATGGTTTTGA+GGG | + | chr3_1:47584072-47584091 | Msa0359600:CDS | 25.0% |
| !! | AACATTTGTTGAACTATTTG+CGG | + | chr3_1:47584119-47584138 | Msa0359600:CDS | 25.0% |
| ! | TTAACAAAACTACGATGAAA+TGG | - | chr3_1:47584335-47584354 | None:intergenic | 25.0% |
| !! | ACATTAATATAAGAAGTGTG+TGG | - | chr3_1:47584739-47584758 | None:intergenic | 25.0% |
| !! | TTTTCATTGTTTTCTGTAGA+TGG | + | chr3_1:47584805-47584824 | Msa0359600:intron | 25.0% |
| !! | TTTCATTGTTTTCTGTAGAT+GGG | + | chr3_1:47584806-47584825 | Msa0359600:intron | 25.0% |
| ! | AGAATCATGTTGTCAAATAT+CGG | + | chr3_1:47584975-47584994 | Msa0359600:intron | 25.0% |
| ! | ATATCTTCATTCAATTTGTG+AGG | + | chr3_1:47585208-47585227 | Msa0359600:intron | 25.0% |
| !! | GACATACTTTCTTATTGATT+TGG | + | chr3_1:47585243-47585262 | Msa0359600:intron | 25.0% |
| !! | ACAAAAAGTACAAAAGAAAG+TGG | - | chr3_1:47585545-47585564 | None:intergenic | 25.0% |
| !! | GATTATGGTTTAGTTTAAAC+TGG | + | chr3_1:47585627-47585646 | Msa0359600:three_prime_UTR | 25.0% |
| ! | GTCAAACAAAGATAAGTAAA+AGG | - | chr3_1:47585680-47585699 | None:intergenic | 25.0% |
| ! | GAAATCAAATCAACAATACT+AGG | - | chr3_1:47585702-47585721 | None:intergenic | 25.0% |
| GGATTTCGTAAAGAAAATGA+TGG | + | chr3_1:47582949-47582968 | Msa0359600:exon | 30.0% | |
| ! | ACAGTAAAATGTTTTCCATG+AGG | - | chr3_1:47583175-47583194 | None:intergenic | 30.0% |
| ! | GGAAAACATTTTACTGTTTG+TGG | + | chr3_1:47583178-47583197 | Msa0359600:CDS | 30.0% |
| TGTTGCTAATATCTTAAAGG+TGG | + | chr3_1:47583247-47583266 | Msa0359600:intron | 30.0% | |
| TTTATTTGACCATTATGTGG+CGG | + | chr3_1:47583351-47583370 | Msa0359600:intron | 30.0% | |
| TTAAATCCTTCGTACAAATG+AGG | - | chr3_1:47583433-47583452 | None:intergenic | 30.0% | |
| !! | CTGAATATTTTTGAGCTCAA+CGG | + | chr3_1:47583636-47583655 | Msa0359600:CDS | 30.0% |
| !! | TGAATATTTTTGAGCTCAAC+GGG | + | chr3_1:47583637-47583656 | Msa0359600:CDS | 30.0% |
| TCTATTTAATGGTGACTTTG+TGG | + | chr3_1:47583683-47583702 | Msa0359600:CDS | 30.0% | |
| ACTTAAATGCAAACAAAGTG+AGG | - | chr3_1:47583737-47583756 | None:intergenic | 30.0% | |
| AGCTAATAAAGAAAGAGCTA+GGG | - | chr3_1:47583780-47583799 | None:intergenic | 30.0% | |
| AAGCTAATAAAGAAAGAGCT+AGG | - | chr3_1:47583781-47583800 | None:intergenic | 30.0% | |
| ! | AAGAGCATGAACAAGATATA+TGG | + | chr3_1:47584063-47584082 | Msa0359600:CDS | 30.0% |
| !! | GAACAAGATATATGGTTTTG+AGG | + | chr3_1:47584071-47584090 | Msa0359600:CDS | 30.0% |
| ! | ATAAAGTTTTCGTAGTCCAT+GGG | + | chr3_1:47584181-47584200 | Msa0359600:CDS | 30.0% |
| CTGAAATCCGATCAATTAAT+CGG | + | chr3_1:47584235-47584254 | Msa0359600:CDS | 30.0% | |
| CACAAAACCGATTAATTGAT+CGG | - | chr3_1:47584245-47584264 | None:intergenic | 30.0% | |
| TGTTACAAAAAGGTTCTTGA+AGG | + | chr3_1:47584470-47584489 | Msa0359600:CDS | 30.0% | |
| ! | AATTTAGGTATGTTTTCCAC+TGG | + | chr3_1:47584498-47584517 | Msa0359600:intron | 30.0% |
| GAAATTAAATATCAGACCAG+TGG | - | chr3_1:47584517-47584536 | None:intergenic | 30.0% | |
| GAAAGAAGGTTGTAACAAAA+GGG | - | chr3_1:47584691-47584710 | None:intergenic | 30.0% | |
| AGAAAGAAGGTTGTAACAAA+AGG | - | chr3_1:47584692-47584711 | None:intergenic | 30.0% | |
| CATATAGATACATTCATAGG+AGG | - | chr3_1:47584780-47584799 | None:intergenic | 30.0% | |
| CAGCATATAGATACATTCAT+AGG | - | chr3_1:47584783-47584802 | None:intergenic | 30.0% | |
| TTATGCAACGATCAATTTGT+TGG | + | chr3_1:47585167-47585186 | Msa0359600:intron | 30.0% | |
| ATTCAATTTGTGAGGTTATG+TGG | + | chr3_1:47585216-47585235 | Msa0359600:intron | 30.0% | |
| TTGATTATGAGAACATTCTG+AGG | - | chr3_1:47585331-47585350 | None:intergenic | 30.0% | |
| ! | TCTTTTGGTAAACAAGTGTA+AGG | + | chr3_1:47585566-47585585 | Msa0359600:three_prime_UTR | 30.0% |
| AAGGAAACTTGTATCTTCAT+TGG | + | chr3_1:47585585-47585604 | Msa0359600:three_prime_UTR | 30.0% | |
| ATGGGACAAAAAAGTGATTA+TGG | + | chr3_1:47585612-47585631 | Msa0359600:three_prime_UTR | 30.0% | |
| ! | TTTGAAGTTTAGGATGCATT+TGG | + | chr3_1:47585740-47585759 | Msa0359600:three_prime_UTR | 30.0% |
| TATTCAGGAGCAAGAATAGA+AGG | + | chr3_1:47582911-47582930 | Msa0359600:five_prime_UTR | 35.0% | |
| ATTCAGGAGCAAGAATAGAA+GGG | + | chr3_1:47582912-47582931 | Msa0359600:five_prime_UTR | 35.0% | |
| AGAAGGGGATACTATTACTT+TGG | + | chr3_1:47582928-47582947 | Msa0359600:five_prime_UTR | 35.0% | |
| !! | AACAGAAGTGCTTGCATAAA+CGG | + | chr3_1:47582984-47583003 | Msa0359600:CDS | 35.0% |
| AAGTGTATTTGCATTTGTCC+TGG | + | chr3_1:47583063-47583082 | Msa0359600:intron | 35.0% | |
| ! | TTGTCCTGGTTCATTGTTTT+AGG | + | chr3_1:47583077-47583096 | Msa0359600:intron | 35.0% |
| CATACCTAAAACAATGAACC+AGG | - | chr3_1:47583084-47583103 | None:intergenic | 35.0% | |
| !! | CTTTTGTTTGCAACACAATC+TGG | - | chr3_1:47583111-47583130 | None:intergenic | 35.0% |
| TTATTTGACCATTATGTGGC+GGG | + | chr3_1:47583352-47583371 | Msa0359600:intron | 35.0% | |
| ! | AGATATGGATTTTCTTCCGA+AGG | - | chr3_1:47583666-47583685 | None:intergenic | 35.0% |
| TTTCAATTCACTCAGTTAGC+TGG | + | chr3_1:47583971-47583990 | Msa0359600:intron | 35.0% | |
| TTCAATTCACTCAGTTAGCT+GGG | + | chr3_1:47583972-47583991 | Msa0359600:intron | 35.0% | |
| TCAGCTATATATCTAGCTAG+AGG | + | chr3_1:47584027-47584046 | Msa0359600:intron | 35.0% | |
| ! | AGTATTCTGCTGTTTACCTT+TGG | + | chr3_1:47584143-47584162 | Msa0359600:CDS | 35.0% |
| ! | GATAAAGTTTTCGTAGTCCA+TGG | + | chr3_1:47584180-47584199 | Msa0359600:CDS | 35.0% |
| ! | TAAAGTTTTCGTAGTCCATG+GGG | + | chr3_1:47584182-47584201 | Msa0359600:CDS | 35.0% |
| TATATATGTTCGGTATGCGT+AGG | + | chr3_1:47584357-47584376 | Msa0359600:intron | 35.0% | |
| ATATATGTTCGGTATGCGTA+GGG | + | chr3_1:47584358-47584377 | Msa0359600:intron | 35.0% | |
| GTTACCTGATCACAGTAATT+TGG | - | chr3_1:47584663-47584682 | None:intergenic | 35.0% | |
| AGGTTGTAACAAAAGGGATA+TGG | - | chr3_1:47584685-47584704 | None:intergenic | 35.0% | |
| ! | AATATAAGAAGTGTGTGGCA+CGG | - | chr3_1:47584734-47584753 | None:intergenic | 35.0% |
| TTTCTGTAGATGGGTAACAA+AGG | + | chr3_1:47584815-47584834 | Msa0359600:intron | 35.0% | |
| GTAATGTTGGGTTTCAAATC+AGG | - | chr3_1:47584863-47584882 | None:intergenic | 35.0% | |
| GCTGCAAATGTAGTAATGTT+GGG | - | chr3_1:47584875-47584894 | None:intergenic | 35.0% | |
| TGCTGCAAATGTAGTAATGT+TGG | - | chr3_1:47584876-47584895 | None:intergenic | 35.0% | |
| GATATTTCACATCTGTCACA+TGG | + | chr3_1:47585030-47585049 | Msa0359600:intron | 35.0% | |
| ! | ACAGTGTTATCGATTACAGA+TGG | - | chr3_1:47585136-47585155 | None:intergenic | 35.0% |
| TCTGTAATCGATAACACTGT+AGG | + | chr3_1:47585136-47585155 | Msa0359600:intron | 35.0% | |
| AAGTTGTTTGCATAAGCCAT+TGG | - | chr3_1:47585308-47585327 | None:intergenic | 35.0% | |
| !!! | TGTCTAAGTTTTAAGCCCTA+AGG | + | chr3_1:47585404-47585423 | Msa0359600:three_prime_UTR | 35.0% |
| !!! | GTCTAAGTTTTAAGCCCTAA+GGG | + | chr3_1:47585405-47585424 | Msa0359600:three_prime_UTR | 35.0% |
| CAAAAGAAAGTGGCATCATT+TGG | - | chr3_1:47585535-47585554 | None:intergenic | 35.0% | |
| !! | TTGTATCTTCATTGGCTTCA+TGG | + | chr3_1:47585593-47585612 | Msa0359600:three_prime_UTR | 35.0% |
| !! | TGTATCTTCATTGGCTTCAT+GGG | + | chr3_1:47585594-47585613 | Msa0359600:three_prime_UTR | 35.0% |
| ACTGGTTACATGAATAGCAT+AGG | + | chr3_1:47585645-47585664 | Msa0359600:three_prime_UTR | 35.0% | |
| ATTCTTGCTCCTGAATACTG+TGG | - | chr3_1:47582908-47582927 | None:intergenic | 40.0% | |
| TTCAGGAGCAAGAATAGAAG+GGG | + | chr3_1:47582913-47582932 | Msa0359600:five_prime_UTR | 40.0% | |
| ACAGTTATGTCGACAAGAGA+AGG | - | chr3_1:47583151-47583170 | None:intergenic | 40.0% | |
| TATGTGCCTCATTTGTACGA+AGG | + | chr3_1:47583424-47583443 | Msa0359600:intron | 40.0% | |
| TCAGAAGATCATAGAACTGC+AGG | - | chr3_1:47583620-47583639 | None:intergenic | 40.0% | |
| AATGGTGACTTTGTGGATAG+AGG | + | chr3_1:47583690-47583709 | Msa0359600:CDS | 40.0% | |
| ! | GGATAGAGGATCGTTTTCTT+TGG | + | chr3_1:47583704-47583723 | Msa0359600:CDS | 40.0% |
| TTTAAGTGCATGTCTCCATC+AGG | + | chr3_1:47583750-47583769 | Msa0359600:CDS | 40.0% | |
| !!! | GATATATGGTTTTGAGGGTG+AGG | + | chr3_1:47584077-47584096 | Msa0359600:CDS | 40.0% |
| TCGTTTATCACATGAGCCAA+AGG | - | chr3_1:47584162-47584181 | None:intergenic | 40.0% | |
| ! | AAAGTTTTCGTAGTCCATGG+GGG | + | chr3_1:47584183-47584202 | Msa0359600:CDS | 40.0% |
| TAACATCACCACCGAAAGAA+AGG | - | chr3_1:47584455-47584474 | None:intergenic | 40.0% | |
| ! | TCGGTGGTGATGTTACAAAA+AGG | + | chr3_1:47584460-47584479 | Msa0359600:CDS | 40.0% |
| TGTGCGATCTCATGAAGTAA+AGG | + | chr3_1:47584584-47584603 | Msa0359600:CDS | 40.0% | |
| ATCTCATGAAGTAAAGGACG+AGG | + | chr3_1:47584590-47584609 | Msa0359600:CDS | 40.0% | |
| TCTCATGAAGTAAAGGACGA+GGG | + | chr3_1:47584591-47584610 | Msa0359600:CDS | 40.0% | |
| ! | GGTTATGAGGTTGATCATGA+CGG | + | chr3_1:47584612-47584631 | Msa0359600:CDS | 40.0% |
| TGCTCCAAATTACTGTGATC+AGG | + | chr3_1:47584656-47584675 | Msa0359600:CDS | 40.0% | |
| AGGCGCTTCAAATCGAATAA+AGG | - | chr3_1:47584843-47584862 | None:intergenic | 40.0% | |
| CATTACTACATTTGCAGCAG+TGG | + | chr3_1:47584877-47584896 | Msa0359600:CDS | 40.0% | |
| ATGTTGTCAAATATCGGCCA+TGG | + | chr3_1:47584981-47585000 | Msa0359600:intron | 40.0% | |
| AATTAGCCATGGTGTTTCCA+TGG | - | chr3_1:47585001-47585020 | None:intergenic | 40.0% | |
| CATGGCCAATTTGTGAATGA+TGG | + | chr3_1:47585048-47585067 | Msa0359600:intron | 40.0% | |
| TGCCACCATCATTCACAAAT+TGG | - | chr3_1:47585056-47585075 | None:intergenic | 40.0% | |
| TAAGCTACCATAGAACACCA+TGG | - | chr3_1:47585079-47585098 | None:intergenic | 40.0% | |
| TGGCTGCAAATTCAACAAAG+TGG | - | chr3_1:47585270-47585289 | None:intergenic | 40.0% | |
| ! | TAGCAATCTAGAACTGCCAA+TGG | + | chr3_1:47585364-47585383 | Msa0359600:three_prime_UTR | 40.0% |
| ! | AATCTAGAACTGCCAATGGT+TGG | + | chr3_1:47585368-47585387 | Msa0359600:three_prime_UTR | 40.0% |
| CATCCAAAATGTTGCCCTTA+GGG | - | chr3_1:47585422-47585441 | None:intergenic | 40.0% | |
| GATGGTGACTAGAGAAGATT+TGG | + | chr3_1:47585438-47585457 | Msa0359600:three_prime_UTR | 40.0% | |
| AAAGTGGCATCATTTGGAGA+GGG | - | chr3_1:47585529-47585548 | None:intergenic | 40.0% | |
| GTCGACATAACTGTTCCTCA+TGG | + | chr3_1:47583157-47583176 | Msa0359600:CDS | 45.0% | |
| GATGTGCATGGTCAGGTAAT+TGG | + | chr3_1:47583202-47583221 | Msa0359600:intron | 45.0% | |
| AAGAGCTAGGGTTTACCTGA+TGG | - | chr3_1:47583768-47583787 | None:intergenic | 45.0% | |
| !!! | GGGGTCTTTTCAGTGTTGAT+GGG | + | chr3_1:47584202-47584221 | Msa0359600:CDS | 45.0% |
| !!! | GGGTCTTTTCAGTGTTGATG+GGG | + | chr3_1:47584203-47584222 | Msa0359600:CDS | 45.0% |
| ! | GGTTGATGTGTGAGTTGCTA+TGG | + | chr3_1:47584379-47584398 | Msa0359600:CDS | 45.0% |
| AGTAAAGGACGAGGGTTATG+AGG | + | chr3_1:47584599-47584618 | Msa0359600:CDS | 45.0% | |
| AACACCATGGCTAATTGCAG+TGG | + | chr3_1:47585005-47585024 | Msa0359600:intron | 45.0% | |
| GGCCAATTTGTGAATGATGG+TGG | + | chr3_1:47585051-47585070 | Msa0359600:intron | 45.0% | |
| !! | AAGCCATTGGCTTGACATCA+GGG | - | chr3_1:47585295-47585314 | None:intergenic | 45.0% |
| !! | TAAGCCATTGGCTTGACATC+AGG | - | chr3_1:47585296-47585315 | None:intergenic | 45.0% |
| TTCAAAGCAGCACCAACCAT+TGG | - | chr3_1:47585383-47585402 | None:intergenic | 45.0% | |
| ! | AAGCCCTAAGGGCAACATTT+TGG | + | chr3_1:47585416-47585435 | Msa0359600:three_prime_UTR | 45.0% |
| CCATCCAAAATGTTGCCCTT+AGG | - | chr3_1:47585423-47585442 | None:intergenic | 45.0% | |
| ! | CCTAAGGGCAACATTTTGGA+TGG | + | chr3_1:47585420-47585439 | Msa0359600:three_prime_UTR | 45.0% |
| GAAAGTGGCATCATTTGGAG+AGG | - | chr3_1:47585530-47585549 | None:intergenic | 45.0% | |
| ACTGTTTGTGGCGATGTGCA+TGG | + | chr3_1:47583190-47583209 | Msa0359600:CDS | 50.0% | |
| CAACACTGAAAAGACCCCCA+TGG | - | chr3_1:47584200-47584219 | None:intergenic | 50.0% | |
| !! | GGGGGTCTTTTCAGTGTTGA+TGG | + | chr3_1:47584201-47584220 | Msa0359600:CDS | 50.0% |
| GGTGCATCTATACCTTCCTC+GGG | - | chr3_1:47584273-47584292 | None:intergenic | 50.0% | |
| CGGTGCATCTATACCTTCCT+CGG | - | chr3_1:47584274-47584293 | None:intergenic | 50.0% | |
| CGTGGTGTAGGCCTTTCTTT+CGG | + | chr3_1:47584441-47584460 | Msa0359600:CDS | 50.0% | |
| TATCGGCCATGGAAACACCA+TGG | + | chr3_1:47584992-47585011 | Msa0359600:intron | 50.0% | |
| TCTGCCACTGCAATTAGCCA+TGG | - | chr3_1:47585012-47585031 | None:intergenic | 50.0% | |
| !! | TGTGAATGATGGTGGCACCA+TGG | + | chr3_1:47585059-47585078 | Msa0359600:intron | 50.0% |
| CGATTACAGATGGCAGACGA+GGG | - | chr3_1:47585126-47585145 | None:intergenic | 50.0% | |
| TCGATTACAGATGGCAGACG+AGG | - | chr3_1:47585127-47585146 | None:intergenic | 50.0% | |
| !! | ATTGGCTTGACATCAGGGTG+TGG | - | chr3_1:47585290-47585309 | None:intergenic | 50.0% |
| ACACCCTGATGTCAAGCCAA+TGG | + | chr3_1:47585289-47585308 | Msa0359600:CDS | 50.0% | |
| TTGTGGCGATGTGCATGGTC+AGG | + | chr3_1:47583195-47583214 | Msa0359600:CDS | 55.0% | |
| ! | TGACCATTATGTGGCGGGAC+TGG | + | chr3_1:47583357-47583376 | Msa0359600:intron | 55.0% |
| ! | GACCATTATGTGGCGGGACT+GGG | + | chr3_1:47583358-47583377 | Msa0359600:intron | 55.0% |
| ! | ACCATTATGTGGCGGGACTG+GGG | + | chr3_1:47583359-47583378 | Msa0359600:intron | 55.0% |
| ! | TTTTGTGAGCCTCCCGAGGA+AGG | + | chr3_1:47584258-47584277 | Msa0359600:CDS | 55.0% |
| GCATCTATACCTTCCTCGGG+AGG | - | chr3_1:47584270-47584289 | None:intergenic | 55.0% | |
| AGTGATCCACAACCTCTCCC+TGG | + | chr3_1:47584402-47584421 | Msa0359600:CDS | 55.0% | |
| ! | GCTTGCTAGGTCCTCTTCCA+GGG | - | chr3_1:47584422-47584441 | None:intergenic | 55.0% |
| GGTGTAGGCCTTTCTTTCGG+TGG | + | chr3_1:47584444-47584463 | Msa0359600:CDS | 55.0% | |
| GGTGGCACCATGGTGTTCTA+TGG | + | chr3_1:47585069-47585088 | Msa0359600:intron | 55.0% | |
| TCCCCAGTCCCGCCACATAA+TGG | - | chr3_1:47583363-47583382 | None:intergenic | 60.0% | |
| !! | TGAGCTCAACGGGCTGCCTT+CGG | + | chr3_1:47583647-47583666 | Msa0359600:CDS | 60.0% |
| !! | TCGGTTTTGTGAGCCTCCCG+AGG | + | chr3_1:47584254-47584273 | Msa0359600:CDS | 60.0% |
| CCTCTTCCAGGGAGAGGTTG+TGG | - | chr3_1:47584411-47584430 | None:intergenic | 60.0% | |
| CCACAACCTCTCCCTGGAAG+AGG | + | chr3_1:47584408-47584427 | Msa0359600:CDS | 60.0% | |
| CTAGGTCCTCTTCCAGGGAG+AGG | - | chr3_1:47584417-47584436 | None:intergenic | 60.0% | |
| ! | CGCTTGCTAGGTCCTCTTCC+AGG | - | chr3_1:47584423-47584442 | None:intergenic | 60.0% |
| GGAAGAGGACCTAGCAAGCG+TGG | + | chr3_1:47584423-47584442 | Msa0359600:CDS | 60.0% | |
| GGACCTAGCAAGCGTGGTGT+AGG | + | chr3_1:47584429-47584448 | Msa0359600:CDS | 60.0% | |
| AGGCCTACACCACGCTTGCT+AGG | - | chr3_1:47584435-47584454 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 47582898 | 47585769 | 47582898 | ID=Msa0359600;Name=Msa0359600 |
| chr3_1 | mRNA | 47582898 | 47585769 | 47582898 | ID=Msa0359600-mRNA-1;Parent=Msa0359600;Name=Msa0359600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=67|1|1|1|1|1|8|423|305 |
| chr3_1 | exon | 47582898 | 47583005 | 47582898 | ID=Msa0359600-mRNA-1:exon:8323;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47583099 | 47583216 | 47583099 | ID=Msa0359600-mRNA-1:exon:8324;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47583624 | 47583771 | 47583624 | ID=Msa0359600-mRNA-1:exon:8325;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47584031 | 47584279 | 47584031 | ID=Msa0359600-mRNA-1:exon:8326;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47584379 | 47584504 | 47584379 | ID=Msa0359600-mRNA-1:exon:8327;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47584577 | 47584677 | 47584577 | ID=Msa0359600-mRNA-1:exon:8328;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47584824 | 47584898 | 47584824 | ID=Msa0359600-mRNA-1:exon:8329;Parent=Msa0359600-mRNA-1 |
| chr3_1 | exon | 47585287 | 47585769 | 47585287 | ID=Msa0359600-mRNA-1:exon:8330;Parent=Msa0359600-mRNA-1 |
| chr3_1 | five_prime_UTR | 47582898 | 47582964 | 47582898 | ID=Msa0359600-mRNA-1:five_prime_utr;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47582965 | 47583005 | 47582965 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47583099 | 47583216 | 47583099 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47583624 | 47583771 | 47583624 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47584031 | 47584279 | 47584031 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47584379 | 47584504 | 47584379 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47584577 | 47584677 | 47584577 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47584824 | 47584898 | 47584824 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | CDS | 47585287 | 47585346 | 47585287 | ID=Msa0359600-mRNA-1:cds;Parent=Msa0359600-mRNA-1 |
| chr3_1 | three_prime_UTR | 47585347 | 47585769 | 47585347 | ID=Msa0359600-mRNA-1:three_prime_utr;Parent=Msa0359600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
